RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17146
(1011 letters)
>gnl|CDD|143235 cd05758, Ig5_KIRREL3-like, Fifth immunoglobulin (Ig)-like domain of
Kirrel (kin of irregular chiasm-like) 3 (also known as
Neph2) and similar proteins. Ig5_KIRREL3-like: domain
similar to the fifth immunoglobulin (Ig)-like domain of
Kirrel (kin of irregular chiasm-like) 3 (also known as
Neph2). This protein has five Ig-like domains, one
transmembrane domain, and a cytoplasmic tail. Included
in this group is mammalian Kirrel (Neph1), Kirrel2
(Neph3), and Drosophila RST (irregular chiasm
C-roughest) protein. These proteins contain multiple Ig
domains, have properties of cell adhesion molecules, and
are important in organ development.
Length = 98
Score = 127 bits (320), Expect = 1e-34
Identities = 41/98 (41%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Query: 628 GRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKE 687
G P I S TQ+ I GD RVEC FS PPP+++ W+++ E+ GSS Y+V DP
Sbjct: 1 GPPIITSEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPG 60
Query: 688 GIKSTLIIRES-RHDHFGVYNCSVSNPYGSDSVEIMLK 724
G+ STL I + D YNC+ N +GS + I L+
Sbjct: 61 GVLSTLTISNTQESDFQTSYNCTAWNSFGSGTAIISLE 98
Score = 73.2 bits (180), Expect = 1e-15
Identities = 26/57 (45%), Positives = 35/57 (61%)
Query: 474 GRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDV 530
G P I S TQ+ I GD RVEC FS PPP+++ W+++ E+ GSS Y+V D
Sbjct: 1 GPPIITSEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDP 57
>gnl|CDD|219745 pfam08205, C2-set_2, CD80-like C2-set immunoglobulin domain. These
domains belong to the immunoglobulin superfamily.
Length = 89
Score = 77.9 bits (192), Expect = 2e-17
Identities = 31/91 (34%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Query: 135 PRIVQGDTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRRTT 193
P I +L E+ E+ C SA GKP ITW DG ++ + T
Sbjct: 1 PTIEPPVSLLEGENLEVVATCSSAGGKPAPRITWYLDGRELEAITTSSEQDP--ESGLYT 58
Query: 194 VKSTLVLTPKKEHHNTTFTCQAQNTADRTYK 224
V STL L P +E H + TCQ A R K
Sbjct: 59 VTSTLKLVPSREDHGRSLTCQVSYGALRGQK 89
Score = 32.0 bits (73), Expect = 0.29
Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 5/86 (5%)
Query: 630 PTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG- 688
PTI + CS+ P ++TW G E+ ++ S +DP
Sbjct: 1 PTIEPPVSLLEGENLEVVATCSSAGGKPAPRITWYLDGRELEAITT---SSEQDPESGLY 57
Query: 689 -IKSTLIIRESRHDHFGVYNCSVSNP 713
+ STL + SR DH C VS
Sbjct: 58 TVTSTLKLVPSREDHGRSLTCQVSYG 83
>gnl|CDD|143306 cd05898, Ig5_KIRREL3, Fifth immunoglobulin (Ig)-like domain of
Kirrel (kin of irregular chiasm-like) 3 protein (also
known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin
(Ig)-like domain of Kirrel (kin of irregular
chiasm-like) 3 protein (also known as Neph2). This
protein has five Ig-like domains, one transmembrane
domain, and a cytoplasmic tail. Included in this group
is mammalian Kirrel (Neph1). These proteins contain
multiple Ig domains, have properties of cell adhesion
molecules, and are important in organ development. Neph1
and 2 may mediate axonal guidance and synapse formation
in certain areas of the CNS. In the kidney, they
participate in the formation of the slit diaphragm.
Length = 98
Score = 67.3 bits (164), Expect = 1e-13
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 628 GRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKE 687
G P I S + Q+ + G+ +V+C S PPP+++ W+++ + G+S+ Y+V
Sbjct: 1 GPPIISSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGS 60
Query: 688 GIKSTLIIRE-SRHDHFGVYNCSVSNPYGSDSVEIMLK 724
G+ STL I D YNC+ N +GS + I L+
Sbjct: 61 GVLSTLTINNIMEADFQTHYNCTAWNSFGSGTAIIQLE 98
Score = 46.9 bits (111), Expect = 2e-06
Identities = 17/53 (32%), Positives = 33/53 (62%)
Query: 474 GRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSV 526
G P I S + Q+ + G+ +V+C S PPP+++ W+++ + G+S+ Y+V
Sbjct: 1 GPPIISSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTV 53
>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like. IG domains that cannot
be classified into one of IGv1, IGc1, IGc2, IG.
Length = 85
Score = 55.2 bits (133), Expect = 2e-09
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 642 PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHD 701
G++ + C A PPPE VTW Y+ + S +SV STL I +
Sbjct: 8 EGESVTLSCEASGSPPPE-VTW-YKQGGKLLAESGRFSVSRSGST----STLTISNVTPE 61
Query: 702 HFGVYNCSVSNPYGSDSVEIMLK 724
G Y C+ +N GS S L
Sbjct: 62 DSGTYTCAATNSSGSASSGTTLT 84
Score = 49.8 bits (119), Expect = 1e-07
Identities = 24/96 (25%), Positives = 30/96 (31%), Gaps = 12/96 (12%)
Query: 34 PQDQTAVVGSRVTLPCRVI-DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSL 92
P T G VTL C + W K L L+ R+ S +L
Sbjct: 1 PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKL-----LAESGRF--SVSRSGSTSTL 53
Query: 93 EIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
I V +D Y C + S TLTV
Sbjct: 54 TISNVTPEDSGTYTCAATNSS----GSASSGTTLTV 85
Score = 43.6 bits (103), Expect = 2e-05
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 12/72 (16%)
Query: 397 PYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD--------KVVGNSPNLTLLM---TS 445
P SV V G V L C+ G+P PE+TW + V + TL + T
Sbjct: 1 PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60
Query: 446 DDLAGRYYCKAS 457
+D +G Y C A+
Sbjct: 61 ED-SGTYTCAAT 71
Score = 43.6 bits (103), Expect = 2e-05
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 12/72 (16%)
Query: 551 PYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD--------KVVGNSPNLTLLM---TS 599
P SV V G V L C+ G+P PE+TW + V + TL + T
Sbjct: 1 PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60
Query: 600 DDLAGRYYCKAS 611
+D +G Y C A+
Sbjct: 61 ED-SGTYTCAAT 71
Score = 33.2 bits (76), Expect = 0.100
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 142 TLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLT 201
++ E + L C A+G PP E+TW G + + E R+ STL ++
Sbjct: 3 SVTVKEGESVTLSC-EASGSPPPEVTWYKQGGKL-----LAESGRFSVSRSGSTSTLTIS 56
Query: 202 PKKEHHNTTFTCQAQNTADRTYKVARLK 229
+ T+TC A N++ L
Sbjct: 57 NVTPEDSGTYTCAATNSSGSASSGTTLT 84
Score = 31.7 bits (72), Expect = 0.28
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 488 PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKS 533
G++ + C A PPPE VTW Y+ + S +SV S
Sbjct: 8 EGESVTLSCEASGSPPPE-VTW-YKQGGKLLAESGRFSVSRSGSTS 51
Score = 28.2 bits (63), Expect = 5.7
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 11/74 (14%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAA---------ASATELYLTNITRHQHDS 366
EG V L C+A +P WY + A S + L ++N+T +
Sbjct: 7 KEGESVTLSCEASGSPPPE-VTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP-EDSG 64
Query: 367 IVKCEVHNDVGKSE 380
C N G +
Sbjct: 65 TYTCAATNSSGSAS 78
>gnl|CDD|214652 smart00409, IG, Immunoglobulin.
Length = 85
Score = 55.2 bits (133), Expect = 2e-09
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 642 PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHD 701
G++ + C A PPPE VTW Y+ + S +SV STL I +
Sbjct: 8 EGESVTLSCEASGSPPPE-VTW-YKQGGKLLAESGRFSVSRSGST----STLTISNVTPE 61
Query: 702 HFGVYNCSVSNPYGSDSVEIMLK 724
G Y C+ +N GS S L
Sbjct: 62 DSGTYTCAATNSSGSASSGTTLT 84
Score = 49.8 bits (119), Expect = 1e-07
Identities = 24/96 (25%), Positives = 30/96 (31%), Gaps = 12/96 (12%)
Query: 34 PQDQTAVVGSRVTLPCRVI-DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSL 92
P T G VTL C + W K L L+ R+ S +L
Sbjct: 1 PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKL-----LAESGRF--SVSRSGSTSTL 53
Query: 93 EIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
I V +D Y C + S TLTV
Sbjct: 54 TISNVTPEDSGTYTCAATNSS----GSASSGTTLTV 85
Score = 43.6 bits (103), Expect = 2e-05
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 12/72 (16%)
Query: 397 PYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD--------KVVGNSPNLTLLM---TS 445
P SV V G V L C+ G+P PE+TW + V + TL + T
Sbjct: 1 PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60
Query: 446 DDLAGRYYCKAS 457
+D +G Y C A+
Sbjct: 61 ED-SGTYTCAAT 71
Score = 43.6 bits (103), Expect = 2e-05
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 12/72 (16%)
Query: 551 PYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD--------KVVGNSPNLTLLM---TS 599
P SV V G V L C+ G+P PE+TW + V + TL + T
Sbjct: 1 PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60
Query: 600 DDLAGRYYCKAS 611
+D +G Y C A+
Sbjct: 61 ED-SGTYTCAAT 71
Score = 33.2 bits (76), Expect = 0.100
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 142 TLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLT 201
++ E + L C A+G PP E+TW G + + E R+ STL ++
Sbjct: 3 SVTVKEGESVTLSC-EASGSPPPEVTWYKQGGKL-----LAESGRFSVSRSGSTSTLTIS 56
Query: 202 PKKEHHNTTFTCQAQNTADRTYKVARLK 229
+ T+TC A N++ L
Sbjct: 57 NVTPEDSGTYTCAATNSSGSASSGTTLT 84
Score = 31.7 bits (72), Expect = 0.28
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 488 PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKS 533
G++ + C A PPPE VTW Y+ + S +SV S
Sbjct: 8 EGESVTLSCEASGSPPPE-VTW-YKQGGKLLAESGRFSVSRSGSTS 51
Score = 28.2 bits (63), Expect = 5.7
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 11/74 (14%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAA---------ASATELYLTNITRHQHDS 366
EG V L C+A +P WY + A S + L ++N+T +
Sbjct: 7 KEGESVTLSCEASGSPPPE-VTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP-EDSG 64
Query: 367 IVKCEVHNDVGKSE 380
C N G +
Sbjct: 65 TYTCAATNSSGSAS 78
>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain.
Length = 90
Score = 54.2 bits (131), Expect = 4e-09
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
G++AR C+ P P V+W G+ + SSD + V + G TL I + D
Sbjct: 15 GESARFTCTVTGDPDPT-VSWFKDGQPLR--SSDRFKVTYE----GGTYTLTISNVQPDD 67
Query: 703 FGVYNCSVSNPYGSDSVEIMLK 724
G Y C +N G L
Sbjct: 68 EGKYTCVATNSAGEAEASAELT 89
Score = 53.0 bits (128), Expect = 9e-09
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 9/83 (10%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVI-DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEE 87
KF +P+D G C V D + W KD + L DR+ + + E
Sbjct: 2 KFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDG------QPLRSSDRFKV--TYEG 53
Query: 88 GDYSLEIYPVMLDDDARYQCQVS 110
G Y+L I V DD+ +Y C +
Sbjct: 54 GTYTLTISNVQPDDEGKYTCVAT 76
Score = 52.6 bits (127), Expect = 1e-08
Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 16/94 (17%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVVGNSPNLTLLM- 443
P+F +P V+V G C V G+P P ++W + V L
Sbjct: 1 PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTI 60
Query: 444 ---TSDDLAGRYYCKASVMGFPEVG-AEATVYLK 473
DD G+Y C A+ G AEA+ L
Sbjct: 61 SNVQPDD-EGKYTCVATN----SAGEAEASAELT 89
Score = 52.6 bits (127), Expect = 1e-08
Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 16/94 (17%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVVGNSPNLTLLM- 597
P+F +P V+V G C V G+P P ++W + V L
Sbjct: 1 PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTI 60
Query: 598 ---TSDDLAGRYYCKASVMGFPEVG-AEATVYLK 627
DD G+Y C A+ G AEA+ L
Sbjct: 61 SNVQPDD-EGKYTCVATN----SAGEAEASAELT 89
Score = 34.5 bits (80), Expect = 0.036
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 489 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHND 529
G++AR C+ P P V+W G+ + SSD + V +
Sbjct: 15 GESARFTCTVTGDPDPT-VSWFKDGQPL--RSSDRFKVTYE 52
Score = 34.2 bits (79), Expect = 0.045
Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 12/80 (15%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAA--------ASATELYLTNITRHQHDS-I 367
EG R C +P W+ + QP+ ++ L ++N+ D
Sbjct: 14 EGESARFTCTVTGDPD-PTVSWFKDGQPLRSSDRFKVTYEGGTYTLTISNVQP--DDEGK 70
Query: 368 VKCEVHNDVGKSEDSETLDV 387
C N G++E S L V
Sbjct: 71 YTCVATNSAGEAEASAELTV 90
Score = 27.6 bits (62), Expect = 8.1
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 250 EGTDVRLYCKAEANPSHMKYRWYINDQPVP 279
EG R C +P W+ + QP+
Sbjct: 14 EGESARFTCTVTGDPD-PTVSWFKDGQPLR 42
>gnl|CDD|143236 cd05759, Ig2_KIRREL3-like, Second immunoglobulin (Ig)-like domain
of Kirrel (kin of irregular chiasm-like) 3 (also known
as Neph2). Ig2_KIRREL3-like: domain similar to the
second immunoglobulin (Ig)-like domain of Kirrel (kin of
irregular chiasm-like) 3 (also known as Neph2). This
protein has five Ig-like domains, one transmembrane
domain, and a cytoplasmic tail. Included in this group
is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and
Drosophila RST (irregular chiasm C-roughest) protein.
These proteins contain multiple Ig domains, have
properties of cell adhesion molecules, and are important
in organ development.
Length = 82
Score = 53.2 bits (128), Expect = 7e-09
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 153 LECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFT 212
L C + KP AEI W G V+ ++E DG+R T STL +TP TFT
Sbjct: 4 LTCRARGAKPAAEIIWFR-DGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFT 62
Query: 213 CQAQNTA 219
C+A+N A
Sbjct: 63 CRARNEA 69
Score = 32.8 bits (75), Expect = 0.11
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 650 CSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCS 709
C A P ++ W GE + G++ +L+D +E STL I S HD + C
Sbjct: 6 CRARGAKPAAEIIWFRDGEVLD-GATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCR 64
Query: 710 VSNP 713
N
Sbjct: 65 ARNE 68
>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain. Ig: immunoglobulin (Ig) domain
found in the Ig superfamily. The Ig superfamily is a
heterogenous group of proteins, built on a common fold
comprised of a sandwich of two beta sheets. Members of
this group are components of immunoglobulin, neuroglia,
cell surface glycoproteins, such as, T-cell receptors,
CD2, CD4, CD8, and membrane glycoproteins, such as,
butyrophilin and chondroitin sulfate proteoglycan core
protein. A predominant feature of most Ig domains is a
disulfide bridge connecting the two beta-sheets with a
tryptophan residue packed against the disulfide bond.
Length = 74
Score = 48.6 bits (115), Expect = 2e-07
Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 3/76 (3%)
Query: 646 ARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGV 705
+ C A PPP +TW G+ + STL I + G
Sbjct: 1 VTLTCLASGPPPPT-ITWLKNGKPLPSSVLTRVRSSRGTSSGS--STLTISNVTLEDSGT 57
Query: 706 YNCSVSNPYGSDSVEI 721
Y C SN G+ S +
Sbjct: 58 YTCVASNSAGTVSASV 73
Score = 42.9 bits (100), Expect = 2e-05
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 151 IELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTT 210
+ L C A+G PP ITW+ + S+V ++ STL ++ + T
Sbjct: 1 VTLTC-LASGPPPPTITWLKNGKPLPSSVLTRV--RSSRGTSSGSSTLTISNVTLEDSGT 57
Query: 211 FTCQAQNTADRTYKVAR 227
+TC A N+A
Sbjct: 58 YTCVASNSAGTVSASVT 74
Score = 41.3 bits (96), Expect = 9e-05
Identities = 16/69 (23%), Positives = 20/69 (28%), Gaps = 5/69 (7%)
Query: 45 VTLPCRVIDKTGV-LQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDA 103
VTL C + W K+ L G +L I V L+D
Sbjct: 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSS----RGTSSGSSTLTISNVTLEDSG 56
Query: 104 RYQCQVSTG 112
Y C S
Sbjct: 57 TYTCVASNS 65
Score = 38.2 bits (88), Expect = 0.001
Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 13/63 (20%)
Query: 408 VNLLCDVDGNPAPEITWIHED-------------SDKVVGNSPNLTLLMTSDDLAGRYYC 454
V L C G P P ITW+ S S LT+ + + +G Y C
Sbjct: 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60
Query: 455 KAS 457
AS
Sbjct: 61 VAS 63
Score = 38.2 bits (88), Expect = 0.001
Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 13/63 (20%)
Query: 562 VNLLCDVDGNPAPEITWIHED-------------SDKVVGNSPNLTLLMTSDDLAGRYYC 608
V L C G P P ITW+ S S LT+ + + +G Y C
Sbjct: 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60
Query: 609 KAS 611
AS
Sbjct: 61 VAS 63
>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain. This family contains
immunoglobulin-like domains.
Length = 74
Score = 47.8 bits (113), Expect = 5e-07
Identities = 20/84 (23%), Positives = 29/84 (34%), Gaps = 10/84 (11%)
Query: 134 PPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTT 193
P I + T + L C + G PP I+W + G +
Sbjct: 1 KPVITVSPSPSVTSGGGVTLTCSAEGGPPPPTISWYRNGSISGGS----------GGLGS 50
Query: 194 VKSTLVLTPKKEHHNTTFTCQAQN 217
STL L+ + T+TC A N
Sbjct: 51 SGSTLTLSSVTSEDSGTYTCVASN 74
Score = 43.9 bits (103), Expect = 1e-05
Identities = 21/84 (25%), Positives = 28/84 (33%), Gaps = 10/84 (11%)
Query: 629 RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688
+P I + G + CSA PPP ++W G G S
Sbjct: 1 KPVITVSPSPSVTSGGGVTLTCSAEGGPPPPTISWYRNGSISGGSGGLGSSG-------- 52
Query: 689 IKSTLIIRESRHDHFGVYNCSVSN 712
STL + + G Y C SN
Sbjct: 53 --STLTLSSVTSEDSGTYTCVASN 74
Score = 33.5 bits (76), Expect = 0.051
Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 5/73 (6%)
Query: 306 QVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAA----ASATELYLTNITR 361
++V S + G V L C AE P WY N + +S + L L+++T
Sbjct: 3 VITVSPSPSVTSGGGVTLTCSAEGGPPPPTISWYRNGSISGGSGGLGSSGSTLTLSSVTS 62
Query: 362 HQHDSIVKCEVHN 374
C N
Sbjct: 63 E-DSGTYTCVASN 74
Score = 31.6 bits (71), Expect = 0.31
Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 7/76 (9%)
Query: 235 APKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAA----ASATELYLT 290
P + VS S G V L C AE P WY N + +S + L L+
Sbjct: 1 KPVITVSPSPSV--TSGGGVTLTCSAEGGPPPPTISWYRNGSISGGSGGLGSSGSTLTLS 58
Query: 291 NITRHQHDSIVKCEVQ 306
++T C
Sbjct: 59 SVTSE-DSGTYTCVAS 73
Score = 30.4 bits (68), Expect = 0.62
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 399 SVQVDRGAGVNLLCDVDGNP-APEITWIHEDSDKVVGNSPN-----LTLLMTSDDLAGRY 452
S V G GV L C +G P P I+W S LTL + + +G Y
Sbjct: 9 SPSVTSGGGVTLTCSAEGGPPPPTISWYRNGSISGGSGGLGSSGSTLTLSSVTSEDSGTY 68
Query: 453 YCKAS 457
C AS
Sbjct: 69 TCVAS 73
Score = 30.4 bits (68), Expect = 0.62
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 553 SVQVDRGAGVNLLCDVDGNP-APEITWIHEDSDKVVGNSPN-----LTLLMTSDDLAGRY 606
S V G GV L C +G P P I+W S LTL + + +G Y
Sbjct: 9 SPSVTSGGGVTLTCSAEGGPPPPTISWYRNGSISGGSGGLGSSGSTLTLSSVTSEDSGTY 68
Query: 607 YCKAS 611
C AS
Sbjct: 69 TCVAS 73
Score = 29.7 bits (66), Expect = 1.2
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 475 RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSE 534
+P I + G + CSA PPP ++W YR I GS S + + S
Sbjct: 1 KPVITVSPSPSVTSGGGVTLTCSAEGGPPPPTISW-YRNGSISGGSGGLGSSGSTLTLSS 59
Query: 535 DSETLDVTY 543
+ TY
Sbjct: 60 VTSEDSGTY 68
Score = 29.3 bits (65), Expect = 1.9
Identities = 14/80 (17%), Positives = 21/80 (26%), Gaps = 14/80 (17%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTG--VLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYS 91
+ G VTL C + W ++ G L +
Sbjct: 7 SPSPSVTSGGGVTLTCSAEGGPPPPTISWYRNGSISGGSGGLGS------------SGST 54
Query: 92 LEIYPVMLDDDARYQCQVST 111
L + V +D Y C S
Sbjct: 55 LTLSSVTSEDSGTYTCVASN 74
>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type.
Length = 63
Score = 45.5 bits (108), Expect = 2e-06
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 405 GAGVNLLCDVDGNPAPEITWIHE-----DSDKVVGNSPNLTLL-MTSDDLAGRYYCKAS 457
G V L C +GNP P ITW+ + +S++ V + LT+ ++ +D +G Y C A
Sbjct: 2 GQSVTLTCPAEGNPVPNITWLKDGKPLPESNRFVASGSTLTIKSVSLED-SGLYTCVAE 59
Score = 45.5 bits (108), Expect = 2e-06
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 559 GAGVNLLCDVDGNPAPEITWIHE-----DSDKVVGNSPNLTLL-MTSDDLAGRYYCKAS 611
G V L C +GNP P ITW+ + +S++ V + LT+ ++ +D +G Y C A
Sbjct: 2 GQSVTLTCPAEGNPVPNITWLKDGKPLPESNRFVASGSTLTIKSVSLED-SGLYTCVAE 59
Score = 43.2 bits (102), Expect = 1e-05
Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 11/74 (14%)
Query: 642 PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHD 701
G + + C A P P +TW G+ + + + STL I+ +
Sbjct: 1 EGQSVTLTCPAEGNPVPN-ITWLKDGKPL----PESNRFVAS------GSTLTIKSVSLE 49
Query: 702 HFGVYNCSVSNPYG 715
G+Y C N G
Sbjct: 50 DSGLYTCVAENSAG 63
Score = 37.4 bits (87), Expect = 0.001
Identities = 16/70 (22%), Positives = 19/70 (27%), Gaps = 13/70 (18%)
Query: 42 GSRVTLPCRVIDKTGV-LQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLD 100
G VTL C + W KD L +L I V L+
Sbjct: 2 GQSVTLTCPAEGNPVPNITWLKDGKPLPESNRFV------------ASGSTLTIKSVSLE 49
Query: 101 DDARYQCQVS 110
D Y C
Sbjct: 50 DSGLYTCVAE 59
Score = 34.7 bits (80), Expect = 0.018
Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 13/72 (18%)
Query: 147 EDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKE 205
E + + L C A G P ITW+ DG SN R STL +
Sbjct: 1 EGQSVTLTCP-AEGNPVPNITWLKDGKPLPESN-----------RFVASGSTLTIKSVSL 48
Query: 206 HHNTTFTCQAQN 217
+ +TC A+N
Sbjct: 49 EDSGLYTCVAEN 60
Score = 29.3 bits (66), Expect = 1.2
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 8/66 (12%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT----ELYLTNITRHQHDS-IVKCE 371
EG V L C AE NP W + +P+P + L + +++ DS + C
Sbjct: 1 EGQSVTLTCPAEGNPVP-NITWLKDGKPLPESNRFVASGSTLTIKSVSL--EDSGLYTCV 57
Query: 372 VHNDVG 377
N G
Sbjct: 58 AENSAG 63
>gnl|CDD|143327 cd07703, Ig2_Nectin-2_like, Second immunoglobulin (Ig) domain of
nectin-2 (also known as poliovirus receptor related
protein 2 or CD112) and similar proteins.
Ig2_Nectin-2_like: domain similar to the second
immunoglobulin (Ig) domain of nectin-2 (also known as
poliovirus receptor related protein 2 or CD112).
Nectin-2 belongs to the nectin family comprised of four
transmembrane glycoproteins (nectins-1 through 4).
Nectins are synaptic cell adhesion molecules (CAMs)
which facilitate adhesion and signaling at various
intracellular junctions. Nectins form homophilic
cis-dimers, followed by homophilic and heterophilic
trans-dimers involved in cell-cell adhesion. Nectin-2
and nectin-3 localize at Sertoli-spermatid junctions
where they form heterophilic trans-interactions between
the cells that are essential for the formation and
maintenance of the junctions and for spermatid
development.
Length = 95
Score = 45.9 bits (109), Expect = 4e-06
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 155 CISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTC 213
C+SANG+PPA I+W T+ N T + + DG TV S L P E + TC
Sbjct: 22 CVSANGRPPARISWS---STLGGNANTTSKENGDG-TVTVTSEYSLVPTPEANGKEVTC 76
>gnl|CDD|143196 cd05719, Ig2_PVR_like, Second immunoglobulin (Ig) domain of
poliovirus receptor (PVR, also known as CD155) and
similar proteins. Ig2_PVR_like: domain similar to the
second immunoglobulin (Ig) domain of poliovirus receptor
(PVR, also known as CD155). Poliovirus (PV) binds to its
cellular receptor (PVR/CD155) to initiate infection.
CD155 is a membrane-anchored, single-span glycoprotein;
its extracellular region has three Ig-like domains.
There are four different isotypes of CD155 (referred to
as alpha, beta, gamma, and delta), these result from
alternate splicing of the CD155 mRNA, and have identical
extracellular domains. CD155-beta and - gamma, are
secreted, CD155-alpha and delta are membrane-bound and
function as PV receptors. The virus recognition site is
contained in the amino-terminal domain, D1. Having the
virus attachment site on the receptor distal from the
plasma membrane may be important for successful
initiation of infection of cells by the virus. CD155
binds in the poliovirus "canyon", it has a footprint
similar to that of the intercellular adhesion molecule-1
receptor on human rhinoviruses. This group also includes
the second Ig-like domain of nectin-1 (also known as
poliovirus receptor related protein(PVRL)1; CD111).
Length = 95
Score = 44.6 bits (106), Expect = 9e-06
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 155 CISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTC 213
C+SANGKPPA I+W + T + + E +G TV S L P +E + TC
Sbjct: 22 CVSANGKPPATISW-ETTLGGEAETQSKENP--NG-TVTVTSEYRLVPSREANGKELTC 76
>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain
of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule),
and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth
immunoglobulin (Ig)-like domain of L1, Ng-CAM
(Neuron-glia CAM cell adhesion molecule), and NrCAM
(Ng-CAM-related). These proteins belong to the L1
subfamily of cell adhesion molecules (CAMs) and are
comprised of an extracellular region having six Ig-like
domains and five fibronectin type III domains, a
transmembrane region and an intracellular domain. These
molecules are primarily expressed in the nervous system.
L1 is associated with an X-linked recessive disorder,
X-linked hydrocephalus, MASA syndrome, or spastic
paraplegia type 1, that involves abnormalities of axonal
growth.
Length = 76
Score = 44.3 bits (105), Expect = 1e-05
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
G+T R++C A IP P +TW G I DP + TLI+ + +
Sbjct: 1 GETGRLDCEAEGIPQPT-ITWRLNGVPIEELP-------PDPRRRVDGGTLILSNVQPND 52
Query: 703 FGVYNCSVSNPYG 715
VY C+ SN +G
Sbjct: 53 TAVYQCNASNVHG 65
Score = 36.2 bits (84), Expect = 0.006
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 8/66 (12%)
Query: 152 ELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTF 211
L+C A G P ITW N EE D RR TL+L+ + + +
Sbjct: 5 RLDC-EAEGIPQPTITW-------RLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVY 56
Query: 212 TCQAQN 217
C A N
Sbjct: 57 QCNASN 62
Score = 32.8 bits (75), Expect = 0.12
Identities = 15/61 (24%), Positives = 20/61 (32%), Gaps = 8/61 (13%)
Query: 405 GAGVNLLCDVDGNPAPEITW--------IHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKA 456
G L C+ +G P P ITW + + L L + Y C A
Sbjct: 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNA 60
Query: 457 S 457
S
Sbjct: 61 S 61
Score = 32.8 bits (75), Expect = 0.12
Identities = 15/61 (24%), Positives = 20/61 (32%), Gaps = 8/61 (13%)
Query: 559 GAGVNLLCDVDGNPAPEITW--------IHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKA 610
G L C+ +G P P ITW + + L L + Y C A
Sbjct: 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNA 60
Query: 611 S 611
S
Sbjct: 61 S 61
>gnl|CDD|143285 cd05877, Ig_LP_like, Immunoglobulin (Ig)-like domain of human
cartilage link protein (LP). Ig_LP_like: immunoglobulin
(Ig)-like domain similar to that that found in human
cartilage link protein (LP). In cartilage,
chondroitin-keratan sulfate proteoglycan (CSPG),
aggrecan, forms cartilage link protein stabilized
aggregates with hyaluronan (HA). These aggregates
contribute to the tissue's load bearing properties.
Aggregates having other CSPGs substituting for aggrecan
may contribute to the structural integrity of many
different tissues. Members of the vertebrate HPLN
(hyaluronan/HA and proteoglycan binding link) protein
family are physically linked adjacent to CSPG genes.
Length = 106
Score = 43.5 bits (103), Expect = 4e-05
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 18/90 (20%)
Query: 42 GSRVTLPCR------VIDKTGV-LQWTK---DDF-------ALGPH-RNLSGFDRYAMIG 83
G VTLPCR + + ++WTK D A+G ++ + +
Sbjct: 2 GGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLR 61
Query: 84 SDEEGDYSLEIYPVMLDDDARYQCQVSTGI 113
+ D SL I + L+D RY+C+V G+
Sbjct: 62 RAHDLDASLVITDLRLEDYGRYRCEVIDGL 91
>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain. This domain contains
immunoglobulin-like domains.
Length = 80
Score = 42.4 bits (100), Expect = 4e-05
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 396 RPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPN--LTLLMTSDDLAGRYY 453
P V G V L C GNP P TW + + +S N T ++++D +G Y
Sbjct: 5 TPSPTVVFEGEDVTLTCSAPGNPPPNYTWYKDGV--PLSSSQNGFFTPNVSAED-SGTYT 61
Query: 454 CKAS 457
C AS
Sbjct: 62 CVAS 65
Score = 42.4 bits (100), Expect = 4e-05
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 550 RPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPN--LTLLMTSDDLAGRYY 607
P V G V L C GNP P TW + + +S N T ++++D +G Y
Sbjct: 5 TPSPTVVFEGEDVTLTCSAPGNPPPNYTWYKDGV--PLSSSQNGFFTPNVSAED-SGTYT 61
Query: 608 CKAS 611
C AS
Sbjct: 62 CVAS 65
Score = 36.3 bits (84), Expect = 0.006
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
Query: 314 RLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVH 373
+ EG DV L C A NP Y WY + P+ S+ + T + C
Sbjct: 10 VVFEGEDVTLTCSAPGNP-PPNYTWYKDGVPLS---SSQNGFFTPNVSAEDSGTYTCVAS 65
Query: 374 NDVGKSEDSETLDVT 388
N G + S + +T
Sbjct: 66 NGGG-GKTSNPVTLT 79
Score = 34.7 bits (80), Expect = 0.021
Identities = 23/97 (23%), Positives = 28/97 (28%), Gaps = 22/97 (22%)
Query: 33 EPQDQTAVVGSRVTLPCRVIDKTGV-LQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYS 91
P G VTL C W KD L +N ++
Sbjct: 5 TPSPTVVFEGEDVTLTCSAPGNPPPNYTWYKDGVPLSSSQNGF---------------FT 49
Query: 92 LEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
V +D Y C S G G+ S TLTV
Sbjct: 50 PN---VSAEDSGTYTCVASNGGGGKT---SNPVTLTV 80
Score = 32.4 bits (74), Expect = 0.14
Identities = 19/77 (24%), Positives = 26/77 (33%), Gaps = 7/77 (9%)
Query: 235 APKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITR 294
P + S + EG DV L C A NP Y WY + P+ S+ + T
Sbjct: 1 KPVLTPSPT---VVFEGEDVTLTCSAPGNP-PPNYTWYKDGVPLS---SSQNGFFTPNVS 53
Query: 295 HQHDSIVKCEVQVSVIG 311
+ C G
Sbjct: 54 AEDSGTYTCVASNGGGG 70
Score = 29.7 bits (67), Expect = 1.3
Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 21/96 (21%)
Query: 629 RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688
+P + T G+ + CSA PP TW G + + +
Sbjct: 1 KPVLTPSPTVV-FEGEDVTLTCSA-PGNPPPNYTWYKDGVPLSSSQNGFF---------- 48
Query: 689 IKSTLIIRESRHDHFGVYNCSVSNPYG---SDSVEI 721
T + G Y C SN G S+ V +
Sbjct: 49 ---TPNVSAE---DSGTYTCVASNGGGGKTSNPVTL 78
>gnl|CDD|143238 cd05761, Ig2_Necl-1-4_like, Second immunoglobulin (Ig)-like domain
of the nectin-like molecules Necl-1 - Necl-4 (also known
as cell adhesion molecules CADM3, CADM1, CADM2, and
CADM4, respectively). Ig2_Necl-1-4_like: domain similar
to the second immunoglobulin (Ig)-like domain of the
nectin-like molecules Necl-1 (also known as cell
adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3
(CADM2) and Necl-4 (CADM4). These nectin-like molecules
have similar domain structures to those of nectins. At
least five nectin-like molecules have been identified
(Necl-1 - Necl-5). These have an extracellular region
containing three Ig-like domains, one transmembrane
region, and one cytoplasmic region. The N-terminal
Ig-like domain of the extracellular region belongs to
the V-type subfamily of Ig domains, is essential to
cell-cell adhesion, and plays a part in the interaction
with the envelope glycoprotein D of various viruses.
Necl-1 and Necl-2 have Ca(2+)-independent homophilic and
heterophilic cell-cell adhesion activity. Necl-1 is
specifically expressed in neural tissue and is important
to the formation of synapses, axon bundles, and
myelinated axons. Necl-2 is expressed in a wide variety
of tissues, and is a putative tumour suppressor gene,
which is downregulated in aggressive neuroblastoma.
Necl-3 has been shown to accumulate in tissues of the
central and peripheral nervous system, where it is
expressed in ependymal cells and myelinated axons. It
is observed at the interface between the axon shaft and
the myelin sheath. Necl-4 is expressed on Schwann cells,
and plays a key part in initiating peripheral nervous
system (PNS) myelination. Necl-4 participates in
cell-cell adhesion and is proposed to play a role in
tumor suppression.
Length = 82
Score = 42.3 bits (100), Expect = 6e-05
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 150 EIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNT 209
E+EL C S+ KP A I W G + E+ + G+ TV S+L +E
Sbjct: 1 EVELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDEN--GKTFTVTSSLRFQVDREDDGA 58
Query: 210 TFTCQAQNTA 219
C+ + A
Sbjct: 59 PIICRVDHPA 68
>gnl|CDD|219514 pfam07686, V-set, Immunoglobulin V-set domain. This domain is
found in antibodies as well as neural protein P0 and
CTL4 amongst others.
Length = 114
Score = 41.8 bits (98), Expect = 2e-04
Identities = 23/90 (25%), Positives = 31/90 (34%), Gaps = 15/90 (16%)
Query: 38 TAVVGSRVTLPCRVI--DKTGVLQWTKDDFALGPHRNLSGF-------------DRYAMI 82
T G VTLPC + + W K GP + R +
Sbjct: 12 TVAEGGSVTLPCSFSSSSGSTSVYWYKQPLGKGPELIIHYVTSTPNGKVGPRFKGRVTLS 71
Query: 83 GSDEEGDYSLEIYPVMLDDDARYQCQVSTG 112
G+ + D+SL I + L D Y C VS
Sbjct: 72 GNGSKNDFSLTISNLRLSDSGTYTCAVSNP 101
>gnl|CDD|143298 cd05890, Ig2_Nectin-1_like, Second immunoglobulin (Ig) domain of
nectin-1 (also known as poliovirus receptor related
protein 1, or as CD111) and similar proteins.
Ig2_Nectin-1_like: domain similar to the second
immunoglobulin (Ig) domain of nectin-1 (also known as
poliovirus receptor related protein 1, or as CD111).
Nectin-1 belongs to the nectin family comprised of four
transmembrane glycoproteins (nectins-1 through 4).
Nectins are synaptic cell adhesion molecules (CAMs)
which facilitate adhesion and signaling at various
intracellular junctions. Nectins form homophilic
cis-dimers, followed by homophilic and heterophilic
trans-dimers involved in cell-cell adhesion. Nectins
also heterophilically trans-interact with other CAMs
such as nectin-like molecules (necls); nectin-1 for
example, has been shown to trans-interact with necl-1.
Nectins also interact with various other proteins,
including the actin filament (F-actin)-binding protein,
afadin. Mutation in the human nectin-1 gene is
associated with cleft lip/palate ectodermal dysplasia
syndrome (CLPED1). Nectin-1 is a major receptor for
herpes simplex virus through interaction with the viral
envelope glycoprotein D.
Length = 98
Score = 41.5 bits (97), Expect = 2e-04
Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 14/72 (19%)
Query: 155 CISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRT-----TVKSTLVLTPKKEHHNT 209
C+SANGKPP+ + W + R+ EA R TV S L P +E H
Sbjct: 27 CVSANGKPPSVVRW---------DTRLKGEAEFQEIRNQNGTVTVISRYRLVPSREAHKQ 77
Query: 210 TFTCQAQNTADR 221
TC DR
Sbjct: 78 KLTCIVNYRNDR 89
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like. Vta1 (VPS20-associated protein 1) is
a positive regulator of Vps4. Vps4 is an ATPase that is
required in the multivesicular body (MVB) sorting
pathway to dissociate the endosomal sorting complex
required for transport (ESCRT). Vta1 promotes correct
assembly of Vps4 and stimulates its ATPase activity
through its conserved Vta1/SBP1/LIP5 region.
Length = 315
Score = 44.3 bits (105), Expect = 2e-04
Identities = 21/105 (20%), Positives = 28/105 (26%), Gaps = 2/105 (1%)
Query: 877 QTLPKLAPSPHLPPSLSNSVIVTDKTPPPSHLTISSNSVDPRYSATYGNPYLRQS--PNL 934
+ + + + PS SS V S S P
Sbjct: 156 EEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPA 215
Query: 935 PPPHTGQPPPPPYSSVRNGALPQATRLPSSPTSQFIVPNNTNHST 979
P PPP S N + P P P Q + P +T T
Sbjct: 216 PSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPT 260
Score = 32.7 bits (75), Expect = 0.84
Identities = 22/103 (21%), Positives = 33/103 (32%), Gaps = 16/103 (15%)
Query: 880 PKLAPSPHLPPSLSNSVIVTDKTPPPSHLTISSNSVDPRYSATYGNPYLRQSPNLP--PP 937
P P + +D + PP+ P + P +SP P PP
Sbjct: 189 SSSPGVPSFPSPPEDPSSPSDSSLPPA----------PSSFQSDTPPPSPESPTNPSPPP 238
Query: 938 HTGQPPPPPYSSVRNGALPQATRLPSSPTSQFIVPNNTNHSTS 980
PPPPP V P +T P+ P++ +
Sbjct: 239 GPAAPPPPPVQQVP----PLSTAKPTPPSASATPAPIGGITLD 277
>gnl|CDD|143191 cd05714, Ig_CSPGs_LP, Immunoglobulin (Ig)-like domain of
chondroitin sulfate proteoglycans (CSPGs), human
cartilage link protein (LP) and similar proteins.
Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to
that found in chondroitin sulfate proteoglycans (CSPGs)
and human cartilage link protein (LP). Included in this
group are the CSPGs aggrecan, versican, and neurocan. In
CSPGs this Ig-like domain is followed by hyaluronan
(HA)-binding tandem repeats, and a C-terminal region
with epidermal growth factor-like, lectin-like, and
complement regulatory protein-like domains. Separating
these N- and C-terminal regions is a nonhomologous
glycosaminoglycan attachment region. In cartilage,
aggrecan forms cartilage link protein stabilized
aggregates with hyaluronan (HA). These aggregates
contribute to the tissue's load bearing properties.
Aggrecan and versican have a wide distribution in
connective tissue and extracellular matrices. Neurocan
is localized almost exclusively in nervous tissue.
Aggregates having other CSPGs substituting for aggrecan
may contribute to the structural integrity of many
different tissues. There is considerable evidence that
HA-binding CSPGs are involved in developmental processes
in the central nervous system. Members of the vertebrate
HPLN (hyaluronan/HA and proteoglycan binding link)
protein family are physically linked adjacent to CSPG
genes.
Length = 106
Score = 40.3 bits (95), Expect = 4e-04
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 18/90 (20%)
Query: 42 GSRVTLPCRVIDKTGV-------LQWTK---DDF-------ALGPHRNLSGFDRYAMIG- 83
G VTLPCR + + ++WTK D A+G + G R +
Sbjct: 2 GGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLY 61
Query: 84 SDEEGDYSLEIYPVMLDDDARYQCQVSTGI 113
+ GD SL I + L+D RY+C+V GI
Sbjct: 62 PADPGDASLVITDLRLEDSGRYRCEVIDGI 91
>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain
of human titin C terminus and similar proteins.
Ig5_Titin_like: domain similar to the M5, fifth
immunoglobulin (Ig)-like domain from the human titin C
terminus. Titin (also called connectin) is a fibrous
sarcomeric protein specifically found in vertebrate
striated muscle. Titin is gigantic; depending on isoform
composition it ranges from 2970 to 3700 kDa, and is of a
length that spans half a sarcomere. Titin largely
consists of multiple repeats of Ig-like and fibronectin
type 3 (FN-III)-like domains. Titin connects the ends of
myosin thick filaments to Z disks and extends along the
thick filament to the H zone, and appears to function
similar to an elastic band, keeping the myosin filaments
centered in the sarcomere during muscle contraction or
stretching.
Length = 92
Score = 40.0 bits (93), Expect = 5e-04
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 388 TYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHE 427
T +P S+ V G CDVDG PAP +TW+ E
Sbjct: 1 TLPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMRE 40
Score = 40.0 bits (93), Expect = 5e-04
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 542 TYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHE 581
T +P S+ V G CDVDG PAP +TW+ E
Sbjct: 1 TLPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMRE 40
>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in
neogenin and similar proteins. Ig1_Neogenin: first
immunoglobulin (Ig)-like domain in neogenin and related
proteins. Neogenin is a cell surface protein which is
expressed in the developing nervous system of vertebrate
embryos in the growing nerve cells. It is also expressed
in other embryonic tissues, and may play a general role
in developmental processes such as cell migration,
cell-cell recognition, and tissue growth regulation.
Included in this group is the tumor suppressor protein
DCC, which is deleted in colorectal carcinoma . DCC and
neogenin each have four Ig-like domains followed by six
fibronectin type III domains, a transmembrane domain,
and an intracellular domain.
Length = 95
Score = 39.8 bits (93), Expect = 5e-04
Identities = 34/105 (32%), Positives = 43/105 (40%), Gaps = 17/105 (16%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRV-IDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEG 88
F EP D AV G V L C + ++W KD G NL +R +
Sbjct: 2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKD----GVLLNLVSDERRQQL-----P 52
Query: 89 DYSLEIYPVM-----LDDDARYQCQVSTGILGEPAIRSRFATLTV 128
+ SL I V+ D+ YQC LG +I SR A LTV
Sbjct: 53 NGSLLITSVVHSKHNKPDEGFYQCVAQNDSLG--SIVSRTARLTV 95
Score = 32.8 bits (75), Expect = 0.16
Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 17/85 (20%)
Query: 392 RFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVVGNSPNLTLLMT- 444
F + P + RG V L C +G P P+I W ++ SD+ PN +LL+T
Sbjct: 1 WFLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITS 60
Query: 445 --------SDDLAGRYYCKASVMGF 461
D+ G Y C A
Sbjct: 61 VVHSKHNKPDE--GFYQCVAQNDSL 83
Score = 32.8 bits (75), Expect = 0.16
Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 17/85 (20%)
Query: 546 RFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVVGNSPNLTLLMT- 598
F + P + RG V L C +G P P+I W ++ SD+ PN +LL+T
Sbjct: 1 WFLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITS 60
Query: 599 --------SDDLAGRYYCKASVMGF 615
D+ G Y C A
Sbjct: 61 VVHSKHNKPDE--GFYQCVAQNDSL 83
Score = 32.1 bits (73), Expect = 0.30
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 12/79 (15%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLI--IRESRH 700
G + CSA PPP K+ W G + + S + L + S LI + S+H
Sbjct: 14 GGPVVLNCSAEGEPPP-KIEWKKDGVLLNLVSDERRQQLPN------GSLLITSVVHSKH 66
Query: 701 DHF--GVYNCSVSN-PYGS 716
+ G Y C N GS
Sbjct: 67 NKPDEGFYQCVAQNDSLGS 85
>gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily.
Ig_2: subgroup of the immunoglobulin (Ig) domain found
in the Ig superfamily. The Ig superfamily is a
heterogenous group of proteins, built on a common fold
comprised of a sandwich of two beta sheets. Members of
the Ig superfamily are components of immunoglobulin,
neuroglia, cell surface glycoproteins, such as T-cell
receptors, CD2, CD4, CD8, and membrane glycoproteins,
such as butyrophilin and chondroitin sulfate
proteoglycan core protein. A predominant feature of most
Ig domains is a disulfide bridge connecting the two
beta-sheets with a tryptophan residue packed against the
disulfide bond.
Length = 74
Score = 37.9 bits (88), Expect = 0.002
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 405 GAGVNLLCDVDGNPAPEITWIHEDSDKVVGNS------PNLTL--LMTSDDLAGRYYCKA 456
G L C G+P P I WI D K++ NS N TL L+T+ G + C A
Sbjct: 1 GQRATLRCKARGDPEPAIHWISPD-GKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIA 59
Query: 457 S 457
S
Sbjct: 60 S 60
Score = 37.9 bits (88), Expect = 0.002
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 559 GAGVNLLCDVDGNPAPEITWIHEDSDKVVGNS------PNLTL--LMTSDDLAGRYYCKA 610
G L C G+P P I WI D K++ NS N TL L+T+ G + C A
Sbjct: 1 GQRATLRCKARGDPEPAIHWISPD-GKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIA 59
Query: 611 S 611
S
Sbjct: 60 S 60
Score = 29.0 bits (65), Expect = 2.3
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 15/70 (21%)
Query: 153 LECISANGKPPAEITWIDGTGTVMSN---VRVTEEASVDGRRTTVKSTLVLTPKKEHHNT 209
L C A G P I WI G ++SN V + ++D TTVK T
Sbjct: 6 LRC-KARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDT-----------G 53
Query: 210 TFTCQAQNTA 219
+FTC A N A
Sbjct: 54 SFTCIASNAA 63
>gnl|CDD|143242 cd05765, Ig_3, Subgroup of the immunoglobulin (Ig) superfamily.
Ig_3: subgroup of the immunoglobulin (Ig) domain found
in the Ig superfamily. The Ig superfamily is a
heterogenous group of proteins, built on a common fold
comprised of a sandwich of two beta sheets. Members of
the Ig superfamily are components of immunoglobulin,
neuroglia, cell surface glycoproteins, such as T-cell
receptors, CD2, CD4, CD8, and membrane glycoproteins,
such as butyrophilin and chondroitin sulfate
proteoglycan core protein. A predominant feature of most
Ig domains is a disulfide bridge connecting the two
beta-sheets with a tryptophan residue packed against the
disulfide bond.
Length = 81
Score = 36.8 bits (85), Expect = 0.005
Identities = 21/66 (31%), Positives = 24/66 (36%), Gaps = 14/66 (21%)
Query: 405 GAGVNLLCDVDGNPAPEITWIHEDSDK--------------VVGNSPNLTLLMTSDDLAG 450
G + CDV G P PEITW + K VV N L + AG
Sbjct: 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAG 60
Query: 451 RYYCKA 456
Y C A
Sbjct: 61 LYTCTA 66
Score = 36.8 bits (85), Expect = 0.005
Identities = 21/66 (31%), Positives = 24/66 (36%), Gaps = 14/66 (21%)
Query: 559 GAGVNLLCDVDGNPAPEITWIHEDSDK--------------VVGNSPNLTLLMTSDDLAG 604
G + CDV G P PEITW + K VV N L + AG
Sbjct: 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAG 60
Query: 605 RYYCKA 610
Y C A
Sbjct: 61 LYTCTA 66
>gnl|CDD|143291 cd05883, Ig2_Necl-2, Second immunoglobulin (Ig)-like domain of
nectin-like molecule 2 (also known as cell adhesion
molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin
(Ig)-like domain of nectin-like molecule 2 (also known
as cell adhesion molecule 1 (CADM1)). Nectin-like
molecules (Necls) have similar domain structures to
those of nectins. At least five nectin-like molecules
have been identified (Necl-1 - Necl-5). These have an
extracellular region containing three Ig-like domains,
one transmembrane region, and one cytoplasmic region.
Necl-2 has Ca(2+)-independent homophilic and
heterophilic cell-cell adhesion activity. Necl-1 is
expressed in a wide variety of tissues, and is a
putative tumour suppressor gene, which is downregulated
in aggressive neuroblastoma. Ig domains are likely to
participate in ligand binding and recognition.
Length = 82
Score = 36.5 bits (84), Expect = 0.005
Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 150 EIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNT 209
EIEL C + KP A I W G + V E S R TV S L+L KE
Sbjct: 1 EIELNCTAMASKPAATIRWFKGNKELTGKSTVEETWS---RMFTVTSQLMLKVTKEDDGV 57
Query: 210 TFTCQAQNTA 219
C + A
Sbjct: 58 PVICLVDHPA 67
>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like
domain of a follistatin-like molecule encoded by the
Mahya gene and similar proteins. Ig2_Follistatin_like:
domain similar to the second immunoglobulin (Ig)-like
domain found in a follistatin-like molecule encoded by
the CNS-related Mahya gene. Mahya genes have been
retained in certain Bilaterian branches during
evolution. They are conserved in Hymenoptera and
Deuterostomes, but are absent from other metazoan
species such as fruit fly and nematode. Mahya proteins
are secretory, with a follistatin-like domain
(Kazal-type serine/threonine protease inhibitor domain
and EF-hand calcium-binding domain), two Ig-like
domains, and a novel C-terminal domain. Mahya may be
involved in learning and memory and in processing of
sensory information in Hymenoptera and vertebrates.
Follistatin is a secreted, multidomain protein that
binds activins with high affinity and antagonizes their
signaling.
Length = 76
Score = 35.7 bits (82), Expect = 0.009
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
Query: 646 ARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGV 705
A + C A IP P ++TW G +I S +++ S L I R++ G
Sbjct: 1 ASLRCHAEGIPLP-RLTWLKNGMDITPKLSKQLTLI------ANGSELHISNVRYEDTGA 53
Query: 706 YNCSVSNPYGSD 717
Y C N G D
Sbjct: 54 YTCIAKNEAGVD 65
Score = 31.0 bits (70), Expect = 0.41
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 9/58 (15%)
Query: 409 NLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDL---------AGRYYCKAS 457
+L C +G P P +TW+ D S LTL+ +L G Y C A
Sbjct: 2 SLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAK 59
Score = 31.0 bits (70), Expect = 0.41
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 9/58 (15%)
Query: 563 NLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDL---------AGRYYCKAS 611
+L C +G P P +TW+ D S LTL+ +L G Y C A
Sbjct: 2 SLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAK 59
>gnl|CDD|143292 cd05884, Ig2_Necl-3, Second immunoglobulin (Ig)-like domain of
nectin-like molecule-3 (Necl-3, also known as cell
adhesion molecule 2 (CADM2)). Ig2_Necl-3: second
immunoglobulin (Ig)-like domain of nectin-like
molecule-3 (Necl-3, also known as cell adhesion molecule
2 (CADM2)). Nectin-like molecules have similar domain
structures to those of nectins. At least five
nectin-like molecules have been identified (Necl-1 -
Necl-5). These have an extracellular region containing
three Ig-like domains, one transmembrane region, and one
cytoplasmic region. Necl-3 has been shown to accumulate
in tissues of the central and peripheral nervous system,
where it is expressed in ependymal cells and myelinated
axons. It is observed at the interface between the axon
shaft and the myelin sheath. Ig domains are likely to
participate in ligand binding and recognition.
Length = 83
Score = 36.1 bits (83), Expect = 0.009
Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 151 IELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTT 210
++L C ++ KP A+I W + +V+ +E + + TV STL +
Sbjct: 2 MQLTCKTSGSKPAADIRWFKNDKEI-KDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVA 60
Query: 211 FTCQAQNTA 219
C+ + +
Sbjct: 61 IICRVDHES 69
>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of
fibroblast growth factor (FGF) receptor_like-1(FGFRL1).
Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain
of fibroblast growth factor (FGF)
receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal
peptide, three extracellular Ig-like modules, a
transmembrane segment, and a short intracellular domain.
FGFRL1 is expressed preferentially in skeletal tissues.
Similar to FGF receptors, the expressed protein
interacts specifically with heparin and with FGF2.
FGFRL1 does not have a protein tyrosine kinase domain at
its C terminus; neither does its cytoplasmic domain
appear to interact with a signaling partner. It has been
suggested that FGFRL1 may not have any direct signaling
function, but instead acts as a decoy receptor trapping
FGFs and preventing them from binding other receptors.
Length = 82
Score = 35.2 bits (81), Expect = 0.017
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 14/79 (17%)
Query: 151 IELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNT 209
+ L+C+ A+G P +ITW+ D + + + R+ K TL L K +
Sbjct: 12 VRLKCV-ASGNPRPDITWLKDNKPLTPTEIG-------ESRKK--KWTLSLKNLKPEDSG 61
Query: 210 TFTCQAQNTADR---TYKV 225
+TC N A TYKV
Sbjct: 62 KYTCHVSNRAGEINATYKV 80
Score = 31.0 bits (70), Expect = 0.48
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 405 GAGVNLLCDVDGNPAPEITWIHEDS 429
G+ V L C GNP P+ITW+ ++
Sbjct: 9 GSSVRLKCVASGNPRPDITWLKDNK 33
Score = 31.0 bits (70), Expect = 0.48
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 559 GAGVNLLCDVDGNPAPEITWIHEDS 583
G+ V L C GNP P+ITW+ ++
Sbjct: 9 GSSVRLKCVASGNPRPDITWLKDNK 33
>gnl|CDD|143302 cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) domain of cardiac
myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the
C5 immunoglobulin (Ig) domain of cardiac myosin binding
protein C (MyBP-C). MyBP_C consists of repeated domains,
Ig and fibronectin type 3, and various linkers. Three
isoforms of MYBP_C exist and are included in this group:
cardiac(c), and fast and slow skeletal muscle (s)
MyBP_C. cMYBP_C has insertions between and inside
domains and an additional cardiac-specific Ig domain at
the N-terminus. For cMYBP_C an interaction has been
demonstrated between this C5 domain and the Ig C8
domain.
Length = 86
Score = 35.2 bits (81), Expect = 0.018
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 641 IPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRH 700
+ G+ R++ P P VTWS RG++ + V S+ +I +
Sbjct: 8 VAGNKLRLDVPISGEPAP-TVTWS-RGDKAFTETEGRVRVESYK----DLSSFVIEGAER 61
Query: 701 DHFGVYNCSVSNPYGSDSVEIMLK 724
+ GVY +V+NP G D + +K
Sbjct: 62 EDEGVYTITVTNPVGEDHASLFVK 85
>gnl|CDD|143299 cd05891, Ig_M-protein_C, C-terminal immunoglobulin (Ig)-like domain
of M-protein (also known as myomesin-2).
Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like
domain of M-protein (also known as myomesin-2).
M-protein is a structural protein localized to the
M-band, a transverse structure in the center of the
sarcomere, and is a candidate for M-band bridges.
M-protein is modular consisting mainly of repetitive
IG-like and fibronectin type III (FnIII) domains, and
has a muscle-type specific expression pattern. M-protein
is present in fast fibers.
Length = 92
Score = 35.3 bits (81), Expect = 0.018
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
G T + C+ F P PE V W ++I + S+ YSV L++G ++L I+ +
Sbjct: 16 GKTLNLTCTVFGNPDPE-VIWFKNDQDIEL--SEHYSV---KLEQGKYASLTIKGVTSED 69
Query: 703 FGVYNCSVSNPYGSDSVEIML 723
G Y+ +V N YG ++V++ +
Sbjct: 70 SGKYSINVKNKYGGETVDVTV 90
Score = 33.0 bits (75), Expect = 0.13
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 397 PYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD 430
P V + G +NL C V GNP PE+ W D D
Sbjct: 8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQD 41
Score = 33.0 bits (75), Expect = 0.13
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 551 PYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD 584
P V + G +NL C V GNP PE+ W D D
Sbjct: 8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQD 41
>gnl|CDD|216887 pfam02124, Marek_A, Marek's disease glycoprotein A.
Length = 211
Score = 37.3 bits (87), Expect = 0.019
Identities = 33/132 (25%), Positives = 47/132 (35%), Gaps = 18/132 (13%)
Query: 162 PP--AEITW-IDGTGTVMSNVRVTEEASVDGRRTTVKSTLVL-TPKKEHHNTTFTCQA-- 215
PP + W DG + + DG T V STL L + + CQ
Sbjct: 3 PPRSVRLRWFEDGNPVDPGFITDATQVWTDGLFTRV-STLTLPATAGDSPPPSLRCQVTW 61
Query: 216 -QNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANP-SHMKYRWYI 273
+++ T A + V P V V R C A+ P ++ RW +
Sbjct: 62 HRDSVSETRFSAAVTPDVYPKPTVSVRFEDG---------RAVCTAKCVPRGEVRLRWLV 112
Query: 274 NDQPVPAAASAT 285
D PVPA A+
Sbjct: 113 GDDPVPAPAATV 124
>gnl|CDD|143194 cd05717, Ig1_Necl-1-3_like, First (N-terminal) immunoglobulin
(Ig)-like domain of the nectin-like molecules Necl-1 -
Necl-3 (also known as cell adhesion molecules CADM3,
CADM1, and CADM2 respectively). Ig1_Necl-1-3_like:
N-terminal immunoglobulin (Ig)-like domain of the
nectin-like molecules Necl-1 (also known as cell
adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3
(CADM2). At least five nectin-like molecules have been
identified (Necl-1 - Necl-5). They all have an
extracellular region containing three Ig-like domains, a
transmembrane region, and a cytoplasmic region. The
N-terminal Ig-like domain of the extracellular region
belongs to the V-type subfamily of Ig domains, is
essential to cell-cell adhesion, and plays a part in the
interaction with the envelope glycoprotein D of various
viruses. Necl-1, Necl-2, and Necl-3 have
Ca(2+)-independent homophilic and heterophilic cell-cell
adhesion activity. Necl-1 is specifically expressed in
neural tissue, and is important to the formation of
synapses, axon bundles, and myelinated axons. Necl-2 is
expressed in a wide variety of tissues, and is a
putative tumour suppressor gene, which is downregulated
in aggressive neuroblastoma. Necl-3 accumulates in
central and peripheral nervous system tissue, and has
been shown to selectively interact with
oligodendrocytes. This group also contains Class-I
MHC-restricted T-cell-associated molecule (CRTAM), whose
expression pattern is consistent with its expression in
Class-I MHC-restricted T-cells.
Length = 95
Score = 35.1 bits (81), Expect = 0.022
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 11/98 (11%)
Query: 35 QDQTAVVGSRVTLPCRVID-KTGVLQW---TKDDFALGPHRNLSGFDRYAMIGSDEEGDY 90
QD T V G TL CRV + LQW + R L +R ++ +
Sbjct: 5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRD-NRIQLVNFSAN-EL 62
Query: 91 SLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
S+ I V L D+ RY C + T +++ AT+TV
Sbjct: 63 SISISNVSLSDEGRYTCSLYT-----MPVQTAKATVTV 95
>gnl|CDD|143275 cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (Ig)-like domain of
the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like:
fourth immunoglobulin (Ig)-like domain of the L1 cell
adhesion molecule (CAM). L1 is comprised of an
extracellular region having six Ig-like domains and five
fibronectin type III domains, a transmembrane region and
an intracellular domain. L1 is primarily expressed in
the nervous system and is involved in its development
and function. L1 is associated with an X-linked
recessive disorder, X-linked hydrocephalus, MASA
syndrome, or spastic paraplegia type 1, that involves
abnormalities of axonal growth. This group also contains
the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Length = 76
Score = 34.5 bits (79), Expect = 0.024
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
G+TAR++C IP P +TWS G I D + LI+ + +
Sbjct: 1 GETARLDCQVEGIPTPN-ITWSINGAPIEGTDPDPRRHVS-------SGALILTDVQPSD 52
Query: 703 FGVYNCSVSNPYG 715
VY C N +G
Sbjct: 53 TAVYQCEARNRHG 65
Score = 29.9 bits (67), Expect = 1.2
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 489 GDTARVECSAFSIPPPEKVTWSYRGEEI 516
G+TAR++C IP P +TWS G I
Sbjct: 1 GETARLDCQVEGIPTPN-ITWSINGAPI 27
Score = 29.1 bits (65), Expect = 1.9
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 8/65 (12%)
Query: 153 LECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFT 212
L+C G P ITW ++ + E D RR L+LT + +
Sbjct: 6 LDC-QVEGIPTPNITW------SINGAPI-EGTDPDPRRHVSSGALILTDVQPSDTAVYQ 57
Query: 213 CQAQN 217
C+A+N
Sbjct: 58 CEARN 62
>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of
Neural Cell Adhesion Molecule NCAM-1 (NCAM).
Ig3_NCAM-1_like: domain similar to the third
immunoglobulin (Ig)-like domain of Neural Cell Adhesion
Molecule NCAM-1 (NCAM). NCAM plays important roles in
the development and regeneration of the central nervous
system, in synaptogenesis and neural migration. NCAM
mediates cell-cell and cell-substratum recognition and
adhesion via homophilic (NCAM-NCAM), and heterophilic
(NCAM-non-NCAM), interactions. NCAM is expressed as
three major isoforms having different intracellular
extensions. The extracellular portion of NCAM has five
N-terminal Ig-like domains and two fibronectin type III
domains. The double zipper adhesion complex model for
NCAM homophilic binding involves Ig1, Ig2, and Ig3. By
this model, Ig1,and Ig2 mediate dimerization of NCAM
molecules situated on the same cell surface (cis
interactions), and Ig3 domains mediate interactions
between NCAM molecules expressed on the surface of
opposing cells (trans interactions), through binding to
the Ig1 and Ig2 domains. The adhesive ability of NCAM is
modulated by the addition of polysialic acid chains to
the fifth Ig-like domain.
Length = 95
Score = 34.9 bits (80), Expect = 0.031
Identities = 29/94 (30%), Positives = 37/94 (39%), Gaps = 15/94 (15%)
Query: 391 PRFRARPYSVQV--DRGAGVNLLCDVDGNPAPEITW------IHEDSDKVVGN--SPNLT 440
P RAR V + G V L CD DG P P +TW I +K N +T
Sbjct: 2 PTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMT 61
Query: 441 LLMTSDDLAGRYYCKASVMGFPEVG-AEATVYLK 473
+L Y C A + G EA ++LK
Sbjct: 62 ILDVDKLDEAEYTCIAE----NKAGEQEAEIHLK 91
Score = 34.9 bits (80), Expect = 0.031
Identities = 29/94 (30%), Positives = 37/94 (39%), Gaps = 15/94 (15%)
Query: 545 PRFRARPYSVQV--DRGAGVNLLCDVDGNPAPEITW------IHEDSDKVVGN--SPNLT 594
P RAR V + G V L CD DG P P +TW I +K N +T
Sbjct: 2 PTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMT 61
Query: 595 LLMTSDDLAGRYYCKASVMGFPEVG-AEATVYLK 627
+L Y C A + G EA ++LK
Sbjct: 62 ILDVDKLDEAEYTCIAE----NKAGEQEAEIHLK 91
Score = 31.1 bits (70), Expect = 0.65
Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 8/82 (9%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
G + + C A P P +TW+ GE I G + YS ED S + I +
Sbjct: 18 GQSVTLACDADGFPEPT-MTWTKDGEPIESGE-EKYSFNED------GSEMTILDVDKLD 69
Query: 703 FGVYNCSVSNPYGSDSVEIMLK 724
Y C N G EI LK
Sbjct: 70 EAEYTCIAENKAGEQEAEIHLK 91
>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of
fibroblast growth factor (FGF) receptor and similar
proteins. Ig2_FGFR_like: domain similar to the second
immunoglobulin (Ig)-like domain of fibroblast growth
factor (FGF) receptor. FGF receptors bind FGF signaling
polypeptides. FGFs participate in multiple processes
such as morphogenesis, development, and angiogenesis.
FGFs bind to four FGF receptor tyrosine kinases (FGFR1,
-2, -3, -4). Receptor diversity is controlled by
alternative splicing producing splice variants with
different ligand binding characteristics and different
expression patterns. FGFRs have an extracellular region
comprised of three Ig-like domains, a single
transmembrane helix, and an intracellular tyrosine
kinase domain. Ligand binding and specificity reside in
the Ig-like domains 2 and 3, and the linker region that
connects these two. FGFR activation and signaling depend
on FGF-induced dimerization, a process involving cell
surface heparin or heparin sulfate proteoglycans. This
group also contains fibroblast growth factor (FGF)
receptor_like-1(FGFRL1). FGFRL1 does not have a protein
tyrosine kinase domain at its C terminus; neither does
its cytoplasmic domain appear to interact with a
signaling partner. It has been suggested that FGFRL1 may
not have any direct signaling function, but instead acts
as a decoy receptor trapping FGFs and preventing them
from binding other receptors.
Length = 85
Score = 33.9 bits (78), Expect = 0.056
Identities = 24/79 (30%), Positives = 30/79 (37%), Gaps = 16/79 (20%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKS-----TLIIRE 697
G T R++C A P P +TW G+ E + G K TLI+
Sbjct: 9 GSTVRLKCPASGNPRPT-ITWLKDGKPF---------KKEHRI-GGYKVRKKKWTLILES 57
Query: 698 SRHDHFGVYNCSVSNPYGS 716
G Y C V N YGS
Sbjct: 58 VVPSDSGKYTCIVENKYGS 76
Score = 29.3 bits (66), Expect = 2.1
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 11/79 (13%)
Query: 151 IELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKS-TLVLTPKKEHHNT 209
+ L+C A+G P ITW+ +E + G + K TL+L +
Sbjct: 12 VRLKCP-ASGNPRPTITWLK------DGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSG 64
Query: 210 TFTCQAQNTA---DRTYKV 225
+TC +N + TYKV
Sbjct: 65 KYTCIVENKYGSINHTYKV 83
Score = 28.1 bits (63), Expect = 5.0
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 12/64 (18%)
Query: 405 GAGVNLLCDVDGNPAPEITWIHEDSDKVVGNS--------PNLTLLMTS---DDLAGRYY 453
G+ V L C GNP P ITW+ + + TL++ S D +G+Y
Sbjct: 9 GSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSD-SGKYT 67
Query: 454 CKAS 457
C
Sbjct: 68 CIVE 71
Score = 28.1 bits (63), Expect = 5.0
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 12/64 (18%)
Query: 559 GAGVNLLCDVDGNPAPEITWIHEDSDKVVGNS--------PNLTLLMTS---DDLAGRYY 607
G+ V L C GNP P ITW+ + + TL++ S D +G+Y
Sbjct: 9 GSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSD-SGKYT 67
Query: 608 CKAS 611
C
Sbjct: 68 CIVE 71
>gnl|CDD|143180 cd04979, Ig_Semaphorin_C, Immunoglobulin (Ig)-like domain of
semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like
domain in semaphorins. Semaphorins are transmembrane
protein that have important roles in a variety of
tissues. Functionally, semaphorins were initially
characterized for their importance in the development of
the nervous system and in axonal guidance. Later they
have been found to be important for the formation and
functioning of the cardiovascular, endocrine,
gastrointestinal, hepatic, immune, musculoskeletal,
renal, reproductive, and respiratory systems.
Semaphorins function through binding to their receptors
and transmembrane semaphorins also serves as receptors
themselves. Although molecular mechanism of semaphorins
is poorly understood, the Ig-like domains may involve in
ligand binding or dimerization.
Length = 89
Score = 33.9 bits (78), Expect = 0.057
Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 12/78 (15%)
Query: 633 ISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDD--YSVLEDPLKEGIK 690
+ + G++ +ECS S V W ++G + + V ED L
Sbjct: 1 AEEKVVTVVEGNSVFLECSPKS--NLASVVWLFQGGPLQRKEEPEERLLVTEDGL----- 53
Query: 691 STLIIRESRHDHFGVYNC 708
LI S D GVY C
Sbjct: 54 --LIRSVSPADA-GVYTC 68
>gnl|CDD|143166 cd00098, IgC, Immunoglobulin Constant domain. IgC: Immunoglobulin
constant domain (IgC). Members of the IgC family are
components of immunoglobulin, T-cell receptors, CD1 cell
surface glycoproteins, secretory glycoproteins A/C, and
Major Histocompatibility Complex (MHC) class I/II
molecules. In immunoglobulins, each chain is composed of
one variable domain (IgV) and one or more IgC domains.
These names reflect the fact that the variability in
sequences is higher in the variable domain than in the
constant domain. The IgV domain is responsible for
antigen binding, and the IgC domain is involved in
oligomerization and molecular interactions.
Length = 95
Score = 34.0 bits (78), Expect = 0.069
Identities = 13/55 (23%), Positives = 21/55 (38%)
Query: 162 PPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQ 216
P +TW+ + S V T +V S L ++P + T+TC
Sbjct: 28 PDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVT 82
Score = 28.6 bits (64), Expect = 4.4
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Query: 642 PGDTARVECSAFSIPPPE-KVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRH 700
G + + C A PP+ VTW G+E+ G + V + S L + S
Sbjct: 12 LGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDW 71
Query: 701 DHFGVYNCSVS 711
+ Y C V+
Sbjct: 72 NSGDTYTCVVT 82
>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors. Ig3_Robo: domain similar to the
third immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors. Robo receptors play a role in
the development of the central nervous system (CNS), and
are receptors of Slit protein. Slit is a repellant
secreted by the neural cells in the midline. Slit acts
through Robo to prevent most neurons from crossing the
midline from either side. Three mammalian Robo homologs
(robo1, -2, and -3), and three mammalian Slit homologs
(Slit-1,-2, -3), have been identified. Commissural
axons, which cross the midline, express low levels of
Robo; longitudinal axons, which avoid the midline,
express high levels of Robo. robo1, -2, and -3 are
expressed by commissural neurons in the vertebrate
spinal cord and Slits 1, -2, -3 are expressed at the
ventral midline. Robo-3 is a divergent member of the
Robo family which instead of being a positive regulator
of slit responsiveness, antagonizes slit responsiveness
in precrossing axons. The Slit-Robo interaction is
mediated by the second leucine-rich repeat (LRR) domain
of Slit and the two N-terminal Ig domains of Robo, Ig1
and Ig2. The primary Robo binding site for Slit2 has
been shown by surface plasmon resonance experiments and
mutational analysis to be is the Ig1 domain, while the
Ig2 domain has been proposed to harbor a weak secondary
binding site.
Length = 69
Score = 33.1 bits (76), Expect = 0.070
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 10/71 (14%)
Query: 408 VNLLCDVDGNPAPEITWIHEDSDKVVG-------NSPNLTLLMTSDDLAGRYYCKA-SVM 459
V C+V G+P P + W ED + G S + + D+ G Y C+A +++
Sbjct: 1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDE--GSYTCEAENMV 58
Query: 460 GFPEVGAEATV 470
G E A TV
Sbjct: 59 GKIEASASLTV 69
Score = 33.1 bits (76), Expect = 0.070
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 10/71 (14%)
Query: 562 VNLLCDVDGNPAPEITWIHEDSDKVVG-------NSPNLTLLMTSDDLAGRYYCKA-SVM 613
V C+V G+P P + W ED + G S + + D+ G Y C+A +++
Sbjct: 1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDE--GSYTCEAENMV 58
Query: 614 GFPEVGAEATV 624
G E A TV
Sbjct: 59 GKIEASASLTV 69
>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain. Members of the
immunoglobulin superfamily are found in hundreds of
proteins of different functions. Examples include
antibodies, the giant muscle kinase titin and receptor
tyrosine kinases. Immunoglobulin-like domains may be
involved in protein-protein and protein-ligand
interactions. The Pfam alignments do not include the
first and last strand of the immunoglobulin-like domain.
Length = 62
Score = 32.5 bits (74), Expect = 0.085
Identities = 12/64 (18%), Positives = 19/64 (29%), Gaps = 6/64 (9%)
Query: 152 ELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTF 211
L C S +G P ++TW TL ++ + T+
Sbjct: 5 TLTC-SVSGPPQVDVTWF-----KEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTY 58
Query: 212 TCQA 215
TC
Sbjct: 59 TCVV 62
Score = 32.1 bits (73), Expect = 0.11
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 10/59 (16%)
Query: 408 VNLLCDVDGNPAPEITWIHED----------SDKVVGNSPNLTLLMTSDDLAGRYYCKA 456
V L C V G P ++TW E +D+ +S LT+ + + +G Y C
Sbjct: 4 VTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYTCVV 62
Score = 32.1 bits (73), Expect = 0.11
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 10/59 (16%)
Query: 562 VNLLCDVDGNPAPEITWIHED----------SDKVVGNSPNLTLLMTSDDLAGRYYCKA 610
V L C V G P ++TW E +D+ +S LT+ + + +G Y C
Sbjct: 4 VTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYTCVV 62
Score = 28.3 bits (63), Expect = 3.3
Identities = 19/69 (27%), Positives = 24/69 (34%), Gaps = 8/69 (11%)
Query: 42 GSRVTLPCRVIDKTGV-LQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLD 100
GS VTL C V V + W K+ G D + +L I V +
Sbjct: 1 GSSVTLTCSVSGPPQVDVTWFKEG-KGLEESTTVGTDE------NRVSSITLTISNVTPE 53
Query: 101 DDARYQCQV 109
D Y C V
Sbjct: 54 DSGTYTCVV 62
>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like
domain of myomesin and M-protein. Ig_Myomesin_like_C:
domain similar to the C-temrinal immunoglobulin
(Ig)-like domain of myomesin and M-protein. Myomesin and
M-protein are both structural proteins localized to the
M-band, a transverse structure in the center of the
sarcomere, and are candidates for M-band bridges. Both
proteins are modular, consisting mainly of repetitive
Ig-like and fibronectin type III (FnIII) domains.
Myomesin is expressed in all types of vertebrate
striated muscle; M-protein has a muscle-type specific
expression pattern. Myomesin is present in both slow and
fast fibers; M-protein is present only in fast fibers.
It has been suggested that myomesin acts as a molecular
spring with alternative splicing as a means of modifying
its elasticity.
Length = 92
Score = 33.3 bits (76), Expect = 0.093
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
G T + C+ F P PE V+W + + + SD Y+V +++G ++L I+ +
Sbjct: 16 GKTLNLTCTVFGDPDPE-VSWLKNDQALAL--SDHYNV---KVEQGKYASLTIKGVSSED 69
Query: 703 FGVYNCSVSNPYGSDSVEI 721
G Y V N YG ++V++
Sbjct: 70 SGKYGIVVKNKYGGETVDV 88
Score = 33.3 bits (76), Expect = 0.12
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 397 PYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD 430
P V + G +NL C V G+P PE++W+ D
Sbjct: 8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQA 41
Score = 33.3 bits (76), Expect = 0.12
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 551 PYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD 584
P V + G +NL C V G+P PE++W+ D
Sbjct: 8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQA 41
>gnl|CDD|143219 cd05742, Ig1_VEGFR_like, First immunoglobulin (Ig)-like domain of
vascular endothelial growth factor (VEGF) receptor (R)
and similar proteins. Ig1_VEGFR_like: first
immunoglobulin (Ig)-like domain of vascular endothelial
growth factor (VEGF) receptor(R) related proteins. The
VEGFRs have an extracellular component with seven
Ig-like domains, a transmembrane segment, and an
intracellular tyrosine kinase domain interrupted by a
kinase-insert domain. The VEGFR family consists of three
members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and
VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and
VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds
more weakly. VEGFR-3 appears not to bind VEGF, but binds
other members of the VEGF family (VEGF-C and -D). VEGFRs
bind VEGFs with high affinity with the IG-like domains.
VEGF-A is important to the growth and maintenance of
vascular endothelial cells and to the development of new
blood- and lymphatic-vessels in physiological and
pathological states. VEGFR-2 is a major mediator of the
mitogenic, angiogenic and microvascular
permeability-enhancing effects of VEGF-A. VEGFR-1 may
play an inhibitory part in these processes by binding
VEGF and interfering with its interaction with VEGFR-2.
VEGFR-1 has a signaling role in mediating monocyte
chemotaxis. VEGFR-2 and -1 may mediate a chemotactic and
a survival signal in hematopoietic stem cells or
leukemia cells. VEGFR-3 has been shown to be involved in
tumor angiogenesis and growth. This group also contains
alpha-type platelet-derived growth factor receptor
precursor (PDGFR)-alpha (CD140a), and PDGFR-beta
(CD140b). PDGFRs alpha and beta have an extracellular
component with five Ig-like domains, a transmembrane
segment, and a cytoplasmic portion that has protein
tyrosine kinase activity.
Length = 84
Score = 32.7 bits (75), Expect = 0.13
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 662 TWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSN 712
W+Y G++ G G S E + STL I + G Y C+ S+
Sbjct: 21 QWTYPGKKRGRGKSMVTRQSLSEATE-LSSTLTIPNATLKDSGTYTCAASS 70
>gnl|CDD|143184 cd04983, IgV_TCR_alpha_like, Immunoglobulin (Ig) variable (V)
domain of T-cell receptor (TCR) alpha chain and similar
proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable
domain of the alpha chain of alpha/beta T-cell antigen
receptors (TCRs). TCRs mediate antigen recognition by T
lymphocytes, and are composed of alpha and beta, or
gamma and delta, polypeptide chains with variable (V)
and constant (C) regions. This group represents the
variable domain of the alpha chain of TCRs and also
includes the variable domain of delta chains of TCRs.
Alpha/beta TCRs recognize antigen as peptide fragments
presented by major histocompatibility complex (MHC)
molecules. The variable domain of TCRs is responsible
for antigen recognition, and is located at the
N-terminus of the receptor. Gamma/delta TCRs recognize
intact protein antigens; they recognize proteins
antigens directly and without antigen processing, and
MHC independently of the bound peptide.
Length = 109
Score = 33.4 bits (77), Expect = 0.13
Identities = 23/89 (25%), Positives = 31/89 (34%), Gaps = 9/89 (10%)
Query: 33 EPQDQTAVVGSRVTLPCRVIDKTGV-LQWTKDDFALGP----HRNLSGF----DRYAMIG 83
PQ + G VTL C T L W + GP + + +G R++
Sbjct: 4 SPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATL 63
Query: 84 SDEEGDYSLEIYPVMLDDDARYQCQVSTG 112
SL I L D A Y C +S
Sbjct: 64 DKSRKSSSLHISAAQLSDSAVYFCALSES 92
>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors. Ig2_Robo: domain similar to the
second immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors. Robo receptors play a role in
the development of the central nervous system (CNS), and
are receptors of Slit protein. Slit is a repellant
secreted by the neural cells in the midline. Slit acts
through Robo to prevent most neurons from crossing the
midline from either side. Three mammalian Robo homologs
(robo1, -2, and -3), and three mammalian Slit homologs
(Slit-1,-2, -3), have been identified. Commissural
axons, which cross the midline, express low levels of
Robo; longitudinal axons, which avoid the midline,
express high levels of Robo. robo1, -2, and -3 are
expressed by commissural neurons in the vertebrate
spinal cord and Slits 1, -2, -3 are expressed at the
ventral midline. Robo-3 is a divergent member of the
Robo family which instead of being a positive regulator
of slit responsiveness, antagonizes slit responsiveness
in precrossing axons. The Slit-Robo interaction is
mediated by the second leucine-rich repeat (LRR) domain
of Slit and the two N-terminal Ig domains of Robo, Ig1
and Ig2. The primary Robo binding site for Slit2 has
been shown by surface plasmon resonance experiments and
mutational analysis to be is the Ig1 domain, while the
Ig2 domain has been proposed to harbor a weak secondary
binding site.
Length = 86
Score = 32.4 bits (74), Expect = 0.16
Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 11/79 (13%)
Query: 153 LECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTF 211
LEC G P ++W DG + N RV VD L++ ++ T+
Sbjct: 16 LECSPPRGHPEPTVSWRKDGQPLNLDNERVRI---VDD------GNLLIAEARKSDEGTY 66
Query: 212 TCQAQNTA-DRTYKVARLK 229
C A N +R ARL
Sbjct: 67 KCVATNMVGERESAAARLS 85
Score = 30.4 bits (69), Expect = 0.91
Identities = 27/98 (27%), Positives = 36/98 (36%), Gaps = 15/98 (15%)
Query: 33 EPQDQTAVVGSRVTLPCR--VIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDY 90
EP D VG L C + W KD L NL + D
Sbjct: 2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPL----NLDNERVRIV------DDG 51
Query: 91 SLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
+L I D+ Y+C V+T ++GE S A L+V
Sbjct: 52 NLLIAEARKSDEGTYKC-VATNMVGER--ESAAARLSV 86
Score = 29.3 bits (66), Expect = 2.3
Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 8/72 (11%)
Query: 396 RPYSVQVDRGAGVNLLCDVD-GNPAPEITWIHEDSDKVVGNSP-------NLTLLMTSDD 447
P QV G L C G+P P ++W + + N NL +
Sbjct: 2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKS 61
Query: 448 LAGRYYCKASVM 459
G Y C A+ M
Sbjct: 62 DEGTYKCVATNM 73
Score = 29.3 bits (66), Expect = 2.3
Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 8/72 (11%)
Query: 550 RPYSVQVDRGAGVNLLCDVD-GNPAPEITWIHEDSDKVVGNSP-------NLTLLMTSDD 601
P QV G L C G+P P ++W + + N NL +
Sbjct: 2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKS 61
Query: 602 LAGRYYCKASVM 613
G Y C A+ M
Sbjct: 62 DEGTYKCVATNM 73
Score = 29.3 bits (66), Expect = 2.3
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Query: 643 GDTARVECSA-FSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHD 701
G+ A +ECS P P V+W G+ + ++ +++D L+I E+R
Sbjct: 11 GEMAVLECSPPRGHPEPT-VSWRKDGQPL-NLDNERVRIVDD-------GNLLIAEARKS 61
Query: 702 HFGVYNCSVSNPYG 715
G Y C +N G
Sbjct: 62 DEGTYKCVATNMVG 75
>gnl|CDD|143293 cd05885, Ig2_Necl-4, Second immunoglobulin (Ig)-like domain of
nectin-like molecule-4 (Necl-4, also known as cell
adhesion molecule 4 (CADM4)). Ig2_Necl-4: second
immunoglobulin (Ig)-like domain of nectin-like
molecule-4 (Necl-4, also known as cell adhesion
molecule 4 (CADM4)). Nectin-like molecules have similar
domain structures to those of nectins. At least five
nectin-like molecules have been identified
(Necl-1-Necl-5). These have an extracellular region
containing three Ig-like domains, one transmembrane
region, and one cytoplasmic region. Ig domains are
likely to participate in ligand binding and recognition.
Necl-4 is expressed on Schwann cells, and plays a key
part in initiating peripheral nervous system (PNS)
myelination. In injured peripheral nerve cells, the
mRNA signal for both Necl-4 and Necl-5 was observed to
be elevated. Necl-4 participates in cell-cell adhesion
and is proposed to play a role in tumor suppression.
Length = 80
Score = 32.3 bits (73), Expect = 0.17
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 150 EIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNT 209
E+EL C+S KP A + W + + E +G+ +V +T+ ++
Sbjct: 1 EVELTCLSPRSKPAATLRWYRDRKELKGVISQQE----NGKTVSVSNTIRFPVDRKDDGA 56
Query: 210 TFTCQAQNTA 219
+C+A + A
Sbjct: 57 ILSCEASHPA 66
>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like
domain of the receptor protein tyrosine phosphatase
(RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like:
domain similar to the second immunoglobulin (Ig)-like
domain found in the receptor protein tyrosine
phosphatase (RPTP)-F, also known as LAR. LAR belongs to
the RPTP type IIa subfamily. Members of this subfamily
are cell adhesion molecule-like proteins involved in
central nervous system (CNS) development. They have
large extracellular portions, comprised of multiple
Ig-like domains and two to nine fibronectin type III
(FNIII) domains, and a cytoplasmic portion having two
tandem phosphatase domains.
Length = 74
Score = 31.9 bits (72), Expect = 0.24
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 410 LLCDVDGNPAPEITWIHE------DSDKVVGNSPNLTLLMTSDDLA--GRYYCKASVMGF 461
+LC GNP PEITW + S+ + + L + + + + G+Y C A+
Sbjct: 3 MLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAG 62
Query: 462 PEVGAEATVYLK 473
A A +Y++
Sbjct: 63 TRYSAPANLYVR 74
Score = 31.9 bits (72), Expect = 0.24
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 564 LLCDVDGNPAPEITWIHE------DSDKVVGNSPNLTLLMTSDDLA--GRYYCKASVMGF 615
+LC GNP PEITW + S+ + + L + + + + G+Y C A+
Sbjct: 3 MLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAG 62
Query: 616 PEVGAEATVYLK 627
A A +Y++
Sbjct: 63 TRYSAPANLYVR 74
>gnl|CDD|143290 cd05882, Ig1_Necl-1, First (N-terminal) immunoglobulin (Ig)-like
domain of nectin-like molcule-1 (Necl-1, also known as
cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain
similar to the N-terminal immunoglobulin (Ig)-like
domain of nectin-like molecule-1, Necl-1 (also known as
celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4).
Nectin-like molecules have similar domain structures to
those of nectins. At least five nectin-like molecules
have been identified (Necl-1 - Necl-5). They all have an
extracellular region containing three Ig-like domains, a
transmembrane region, and a cytoplasmic region. The
N-terminal Ig-like domain of the extracellular region
belongs to the V-type subfamily of Ig domains, is
essential to cell-cell adhesion, and plays a part in the
interaction with the envelope glycoprotein D of various
viruses. Necl-1 has Ca(2+)-independent homophilic and
heterophilic cell-cell adhesion activity. Necl-1 is
specifically expressed in neural tissue, and is
important to the formation of synapses, axon bundles,
and myelinated axons.
Length = 95
Score = 32.3 bits (73), Expect = 0.25
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 11/98 (11%)
Query: 35 QDQTAVVGSRVTLPCRVID-KTGVLQWT---KDDFALGPHRNLSGFDRYAMIGSDEEGDY 90
QD+T VG VTL C V + LQW+ + G R L +R ++ S +
Sbjct: 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRD-NRIQLVKSTPT-EL 62
Query: 91 SLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
+ I V L D+ Y C + T +R+ AT+TV
Sbjct: 63 IISISNVQLSDEGEYTCSIFT-----MPVRTAKATVTV 95
>gnl|CDD|143211 cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-like domain of Down
Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the
seventh immunoglobulin (Ig)-like domain of Down Syndrome
Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion
molecule expressed largely in the developing nervous
system. The gene encoding DSCAM is located at human
chromosome 21q22, the locus associated with the mental
retardation phenotype of Down Syndrome. DSCAM is
predicted to be the largest member of the IG
superfamily. It has been demonstrated that DSCAM can
mediate cation-independent homophilic intercellular
adhesion.
Length = 79
Score = 31.4 bits (71), Expect = 0.29
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
Query: 650 CSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIK----STLIIRESRHDHFGV 705
CSA PPP + W + G G L I+ +L+I+ + G
Sbjct: 5 CSAEGYPPP-TIVWKHSK---GRGHPQHTHTC--CLAGRIQLLSNGSLLIKHVLEEDSGY 58
Query: 706 YNCSVSNPYGSDSVEIM 722
Y C VSN G+D+ + M
Sbjct: 59 YLCKVSNDVGADASKSM 75
>gnl|CDD|143273 cd05865, Ig1_NCAM-1, First immunoglobulin (Ig)-like domain of
neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first
immunoglobulin (Ig)-like domain of neural cell adhesion
molecule NCAM-1. NCAM-1 plays important roles in the
development and regeneration of the central nervous
system, in synaptogenesis and neural migration. NCAM
mediates cell-cell and cell-substratum recognition and
adhesion via homophilic (NCAM-NCAM), and heterophilic
(NCAM-nonNCAM), interactions. NCAM is expressed as three
major isoforms having different intracellular
extensions. The extracellular portion of NCAM has five
N-terminal Ig-like domains and two fibronectin type III
domains. The double zipper adhesion complex model for
NCAM homophilic binding involves the Ig1, Ig2, and Ig3
domains. By this model, Ig1 and Ig2 mediate dimerization
of NCAM molecules situated on the same cell surface (cis
interactions), and Ig3 domains mediate interactions
between NCAM molecules expressed on the surface of
opposing cells (trans interactions), through binding to
the Ig1 and Ig2 domains. The adhesive ability of NCAM is
modulated by the addition of polysialic acid chains to
the fifth Ig-like domain.
Length = 96
Score = 31.9 bits (72), Expect = 0.30
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 14/78 (17%)
Query: 641 IPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRH 700
+ G+ + S FS P EK+T + + I V +DDYS STL I +
Sbjct: 24 VAGEAKDKDISWFS-PNGEKLTPNQ--QRISVVRNDDYS-----------STLTIYNANI 69
Query: 701 DHFGVYNCSVSNPYGSDS 718
D G+Y C VSN +S
Sbjct: 70 DDAGIYKCVVSNEDEGES 87
>gnl|CDD|143328 cd07704, Ig2_Nectin-3-4_like, Second immunoglobulin (Ig) domain of
nectin-3 (also known as poliovirus receptor related
protein 3), nectin-4 (poliovirus receptor related
protein 4) and similar proteins. Ig2_Nectin-3-4_like:
domain similar to the second immunoglobulin (Ig) domain
of nectin-3 (also known as poliovirus receptor related
protein 3) and nectin-4 (poliovirus receptor related
protein 4). Nectin-3 and nectin-4 belong to the nectin
family comprised of four transmembrane glycoproteins
(nectins-1 through 4). Nectins are synaptic cell
adhesion molecules (CAMs) which facilitate adhesion and
signaling at various intracellular junctions. Nectins
form homophilic cis-dimers, followed by homophilic and
heterophilic trans-dimers involved in cell-cell
adhesion. Nectin-2 and nectin-3 localize at
Sertoli-spermatid junctions where they form heterophilic
trans-interactions between the cells that are essential
for the formation and maintenance of the junctions and
for spermatid development. Nectin-3 has also been shown
to form a heterophilic trans-interaction with nectin-1
in ciliary epithelia, establishing the apex-apex
adhesion between the pigment and non-pigment cell
layers. Nectin-4 has recently been identified in
several types of breast carcinoma and can be used as a
histological and serological marker for breast cancer.
Length = 97
Score = 32.2 bits (73), Expect = 0.30
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 155 CISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTC 213
C +A G+P A++TW + S E + TTV S + P + + TC
Sbjct: 24 CCAAEGRPAADVTW-ETNVYGTSESHSQEHPN---GTTTVTSEYIWVPSRHANGHPLTC 78
>gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin.
Ig1_Contactin: First Ig domain of contactins. Contactins
are neural cell adhesion molecules and are comprised of
six Ig domains followed by four fibronectin type
III(FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. The first four Ig domains
form the intermolecular binding fragment, which arranges
as a compact U-shaped module via contacts between Ig
domains 1 and 4, and between Ig domains 2 and 3.
Contactin-2 (TAG-1, axonin-1) may play a part in the
neuronal processes of neurite outgrowth, axon guidance
and fasciculation, and neuronal migration. This group
also includes contactin-1 and contactin-5. The different
contactins show different expression patterns in the
central nervous system. During development and in
adulthood, contactin-2 is transiently expressed in
subsets of central and peripheral neurons. Contactin-5
is expressed specifically in the rat postnatal nervous
system, peaking at about 3 weeks postnatal, and a lack
of contactin-5 (NB-2) results in an impairment of
neuronal activity in the rat auditory system.
Contactin-5 is highly expressed in the adult human brain
in the occipital lobe and in the amygdala. Contactin-1
is differentially expressed in tumor tissues and may,
through a RhoA mechanism, facilitate invasion and
metastasis of human lung adenocarcinoma.
Length = 91
Score = 31.6 bits (72), Expect = 0.33
Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 10/68 (14%)
Query: 650 CSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRE-SRHDHFGVYNC 708
C A PPP W G EI YS+ + L+I S+ G Y C
Sbjct: 26 CRARGSPPP-TYRWLMNGTEIDDEPDSRYSL--------VGGNLVISNPSKAKDAGRYQC 76
Query: 709 SVSNPYGS 716
SN G+
Sbjct: 77 LASNIVGT 84
>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of
Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar
proteins. Ig5_NCAM-1 like: domain similar to the fifth
immunoglobulin (Ig)-like domain of Neural Cell Adhesion
Molecule NCAM-1 (NCAM). NCAM plays important roles in
the development and regeneration of the central nervous
system, in synaptogenesis and neural migration. NCAM
mediates cell-cell and cell-substratum recognition and
adhesion via homophilic (NCAM-NCAM), and heterophilic
(NCAM-non-NCAM), interactions. NCAM is expressed as
three major isoforms having different intracellular
extensions. The extracellular portion of NCAM has five
N-terminal Ig-like domains and two fibronectin type III
domains. The double zipper adhesion complex model for
NCAM homophilic binding involves Ig1, Ig2, and Ig3. By
this model, Ig1 and Ig2 mediate dimerization of NCAM
molecules situated on the same cell surface (cis
interactions), and Ig3 domains mediate interactions
between NCAM molecules expressed on the surface of
opposing cells (trans interactions), through binding to
the Ig1 and Ig2 domains. The adhesive ability of NCAM is
modulated by the addition of polysialic acid chains to
the fifth Ig-like domain. Also included in this group is
NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2
is differentially expressed in the developing and mature
olfactory epithelium (OE).
Length = 96
Score = 31.7 bits (72), Expect = 0.37
Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 12/89 (13%)
Query: 135 PRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTV 194
P+I + E +I L C A G P EITW T + S+DG R V
Sbjct: 3 PKITYLENQTAVELEQITLTC-EAEGDPIPEITWRRATRNFSE-----GDKSLDG-RIVV 55
Query: 195 K-----STLVLTPKKEHHNTTFTCQAQNT 218
+ S+L L + + C+A N
Sbjct: 56 RGHARVSSLTLKDVQLTDAGRYDCEASNR 84
Score = 31.0 bits (70), Expect = 0.68
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 14/64 (21%)
Query: 408 VNLLCDVDGNPAPEITW------IHEDSDKVVGN--------SPNLTLLMTSDDLAGRYY 453
+ L C+ +G+P PEITW E + G +LTL AGRY
Sbjct: 19 ITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYD 78
Query: 454 CKAS 457
C+AS
Sbjct: 79 CEAS 82
Score = 31.0 bits (70), Expect = 0.68
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 14/64 (21%)
Query: 562 VNLLCDVDGNPAPEITW------IHEDSDKVVGN--------SPNLTLLMTSDDLAGRYY 607
+ L C+ +G+P PEITW E + G +LTL AGRY
Sbjct: 19 ITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYD 78
Query: 608 CKAS 611
C+AS
Sbjct: 79 CEAS 82
Score = 28.6 bits (64), Expect = 5.1
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 6/92 (6%)
Query: 629 RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVG--SSDDYSVLEDPLK 686
+P I Q + + + C A P PE +TW G S D V+ +
Sbjct: 2 QPKITYLENQTAVELEQITLTCEAEGDPIPE-ITWRRATRNFSEGDKSLDGRIVVRGHAR 60
Query: 687 EGIKSTLIIRESRHDHFGVYNCSVSNPYGSDS 718
S+L +++ + G Y+C SN G D
Sbjct: 61 V---SSLTLKDVQLTDAGRYDCEASNRIGGDQ 89
>gnl|CDD|213055 cd12094, TM_ErbB2, Transmembrane domain of ErbB2, a Protein
Tyrosine Kinase. PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. ErbB2 (HER2, HER2/neu)
is a member of the EGFR (HER, ErbB) subfamily of
proteins, which are receptor PTKs (RTKs) containing an
extracellular EGF-related ligand-binding region, a
transmembrane (TM) helix, and a cytoplasmic region with
a tyr kinase domain and a regulatory C-terminal tail. It
is activated by ligand-induced dimerization, leading to
the phosphorylation of tyr residues in the C-terminal
tail, which serve as binding sites for downstream
signaling molecules. ErbB2 does not bind to any known
EGFR subfamily ligands, but contributes to the kinase
activity of all possible heterodimers. It acts as the
preferred partner of other ligand-bound EGFR proteins
and functions as a signal amplifier, with the
ErbB2-ErbB3 heterodimer being the most potent pair in
mitogenic signaling. The TM domain not only serves as a
membrane anchor, but also plays an important role in
receptor dimerization and optimal activation. Mutations
in the TM domain of ErbB2 have been associated with
increased breast cancer risk. ErbB2 plays an important
role in cell development, proliferation, survival and
motility. Overexpression of ErbB2 results in its
activation and downstream signaling, even in the absence
of ligand. ErbB2 overexpression, mainly due to gene
amplification, has been shown in a variety of human
cancers. Its role in breast cancer is especially
well-documented. ErbB2 is up-regulated in about 25% of
breast tumors and is associated with increases in tumor
aggressiveness, recurrence and mortality. ErbB2 is a
target for monoclonal antibodies and small molecule
inhibitors, which are being developed as treatments for
cancer. The first humanized antibody approved for
clinical use is Trastuzumab (Herceptin), which is being
used in combination with other therapies to improve the
survival rates of patients with HER2-overexpressing
breast cancer.
Length = 44
Score = 30.2 bits (68), Expect = 0.37
Identities = 13/36 (36%), Positives = 25/36 (69%)
Query: 726 QKSFPLLLILTGVIGCVVILVALTMVVILCQRKVKK 761
Q++ PL I+ GV+G ++++V L + IL +R+ +K
Sbjct: 6 QRASPLTSIIAGVVGILLVVVLLVVFGILIKRRRQK 41
>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin
and similar proteins. Ig_Titin_like: immunoglobulin
(Ig)-like domain found in titin-like proteins. Titin
(also called connectin) is a fibrous sarcomeric protein
specifically found in vertebrate striated muscle. Titin
is gigantic, depending on isoform composition it ranges
from 2970 to 3700 kDa, and is of a length that spans
half a sarcomere. Titin largely consists of multiple
repeats of Ig-like and fibronectin type 3 (FN-III)-like
domains. Titin connects the ends of myosin thick
filaments to Z disks and extends along the thick
filament to the H zone. It appears to function
similarly to an elastic band, keeping the myosin
filaments centered in the sarcomere during muscle
contraction or stretching. Within the sarcomere, titin
is also attached to or is associated with myosin binding
protein C (MyBP-C). MyBP-C appears to contribute to the
generation of passive tension by titin, and similar to
titin has repeated Ig-like and FN-III domains. Also
included in this group are worm twitchin and insect
projectin, thick filament proteins of invertebrate
muscle, which also have repeated Ig-like and FN-III
domains.
Length = 74
Score = 31.0 bits (71), Expect = 0.37
Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 19/76 (25%)
Query: 655 IPPPEKVTWSYRGEEIG------VGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC 708
P P VTWS G+ + + ++ + +L+I+ + G Y
Sbjct: 11 RPTPT-VTWSKDGKPLKLSGRVQIETTASST------------SLVIKNAERSDSGKYTL 57
Query: 709 SVSNPYGSDSVEIMLK 724
++ NP G S I +K
Sbjct: 58 TLKNPAGEKSATINVK 73
>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of
peroxidasin. Ig3_Peroxidasin: the third immunoglobulin
(Ig)-like domain in peroxidasin. Peroxidasin has a
peroxidase domain and interacting extracellular motifs
containing four Ig-like domains. It has been suggested
that peroxidasin is secreted and has functions related
to the stabilization of the extracellular matrix. It may
play a part in various other important processes such as
removal and destruction of cells which have undergone
programmed cell death, and protection of the organism
against non-self.
Length = 74
Score = 31.1 bits (70), Expect = 0.39
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 405 GAGVNLLCDVDGNPAPEITW------IHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKA-S 457
G V+ LC+ G P P I W + D +V +S L + + G+Y C+A +
Sbjct: 2 GQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVN 61
Query: 458 VMGFPEVGAEATV 470
++G A+ TV
Sbjct: 62 IVGSQRTVAQLTV 74
Score = 31.1 bits (70), Expect = 0.39
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 559 GAGVNLLCDVDGNPAPEITW------IHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKA-S 611
G V+ LC+ G P P I W + D +V +S L + + G+Y C+A +
Sbjct: 2 GQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVN 61
Query: 612 VMGFPEVGAEATV 624
++G A+ TV
Sbjct: 62 IVGSQRTVAQLTV 74
>gnl|CDD|143303 cd05895, Ig_Pro_neuregulin-1, Immunoglobulin (Ig)-like domain found
in neuregulin (NRG)-1. Ig_Pro_neuregulin-1:
immunoglobulin (Ig)-like domain found in neuregulin
(NRG)-1. There are many NRG-1 isoforms which arise from
the alternative splicing of mRNA. NRG-1 belongs to the
neuregulin gene family, which is comprised of four
genes. This group represents NRG-1. NRGs are signaling
molecules, which participate in cell-cell interactions
in the nervous system, breast, and heart, and other
organ systems, and are implicated in the pathology of
diseases including schizophrenia, multiple sclerosis,
and breast cancer. The NRG-1 protein binds to and
activates the tyrosine kinases receptors ErbB3 and
ErbB4, initiating signaling cascades. NRG-1 has multiple
functions; for example, in the brain it regulates
various processes such as radial glia formation and
neuronal migration, dendritic development, and
expression of neurotransmitters receptors; in the
peripheral nervous system NRG-1 regulates processes such
as target cell differentiation, and Schwann cell
survival.
Length = 76
Score = 31.1 bits (70), Expect = 0.43
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 648 VECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYN 707
+ C S P + W G+EIG + D + K+ S L I ++ G Y
Sbjct: 3 LRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIK--IRKKKKSSELQISKASLADNGEYK 60
Query: 708 CSVSNPYGSDSV 719
C VS+ G+DSV
Sbjct: 61 CMVSSKLGNDSV 72
>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of
peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin
(Ig)-like domain in peroxidasin. Peroxidasin has a
peroxidase domain and interacting extracellular motifs
containing four Ig-like domains. It has been suggested
that peroxidasin is secreted, and has functions related
to the stabilization of the extracellular matrix. It may
play a part in various other important processes such as
removal and destruction of cells, which have undergone
programmed cell death, and protection of the organism
against non-self.
Length = 69
Score = 30.6 bits (69), Expect = 0.47
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
Query: 647 RVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706
++ CSA P P +TW+ G + V S + + + L IR+ G Y
Sbjct: 2 QIPCSAQGDPEP-TITWNKDG--VQVTESGKFHISPE-------GYLAIRDVGVADQGRY 51
Query: 707 NCSVSNPYGSDSVEIML 723
C N G SV ++L
Sbjct: 52 ECVARNTIGYASVSMVL 68
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 34.1 bits (78), Expect = 0.51
Identities = 26/125 (20%), Positives = 33/125 (26%), Gaps = 14/125 (11%)
Query: 880 PKLAPSPHLPPSLSNSVIVTDKTPPPSHLTISS---------NSVDPRYSATYGNPYLRQ 930
P L P+ P + SV P PS ++S S PR
Sbjct: 2553 PPLPPAA-PPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGP 2611
Query: 931 SPNLPPPHTGQPPPPPYSSVRNGALPQATRLPSSPTSQFIVPNNTNHSTSIKRGTLATHV 990
+P P P P PP S P A P P + R +
Sbjct: 2612 APPSPLPPDTHAPDPPPPSPS----PAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRA 2667
Query: 991 PTKVR 995
R
Sbjct: 2668 RRLGR 2672
Score = 33.8 bits (77), Expect = 0.69
Identities = 23/86 (26%), Positives = 30/86 (34%), Gaps = 9/86 (10%)
Query: 880 PKLAPSPHLPPSLSNSVIVTDKTPPPSHLTIS-SNSVDPRYSATYGNPYLRQSPNLPPPH 938
P +P+ LPP S P P ++ SV P G R+ P+ P
Sbjct: 2820 PAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAP------GGDVRRRPPSRSPAA 2873
Query: 939 TGQPPPPPYSSVRNGALPQATRLPSS 964
P P VR A P +R S
Sbjct: 2874 K--PAAPARPPVRRLARPAVSRSTES 2897
Score = 33.0 bits (75), Expect = 1.3
Identities = 22/94 (23%), Positives = 32/94 (34%), Gaps = 11/94 (11%)
Query: 880 PKLAPSPHLP-PSLSNSVIVTDKTPPPSHLTISSNSVDPRYSATYGNPYLRQSPNLPPPH 938
P P L P++++ + P P +V +A P + LPPP
Sbjct: 2775 PAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAAL--PPAASPAGPLPPPT 2832
Query: 939 TGQPPPPPYSSVRNGALPQATRLPSSPTSQFIVP 972
+ QP PP P PS P + P
Sbjct: 2833 SAQPTAPP--------PPPGPPPPSLPLGGSVAP 2858
>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors and similar proteins. Ig1_Robo:
domain similar to the first immunoglobulin (Ig)-like
domain in Robo (roundabout) receptors. Robo receptors
play a role in the development of the central nervous
system (CNS), and are receptors of Slit protein. Slit is
a repellant secreted by the neural cells in the midline.
Slit acts through Robo to prevent most neurons from
crossing the midline from either side. Three mammalian
Robo homologs (robo1, -2, and -3), and three mammalian
Slit homologs (Slit-1,-2, -3), have been identified.
Commissural axons, which cross the midline, express low
levels of Robo; longitudinal axons, which avoid the
midline, express high levels of Robo. robo1, -2, and -3
are expressed by commissural neurons in the vertebrate
spinal cord and Slits 1, -2, -3 are expressed at the
ventral midline. Robo-3 is a divergent member of the
Robo family which instead of being a positive regulator
of slit responsiveness, antagonizes slit responsiveness
in precrossing axons. The Slit-Robo interaction is
mediated by the second leucine-rich repeat (LRR) domain
of Slit and the two N-terminal Ig domains of Robo, Ig1
and Ig2. The primary Robo binding site for Slit2 has
been shown by surface plasmon resonance experiments and
mutational analysis to be is the Ig1 domain, while the
Ig2 domain has been proposed to harbor a weak secondary
binding site.
Length = 100
Score = 31.4 bits (71), Expect = 0.54
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW 424
PR P + V +G L C +G P P I W
Sbjct: 2 PRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQW 35
Score = 31.4 bits (71), Expect = 0.54
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW 578
PR P + V +G L C +G P P I W
Sbjct: 2 PRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQW 35
>gnl|CDD|227785 COG5498, ACF2, Predicted glycosyl hydrolase [Cell envelope
biogenesis, outer membrane].
Length = 760
Score = 33.7 bits (77), Expect = 0.62
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 8/95 (8%)
Query: 848 FADAVFPSLKPDGHNNNGFVFSDFIRDYNQTLPKLAPSPHLPPSLSNSVIVTDKTPPPSH 907
FA V L P G + + S D N P + PPS SV P
Sbjct: 25 FALTVIILLFPTGASASPHSVSVPKGDSNVEFPPILSGTINPPSTFRSV-----QHPVPP 79
Query: 908 LTISSNSVDP-RYSATYGNPYL--RQSPNLPPPHT 939
+ S+S P + + YGN + R +P P P++
Sbjct: 80 PGVRSDSTGPIQTNKFYGNLLVGSRTNPQYPHPYS 114
>gnl|CDD|99993 cd03823, GT1_ExpE7_like, This family is most closely related to the
GT1 family of glycosyltransferases. ExpE7 in
Sinorhizobium meliloti has been shown to be involved in
the biosynthesis of galactoglucans (exopolysaccharide
II).
Length = 359
Score = 33.0 bits (76), Expect = 0.74
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 805 NVHLDYAGHDSETGSESVHTRIGVPLA--GPVPMDQRYHRYSSADFADAVFPSL 856
++ L G+ E ES + G P ++ Y+ D V PS+
Sbjct: 220 DIELVIVGNGLELEEESYELEGDPRVEFLGAYPQEEIDDFYAEIDV--LVVPSI 271
>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin.
Ig5_Contactin_like: Fifth Ig domain of contactins.
Contactins are neural cell adhesion molecules and are
comprised of six Ig domains followed by four fibronectin
type III(FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. The first four Ig domains
form the intermolecular binding fragment, which arranges
as a compact U-shaped module via contacts between Ig
domains 1 and 4, and between Ig domains 2 and 3.
Contactin-2 (TAG-1, axonin-1) may play a part in the
neuronal processes of neurite outgrowth, axon guidance
and fasciculation, and neuronal migration. This group
also includes contactin-1 and contactin-5. The different
contactins show different expression patterns in the
central nervous system. During development and in
adulthood, contactin-2 is transiently expressed in
subsets of central and peripheral neurons. Contactin-5
is expressed specifically in the rat postnatal nervous
system, peaking at about 3 weeks postnatal, and a lack
of contactin-5 (NB-2) results in an impairment of
neuronal act ivity in the rat auditory system.
Contactin-5 is highly expressed in the adult human brain
in the occipital lobe and in the amygdala. Contactin-1
is differentially expressed in tumor tissues and may,
through a RhoA mechanism, facilitate invasion and
metastasis of human lung adenocarcinoma.
Length = 73
Score = 30.1 bits (68), Expect = 0.75
Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 10/70 (14%)
Query: 148 DREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHH 207
++ +EC P I+W GT + ++ R+ DG +L + +
Sbjct: 1 GGDVIIEC-KPKAAPKPTISWSKGTELLTNSSRICIWP--DG-------SLEILNVTKSD 50
Query: 208 NTTFTCQAQN 217
+TC A+N
Sbjct: 51 EGKYTCFAEN 60
Score = 29.7 bits (67), Expect = 1.3
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 10/69 (14%)
Query: 648 VECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYN 707
+EC + P P ++WS +G E+ SS + D +L I G Y
Sbjct: 6 IECKPKAAPKP-TISWS-KGTELLTNSSR-ICIWPD-------GSLEILNVTKSDEGKYT 55
Query: 708 CSVSNPYGS 716
C N +G
Sbjct: 56 CFAENFFGK 64
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 33.5 bits (76), Expect = 0.80
Identities = 32/107 (29%), Positives = 35/107 (32%), Gaps = 26/107 (24%)
Query: 880 PKLAP----SPHLPPSLSNSVIVTDKTPPPSHLTISSNSVDPRYSATYGNPYLRQSPNLP 935
P L P H PPS PPP L S P S P L QS +LP
Sbjct: 385 PALKPLSSLPTHHPPS---------AHPPPLQLMPQSQ---PLQSVPAQPPVLTQSQSLP 432
Query: 936 PPHTGQP----------PPPPYSSVRNGALPQATRLPSSPTSQFIVP 972
P + P P +G LP PS PTS P
Sbjct: 433 PKASTHPHSGLHSGPPQSPFAQHPFTSGGLPAIGPPPSLPTSTPAAP 479
Score = 31.2 bits (70), Expect = 3.9
Identities = 26/103 (25%), Positives = 37/103 (35%), Gaps = 21/103 (20%)
Query: 880 PKLAPSPHLPPSLSNSVIVTDKTPPPSHLTISSNSVDPRYSATYGNP----------YLR 929
P+ PS +PP + + PPP T S+ +V P+ S P L
Sbjct: 175 PQGPPSIQVPPGAALA----PSAPPP---TPSAQAVPPQGSPIAAQPAPQPQQPSPLSLI 227
Query: 930 QSPNLPPPHTGQPPPPPYSSVRNGALPQA----TRLPSSPTSQ 968
+P+L P P PP + PQ +R P S
Sbjct: 228 SAPSLHPQRLPSPHPPLQPQTASQQSPQPPAPSSRHPQSSHHG 270
>gnl|CDD|143192 cd05715, Ig_P0-like, Immunoglobulin (Ig)-like domain of Protein
zero (P0) and similar proteins. Ig_P0ex-like: domain
similar to the immunoglobulin (Ig) domain of Protein
zero (P0). P0 accounts for over 50% of the total protein
in peripheral nervous system (PNS) myelin. P0 is a
single-pass transmembrane glycoprotein with a highly
basic intracellular domain and an extracellular Ig
domain. The extracellular domain of P0 (P0-ED) is
similar to the Ig variable domain, carrying one acceptor
sequence for N-linked glycosylation. P0 plays a role in
membrane adhesion in the spiral wraps of the myelin
sheath. The intracellular domain is thought to mediate
membrane apposition of the cytoplasmic faces and may,
through electrostatic interactions, interact directly
with lipid headgroups. It is thought that homophilic
interactions of the P0 extracellular domain mediate
membrane juxtaposition in the extracellular space of PNS
myelin. This group also contains the Ig domain of Sodium
channel subunit beta-2 (SCN2B), and of epithelial V-like
antigen 1 (EVA). EVA, also known as myelin protein
zero-like 2, is an adhesion molecule, which may play a
role in structural organization of the thymus and early
lymphocyte development. SCN2B subunits play a role in
determining sodium channel density and function in
neurons,and in control of electrical excitability in
the brain.
Length = 116
Score = 31.2 bits (71), Expect = 0.90
Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 27/101 (26%)
Query: 636 RTQFGIPGDTARVECSAFS---IPPPEKVTWSYRGEEIGVGSSDDYSVLE------DPLK 686
R + + G R++C+ S I VTWS++ E GS D S+ PLK
Sbjct: 6 REVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPE----GSGDTESIFHYHKGPYYPLK 61
Query: 687 EGI--------------KSTLIIRESRHDHFGVYNCSVSNP 713
+G ++++I + G Y C V NP
Sbjct: 62 DGRFKDRVEWVGNPSRKDASIVIHNLQFTDNGTYTCDVKNP 102
>gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of
protein tyrosine kinase (PTK) 7, also known as CCK4.
Ig2_PTK7: domain similar to the second immunoglobulin
(Ig)-like domain in protein tyrosine kinase (PTK) 7,
also known as CCK4. PTK7 is a subfamily of the receptor
protein tyrosine kinase family, and is referred to as an
RPTK-like molecule. RPTKs transduce extracellular
signals across the cell membrane, and play important
roles in regulating cell proliferation, migration, and
differentiation. PTK7 is organized as an extracellular
portion having seven Ig-like domains, a single
transmembrane region, and a cytoplasmic tyrosine
kinase-like domain. PTK7 is considered a pseudokinase as
it has several unusual residues in some of the highly
conserved tyrosine kinase (TK) motifs; it is predicted
to lack TK activity. PTK7 may function as a
cell-adhesion molecule. PTK7 mRNA is expressed at high
levels in placenta, melanocytes, liver, lung, pancreas,
and kidney. PTK7 is overexpressed in several cancers,
including melanoma and colon cancer lines.
Length = 77
Score = 30.3 bits (68), Expect = 0.91
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 8/57 (14%)
Query: 408 VNLLCDVDGNPAPEITWIHEDSD--------KVVGNSPNLTLLMTSDDLAGRYYCKA 456
V L C +DG+P P W + + V LTL D +G YYC A
Sbjct: 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCA 57
Score = 30.3 bits (68), Expect = 0.91
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 8/57 (14%)
Query: 562 VNLLCDVDGNPAPEITWIHEDSD--------KVVGNSPNLTLLMTSDDLAGRYYCKA 610
V L C +DG+P P W + + V LTL D +G YYC A
Sbjct: 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCA 57
>gnl|CDD|237080 PRK12370, PRK12370, invasion protein regulator; Provisional.
Length = 553
Score = 32.9 bits (75), Expect = 1.0
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 853 FPSLKPDGHNNNGFVFSDFIRDYNQTLPKLAPSPHLPP 890
P +N FVF DFI + + +L + ++PP
Sbjct: 1 MMHFNPVPVSNKKFVFDDFILNMDGSLLRSEKKVNIPP 38
>gnl|CDD|143254 cd05846, Ig1_MRC-OX-2_like, First immunoglobulin (Ig) domain of rat
MRC OX-2 antigen (also known as CD200) and similar
proteins. Ig1_ MRC-OX-2_like: domain similar to the
first immunoglobulin (Ig) domain of rat MRC OX-2 antigen
(also known as CD200). MRC OX-2 is a membrane
glycoprotein expressed in a variety of lymphoid and
non-lymphoid cells in rats. It has a similar broad
distribution pattern in humans. MRC OX-2 may regulate
myeloid cell activity. The protein has an extracellular
portion containing two Ig-like domains, a transmembrane
portion, and a cytoplasmic portion.
Length = 97
Score = 30.4 bits (69), Expect = 1.1
Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 14/83 (16%)
Query: 42 GSRVTLPCRVIDKTGVLQ--WTKDDFALGPH-----------RNLSGFDRYAMIGSDEEG 88
G VTL C + VLQ W K P + + R I S
Sbjct: 1 GGNVTLSCNLTLPEEVLQVTWQKIQ-GSSPENIATYSEKYGVKIQPSYFRRRSITSLGLN 59
Query: 89 DYSLEIYPVMLDDDARYQCQVST 111
S+ I+ V L+D+ Y+C +T
Sbjct: 60 STSITIWNVTLEDEGCYKCIFNT 82
>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421). This
family represents a conserved region approximately 350
residues long within a number of plant proteins of
unknown function.
Length = 357
Score = 32.6 bits (74), Expect = 1.1
Identities = 19/92 (20%), Positives = 23/92 (25%), Gaps = 12/92 (13%)
Query: 877 QTLPKLAPSPHLPPSLSNSVIVTDKTPPPSHLTISSNSVDPRYSATYGNPYLRQSPNLPP 936
Q P P P + PPP P + N PP
Sbjct: 117 QQEPYYPPPSQPQPPPAQQPQAQQPQPPPQVPQQQQYQSPP--------QQPQYQQNPPP 168
Query: 937 PHTGQPPP----PPYSSVRNGALPQATRLPSS 964
P P S + + P LPSS
Sbjct: 169 QAQSAPQVSGLYPEESPYQPQSYPPNEPLPSS 200
Score = 29.5 bits (66), Expect = 8.3
Identities = 19/93 (20%), Positives = 24/93 (25%), Gaps = 13/93 (13%)
Query: 876 NQTLPKLAPSPHLPPSLSNSVIVTDKTPPPSHLTISSNSVDPRYSATYGNPYLRQSPNLP 935
+Q P LPP SV + S P P + P
Sbjct: 90 SQAPPSHQYPSQLPPQQVQSVPQQPTPQQEPYYPPPSQPQPP--------PAQQPQAQQP 141
Query: 936 PPHTGQPPPPPYSSVRNGALPQATRLPSSPTSQ 968
P P Y S PQ + +P Q
Sbjct: 142 QPPPQVPQQQQYQSP-----PQQPQYQQNPPPQ 169
>gnl|CDD|143278 cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-like domain of
Neural Cell Adhesion Molecule NCAM-2 (also known as
OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth
immunoglobulin (Ig)-like domain of Neural Cell Adhesion
Molecule NCAM-2 (also known as OCAM/mamFas II and
RNCAM). NCAM-2 is organized similarly to NCAM ,
including five N-terminal Ig-like domains and two
fibronectin type III domains. NCAM-2 is differentially
expressed in the developing and mature olfactory
epithelium (OE), and may function like NCAM, as an
adhesion molecule.
Length = 98
Score = 30.3 bits (68), Expect = 1.2
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 405 GAGVNLLCDVDGNPAPEITW 424
L C +G P PEITW
Sbjct: 16 NGAATLSCKAEGEPIPEITW 35
Score = 30.3 bits (68), Expect = 1.2
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 559 GAGVNLLCDVDGNPAPEITW 578
L C +G P PEITW
Sbjct: 16 NGAATLSCKAEGEPIPEITW 35
>gnl|CDD|143329 cd07705, Ig2_Necl-1, Second immunoglobulin (Ig)-like domain of
nectin-like molcule-1 (Necl-1, also known as cell
adhesion molecule3 (CADM3)). Ig2_Necl-1: second
immunoglobulin (Ig)-like domain of nectin-like molcule-1
(Necl-1, also known as cell adhesion molecule3 (CADM3)).
These nectin-like molecules have similar domain
structures to those of nectins. At least five
nectin-like molecules have been identified (Necl-1 -
Necl-5). These have an extracellular region containing
three Ig-like domains, one transmembrane region, and one
cytoplasmic region. The N-terminal Ig-like domain of the
extracellular region belongs to the V-type subfamily of
Ig domains, is essential to cell-cell adhesion, and
plays a part in the interaction with the envelope
glycoprotein D of various viruses. Necl-1 and Necl-2
have Ca(2+)-independent homophilic and heterophilic
cell-cell adhesion activity. Necl-1 is specifically
expressed in neural tissue and is important to the
formation of synapses, axon bundles, and myelinated
axons. Necl-2 is expressed in a wide variety of tissues,
and is a putative tumour suppressor gene, which is
downregulated in aggressive neuroblastoma. Ig domains
are likely to participate in ligand binding and
recognition.
Length = 83
Score = 30.0 bits (67), Expect = 1.2
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 153 LECISANGKPPAEITWIDGTGTVM-SNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTF 211
L C S+ KP A I W G + + V E+ +G+ TV S++ +E
Sbjct: 4 LRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDG--NGKTFTVSSSVEFQVTREDDGAEI 61
Query: 212 TC 213
TC
Sbjct: 62 TC 63
>gnl|CDD|143174 cd04973, Ig1_FGFR, First immunoglobulin (Ig)-like domain of
fibroblast growth factor receptor (FGFR). Ig1_FGFR:
The first immunoglobulin (Ig)-like domain of fibroblast
growth factor receptor (FGFR). Fibroblast growth
factors (FGFs) participate in morphogenesis,
development, angiogenesis, and wound healing. These
FGF-stimulated processes are mediated by four FGFR
tyrosine kinases (FGRF1-4). FGFRs are comprised of an
extracellular portion consisting of three Ig-like
domains, a transmembrane helix, and a cytoplasmic
portion having protein tyrosine kinase activity. The
highly conserved Ig-like domains 2 and 3, and the
linker region between D2 and D3 define a general
binding site for all FGFs.
Length = 79
Score = 29.9 bits (67), Expect = 1.4
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGP 69
+ +A G + L CR+ D + WTKD LG
Sbjct: 1 VESYSAHPGDLLQLRCRLRDDVQSINWTKDGVQLGE 36
>gnl|CDD|143276 cd05868, Ig4_NrCAM, Fourth immunoglobulin (Ig)-like domain of NrCAM
(NgCAM-related cell adhesion molecule). Ig4_ NrCAM:
fourth immunoglobulin (Ig)-like domain of NrCAM
(NgCAM-related cell adhesion molecule). NrCAM belongs to
the L1 subfamily of cell adhesion molecules (CAMs) and
is comprised of an extracellular region having six
IG-like domains and five fibronectin type III domains, a
transmembrane region and an intracellular domain. NrCAM
is primarily expressed in the nervous system.
Length = 76
Score = 29.6 bits (66), Expect = 1.5
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
G+ + C A P P ++W G I + DP ++ T+I + +
Sbjct: 1 GEDGTLICRANGNPKP-SISWLTNGVPIEIAP-------TDPSRKVDGDTIIFSKVQERS 52
Query: 703 FGVYNCSVSNPYG 715
VY C+ SN YG
Sbjct: 53 SAVYQCNASNEYG 65
>gnl|CDD|143274 cd05866, Ig1_NCAM-2, First immunoglobulin (Ig)-like domain of
neural cell adhesion molecule NCAM-2. Ig1_NCAM-2:
first immunoglobulin (Ig)-like domain of neural cell
adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2
is organized similarly to NCAM , including five
N-terminal Ig-like domains and two fibronectin type III
domains. NCAM-2 is differentially expressed in the
developing and mature olfactory epithelium (OE), and may
function like NCAM, as an adhesion molecule.
Length = 92
Score = 30.0 bits (67), Expect = 1.6
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 9/74 (12%)
Query: 643 GDTARVECSAFSIPPPEKVTW-SYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHD 701
G++ C+A I PE + W + +GE+I S V++ KEG++S L I + +
Sbjct: 15 GESKFFTCTA--IGEPESIDWYNPQGEKI---VSSQRVVVQ---KEGVRSRLTIYNANIE 66
Query: 702 HFGVYNCSVSNPYG 715
G+Y C ++ G
Sbjct: 67 DAGIYRCQATDAKG 80
>gnl|CDD|143178 cd04977, Ig1_NCAM-1_like, First immunoglobulin (Ig)-like domain of
neural cell adhesion molecule NCAM-1 and similar
proteins. Ig1_NCAM-1 like: first immunoglobulin
(Ig)-like domain of neural cell adhesion molecule
NCAM-1. NCAM-1 plays important roles in the development
and regeneration of the central nervous system, in
synaptogenesis and neural migration. NCAM mediates
cell-cell and cell-substratum recognition and adhesion
via homophilic (NCAM-NCAM), and heterophilic
(NCAM-nonNCAM), interactions. NCAM is expressed as three
major isoforms having different intracellular
extensions. The extracellular portion of NCAM has five
N-terminal Ig-like domains and two fibronectin type III
domains. The double zipper adhesion complex model for
NCAM homophilic binding involves the Ig1, Ig2, and Ig3
domains. By this model, Ig1 and Ig2 mediate dimerization
of NCAM molecules situated on the same cell surface (cis
interactions), and Ig3 domains mediate interactions
between NCAM molecules expressed on the surface of
opposing cells (trans interactions), through binding to
the Ig1 and Ig2 domains. The adhesive ability of NCAM is
modulated by the addition of polysialic acid chains to
the fifth Ig-like domain. Also included in this group is
NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2
is differentially expressed in the developing and mature
olfactory epithelium (OE).
Length = 92
Score = 29.8 bits (67), Expect = 1.8
Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 658 PEKVTW-SYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGS 716
P+ ++W S GE++ + SV++ + ++STL I + + G+Y C ++ G+
Sbjct: 28 PKDISWFSPNGEKLV--TQQQISVVQ---NDDVRSTLTIYNANIEDAGIYKCVATDAKGT 82
Query: 717 DS 718
+S
Sbjct: 83 ES 84
>gnl|CDD|225268 COG2404, COG2404, Predicted phosphohydrolase (DHH superfamily)
[General function prediction only].
Length = 339
Score = 31.7 bits (72), Expect = 1.8
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 768 IEHHVTADGEKNQCKESDNSSNISDIKL 795
I+HH TA+ K + +E+ S + D +
Sbjct: 88 IDHHKTANETKEEVREAGVSVYVDDSRC 115
>gnl|CDD|143210 cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig)-like domain of
the L1 cell adhesion molecule (CAM) and similar
proteins. Ig6_L1-CAM_like: domain similar to the sixth
immunoglobulin (Ig)-like domain of the L1 cell adhesion
molecule (CAM). L1 belongs to the L1 subfamily of cell
adhesion molecules (CAMs) and is comprised of an
extracellular region having six Ig-like domains and five
fibronectin type III domains, a transmembrane region and
an intracellular domain. L1 is primarily expressed in
the nervous system and is involved in its development
and function. L1 is associated with an X-linked
recessive disorder, X-linked hydrocephalus, MASA
syndrome, or spastic paraplegia type 1, that involves
abnormalities of axonal growth. This group also contains
NrCAM [Ng(neuronglia)CAM-related cell adhesion
molecule], which is primarily expressed in the nervous
system, and human neurofascin.
Length = 77
Score = 29.3 bits (66), Expect = 1.9
Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 12/81 (14%)
Query: 648 VECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIR----ESRHDHF 703
++C A PPP +W+ G ++ D TL+I D+
Sbjct: 3 IKCEAKGNPPP-TFSWTRNGTHFDPEKDPRVTMKPD------SGTLVIDNMNGGRAEDYE 55
Query: 704 GVYNCSVSNPYGSD-SVEIML 723
G Y C SN G+ S EI L
Sbjct: 56 GEYQCYASNELGTAISNEIHL 76
>gnl|CDD|143269 cd05861, Ig1_PDGFR-alphabeta, Frst immunoglobulin (Ig)-like domain
of platelet-derived growth factor (PDGF) receptors (R),
alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta:
The first immunoglobulin (Ig)-like domain of
platelet-derived growth factor (PDGF) receptors (R),
alpha (CD140a), and beta (CD140b). PDGF is a potent
mitogen for connective tissue cells. PDGF-stimulated
processes are mediated by three different PDGFs
(PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs,
whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha
and beta have similar organization: an extracellular
component with five Ig-like domains, a transmembrane
segment, and a cytoplasmic portion having protein
tyrosine kinase activity. In mice, PDGFRalpha and
PDGFRbeta are essential for normal development.
Length = 84
Score = 29.4 bits (66), Expect = 1.9
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 643 GDTARVECSAFSIPPPEKV--TWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRH 700
G+T V C E V +W+Y G++IG G + V ++STL +
Sbjct: 1 GETITVNCIVQGN---EVVDFSWTYPGKDIGKGIPEVEEVKVPATT--LRSTLTFPHATV 55
Query: 701 DHFGVYNCSV 710
+ G Y C+
Sbjct: 56 EDSGTYECAA 65
>gnl|CDD|143217 cd05740, Ig_CEACAM_D4, Fourth immunoglobulin (Ig)-like domain of
carcinoembryonic antigen (CEA) related cell adhesion
molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin
(Ig)-like domain 4 in carcinoembryonic antigen (CEA)
related cell adhesion molecule (CEACAM) protein
subfamily. The CEA family is a group of anchored or
secreted glycoproteins, expressed by epithelial cells,
leukocytes, endothelial cells and placenta. The CEA
family is divided into the CEACAM and pregnancy-specific
glycoprotein (PSG) subfamilies. This group represents
the CEACAM subfamily. CEACAM1 has many important
cellular functions, it is a cell adhesion molecule, and
a signaling molecule that regulates the growth of tumor
cells, it is an angiogenic factor, and is a receptor for
bacterial and viral pathogens, including mouse hepatitis
virus (MHV). In mice, four isoforms of CEACAM1 generated
by alternative splicing have either two [D1, D4] or four
[D1-D4] Ig-like domains on the cell surface. This family
corresponds to the D4 Ig-like domain.
Length = 91
Score = 29.6 bits (66), Expect = 2.0
Identities = 23/98 (23%), Positives = 32/98 (32%), Gaps = 21/98 (21%)
Query: 33 EPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHR-NLSGFDRYAMIGSDEEGDYS 91
P+D V TL C + + W + L P R LS +R +
Sbjct: 14 PPEDNQPV-----TLTCEAEGQATYIWWVNNGSLLVPPRLQLSNDNR------------T 56
Query: 92 LEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVL 129
L V D YQC+ S + + S L V
Sbjct: 57 LTFNNVTRSDTGHYQCEASNEV---SNMTSDPYILNVN 91
>gnl|CDD|143262 cd05854, Ig6_Contactin-2, Sixth Ig domain of contactin-2.
Ig6_Contactin-2: Sixth Ig domain of the neural cell
adhesion molecule contactin-2-like. Contactins are
comprised of six Ig domains followed by four fibronectin
type III (FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. Contactin-2 (TAG-1,
axonin-1) facilitates cell adhesion by homophilic
binding between molecules in apposed membranes. It may
play a part in the neuronal processes of neurite
outgrowth, axon guidance and fasciculation, and neuronal
migration. The first four Ig domains form the
intermolecular binding fragment, which arranges as a
compact U-shaped module by contacts between IG domains 1
and 4, and domains 2 and 3. The different contactins
show different expression patterns in the central
nervous system. During development and in adulthood,
contactin-2 is transiently expressed in subsets of
central and peripheral neurons. Contactin-2 is also
expressed in retinal amacrine cells in the developing
chick retina, corresponding to the period of formation
and maturation of AC proce sses.
Length = 85
Score = 29.2 bits (65), Expect = 2.1
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 190 RRTTVKST---LVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAP 236
RR VK T LV+ + H T+TC AQ D A L+V+ P
Sbjct: 38 RRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASA--TLVVRGPP 85
>gnl|CDD|165173 PHA02826, PHA02826, IL-1 receptor-like protein; Provisional.
Length = 227
Score = 31.0 bits (70), Expect = 2.2
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 53 DKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYS--LEIYPVMLDDDARYQ 106
DKT + + W+K D +L R+ + I +E GD S L I V+ D+ Y
Sbjct: 56 DKTFITSYNVTWSKTD-SLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDEGIYI 114
Query: 107 CQVSTG-ILGEPAIRSRF 123
C +S+G I E IR F
Sbjct: 115 CTISSGNICEESTIRLTF 132
>gnl|CDD|143173 cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobulin-like) of Trk
receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth
domain of Trk receptors TrkA, TrkB and TrkC, this is an
immunoglobulin (Ig)-like domain which binds to
neurotrophin. The Trk family of receptors are tyrosine
kinase receptors. They are activated by dimerization,
leading to autophosphorylation of intracellular tyrosine
residues, and triggering the signal transduction
pathway. TrkA, TrkB, and TrkC share significant sequence
homology and domain organization. The first three
domains are leucine-rich domains. The fourth and fifth
domains are Ig-like domains playing a part in ligand
binding. TrkA, Band C mediate the trophic effects of the
neurotrophin Nerve growth factor (NGF) family. TrkA is
recognized by NGF. TrKB is recognized by brain-derived
neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC
is recognized by NT-3. NT-3 is promiscuous as in some
cell systems it activates TrkA and TrkB receptors. TrkA
is a receptor found in all major NGF targets, including
the sympathetic, trigeminal, and dorsal root ganglia,
cholinergic neurons of the basal forebrain and the
striatum. TrKB transcripts are found throughout multiple
structures of the central and peripheral nervous
systems. The TrkC gene is expressed throughout the
mammalian nervous system.
Length = 90
Score = 29.4 bits (66), Expect = 2.5
Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 7/83 (8%)
Query: 642 PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHD 701
G TA + C+A P P KV W G + +D D L + +
Sbjct: 14 EGGTATIRCTAEGSPLP-KVEWIIAGLIVIQTRTDTLETTVDIY------NLQLSNITSE 66
Query: 702 HFGVYNCSVSNPYGSDSVEIMLK 724
C+ NP G +V + +
Sbjct: 67 TQTTVTCTAENPVGQANVSVQVT 89
>gnl|CDD|165149 PHA02785, PHA02785, IL-beta-binding protein; Provisional.
Length = 326
Score = 31.1 bits (70), Expect = 2.6
Identities = 33/138 (23%), Positives = 53/138 (38%), Gaps = 19/138 (13%)
Query: 92 LEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREI 151
+ I V +D Y C + + +R L V PP + + + T+ +
Sbjct: 179 ITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNL 238
Query: 152 ELECISANGKPP---AEITWI-----------DGTGTVMSNVRVTEEASVDGRRTTVKST 197
+ C + +PP A++ WI DG G + V + +R + S
Sbjct: 239 TIAC-RVSLRPPTTDADVFWISNGMYYEEDDEDGDG----RISVANKIYTTDKRRVITSR 293
Query: 198 LVLTPKKEHHNTTFTCQA 215
L + P KE TTFTC A
Sbjct: 294 LNINPVKEEDATTFTCMA 311
>gnl|CDD|214460 MTH00212, ND6, NADH dehydrogenase subunit 6; Provisional.
Length = 160
Score = 30.4 bits (69), Expect = 2.7
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 6/36 (16%)
Query: 727 KSFPLLLILTGVIGCVVILVALTMVVILCQRKVKKP 762
+ P+LL L +++L+AL MVV +CQ K P
Sbjct: 126 NNIPILLFLG-----LILLIALLMVVKICQY-YKGP 155
>gnl|CDD|221404 pfam12067, Sox_C_TAD, Sox C-terminal transactivation domain. This
domain is found at the C-terminus of the Sox family of
transcription factors. It is found associated with
pfam00505. It binds to the Armadillo repeats (pfam00514)
in Catenin beta-1 (CTNNB1), which is involved in
transcriptional regulation. It functions as a
transactivating domain (TAD).
Length = 197
Score = 30.8 bits (70), Expect = 2.7
Identities = 21/78 (26%), Positives = 27/78 (34%), Gaps = 3/78 (3%)
Query: 883 APSPHLPPSLSNSVIVTDKTPPPSHLTISSNSVDPRYSATYGNPYLRQSPNLPPPHTGQP 942
AP P+L + VT + P S YG Y+ + P GQ
Sbjct: 60 APQNAHAPALLRQMAVT-ENIPQGSPAPSIMGCPTPPQMYYGQMYVPECAKHHPVQLGQL 118
Query: 943 PPPPYSSVRNGA--LPQA 958
PPP S + L QA
Sbjct: 119 SPPPESQHLDTLDQLQQA 136
>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729). This
family of proteins is found in viruses. Proteins in this
family are typically between 145 and 1707 amino acids in
length. The family is found in association with
pfam01443, pfam01661, pfam05417, pfam01660, pfam00978.
There is a single completely conserved residue L that
may be functionally important.
Length = 115
Score = 29.6 bits (67), Expect = 2.8
Identities = 19/66 (28%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Query: 903 PPPSHLTISSNSVDPRYSATYGNPYLRQSPNLPPPHTG-QPPPPPYSSVRNGALPQATRL 961
P +H DPR P + LPPP PPP P V A P +
Sbjct: 32 PESAHPDDPPPVGDPRPPVVDTPPPVSAVWVLPPPSEPAAPPPDPEPPVPGPAGPPSPLA 91
Query: 962 PSSPTS 967
P +P
Sbjct: 92 PPAPAR 97
>gnl|CDD|130908 TIGR01849, PHB_depoly_PhaZ, polyhydroxyalkanoate depolymerase,
intracellular. This model represents an intracellular
depolymerase for polyhydroxyalkanoate (PHA), a carbon
and energy storing polyester that accumulates in
granules in many bacterial species when carbon sources
are abundant but other nutrients are limiting. This
family is named for PHAs generally, rather than
polyhydroxybutyrate (PHB) specificially as in Ralstonia
eutropha H16, to avoid overcalling chemical specificity
in other species. Note that this family lacks the
classic GXSXG lipase motif and instead shows weak
similarity to some [Fatty acid and phospholipid
metabolism, Degradation].
Length = 406
Score = 31.3 bits (71), Expect = 2.8
Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 19/94 (20%)
Query: 866 FVFSDFIRDYNQTLPKLAPSPHL-------PPSLSNSVIVTDKTPP--PSHLTISSNSVD 916
F D+I + + L P H+ P L+ ++ + PP P +T+ +D
Sbjct: 150 FDLEDYIDYLIEFIRFLGPDIHVIAVCQPAVPVLAAVALMAENEPPAQPRSMTLMGGPID 209
Query: 917 PRYSATYGNPYLRQSP----------NLPPPHTG 940
R S T N R+ P +P P+ G
Sbjct: 210 ARASPTVVNELAREKPIEWFQHNVIMRVPFPYPG 243
>gnl|CDD|197307 cd09073, ExoIII_AP-endo, Escherichia coli exonuclease III
(ExoIII)-like apurinic/apyrimidinic (AP) endonucleases.
The ExoIII family AP endonucleases belong to the large
EEP (exonuclease/endonuclease/phosphatase) superfamily
that contains functionally diverse enzymes that share a
common catalytic mechanism of cleaving phosphodiester
bonds. AP endonucleases participate in the DNA base
excision repair (BER) pathway. AP sites are one of the
most common lesions in cellular DNA. During BER, the
damaged DNA is first recognized by DNA glycosylase. AP
endonucleases then catalyze the hydrolytic cleavage of
the phosphodiester bond 5' to the AP site, which is then
followed by the coordinated actions of DNA polymerase,
deoxyribose phosphatase, and DNA ligase. If left
unrepaired, AP sites block DNA replication, which have
both mutagenic and cytotoxic effects. AP endonucleases
can carry out a wide range of excision and incision
reactions on DNA, including 3'-5' exonuclease,
3'-deoxyribose phosphodiesterase, 3'-phosphatase, and
occasionally, nonspecific DNase activities. Different AP
endonuclease enzymes catalyze the different reactions
with different efficiences. Many organisms have two
functional AP endonucleases, for example, APE1/Ref-1 and
Ape2 in humans, Apn1 and Apn2 in bakers yeast, Nape and
NExo in Neisseria meningitides, and exonuclease III
(ExoIII) and endonuclease IV (EndoIV) in Escherichia
coli. Usually, one of the two is the dominant AP
endonuclease, the other has weak AP endonuclease
activity, but exhibits strong 3'-5' exonuclease,
3'-deoxyribose phosphodiesterase, and 3'-phosphatase
activities. Class II AP endonucleases have been
classified into two families, designated ExoIII and
EndoIV, based on their homology to the Escherichia coli
enzymes. This family contains the ExoIII family; the
EndoIV family belongs to a different superfamily.
Length = 251
Score = 30.7 bits (70), Expect = 3.1
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 663 WSYRGE--EIGVGSSDDYSVLEDPLKEGIKSTLIIRESR-HDH 702
WSYRG E VG DY ++ + L E +K + I+ + + DH
Sbjct: 202 WSYRGNARERNVGWRIDYFLVSEELAEKVKDSGILSKVKGSDH 244
>gnl|CDD|215382 PLN02712, PLN02712, arogenate dehydrogenase.
Length = 667
Score = 31.1 bits (70), Expect = 3.2
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 902 TPPPSHLTISS-NSVDPRYSATYGNPYLRQSPNLPPPHTGQPPPPP 946
PPPS S ++ PR S + + + P P++
Sbjct: 7 QPPPSLFPTSKPTTMSPRLSLSIKSQSATATDKQPLPNSNPDNTTQ 52
>gnl|CDD|144451 pfam00859, CTF_NFI, CTF/NF-I family transcription modulation
region.
Length = 295
Score = 30.8 bits (69), Expect = 3.7
Identities = 31/142 (21%), Positives = 50/142 (35%), Gaps = 24/142 (16%)
Query: 875 YNQTLPKLA--PSPHLPPSLSNSVIVTDKTPPPSHLTISSNSVDPRYSATY-GNPYLRQS 931
+ P+L+ H P +S I P PS L ++ + P+ ++Y + +R
Sbjct: 122 PQDSSPRLSAFTQHHRPVITGHSGISASPHPTPSPLHFPTSPILPQQPSSYFPHTAIRYP 181
Query: 932 PNLPP------------PHTGQPPPPPYSS----VRNGALPQATRLPSSPTS-----QFI 970
P+L P + Q P S V N LP P P
Sbjct: 182 PHLHPQDPLKEFVQLVCDPSSQQAGQPNGSGQGKVPNHFLPTPMLAPPPPPPMARPVPLP 241
Query: 971 VPNNTNHSTSIKRGTLATHVPT 992
+P+ +TS + G + PT
Sbjct: 242 MPDTKPPTTSTEGGATSPTSPT 263
>gnl|CDD|220749 pfam10428, SOG2, RAM signalling pathway protein. SOG2 proteins in
Saccharomyces cerevisiae are involved in cell separation
and cytokinesis.
Length = 419
Score = 30.9 bits (70), Expect = 4.1
Identities = 20/107 (18%), Positives = 40/107 (37%), Gaps = 7/107 (6%)
Query: 880 PKLAPSPHLPPSLSNSVIVTDKTPPPSHLTISSNSVDPRYSATYGNPYLRQSPNLPPPHT 939
+A + + L + + PS S ++ + L+ + ++PPP++
Sbjct: 166 SMIARNTPISDRLRPRSVTPTRGRRPSSSPRSLSNP----TTLESPSNLQVTTDVPPPYS 221
Query: 940 -GQPPPPPYSSVRNGALPQATRLPSSPTSQFIVPNNTNHSTSIKRGT 985
G SS N ++ + P S S T+ S+SI +
Sbjct: 222 NGTSRSSTMSSSANLSIISSLATPRSGESFR--STPTSGSSSINPVS 266
>gnl|CDD|218881 pfam06070, Herpes_UL32, Herpesvirus large structural phosphoprotein
UL32. The large phosphorylated protein (UL32-like) of
herpes viruses is the polypeptide most frequently
reactive in immuno-blotting analyses with antisera when
compared with other viral proteins.
Length = 777
Score = 31.0 bits (70), Expect = 4.1
Identities = 16/97 (16%), Positives = 28/97 (28%), Gaps = 4/97 (4%)
Query: 872 IRDYNQTLPKLAPSPHLPPSLSNSVIVTDKTPPPSHLTISSNSVDPRYSATYGNPYLRQS 931
I + P A SP PSL VI P + D ++
Sbjct: 550 IVALSLASPSTAGSPRPKPSLGKFVI----GTDPFAFANTVRLTDNMRGGNGVGSSVKPK 605
Query: 932 PNLPPPHTGQPPPPPYSSVRNGALPQATRLPSSPTSQ 968
+ P + NG P ++ + ++ +
Sbjct: 606 GSASSKPLTGPGSDLKPATLNGKTPSSSLVGAARNAG 642
>gnl|CDD|151322 pfam10873, DUF2668, Protein of unknown function (DUF2668). Members
in this family of proteins are annotated as Cysteine and
tyrosine-rich protein 1, however currently no function
is known.
Length = 154
Score = 29.8 bits (67), Expect = 4.4
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 10/46 (21%)
Query: 909 TISSNSVDPRYSATYGNPYLRQSPNLPPPHTGQP-------PPPPY 947
IS P Y+ + Y +LPPP++ P PPPPY
Sbjct: 106 AISYPMAPPPYTYDHEMEY---PTDLPPPYSPAPQASAQRSPPPPY 148
>gnl|CDD|143279 cd05871, Ig_Semaphorin_classIII, Immunoglobulin (Ig)-like domain of
class III semaphorin. Ig_Semaphorin_class III;
Immunoglobulin (Ig)-like domain of class III
semaphorins. Semaphorins are classified into various
classes on the basis of structural features additional
to the Sema domain. Class III semaphorins are a
vertebrate class having a Sema domain, an Ig domain, a
short basic domain, and are secreted. They have been
shown to be axonal guidance cues and have a part in the
regulation of the cardiovascular, immune and respiratory
systems. Sema3A, the prototype member of this class III
subfamily, induces growth cone collapse and is an
inhibitor of axonal sprouting. In perinatal rat cortex
as a chemoattractant, it functions to direct, for
pyramidal neurons, the orientated extension of apical
dendrites. It may play a role, prior to the development
of apical dendrites, in signaling the radial migration
of newborn cortical neurons towards the upper layers.
Sema3A selectively inhibits vascular endothelial growth
factor receptor (VEGF)-induced angiogenesis and induces
microvascular permeability. This group also includes
Sema3B, -C, -D, -E, -G.
Length = 91
Score = 28.5 bits (64), Expect = 4.5
Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 24/85 (28%)
Query: 633 ISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKST 692
+ +G+ ++ +EC S P V W ++ D KE +K+
Sbjct: 1 AEEKVVYGVENNSTFLECLPKS--PQASVKWLFQRG-------------GDQRKEEVKTE 45
Query: 693 ---------LIIRESRHDHFGVYNC 708
L++R + GVY C
Sbjct: 46 ERLIHTERGLLLRSLQRSDAGVYTC 70
>gnl|CDD|222449 pfam13908, Shisa, Wnt and FGF inhibitory regulator. Shisa is a
transcription factor-type molecule that physically
interacts with immature forms of the Wnt receptor
Frizzled and the FGF receptor within the endoplasmic
reticulum to inhibit their post-translational maturation
and trafficking to the cell surface.
Length = 177
Score = 29.8 bits (67), Expect = 4.7
Identities = 20/80 (25%), Positives = 23/80 (28%), Gaps = 19/80 (23%)
Query: 879 LPKLAPSPHLPPSLSNSV-IVTDKTPPPSHLTISSNSVDPRY-SATY----------GNP 926
L K P ++ + TP P S P Y Y G P
Sbjct: 103 LEKACRPQ--RPVMTRATSTTVQTTPLPQPP-----STAPSYPGPQYQGYHPMPPQPGMP 155
Query: 927 YLRQSPNLPPPHTGQPPPPP 946
S PPP QP PP
Sbjct: 156 APPYSLQYPPPGLLQPQGPP 175
>gnl|CDD|143277 cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-like domain of
Neural Cell Adhesion Molecule NCAM-1 (NCAM).
Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of
Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays
important roles in the development and regeneration of
the central nervous system, in synaptogenesis and neural
migration. NCAM mediates cell-cell and cell-substratum
recognition and adhesion via homophilic (NCAM-NCAM) and
heterophilic (NCAM-non-NCAM) interactions. NCAM is
expressed as three major isoforms having different
intracellular extensions. The extracellular portion of
NCAM has five N-terminal Ig-like domains and two
fibronectin type III domains. The double zipper adhesion
complex model for NCAM homophilic binding involves Ig1,
Ig2, and Ig3. By this model, Ig1 and Ig2 mediate
dimerization of NCAM molecules situated on the same cell
surface (cis interactions), and Ig3 domains mediate
interactions between NCAM molecules expressed on the
surface of opposing cells (trans interactions), through
binding to the Ig1 and Ig2 domains. The adhesive ability
of NCAM is modulated by the addition of polysialic acid
chains to the fifth Ig-like domain.
Length = 97
Score = 28.8 bits (64), Expect = 4.9
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 14/64 (21%)
Query: 408 VNLLCDVDGNPAPEITW------IHEDSDKVVGN--------SPNLTLLMTSDDLAGRYY 453
+ L C+ G+P P ITW I + + G+ +LTL AG Y
Sbjct: 20 ITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYL 79
Query: 454 CKAS 457
C AS
Sbjct: 80 CTAS 83
Score = 28.8 bits (64), Expect = 4.9
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 14/64 (21%)
Query: 562 VNLLCDVDGNPAPEITW------IHEDSDKVVGN--------SPNLTLLMTSDDLAGRYY 607
+ L C+ G+P P ITW I + + G+ +LTL AG Y
Sbjct: 20 ITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYL 79
Query: 608 CKAS 611
C AS
Sbjct: 80 CTAS 83
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106). This
family of proteins are found in large numbers in the
Trichomonas vaginalis proteome. The function of this
protein is unknown.
Length = 422
Score = 30.4 bits (68), Expect = 5.0
Identities = 21/89 (23%), Positives = 27/89 (30%), Gaps = 11/89 (12%)
Query: 880 PKLAPSPHLPPSLSNSVIVTDKTPPPSHLTISSNSVDPRYSATYGNPYLRQSPNLPPPHT 939
P+ AP+P LP KT SH ++ P T NP + + P
Sbjct: 177 PREAPAPGLP-----------KTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQP 225
Query: 940 GQPPPPPYSSVRNGALPQATRLPSSPTSQ 968
Q P PQ T Q
Sbjct: 226 QQQPQQQPVQPAQQPTPQNPAQQPPQTEQ 254
>gnl|CDD|177614 PHA03377, PHA03377, EBNA-3C; Provisional.
Length = 1000
Score = 30.8 bits (69), Expect = 5.0
Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 2/89 (2%)
Query: 873 RDYNQTLPKLAPSPHLPPSLSNSVIVTDKTPPPSHLTISSNSVDPRYSATYGNPYLRQSP 932
R T PK++PS PP S V+ T P T S+ D +T P +
Sbjct: 546 RQKRATPPKVSPSDRGPPKASPPVMAPPSTGPRVMATPSTGPRDMAPPST--GPRQQAKC 603
Query: 933 NLPPPHTGQPPPPPYSSVRNGALPQATRL 961
PP +G P SS P R+
Sbjct: 604 KDGPPASGPHEKQPPSSAPRDMAPSVVRM 632
>gnl|CDD|221745 pfam12737, Mating_C, C-terminal domain of homeodomain 1. Mating in
fungi is controlled by the loci that determine the
mating type of an individual, and only individuals with
differing mating types can mate. Basidiomycete fungi
have evolved a unique mating system, termed tetrapolar
or bifactorial incompatibility, in which mating type is
determined by two unlinked loci; compatibility at both
loci is required for mating to occur. The multi-allelic
tetrapolar mating system is considered to be a novel
innovation that could have only evolved once, and is
thus unique to the mushroom fungi. This domain is
C-terminal to the homeodomain transcription factor
region.
Length = 418
Score = 30.2 bits (68), Expect = 5.9
Identities = 23/116 (19%), Positives = 34/116 (29%), Gaps = 17/116 (14%)
Query: 884 PSPHLPPSLSNSVIVTDKTPPPSHLTISSNSVDPRYSATYGNPYLRQSPNLPPPHTGQPP 943
PSP P+LS L+ S + +D R+ + P +
Sbjct: 72 PSPERSPALS----------SERLLSPSPSVLDLSPVLASPQTGKRRRSSSPSDDEDEAE 121
Query: 944 PP-------PYSSVRNGALPQATRLPSSPTSQFIVPNNTNHSTSIKRGTLATHVPT 992
P SS + A P LPS S + + + H PT
Sbjct: 122 RPSKRPRSDSISSSSSPAKPPEACLPSPAASTQDELSEASAAPLPTPSLSPPHTPT 177
>gnl|CDD|143243 cd05766, IgC_MHC_II_beta, Class II major histocompatibility complex
(MHC) beta chain immunoglobulin domain.
IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major
histocompatibility complex (MHC) class II beta chain.
MHC class II molecules play a key role in the initiation
of the antigen-specific immune reponse. In both humans
and in mice these molecules have been shown to be
expressed constitutively on the cell surface of
professional antigen-presenting cells (APCs), for
example on B-lymphocytes, monocytes, and macrophages.
The expression of these molecules has been shown to be
induced in nonprofessional APCs such as keratinocyctes,
and they are expressed on the surface of activated human
T cells and on T cells from other species. The MHC II
molecules present antigenic peptides to CD4(+)
T-lymphocytes. These peptides derive mostly from
protelytic processing via the endocytic pathway, of
antigens internalized by the APC. These peptides bind to
the MHC class II molecules in the endosome before they
are transported to the cell surface. MHC class II
molecules are heterodimers, comprised of two
similarly-sized membrane-spanning chains, alpha and
beta. Each chain had two globular domains (N- and
C-terminal), and a membrane-anchoring transmembrane
segment. The two chains form a compact four-domain
structure. The peptide-binding site is a cleft in the
structure.
Length = 94
Score = 28.1 bits (63), Expect = 6.6
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Query: 236 PKVQVSVIGSNRLVEGTDVRLYCKAEA-NPSHMKYRWYINDQPVPAAASATELY 288
P V++S S L C P + +W+ N Q +TEL
Sbjct: 1 PSVKISP--SQTGSLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELI 52
>gnl|CDD|143195 cd05718, Ig1_PVR_like, First immunoglobulin (Ig) domain of
poliovirus receptor (PVR, also known as CD155) and
similar proteins. Ig1_PVR_like: domain similar to the
first immunoglobulin (Ig) domain of poliovirus receptor
(PVR, also known as CD155). Poliovirus (PV) binds to its
cellular receptor (PVR/CD155) to initiate infection.
CD155 is a membrane-anchored, single-span glycoprotein;
its extracellular region has three Ig-like domains.
There are four different isotypes of CD155 (referred to
as alpha, beta, gamma, and delta), that result from
alternate splicing of the CD155 mRNA, and have identical
extracellular domains. CD155-beta and - gamma, are
secreted, CD155-alpha and delta are membrane-bound and
function as PV receptors. The virus recognition site is
contained in the amino-terminal domain, D1. Having the
virus attachment site on the receptor distal from the
plasma membrane, may be important for successful
initiation of infection of cells by the virus. CD155
binds in the poliovirus "canyon" with a footprint
similar to that of the intercellular adhesion molecule-1
receptor on human rhinoviruses. This group also includes
the first Ig-like domain of nectin-1 (also known as
poliovirus receptor related protein(PVRL)1; CD111),
nectin-3 (also known as PVRL 3), nectin-4 (also known as
PVRL4; LNIR receptor)and DNAX accessory molecule 1
(DNAM-1; CD226).
Length = 98
Score = 28.1 bits (63), Expect = 6.7
Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 21/103 (20%)
Query: 43 SRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFD-RYAM-IGSDEEG-------- 88
VTL C V + W K G +N++ F +Y + I EG
Sbjct: 1 ESVTLECSFPVPGPVQITQVTWMKITG--GSKQNIAVFHPQYGISIPPSYEGRVSFLNSS 58
Query: 89 --DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVL 129
D ++ I + L+D+ Y C+ +T G R + TLTVL
Sbjct: 59 LEDATISISNLRLEDEGNYICEFATFPQGN---RQKVTTLTVL 98
>gnl|CDD|214973 smart01010, AMPKBI, 5'-AMP-activated protein kinase beta subunit,
interation domain. This region is found in the beta
subunit of the 5'-AMP-activated protein kinase complex,
and its yeast homologues Sip1, Sip2 and Gal83, which are
found in the SNF1 kinase complex. This region is
sufficient for interaction of this subunit with the
kinase complex, but is not solely responsible for the
interaction, and the interaction partner is not known.
The isoamylase N-terminal domain is sometimes found in
proteins belonging to this family.
Length = 100
Score = 28.1 bits (63), Expect = 7.6
Identities = 14/47 (29%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 867 VFSDFIRDYNQTLPKLAPSPHLPPSLSNSVIVTDKTP---PPSHLTI 910
F+D K P LPP L ++ T T PS L I
Sbjct: 14 CFTDDDFIEESPEEKWKEPPALPPHLEKVILNTSSTATREDPSLLPI 60
>gnl|CDD|188032 TIGR00195, exoDNase_III, exodeoxyribonuclease III. The model
brings in reverse transcriptases at scores below 50,
model also contains eukaryotic apurinic/apyrimidinic
endonucleases which group in the same family [DNA
metabolism, DNA replication, recombination, and repair].
Length = 254
Score = 29.3 bits (66), Expect = 9.1
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 656 PPPEKVTW-SYR--GEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESR 699
P +W YR + G DY ++ +PLKE I + R
Sbjct: 193 PDEGAYSWWDYRTKARDRNRGWRIDYFLVSEPLKERCVDCGIDYDIR 239
>gnl|CDD|143288 cd05880, Ig_EVA1, Immunoglobulin (Ig)-like domain of epithelial
V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig)
domain of epithelial V-like antigen 1 (EVA). EVA is also
known as myelin protein zero-like 2. EVA is an adhesion
molecule, which may play a role in structural
organization of the thymus and early lymphocyte
development.
Length = 115
Score = 28.3 bits (63), Expect = 9.6
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 18/89 (20%)
Query: 643 GDTARVECSAFS---IPPPEKVTWSYRGEEIGVGSS------DDYSVLEDPLK------- 686
G R++C+ S I +TW++R + G S Y + K
Sbjct: 13 GTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDG 72
Query: 687 --EGIKSTLIIRESRHDHFGVYNCSVSNP 713
++++I + + G Y C V NP
Sbjct: 73 NIMRRDASILIWQLQPTDNGTYTCQVKNP 101
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.133 0.399
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 51,303,067
Number of extensions: 5061563
Number of successful extensions: 4998
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4779
Number of HSP's successfully gapped: 248
Length of query: 1011
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 905
Effective length of database: 6,236,078
Effective search space: 5643650590
Effective search space used: 5643650590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (28.4 bits)