RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17146
(1011 letters)
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 257 bits (659), Expect = 3e-73
Identities = 131/731 (17%), Positives = 224/731 (30%), Gaps = 121/731 (16%)
Query: 92 LEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQ--GDTLYTTEDR 149
+ + L + G + + P ++ + + +
Sbjct: 1 MNMPNERLKWLMLFAAVALI-ACGSQTLAANPPDADQK----GPVFLKEPTNRIDFSNST 55
Query: 150 EIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNT 209
E+EC A+G P EI WI GT + +V + S DG+ ++E H
Sbjct: 56 GAEIEC-KASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGK-LVFPPFRAEDYRQEVHAQ 113
Query: 210 TFTCQAQNTA--DRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHM 267
+ C A+N + V + A + V ++ G + C + +
Sbjct: 114 VYACLARNQFGSIISRDV---HVRAVVAQYYEADV-NKEHVIRGNSAVIKCLIPSFVADF 169
Query: 268 K--YRWYINDQPVPAAASAT----------ELYLTNITRHQHDSIVKCEVQVSVIGSNRL 315
W+ +++ + EL++ + +C + + G RL
Sbjct: 170 VEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRL 229
Query: 316 -------------------------------VEGTDVRLYCKAEANPSHMKYRWYINDQP 344
+ + L C A+ P +RWY +
Sbjct: 230 SATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVP-VFRWYKFIEG 288
Query: 345 VPAAASAT----------ELYLTNITRHQHDSIV-KCEVHNDVGKSEDSETLDVTYGPRF 393
+ L + + DS C V+N VG L VT
Sbjct: 289 TTRKQAVVLNDRVKQVSGTLIIKDAV--VEDSGKYLCVVNNSVGGESVETVLTVTAPLSA 346
Query: 394 RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYY 453
+ P + VD G C GNP ++W+ D + + L + + G Y
Sbjct: 347 KIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMK-DGKAIGHSESVLRIESVKKEDKGMYQ 405
Query: 454 CKAS-VMGFPEVGAEATVYLKGRPTIISH--RTQFGIPGDTARVECSAFSIPPPEKVTWS 510
C E AE + + P +I + + PG + ++C A P PE ++W
Sbjct: 406 CFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPE-ISWE 464
Query: 511 YRGEEIG-------------------------VGSSD--DYSVH--NDVGKSEDSETLDV 541
G++I V ++D Y + VG +E S L+V
Sbjct: 465 LDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNV 524
Query: 542 TYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED----SDKVVGNSPNLTLLM 597
P R + + G + + C V G P I W ++ ++ PN TL++
Sbjct: 525 YGLPYIR-QMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLII 583
Query: 598 TSDDL---AGRYYCKASVMGFPEVGAEATVYLKGRPTIISHR--TQFGIPGDTARVECSA 652
+ + Y C A V + P II G + CS
Sbjct: 584 ENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSV 643
Query: 653 FSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSN 712
P + W+ G+ I S D + G S L I H G + C N
Sbjct: 644 PGGDLPLNIDWTLDGQAI---SEDLGITTSRVGRRG--SVLTIEAVEASHAGNFTCHARN 698
Query: 713 PYGSDSVEIML 723
G L
Sbjct: 699 LAGHQQFTTPL 709
Score = 251 bits (642), Expect = 7e-71
Identities = 136/807 (16%), Positives = 234/807 (28%), Gaps = 153/807 (18%)
Query: 29 KFAMEPQDQTAV-VGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAMIG 83
F EP ++ + + C+ +G + W + D G R
Sbjct: 40 VFLKEPTNRIDFSNSTGAEIECKA---SGNPMPEIIWIRSD---GTAVGDVPGLRQIS-- 91
Query: 84 SDEEGDYSLEIYPVMLDDDA------RYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRI 137
D L P +D Y C G I SR + +V
Sbjct: 92 ----SDGKLVFPPFRAEDYRQEVHAQVYACLAR-NQFGS--IISRDVHVRAVVAQYYEAD 144
Query: 138 VQGDTLYTTEDREIELECI--SANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVK 195
V + ++C+ S ++W + + V
Sbjct: 145 VN--KEHVIRGNSAVIKCLIPSFVADFVEVVSWH------TDEEENYFPGAEYDGKYLVL 196
Query: 196 STLVLT---PKKEHHNTTFTCQAQNTADRTYKVARLKLLV--------KYAPKVQVSVIG 244
+ L E ++ C+ ++ +++ K + V ++
Sbjct: 197 PSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFD 256
Query: 245 SNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT----------ELYLTNITR 294
+ + L C A+ P +RWY + + L + +
Sbjct: 257 MKTYSGSSTMALLCPAQGYPVP-VFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAV- 314
Query: 295 HQHDS------------IVKCEVQVSVIG---------SNRLVEGTDVRLYCKAEANPSH 333
DS E ++V + + G C+ NP
Sbjct: 315 -VEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIK 373
Query: 334 MKYRWYINDQPVPAAASATELYLTNITRHQHDS-IVKCEVHNDVGKSEDSETLDVTYG-- 390
W + + + S + L + ++ + D + +C V ND +E S L +
Sbjct: 374 -TVSWMKDGKAIGH--SESVLRIESVKKE--DKGMYQCFVRNDRESAEASAELKLGGRFD 428
Query: 391 -PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----------SDKVVGNSPN 438
P R ++ G V L C GNP PEI+W + V N
Sbjct: 429 PPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDV 488
Query: 439 LTLLM----TSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTAR 493
++ L ++D G Y C A +G A + + G P I + + G+T
Sbjct: 489 VSYLNITSVHAND-GGLYKCIAKSKVG--VAEHSAKLNVYGLPYIRQMEKKAIVAGETLI 545
Query: 494 VECSAFSIPPPEKVTWSYRGEEIGVGS------------------SD--DYS--VHNDVG 531
V C P + W + + SD Y+ N G
Sbjct: 546 VTCPVAGYPIDS-IVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEG 604
Query: 532 KS-EDSETLDVTYGPRFRARPYSVQ-VDRGAGVNLLCDVDGNPAP-EITWIHEDS----- 583
S S + V PR + G + L C V G P I W +
Sbjct: 605 YSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISED 664
Query: 584 -----DKVVGNSPNLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISH-R 636
+V LT+ AG + C A + G + + P I
Sbjct: 665 LGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAG--HQQFTTPLNVYVPPRWILEPT 722
Query: 637 TQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIR 696
+ G A+VEC A P P+ VTW + + + + + TL +
Sbjct: 723 DKAFAQGSDAKVECKADGFPKPQ-VTWKKAVGDT---PGEYKDLKKSDNIRVEEGTLHVD 778
Query: 697 ESRHDHFGVYNCSVSNPYGSDSVEIML 723
+ + G Y C N GS +++
Sbjct: 779 NIQKTNEGYYLCEAINGIGSGLSAVIM 805
Score = 242 bits (620), Expect = 8e-68
Identities = 114/678 (16%), Positives = 202/678 (29%), Gaps = 117/678 (17%)
Query: 28 QKFAMEPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAMIG 83
Q + + + + G+ + C + V+ W D+ +Y ++
Sbjct: 139 QYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYD-GKYLVLP 197
Query: 84 SDEEGDYSLEIYPVMLDDDA-RYQCQVSTGILGEPAIRSRFATLTVLVPP---DPPRIVQ 139
L I V +D YQC+ L S V+ P P++V
Sbjct: 198 -----SGELHIREVGPEDGYKSYQCRT-KHRLTGETRLSATKGRLVITEPISSAVPKVVS 251
Query: 140 GDTLYTT---EDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKS 196
+ L C A G P W V ++ R V
Sbjct: 252 LAKFDMKTYSGSSTMALLCP-AQGYPVPVFRWYKFIEGTTRKQAVV----LNDRVKQVSG 306
Query: 197 TLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRL 256
TL++ + + C N+ L V ++ + + G
Sbjct: 307 TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLT--VTAPLSAKID-PPTQTVDFGRPAVF 363
Query: 257 YCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRH-----------QHDSIVKCEV 305
C+ NP W + + + S + L + ++ + +S +
Sbjct: 364 TCQYTGNPIK-TVSWMKDGKAIGH--SESVLRIESVKKEDKGMYQCFVRNDRESA-EASA 419
Query: 306 QVSVIGSNR------------LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT- 352
++ + G + G V L C A NP+ + W ++ + +
Sbjct: 420 ELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPT-PEISWELDGKKIANNDRYQV 478
Query: 353 ------------ELYLTNITRHQHDSIV-KCEVHNDVGKSEDSETLDVTYGPRFRARPYS 399
L +T++ + D + KC + VG +E S L+V P R +
Sbjct: 479 GQYVTVNGDVVSYLNITSVHAN--DGGLYKCIAKSKVGVAEHSAKLNVYGLPYIR-QMEK 535
Query: 400 VQVDRGAGVNLLCDVDGNPAPEITWIHED----SDKVVGNSPNLTLLMTSDDL---AGRY 452
+ G + + C V G P I W ++ ++ PN TL++ + + Y
Sbjct: 536 KAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATY 595
Query: 453 YCKASVMGFPEVGAEATVYLKGRPTIISHR--TQFGIPGDTARVECSAFSIPPPEKVTWS 510
C A V + P II G + CS P + W+
Sbjct: 596 TCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWT 655
Query: 511 YRGEEI---------------------GVGSSDDY----SVHNDVGKSEDSETLDVTYGP 545
G+ I V +S N G + + L+V P
Sbjct: 656 LDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPP 715
Query: 546 RFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED------------SDKVVGNSPNL 593
R+ P +G+ + C DG P P++TW SD + L
Sbjct: 716 RWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTL 775
Query: 594 TLLMTSDDLAGRYYCKAS 611
+ G Y C+A
Sbjct: 776 HVDNIQKTNEGYYLCEAI 793
Score = 201 bits (512), Expect = 8e-54
Identities = 110/644 (17%), Positives = 182/644 (28%), Gaps = 125/644 (19%)
Query: 210 TFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKY 269
F A A + P T + CKA NP +
Sbjct: 13 LFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPM-PEI 71
Query: 270 RWYIND-QPVPAAASATE------LYLTNITRHQHD-----------------SIVKCEV 305
W +D V + L + SI+ +V
Sbjct: 72 IWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDV 131
Query: 306 QVSVIGSNR---------LVEGTDVRLYCKAEANPSHMK--YRWYINDQPVPAAASAT-- 352
V + + ++ G + C + + W+ +++ +
Sbjct: 132 HVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDG 191
Query: 353 --------ELYLTNITRHQHDSIVKCEVHNDVG---KSEDSETLDVTYGPRFRARP---- 397
EL++ + +C + + + ++ V P A P
Sbjct: 192 KYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVS 251
Query: 398 ----YSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----------SDKVVGNSPNLTLL 442
+ + LLC G P P W +D+V S L +
Sbjct: 252 LAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIK 311
Query: 443 MTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFS 500
+ +G+Y C + +G E + + + TQ G A C
Sbjct: 312 DAVVEDSGKYLCVVNNSVG--GESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTG 369
Query: 501 IPPPEKVTWSYRGEEI----------GVGSSD--DYS--VHNDVGKSEDSETLDVTYG-- 544
P V+W G+ I V D Y V ND +E S L +
Sbjct: 370 NPIKT-VSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFD 428
Query: 545 -PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----------SDKVVGNSPN 592
P R ++ G V L C GNP PEI+W + V N
Sbjct: 429 PPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDV 488
Query: 593 LTLLM----TSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTAR 647
++ L ++D G Y C A +G A + + G P I + + G+T
Sbjct: 489 VSYLNITSVHAND-GGLYKCIAKSKVG--VAEHSAKLNVYGLPYIRQMEKKAIVAGETLI 545
Query: 648 VECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRE-SRHDHFGVY 706
V C P + W + + V + TLII R+ Y
Sbjct: 546 VTCPVAGYPIDS-IVWERDNRALPINR--KQKVFPN-------GTLIIENVERNSDQATY 595
Query: 707 NCSVSNPYGSDS-----VEIMLKPQKSFPLLLILTGVIGCVVIL 745
C N G + V++M+ P+ +G + L
Sbjct: 596 TCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTL 639
Score = 175 bits (446), Expect = 2e-45
Identities = 102/573 (17%), Positives = 173/573 (30%), Gaps = 104/573 (18%)
Query: 5 TRVQSALWVLLALSMGSLAQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQW 60
SA L ++ + + + +T S + L C G +W
Sbjct: 226 ETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPA---QGYPVPVFRW 282
Query: 61 TKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIR 120
K + + DR ++ +L I +++D +Y C V+ +G
Sbjct: 283 YKFIEGTTRKQAVVLNDRV------KQVSGTLIIKDAVVEDSGKYLCVVNN-SVGG---E 332
Query: 121 SRFATLTVLVPP---DPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMS 177
S LTV P P R C G P ++W
Sbjct: 333 SVETVLTVTAPLSAKIDPPTQT-----VDFGRPAVFTC-QYTGNPIKTVSW--------- 377
Query: 178 NVRVTEEASVDGRR-TTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAP 236
DG+ +S L + K+ + C +N + A LKL ++ P
Sbjct: 378 --------MKDGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDP 429
Query: 237 KVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT----------- 285
V + G V L C A NP+ + W ++ + +
Sbjct: 430 PVIRQAFQEETMEPGPSVFLKCVAGGNPT-PEISWELDGKKIANNDRYQVGQYVTVNGDV 488
Query: 286 --ELYLTNITRHQHDS------------IVKCEVQVSVIG--------SNRLVEGTDVRL 323
L +T++ +D + + +++V G +V G + +
Sbjct: 489 VSYLNITSVHA--NDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIV 546
Query: 324 YCKAEANPSHMKYRWYINDQPVPAAASAT-----ELYLTNITRHQHDSIVKCEVHNDVGK 378
C P W +++ +P L + N+ R+ + C N G
Sbjct: 547 TCPVAGYPID-SIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGY 605
Query: 379 S-EDSETLDVTYGPRFRARPYSVQ-VDRGAGVNLLCDVDGNPAP-EITWIHEDS------ 429
S S + V PR + G + L C V G P I W +
Sbjct: 606 SARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDL 665
Query: 430 ----DKVVGNSPNLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISH-RT 483
+V LT+ AG + C A + G + + P I
Sbjct: 666 GITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAG--HQQFTTPLNVYVPPRWILEPTD 723
Query: 484 QFGIPGDTARVECSAFSIPPPEKVTWSYRGEEI 516
+ G A+VEC A P P+ VTW +
Sbjct: 724 KAFAQGSDAKVECKADGFPKPQ-VTWKKAVGDT 755
Score = 143 bits (363), Expect = 2e-35
Identities = 84/438 (19%), Positives = 125/438 (28%), Gaps = 94/438 (21%)
Query: 360 TRHQHDSIVKCEVHNDVGKSEDS--ETLDVTYGPRFRARPYS-VQVDRGAGVNLLCDVDG 416
R + + G + GP F P + + G + C G
Sbjct: 6 ERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIECKASG 65
Query: 417 NPAPEITWIHEDSDKVVGNSPNLTLLMTSDDL---------------AGRYYCKAS-VMG 460
NP PEI WI D VG+ P L + + L A Y C A G
Sbjct: 66 NPMPEIIWIRSDG-TAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFG 124
Query: 461 FPEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFSIP--PPEKVTWSYRGEEIG 517
+ + V + + I G++A ++C S E V+W EE
Sbjct: 125 S-IISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENY 183
Query: 518 ----------------------VGSSD---DYS--VHNDVG---KSEDSETLDVTYGPRF 547
VG D Y + + + ++ V P
Sbjct: 184 FPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPIS 243
Query: 548 RARP--------YSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----------SDKVVG 588
A P + + LLC G P P W +D+V
Sbjct: 244 SAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQ 303
Query: 589 NSPNLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTA 646
S L + + +G+Y C + +G E + + + TQ G A
Sbjct: 304 VSGTLIIKDAVVEDSGKYLCVVNNSVG--GESVETVLTVTAPLSAKIDPPTQTVDFGRPA 361
Query: 647 RVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706
C P V+W G+ IG S L I + + G+Y
Sbjct: 362 VFTCQYTGNPIKT-VSWMKDGKAIGHSE----------------SVLRIESVKKEDKGMY 404
Query: 707 NCSVSNPYGSDSVEIMLK 724
C V N S LK
Sbjct: 405 QCFVRNDRESAEASAELK 422
Score = 131 bits (332), Expect = 2e-31
Identities = 64/412 (15%), Positives = 123/412 (29%), Gaps = 80/412 (19%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAM--- 81
Q++T G V L C G + W D + + DRY +
Sbjct: 431 VIRQAFQEETMEPGPSVFLKCVA---GGNPTPEISWELDGKKIANN------DRYQVGQY 481
Query: 82 IGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGD 141
+ + + L I V +D Y+C + +G A L V P I Q +
Sbjct: 482 VTVNGDVVSYLNITSVHANDGGLYKCIAKS-KVGV---AEHSAKLNVYGLP---YIRQME 534
Query: 142 TLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLT 201
+ + C G P I W + N + +G TL++
Sbjct: 535 KKAIVAGETLIVTC-PVAGYPIDSIVWERDNRALPINRKQK--VFPNG-------TLIIE 584
Query: 202 PKKEHHNT-TFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKA 260
+ + + T+TC A+N + + L++ V P++ G + L+C
Sbjct: 585 NVERNSDQATYTCVAKNQEGYSAR-GSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSV 643
Query: 261 EANPSHMKYRWYINDQPVPA---------AASATELYLTNITRHQHDS------------ 299
+ W ++ Q + + L + + +
Sbjct: 644 PGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEAS--HAGNFTCHARNLAG 701
Query: 300 IVKCEVQVSV---------IGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAAS 350
+ ++V +G+D ++ CKA+ P + W P
Sbjct: 702 HQQFTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPK-PQVTWKKAVGDTPGEYK 760
Query: 351 ATE-----------LYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGP 391
+ L++ NI ++ CE N +G + +
Sbjct: 761 DLKKSDNIRVEEGTLHVDNIQ-KTNEGYYLCEAINGIGSGLSAVIMISVQAH 811
Score = 32.2 bits (73), Expect = 1.0
Identities = 3/38 (7%), Positives = 9/38 (23%)
Query: 693 LIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFP 730
+ + R ++ GS ++
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKG 38
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 237 bits (605), Expect = 3e-67
Identities = 118/648 (18%), Positives = 204/648 (31%), Gaps = 97/648 (14%)
Query: 33 EPQDQTAVVGSRVTLPCRVIDK-TGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEE---- 87
E G V L + + W K + G + +
Sbjct: 5 ESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGR 64
Query: 88 ----GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTL 143
+ SL I ++ +D Y V L V P I ++
Sbjct: 65 EIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVN---EEATGQFRVYPELPKPSISSNNSK 121
Query: 144 YTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPK 203
+ + C + + W++ +S + + TL L
Sbjct: 122 PVEDKDAVAFTC-EPETQDATYLWWVNNQSLPVSP---------RLQLSNGNRTLTLFNV 171
Query: 204 KEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEAN 263
+ ++ C+ QN + + L V Y P + G ++ L C A +N
Sbjct: 172 TRNDTASYKCETQNPVS-ARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASN 230
Query: 264 PSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNR--------- 314
P +Y W++N S EL++ NIT + C+ S G NR
Sbjct: 231 P-PAQYSWFVNGTFQQ---STQELFIPNITV-NNSGSYTCQAHNSDTGLNRTTVTTITVY 285
Query: 315 ---------------LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT------E 353
+ + V L C+ E + Y W++N+Q +P +
Sbjct: 286 AEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTT--YLWWVNNQSLPVSPRLQLSNDNRT 343
Query: 354 LYLTNITRHQHDSIVKCEVHNDVGKSE-DSETLDVTYGP-RFRARPYSVQVDRGAGVNLL 411
L L ++TR +C + N++ D L+V YGP P G ++L
Sbjct: 344 LTLLSVTR-NDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLS 402
Query: 412 CDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATV 470
C NP + +W+ + + ++ L + ++ +G Y C+A+ T+
Sbjct: 403 CHAASNPPAQYSWLID--GNIQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTI 460
Query: 471 YLKGRPTIISHRTQFGIP---GDTARVECSAFSIPPPEKVTWSYRGEEI----------- 516
+ S + P D C + W G+ +
Sbjct: 461 TVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTT--YLWWVNGQSLPVSPRLQLSNG 518
Query: 517 -------GVGSSD--DYS--VHNDVGKSE-DSETLDVTYGP-RFRARPYSVQVDRGAGVN 563
V +D Y + N V + D TLDV YGP P GA +N
Sbjct: 519 NRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLN 578
Query: 564 LLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS 611
L C NP+P+ +W ++ L + + + G Y C S
Sbjct: 579 LSCHSASNPSPQYSWRIN--GIPQQHTQVLFIAKITPNNNGTYACFVS 624
Score = 233 bits (596), Expect = 5e-66
Identities = 108/668 (16%), Positives = 205/668 (30%), Gaps = 109/668 (16%)
Query: 130 VPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDG---------TGTVMSNVR 180
+ P + +G + L + +W G G V+ +
Sbjct: 4 IESTPFNVAEGKE--------VLLLV-HNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQ 54
Query: 181 VTEEASVDGRRTTVKS-TLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQ 239
T + GR + +L++ ++ +T + + + PK
Sbjct: 55 ATPGPAYSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPS 114
Query: 240 VSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT------ELYLTNIT 293
+S S + + V C+ E + Y W++N+Q +P + L L N+T
Sbjct: 115 ISSNNSKPVEDKDAVAFTCEPETQDAT--YLWWVNNQSLPVSPRLQLSNGNRTLTLFNVT 172
Query: 294 -----------RHQHDSIVKCEVQVSVIGSNR----------LVEGTDVRLYCKAEANPS 332
++ + V ++V+ G ++ L C A +NP
Sbjct: 173 RNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNP- 231
Query: 333 HMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVT---- 388
+Y W++N S EL++ NIT + C+ HN + +T
Sbjct: 232 PAQYSWFVNGTFQQ---STQELFIPNITV-NNSGSYTCQAHNSDTGLNRTTVTTITVYAE 287
Query: 389 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDS------DKVVGNSPNLTLL 442
F S V+ V L C+ + + W++ S ++ ++ LTLL
Sbjct: 288 PPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLL 347
Query: 443 MTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTI--ISHRTQFGIPGDTARVECSAFS 500
+ + G Y C + + + P IS + PG + C A S
Sbjct: 348 SVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAAS 407
Query: 501 IPPPEKVTWSYRGEEI---------GVGSSD--DYS--VHNDVGKSEDSETLDVTYGPR- 546
PP + +W G + + Y+ +N + +T
Sbjct: 408 NPPAQ-YSWLIDGNIQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAEL 466
Query: 547 ---FRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH------EDSDKVVGNSPNLTLLM 597
+ S V+ V C+ + + W++ ++ + LTL
Sbjct: 467 PKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFN 526
Query: 598 TSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQF--GIPGDTARVECSAFSI 655
+ + A Y C T+ + P + G + C + S
Sbjct: 527 VTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASN 586
Query: 656 PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYG 715
P P+ +W G L I + ++ G Y C VSN
Sbjct: 587 PSPQ-YSWRINGIPQQHT-----------------QVLFIAKITPNNNGTYACFVSNLAT 628
Query: 716 SDSVEIML 723
+ I+
Sbjct: 629 GRNNSIVK 636
Score = 203 bits (517), Expect = 2e-55
Identities = 95/564 (16%), Positives = 165/564 (29%), Gaps = 109/564 (19%)
Query: 249 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT----------------------- 285
EG +V L Y WY ++
Sbjct: 12 AEGKEVLLLVHNLPQH-LFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPN 70
Query: 286 -ELYLTNITR-----------HQHDSIVKCEVQVSVI-----------GSNRLVEGTDVR 322
L + NI + + Q V S + + V
Sbjct: 71 ASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVA 130
Query: 323 LYCKAEANPSHMKYRWYINDQPVPAAASAT------ELYLTNITRHQHDS-IVKCEVHND 375
C+ E + Y W++N+Q +P + L L N+TR+ D+ KCE N
Sbjct: 131 FTCEPETQDAT--YLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRN--DTASYKCETQNP 186
Query: 376 VGKSE-DSETLDVTYGPRF-RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV 433
V DS L+V YGP P + G +NL C NP + +W
Sbjct: 187 VSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVN--GTFQ 244
Query: 434 GNSPNLTLLMTSDDLAGRYYCKA-SVMGFPEVGAEATV---YLKGRPTIISHRTQFGIPG 489
++ L + + + +G Y C+A + T+ +P I S+ +
Sbjct: 245 QSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDE 304
Query: 490 DTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYS----------------------VH 527
D + C W + + V S +
Sbjct: 305 DAVALTCEPEIQNTT--YLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQ 362
Query: 528 NDVGKSE-DSETLDVTYGP-RFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDK 585
N++ D L+V YGP P G ++L C NP + +W+ +
Sbjct: 363 NELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLID--GN 420
Query: 586 VVGNSPNLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISHRTQFGIP-- 642
+ ++ L + ++ +G Y C+A+ T+ + S + P
Sbjct: 421 IQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVE 480
Query: 643 -GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHD 701
D C + W G+ + S + TL + +
Sbjct: 481 DKDAVAFTCEPEAQNTT--YLWWVNGQSL--PVSPRLQLSNG------NRTLTLFNVTRN 530
Query: 702 HFGVYNCSVSNPYGSD-SVEIMLK 724
Y C + N ++ S + L
Sbjct: 531 DARAYVCGIQNSVSANRSDPVTLD 554
Score = 195 bits (496), Expect = 1e-52
Identities = 98/565 (17%), Positives = 182/565 (32%), Gaps = 97/565 (17%)
Query: 33 EPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSL 92
+ V C + W ++ ++L R + G+ +L
Sbjct: 117 SNNSKPVEDKDAVAFTCEPETQDATYLWWVNN------QSLPVSPRLQLS----NGNRTL 166
Query: 93 EIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIE 152
++ V +D A Y+C+ + A RS L VL PD P I +
Sbjct: 167 TLFNVTRNDTASYKCETQNP-VS--ARRSDSVILNVLYGPDAPTI-SPLNTSYRSGENLN 222
Query: 153 LECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFT 212
L C A PPA+ +W V+G L + +++ ++T
Sbjct: 223 LSC-HAASNPPAQYSWF-----------------VNGTFQQSTQELFIPNITVNNSGSYT 264
Query: 213 CQAQNTADRTYKVARLKLLVKYAP-KVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRW 271
CQA N+ + + V P K ++ SN + + V L C+ E + Y W
Sbjct: 265 CQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTT--YLW 322
Query: 272 YINDQPVPAAASAT------ELYLTNITRHQHDSIVKCEVQVSVIGSNR----------- 314
++N+Q +P + L L ++TR +C +Q + + +
Sbjct: 323 WVNNQSLPVSPRLQLSNDNRTLTLLSVTR-NDVGPYECGIQ-NELSVDHSDPVILNVLYG 380
Query: 315 ------------LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRH 362
G ++ L C A +NP +Y W I+ EL+++NIT
Sbjct: 381 PDDPTISPSYTYYRPGVNLSLSCHAASNPP-AQYSWLIDGNIQQ---HTQELFISNITE- 435
Query: 363 QHDSIVKCEVHNDVGKSEDSETLDVTYGPR----FRARPYSVQVDRGAGVNLLCDVDGNP 418
++ + C+ +N + +T + S V+ V C+ +
Sbjct: 436 KNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQN 495
Query: 419 APEITWIH------EDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYL 472
+ W++ ++ + LTL + + A Y C T+ +
Sbjct: 496 TTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDV 555
Query: 473 KGRPTIISHRTQF--GIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSS--------D 522
P + G + C + S P P+ +W G +
Sbjct: 556 LYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQ-YSWRINGIPQQHTQVLFIAKITPN 614
Query: 523 DY-----SVHNDVGKSEDSETLDVT 542
+ V N +S +T
Sbjct: 615 NNGTYACFVSNLATGRNNSIVKSIT 639
Score = 172 bits (437), Expect = 4e-45
Identities = 90/472 (19%), Positives = 150/472 (31%), Gaps = 85/472 (18%)
Query: 24 QYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRY 79
Y + P + + G + L C W + + L
Sbjct: 200 LYGPDAPTISPLNTSYRSGENLNLSCHA---ASNPPAQYSWFVNGTFQQSTQELF----- 251
Query: 80 AMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQ 139
I + +++ Y CQ G R+ T+TV P P I
Sbjct: 252 --------------IPNITVNNSGSYTCQAHNSDTGLN--RTTVTTITVYAEPPKPFITS 295
Query: 140 GDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLV 199
++ ++ + L C + + W++ +S + + TL
Sbjct: 296 NNSNPVEDEDAVALTCE-PEIQNTTYLWWVNNQSLPVSP---------RLQLSNDNRTLT 345
Query: 200 LTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCK 259
L + + C QN + L V Y P G ++ L C
Sbjct: 346 LLSVTRNDVGPYECGIQNELSVD-HSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCH 404
Query: 260 AEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDS------------IVKCEVQV 307
A +NP +Y W I+ EL+++NIT +S
Sbjct: 405 AASNPP-AQYSWLIDGNIQQ---HTQELFISNITE--KNSGLYTCQANNSASGHSRTTVK 458
Query: 308 SVIG-------------SNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATE- 353
++ S + + V C+ EA + Y W++N Q +P +
Sbjct: 459 TITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTT--YLWWVNGQSLPVSPRLQLS 516
Query: 354 -----LYLTNITRHQHDS-IVKCEVHNDVGKSE-DSETLDVTYGP-RFRARPYSVQVDRG 405
L L N+TR +D+ C + N V + D TLDV YGP P G
Sbjct: 517 NGNRTLTLFNVTR--NDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSG 574
Query: 406 AGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS 457
A +NL C NP+P+ +W ++ L + + + G Y C S
Sbjct: 575 ANLNLSCHSASNPSPQYSWRIN--GIPQQHTQVLFIAKITPNNNGTYACFVS 624
Score = 143 bits (362), Expect = 1e-35
Identities = 56/383 (14%), Positives = 97/383 (25%), Gaps = 70/383 (18%)
Query: 392 RFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW-------------------------IH 426
+ V G V LL +W
Sbjct: 1 KLTIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPA 60
Query: 427 EDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKG---RPTIISHRT 483
+++ + +L + + G Y A + +P+I S+ +
Sbjct: 61 YSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNS 120
Query: 484 QFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYS------------------ 525
+ D C + W + + V S
Sbjct: 121 KPVEDKDAVAFTCEPETQDAT--YLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTAS 178
Query: 526 ----VHNDVGKSE-DSETLDVTYGPRF-RARPYSVQVDRGAGVNLLCDVDGNPAPEITWI 579
N V DS L+V YGP P + G +NL C NP + +W
Sbjct: 179 YKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWF 238
Query: 580 HEDSDKVVGNSPNLTLLMTSDDLAGRYYCKA-SVMGFPEVGAEATV---YLKGRPTIISH 635
++ L + + + +G Y C+A + T+ +P I S+
Sbjct: 239 VN--GTFQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSN 296
Query: 636 RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLII 695
+ D + C W + + V S TL +
Sbjct: 297 NSNPVEDEDAVALTCEPEIQNTT--YLWWVNNQSLPVSPRLQLS--------NDNRTLTL 346
Query: 696 RESRHDHFGVYNCSVSNPYGSDS 718
+ G Y C + N D
Sbjct: 347 LSVTRNDVGPYECGIQNELSVDH 369
Score = 86.2 bits (213), Expect = 2e-17
Identities = 34/205 (16%), Positives = 60/205 (29%), Gaps = 32/205 (15%)
Query: 28 QKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEE 87
+ + V C + W + ++L R +
Sbjct: 468 KPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNG------QSLPVSPRLQLS----N 517
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTE 147
G+ +L ++ V +D Y C + + RS TL VL PD P I D+
Sbjct: 518 GNRTLTLFNVTRNDARAYVCGIQNSV-SA--NRSDPVTLDVLYGPDTPIISPPDS-SYLS 573
Query: 148 DREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHH 207
+ L C + P + +W ++G L + ++
Sbjct: 574 GANLNLSC-HSASNPSPQYSW-----------------RINGIPQQHTQVLFIAKITPNN 615
Query: 208 NTTFTCQAQNTADRTYKVARLKLLV 232
N T+ C N A + V
Sbjct: 616 NGTYACFVSNLATGRNNSIVKSITV 640
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 225 bits (575), Expect = 1e-63
Identities = 111/564 (19%), Positives = 190/564 (33%), Gaps = 106/564 (18%)
Query: 250 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT--------ELYLTNITRHQHDS-- 299
G + L CK + P ++ WY + +A + L + + D
Sbjct: 19 IGEPITLQCKVDGTP-EIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHS--DVGE 75
Query: 300 ----------IVKCEVQVSVIGSN------------RLVEGTDVRLYCKAEANPSHMKYR 337
V + + G V C+ + ++
Sbjct: 76 YTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSE-PLQVS 134
Query: 338 WYINDQPVPAAASAT--------ELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTY 389
WY + + + A+ L + + H C N +G + S L ++
Sbjct: 135 WYKDGELLKDDANLQTSFIHNVATLQILQTDQ-SHVGQYNCSASNPLGTASSSAKLTLSE 193
Query: 390 G---PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD---------KVVGNSP 437
P F +P SV + G C V G +ITW ++ + +V N+
Sbjct: 194 HEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTA 253
Query: 438 NLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISH--RTQFGIPGDTARV 494
LT+L + AG+Y C AS V G + A + ++ P I ++ + R
Sbjct: 254 TLTVLKVTKGDAGQYTCYASNVAG--KDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRY 311
Query: 495 ECSAFSIPPPEKVTWSYRGEEI--------------------GVGSSD--DYS--VHNDV 530
EC P + V W EI + D DY+ HN
Sbjct: 312 ECKIGGSPEIK-VLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAA 370
Query: 531 GKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDK 585
G + S +L V P FR +P+ V+ +GA V+L C++ G P +++W + K
Sbjct: 371 GSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKK 430
Query: 586 VV----GNSPNLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISH-RTQF 639
++ +L G Y CKAS +G ++ LK P +
Sbjct: 431 YKIMSENFLTSIHILNVDSADIGEYQCKASNDVG--SDTCVGSITLKAPPRFVKKLSDIS 488
Query: 640 GIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESR 699
+ G+ +++ + P V W EI V SD+ + +TL +
Sbjct: 489 TVVGEEVQLQATIEGAEPIS-VAWFKDKGEI-VRESDNIWISYS----ENIATLQFSRAE 542
Query: 700 HDHFGVYNCSVSNPYGSDSVEIML 723
+ G Y C + N G+ L
Sbjct: 543 PANAGKYTCQIKNEAGTQECFATL 566
Score = 211 bits (540), Expect = 6e-59
Identities = 90/469 (19%), Positives = 157/469 (33%), Gaps = 75/469 (15%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNI-------TRHQHDSIVK 369
G + L CK + P ++ WY + +A + + N+ H
Sbjct: 19 IGEPITLQCKVDGTP-EIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYT 77
Query: 370 CEVHNDVGKSEDSETLDVTYG---PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW-- 424
C+ N VG S L + P F + V G V C ++G+ +++W
Sbjct: 78 CKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYK 137
Query: 425 ----IHEDSD-KVVGNSPNLTLLMTSDDL--AGRYYCKAS-VMGFPEVGAEATVYLKGR- 475
+ +D++ + TL + D G+Y C AS +G + A + L
Sbjct: 138 DGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLG--TASSSAKLTLSEHE 195
Query: 476 --PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEI---------------- 516
P + G++ +C P + +TW+ EI
Sbjct: 196 VPPFFDLKPVSVDLALGESGTFKCHVTGTAPIK-ITWAKDNREIRPGGNYKMTLVENTAT 254
Query: 517 ----GVGSSD--DYS--VHNDVGKSEDSETLDVTYGPRFRARPYSVQ-VDRGAGVNLLCD 567
V D Y+ N GK S L V PRF + + V + C
Sbjct: 255 LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECK 314
Query: 568 VDGNPAPEITWIHE-------DSDKVVGNSPNLTLLMTS---DDLAGRYYCKAS-VMGFP 616
+ G+P ++ W + ++ L M + +D +G Y C+A G
Sbjct: 315 IGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVED-SGDYTCEAHNAAG-- 371
Query: 617 EVGAEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSS 675
+ ++ +K P + G +EC PP + V+W E+ S
Sbjct: 372 SASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQ-VSWHKDKRELR--SG 428
Query: 676 DDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
Y ++ + +++ I G Y C SN GSD+ +
Sbjct: 429 KKYKIMSE----NFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSIT 473
Score = 206 bits (525), Expect = 5e-57
Identities = 111/561 (19%), Positives = 189/561 (33%), Gaps = 87/561 (15%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAMIGS 84
F + A +G +TL C+V G + W K+ L Y M
Sbjct: 7 YFIEPLEHVEAAIGEPITLQCKV---DGTPEIRIAWYKEHTKLRSA------PAYKMQFK 57
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQG-DTL 143
+ SL I V D Y C+ +G + S A L + PP + +
Sbjct: 58 NNVA--SLVINKVDHSDVGEYTCKAE-NSVGA--VASS-AVLVIKERKLPPSFARKLKDV 111
Query: 144 YTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPK 203
+ T + EC NG P +++W + ++A++ +TL +
Sbjct: 112 HETLGFPVAFEC-RINGSEPLQVSWYKD------GELLKDDANLQTSFIHNVATLQILQT 164
Query: 204 KEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEAN 263
+ H + C A N A+L L P S L G C
Sbjct: 165 DQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGT 224
Query: 264 PSHMKYRWYINDQPVPAAA--------SATELYLTNITRHQHDS------------IVKC 303
K W +++ + + L + +T + D+ C
Sbjct: 225 API-KITWAKDNREIRPGGNYKMTLVENTATLTVLKVT--KGDAGQYTCYASNVAGKDSC 281
Query: 304 EVQVSVIG----------SNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAA----- 348
Q+ V S + + R CK +P +K WY ++ + +
Sbjct: 282 SAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPE-IKVLWYKDETEIQESSKFRM 340
Query: 349 ---ASATELYLTNITRHQHDS-IVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDR 404
S L + N++ DS CE HN G + S +L V P FR +P+ V+ +
Sbjct: 341 SFVESVAVLEMYNLSV--EDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLK 398
Query: 405 GAGVNLLCDVDGNPAPEITWIHED-----SDKVV----GNSPNLTLLMTSDDLAGRYYCK 455
GA V+L C++ G P +++W + K ++ +L G Y CK
Sbjct: 399 GADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCK 458
Query: 456 AS-VMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRG 513
AS +G ++ LK P + + G+ +++ + P V W
Sbjct: 459 ASNDVG--SDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPIS-VAWFKDK 515
Query: 514 EEIGVGSSDDYSVHNDVGKSE 534
EI V SD+ + +
Sbjct: 516 GEI-VRESDNIWISYSENIAT 535
Score = 199 bits (507), Expect = 1e-54
Identities = 92/571 (16%), Positives = 172/571 (30%), Gaps = 112/571 (19%)
Query: 133 DPPRIVQG-DTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGR 190
+PP ++ + + I L+C +G P I W + T ++ + +
Sbjct: 4 EPPYFIEPLEHVEAAIGEPITLQC-KVDGTPEIRIAWYKEHT-------KLRSAPAYKMQ 55
Query: 191 RTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVE 250
++LV+ +TC+A+N+ A L + + P +
Sbjct: 56 FKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETL 115
Query: 251 GTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT--------ELYLTNITRHQHDSIVK 302
G V C+ + ++ WY + + + A+ L + + H
Sbjct: 116 GFPVAFECRINGSE-PLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQ-SHVGQYN 173
Query: 303 CEVQ-----------VSVIGSNR------------LVEGTDVRLYCKAEANPSHMKYRWY 339
C +++ L G C K W
Sbjct: 174 CSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPI-KITWA 232
Query: 340 INDQPVPAAA--------SATELYLTNITRHQHDS-IVKCEVHNDVGKSEDSETLDVTYG 390
+++ + + L + +T + D+ C N GK S L V
Sbjct: 233 KDNREIRPGGNYKMTLVENTATLTVLKVT--KGDAGQYTCYASNVAGKDSCSAQLGVQEP 290
Query: 391 PRFRARPYSVQ-VDRGAGVNLLCDVDGNPAPEITWIHE-------DSDKVVGNSPNLTLL 442
PRF + + V + C + G+P ++ W + ++ L
Sbjct: 291 PRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLE 350
Query: 443 MTS---DDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVECS 497
M + +D +G Y C+A G + ++ +K P + G +EC
Sbjct: 351 MYNLSVED-SGDYTCEAHNAAG--SASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECE 407
Query: 498 AFSIPPPEKVTWSYRGEEIGVGSSDDYSVH--------------------------NDVG 531
PP + V+W E+ S Y + NDVG
Sbjct: 408 LQGTPPFQ-VSWHKDKRELR--SGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVG 464
Query: 532 KSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSP 591
++ + PRF + + G V L ++G + W D ++V S
Sbjct: 465 SDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFK-DKGEIVRESD 523
Query: 592 N-----------LTLLMTSDDLAGRYYCKAS 611
N L AG+Y C+
Sbjct: 524 NIWISYSENIATLQFSRAEPANAGKYTCQIK 554
Score = 183 bits (465), Expect = 4e-49
Identities = 87/483 (18%), Positives = 151/483 (31%), Gaps = 85/483 (17%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
FA + +D +G V CR+ G + W KD L
Sbjct: 103 SFARKLKDVHETLGFPVAFECRI---NGSEPLQVSWYKDGELLKDD------ANLQTSFI 153
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQG-DTL 143
+L+I +Y C + LG S A LT+ PP ++
Sbjct: 154 HNVA--TLQILQTDQSHVGQYNCSA-SNPLGT---ASSSAKLTLSEHEVPPFFDLKPVSV 207
Query: 144 YTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPK 203
+C G P +ITW + + TL +
Sbjct: 208 DLALGESGTFKCH-VTGTAPIKITWAKDNREIRPGGNYKMTLVENTA------TLTVLKV 260
Query: 204 KEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEAN 263
+ +TC A N A + A+L V+ P+ + S + + R CK +
Sbjct: 261 TKGDAGQYTCYASNVAGKDSCSAQLG--VQEPPRFIKKLEPSRIVKQDEHTRYECKIGGS 318
Query: 264 PSHMKYRWYINDQPVPAA--------ASATELYLTNITRHQHDS------------IVKC 303
P +K WY ++ + + S L + N++ DS
Sbjct: 319 PE-IKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVE--DSGDYTCEAHNAAGSASS 375
Query: 304 EVQVSVIG---------SNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA----- 349
+ V ++G DV L C+ + P + W+ + + + +
Sbjct: 376 STSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPP-FQVSWHKDKRELRSGKKYKIM 434
Query: 350 ---SATELYLTNITRHQHDS-IVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRG 405
T +++ N+ D +C+ NDVG ++ + PRF + + G
Sbjct: 435 SENFLTSIHILNVDSA--DIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVG 492
Query: 406 AGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPN-----------LTLLMTSDDLAGRYYC 454
V L ++G + W D ++V S N L AG+Y C
Sbjct: 493 EEVQLQATIEGAEPISVAWFK-DKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTC 551
Query: 455 KAS 457
+
Sbjct: 552 QIK 554
Score = 176 bits (449), Expect = 5e-47
Identities = 86/385 (22%), Positives = 128/385 (33%), Gaps = 61/385 (15%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD---------KVVGNSPNLTL 441
P F V+ G + L C VDG P I W E + + N +L +
Sbjct: 6 PYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVI 65
Query: 442 LMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISH--RTQFGIPGDTARVECSA 498
G Y CKA +G A + + P + + G EC
Sbjct: 66 NKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRI 125
Query: 499 FSIPPPEKVTWSYRGEEI--------------------GVGSSD--DYS--VHNDVGKSE 534
P + V+W GE + S Y+ N +G +
Sbjct: 126 NGSEPLQ-VSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTAS 184
Query: 535 DSETLDVTYG---PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD------- 584
S L ++ P F +P SV + G C V G +ITW ++ +
Sbjct: 185 SSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNY 244
Query: 585 --KVVGNSPNLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISH--RTQF 639
+V N+ LT+L + AG+Y C AS V G + A + ++ P I ++
Sbjct: 245 KMTLVENTATLTVLKVTKGDAGQYTCYASNVAG--KDSCSAQLGVQEPPRFIKKLEPSRI 302
Query: 640 GIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESR 699
+ R EC P + V W EI S S +E + L +
Sbjct: 303 VKQDEHTRYECKIGGSPEIK-VLWYKDETEIQESSKFRMSFVES------VAVLEMYNLS 355
Query: 700 HDHFGVYNCSVSNPYGSDSVEIMLK 724
+ G Y C N GS S LK
Sbjct: 356 VEDSGDYTCEAHNAAGSASSSTSLK 380
Score = 127 bits (322), Expect = 7e-31
Identities = 71/402 (17%), Positives = 128/402 (31%), Gaps = 75/402 (18%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVI-DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEE 87
F ++P +G T C V + W KD+ + P Y M + E
Sbjct: 199 FFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPG------GNYKM--TLVE 250
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQG--DTLYT 145
+L + V D +Y C S + G+ S A L V PP R ++ +
Sbjct: 251 NTATLTVLKVTKGDAGQYTCYASN-VAGK---DSCSAQLGVQEPP---RFIKKLEPSRIV 303
Query: 146 TEDREIELECISANGKPPAEITW-IDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKK 204
+D EC G P ++ W D + E + + L +
Sbjct: 304 KQDEHTRYEC-KIGGSPEIKVLWYKDE-------TEIQESSKFRMSFVESVAVLEMYNLS 355
Query: 205 EHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANP 264
+ +TC+A N A LK VK P + ++G DV L C+ + P
Sbjct: 356 VEDSGDYTCEAHNAAGSASSSTSLK--VKEPPVFRKK-PHPVETLKGADVHLECELQGTP 412
Query: 265 SHMKYRWYINDQPVPAAA--------SATELYLTNITRHQHDS------------IVKCE 304
+ W+ + + + + T +++ N+ D C
Sbjct: 413 P-FQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSA--DIGEYQCKASNDVGSDTCV 469
Query: 305 VQVSV---------IGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAAS----- 350
+++ + V G +V+L E + W+ + + +
Sbjct: 470 GSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEP-ISVAWFKDKGEIVRESDNIWIS 528
Query: 351 ----ATELYLTNITRHQHDS-IVKCEVHNDVGKSEDSETLDV 387
L + ++ C++ N+ G E TL V
Sbjct: 529 YSENIATLQFSRAEPA--NAGKYTCQIKNEAGTQECFATLSV 568
Score = 60.6 bits (147), Expect = 2e-09
Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 12/102 (11%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVI-DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEE 87
+F + D + VVG V L + + + W KD + D + S+
Sbjct: 479 RFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRES-----DNIWISYSENI 533
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVL 129
+L+ + +Y CQ+ G + FATL+VL
Sbjct: 534 A--TLQFSRAEPANAGKYTCQIKNE-AGT---QECFATLSVL 569
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 208 bits (530), Expect = 1e-60
Identities = 70/300 (23%), Positives = 119/300 (39%), Gaps = 28/300 (9%)
Query: 33 EPQDQTAVVGSRVTLPCRV------IDKTGVLQWTKDD-------FALGPHRNLSGFDRY 79
P +G VTLPC + + L W + F + S R
Sbjct: 6 APTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRL 65
Query: 80 AMIGSD---EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPR 136
+ + E + SL ++ + ++D+ Y C T G RS L VL P
Sbjct: 66 EFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGS---RSVDIWLRVLAKPQNTA 122
Query: 137 IVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKS 196
VQ L T + C+S G+PPA+ITW G + + +V TV S
Sbjct: 123 EVQKVQL--TGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGF---LSGTVTVTS 177
Query: 197 TLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRL 256
+L P + TC+ ++ + ++ + L V Y P+V +S +N + + L
Sbjct: 178 LWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATL 237
Query: 257 YCKAEANPSHMKYRWYINDQPVP--AAASATELYLTNITRHQHDSIVKCEVQVSVIGSNR 314
C A +NP Y W P+P A A +L + + + + +++ C V + +G+ +
Sbjct: 238 TCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVDKPINTTLI-CNVT-NALGARQ 295
Score = 102 bits (254), Expect = 8e-24
Identities = 52/349 (14%), Positives = 87/349 (24%), Gaps = 77/349 (22%)
Query: 397 PYSVQVDRGAGVNLLCDVDGNPAP-----EITWIHEDSDKVVGNSPNLTLLMTSDDLAGR 451
P V G V L C + ++TW + S+
Sbjct: 7 PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLE 66
Query: 452 YYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSY 511
+ ++ + D C + P
Sbjct: 67 FVAARLGAELRNA------------SLRMFGLR---VEDEGNYTCLFVTFPQ-------- 103
Query: 512 RGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDV-DG 570
G L V P+ A VQ+ C G
Sbjct: 104 -------------------GSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGG 144
Query: 571 NPAPEITWIHED------------SDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEV 618
P +ITW + V + L+ +S CK F +
Sbjct: 145 RPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEK- 203
Query: 619 GAEATVYL----KGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGS 674
TV L +I + + + + A + C A S P P WS +
Sbjct: 204 PQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPL---- 259
Query: 675 SDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723
++V + + L+IR C+V+N G+ E+ +
Sbjct: 260 -PPFAVAQG-------AQLLIRPVDKPINTTLICNVTNALGARQAELTV 300
Score = 93.6 bits (232), Expect = 6e-21
Identities = 47/304 (15%), Positives = 76/304 (25%), Gaps = 68/304 (22%)
Query: 304 EVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYR----WYINDQPVPAAASATE------ 353
+V V G V L C + + + W + + A
Sbjct: 1 DVVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYS 60
Query: 354 --------------------LYLTNITRHQHDSIVKCEVHNDVGKSEDSET-LDVTYGPR 392
L + + + + C S + L V P+
Sbjct: 61 ESKRLEFVAARLGAELRNASLRMFGLRV-EDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQ 119
Query: 393 FRARPYSVQVDRGAGVNLLCDV-DGNPAPEITWIHED------------SDKVVGNSPNL 439
A VQ+ C G P +ITW + V +
Sbjct: 120 NTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLW 179
Query: 440 TLLMTSDDLAGRYYCKASVMGFPEVGAEATVYL----KGRPTIISHRTQFGIPGDTARVE 495
L+ +S CK F + TV L +I + + + + A +
Sbjct: 180 ILVPSSQVDGKNVTCKVEHESFEK-PQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLT 238
Query: 496 CSAFSIPPPEKVTWSYRGEEI--------------GVGSSD--DYS--VHNDVGKSEDSE 537
C A S P P WS + V V N +G +
Sbjct: 239 CDARSNPEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVDKPINTTLICNVTNALGARQAEL 298
Query: 538 TLDV 541
T+ V
Sbjct: 299 TVQV 302
Score = 93.2 bits (231), Expect = 8e-21
Identities = 46/311 (14%), Positives = 93/311 (29%), Gaps = 62/311 (19%)
Query: 128 VLVPPDPPRIVQGDTLYTTEDREIELECISANGKPP----AEITW------------IDG 171
V+ P GD+ + L C +++TW
Sbjct: 3 VVQAPTQVPGFLGDS--------VTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQT 54
Query: 172 TGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLL 231
G S + E + ++L + + +TC + + L
Sbjct: 55 QGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRS-VDIWLR 113
Query: 232 VKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA--------- 282
V P+ + +L C + + W+ + +P +
Sbjct: 114 VLAKPQNTA-EVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGT 172
Query: 283 -SATELYLTNITRHQHDSIVKCEVQ-----------------------VSVIGSNRLVEG 318
+ T L++ + V C+V+ +S +N +
Sbjct: 173 VTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQ 232
Query: 319 TDVRLYCKAEANPSHMKYRWYINDQPVP--AAASATELYLTNITRHQHDSIVKCEVHNDV 376
+ L C A +NP Y W P+P A A +L + + + + +++ C V N +
Sbjct: 233 NEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVDKPINTTLI-CNVTNAL 291
Query: 377 GKSEDSETLDV 387
G + T+ V
Sbjct: 292 GARQAELTVQV 302
Score = 67.0 bits (163), Expect = 4e-12
Identities = 30/248 (12%), Positives = 59/248 (23%), Gaps = 41/248 (16%)
Query: 551 PYSVQVDRGAGVNLLCDVDGNPAP-----EITW-----------IHEDSDKVVGNSPNLT 594
P V G V L C + ++TW H+ S L
Sbjct: 7 PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLE 66
Query: 595 LLMTSDDL----------------AGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQ 638
+ G Y C + + + +P + +
Sbjct: 67 FVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQK 126
Query: 639 FGI-PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRE 697
+ C + PP ++TW + + + S I+
Sbjct: 127 VQLTGEPVPMARCVSTGGRPPAQITWHSDLGGM---PNTSQVPGFLSGTVTVTSLWILVP 183
Query: 698 SRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFPLLLILTGVIGCVVILVALTMVVILCQR 757
S C V + + + +P + ++G + + C
Sbjct: 184 SSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWY--LGQNEATLTCD- 240
Query: 758 KVK-KPPP 764
+ P P
Sbjct: 241 -ARSNPEP 247
Score = 39.3 bits (91), Expect = 0.005
Identities = 21/112 (18%), Positives = 30/112 (26%), Gaps = 28/112 (25%)
Query: 24 QYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGV-----LQWTKDDFALGPHRNLSGFDR 78
Y + + + + TL C W+ L P G
Sbjct: 214 YYPPEVSISGYDNNWYLGQNEATLTCDA---RSNPEPTGYNWSTTMGPLPPFAVAQG--- 267
Query: 79 YAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLV 130
L I PV + C V+ + G +R A LTV V
Sbjct: 268 -----------AQLLIRPVDKPINTTLICNVTNAL-G-----ARQAELTVQV 302
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 216 bits (551), Expect = 4e-59
Identities = 111/780 (14%), Positives = 202/780 (25%), Gaps = 139/780 (17%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEG 88
+ +++ T + + + CR L W + G + + SD
Sbjct: 33 RLSIQKDILTIKANTTLQITCRG---QRDLDWLWPNNQSGSEQRVE-----VTECSDGLF 84
Query: 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTED 148
+L I V+ +D Y+C I + ++
Sbjct: 85 CKTLTIPKVIGNDTGAYKCFYR-ETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKN 143
Query: 149 REIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHN 208
+ + + C+ + + + + S D ++ + +
Sbjct: 144 KTVVIPCLGSISNLNVSLCARYPEKRFVPD---GNRISWDSKKG-----FTIPSYMISYA 195
Query: 209 TTFTCQAQNTADRTYKVARLKLLVKY-APKVQVSVIGSNRLVEGTDVRLYCKAEANPS-H 266
C+A+ + + + ++V Y V +S L G + L C A +
Sbjct: 196 GMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVG 255
Query: 267 MKYRWYINDQPVPAAASATELYLTNITRHQHDSI-------------------------- 300
+ + W T +
Sbjct: 256 IDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMT 315
Query: 301 VKCEVQVSVIGSNRL------------VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAA 348
K V V + G VR+ K P + +WY N P+ +
Sbjct: 316 KKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPP-PEIKWYKNGIPLESN 374
Query: 349 ---ASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSET--LDVTYGPRFRARPYSVQVD 403
+ L + ++ + + N + K + S L V P+ + VD
Sbjct: 375 HTIKAGHVLTIMEVSE-RDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVD 433
Query: 404 R---GAGVNLLCDVDGNPAPE-ITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVM 459
G L C V P P I W + ++ + +
Sbjct: 434 SYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQG 493
Query: 460 GFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVG 519
G + L +A +C A
Sbjct: 494 GNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEA--------------------- 532
Query: 520 SSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWI 579
N VG+ E + VT GP +P +Q V+L C D + +TW
Sbjct: 533 -------VNKVGRGERVISFHVTRGPEITLQP-DMQPTEQESVSLWCTADRSTFENLTWY 584
Query: 580 HEDSDKVVGNSPN-----------------------------LTLLMTSDDLAGRYYCKA 610
+ + + L S G Y C A
Sbjct: 585 KLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLA 644
Query: 611 S-VMGFPEVGAEATVYLKGR--PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYR 666
+ + R PTI + Q G++ V C+A PPP+ + W
Sbjct: 645 QDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQ-IMWFKD 703
Query: 667 GEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726
E + + + L IR R + G+Y C + G VE +
Sbjct: 704 NETLV--EDSGIVLKDG------NRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE 755
Score = 183 bits (465), Expect = 5e-48
Identities = 104/625 (16%), Positives = 173/625 (27%), Gaps = 106/625 (16%)
Query: 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGD 89
VG ++ L C + W + ++ + ++
Sbjct: 230 PSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFL 289
Query: 90 YSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYT-TED 148
+L I V D Y C S+G L + + V P ++L T
Sbjct: 290 STLTIDGVTRSDQGLYTCAASSG-LMT---KKNSTFVRVHEKPFVAFGSGMESLVEATVG 345
Query: 149 REIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHN 208
+ + G PP EI W + SN + L + E
Sbjct: 346 ERVRIPAK-YLGYPPPEIKWYKNGIPLESNHTIKAG-----------HVLTIMEVSERDT 393
Query: 209 TTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGS--NRLVEGTDVRLYCKAEANPSH 266
+T N + + + L+V P++ + S + GT L C A P
Sbjct: 394 GNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPP 453
Query: 267 MKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCK 326
WY + A + + +TN +
Sbjct: 454 HHIHWYWQLEEECANEPSQAVSVTN--------------------------PYPCEEWRS 487
Query: 327 AEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLD 386
E K N + + T L ++ KCE N VG+ E +
Sbjct: 488 VEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAA-NVSALYKCEAVNKVGRGERVISFH 546
Query: 387 VTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSD 446
VT GP +P +Q V+L C D + +TW + + L + +
Sbjct: 547 VTRGPEITLQP-DMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKN 605
Query: 447 DLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEK 506
AT++ I+ + D C A
Sbjct: 606 L-------------DTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLA-------- 644
Query: 507 VTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVT----YGPRFRARPYSVQVDRGAGV 562
+ K +T P + G +
Sbjct: 645 --------------------QDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESI 684
Query: 563 NLLCDVDGNPAPEITW------IHEDSDKVVGNSPN-LTLLMTSDDLAGRYYCKAS-VMG 614
+ C GNP P+I W + EDS V+ + LT+ + G Y C+A V+G
Sbjct: 685 EVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLG 744
Query: 615 FPEVGAEATVYLKGRPTIIS-HRTQ 638
EA ++G + RT
Sbjct: 745 --CAKVEAFFIIEGAQEKTNLERTH 767
Score = 153 bits (387), Expect = 2e-38
Identities = 65/517 (12%), Positives = 136/517 (26%), Gaps = 106/517 (20%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASA-----------TELYLTNITRHQHD 365
T +++ C+ + + W + + L +
Sbjct: 45 ANTTLQITCRGQRDLD-----WLWPNNQSGSEQRVEVTECSDGLFCKTLTIPK-VIGNDT 98
Query: 366 SIVKCEVHNDVGKSEDSETLDVTYGPR-----FRARPYSVQVDRGAGVNLLCDVDGNPAP 420
KC S + P + + ++ V + C +
Sbjct: 99 GAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLN 158
Query: 421 --------EITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVM-GFPEVGAEATVY 471
E ++ + + + T+ AG +C+A + + V
Sbjct: 159 VSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVV 218
Query: 472 LKGRP---TIISHRTQFGIPGDTARVECSAFSIPPPE-KVTWSYRGEEIG---------- 517
+ R + G+ + C+A + W Y +
Sbjct: 219 VGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLK 278
Query: 518 ------------------VGSSD--DYS--VHNDVGKSEDSETLDVTYGPRFR---ARPY 552
V SD Y+ + + ++S + V P
Sbjct: 279 TQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMES 338
Query: 553 SVQVDRGAGVNLLCDVDGNPAPEITWIHE----DSDKVVGNSPNLTLLMTSDDLAGRYYC 608
V+ G V + G P PEI W +S+ + LT++ S+ G Y
Sbjct: 339 LVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGNYTV 398
Query: 609 KAS-VMGFPEVGAEATVYLKGRPTIISHRTQFGI----PGDTARVECSAFSIPPPEKVTW 663
+ + + ++ + P I + G T + C+ ++IPPP + W
Sbjct: 399 ILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHW 458
Query: 664 SYRGEEIGVGSSDDYSVLEDP---------------------------LKEGIKSTLIIR 696
++ EE + +P ++ K+ +
Sbjct: 459 YWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLV 518
Query: 697 ESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFPLLL 733
+ +Y C N G I + + L
Sbjct: 519 IQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITL 555
Score = 127 bits (321), Expect = 3e-30
Identities = 79/503 (15%), Positives = 136/503 (27%), Gaps = 116/503 (23%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGSD 85
+ A VG RV +P + G ++W K+ L + +
Sbjct: 333 GSGMESLVEATVGERVRIPAKY---LGYPPPEIKWYKNGIPLESNHTI------------ 377
Query: 86 EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD-PPRIVQGDTLY 144
+ + L I V D Y + T + + +S +L V VPP + +
Sbjct: 378 -KAGHVLTIMEVSERDTGNYTVIL-TNPISK-EKQSHVVSLVVYVPPQIGEKSLISPVDS 434
Query: 145 TTEDREIELECISANGKP-PAEITWIDGTGTVMSNVRVTEEASVDGRRTTV--------- 194
L C + P P I W +N + +
Sbjct: 435 YQYGTTQTLTC-TVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQG 493
Query: 195 ------------------KSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAP 236
K+ L + + + + C+A N R +V V P
Sbjct: 494 GNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFH--VTRGP 551
Query: 237 KVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQ 296
++++ + E V L+C A+ + WY
Sbjct: 552 --EITLQPDMQPTEQESVSLWCTADRSTF-ENLTWYKLGPQPLPIHVGELPTPVCKNLD- 607
Query: 297 HDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT-ELY 355
W +N + + +
Sbjct: 608 ---------------------------------------TLWKLNATMFSNSTNDILIME 628
Query: 356 LTNITRHQHDS-IVKCEVHNDVGKSEDSETLDVT----YGPRFRARPYSVQVDRGAGVNL 410
L N + D C + K +T P + G + +
Sbjct: 629 LKNASLQ--DQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEV 686
Query: 411 LCDVDGNPAPEITW------IHEDSDKVVGNSPN-LTLLMTSDDLAGRYYCKAS-VMGFP 462
C GNP P+I W + EDS V+ + LT+ + G Y C+A V+G
Sbjct: 687 SCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLG-- 744
Query: 463 EVGAEATVYLKGRPTIIS-HRTQ 484
EA ++G + RT
Sbjct: 745 CAKVEAFFIIEGAQEKTNLERTH 767
Score = 126 bits (316), Expect = 9e-30
Identities = 54/419 (12%), Positives = 101/419 (24%), Gaps = 80/419 (19%)
Query: 369 KCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH-- 426
C S +LD+ PR + + + + + C G + W +
Sbjct: 13 LCVETRAASVGLPSVSLDL---PRLSIQKDILTIKANTTLQITCR--GQRDLDWLWPNNQ 67
Query: 427 ---EDSDKVVGNSPN-----LTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVY----LK 473
E +V S LT+ + G Y C + Y +
Sbjct: 68 SGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIA 127
Query: 474 GRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEI----------------- 516
T + C + Y +
Sbjct: 128 SVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTI 187
Query: 517 -GVGSSD--DYS--VHNDVGKSEDSETLDVTYGPRFRAR----PYSVQVDRGAGVNLLCD 567
S + + + V G R + +++ G + L C
Sbjct: 188 PSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCT 247
Query: 568 VDGNPAPEITW-------------------IHEDSDKVVGNSPNLTLLMTSDDLAGRYYC 608
I + + ++ LT+ + G Y C
Sbjct: 248 ARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTC 307
Query: 609 KAS-VMGFPEVGAEATVYLKGRPTIISH--RTQFGIPGDTARVECSAFSIPPPEKVTWSY 665
AS + + V+ K S G+ R+ PPPE + W
Sbjct: 308 AASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPE-IKWYK 366
Query: 666 RGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
G + ++++ L I E G Y ++NP + ++
Sbjct: 367 NGIPL----ESNHTIKAG-------HVLTIMEVSERDTGNYTVILTNPISKEKQSHVVS 414
Score = 64.4 bits (156), Expect = 1e-10
Identities = 26/211 (12%), Positives = 59/211 (27%), Gaps = 24/211 (11%)
Query: 603 AGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGI-PGDTARVECSAFSIPPPEKV 661
+ C + P + + I T ++ C
Sbjct: 9 VALWLCVETR----AASVGLPSVSLDLPRLSIQKDILTIKANTTLQITCRGQ--RDL--- 59
Query: 662 TWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEI 721
W + + G + + D TL I + + G Y C + + +
Sbjct: 60 DWLWPNNQSGSEQRVEVTECSD---GLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYV 116
Query: 722 MLKPQKSFPLLLILTGVIGCVVILVALTMVVILCQRKVKKPPPGNGIEHHVTADGEKNQC 781
++ +S + + + VVI C +V+ +
Sbjct: 117 YVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCL--GSISNL------NVSLCARYPEK 168
Query: 782 KESDNSSNISDIKLEFRTGSSVSNVHLDYAG 812
+ + + IS + + G ++ + + YAG
Sbjct: 169 RFVPDGNRIS---WDSKKGFTIPSYMISYAG 196
Score = 61.3 bits (148), Expect = 1e-09
Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 15/117 (12%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVI-DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEE 87
++QT +G + + C + + W KD+ L + ++
Sbjct: 668 TITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDN------ETLVEDSGIVL----KD 717
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLY 144
G+ +L I V +D+ Y CQ + LG A + + + + +
Sbjct: 718 GNRNLTIRRVRKEDEGLYTCQACSV-LGC---AKVEAFFIIEGAQEKTNLERTHHHH 770
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 190 bits (483), Expect = 7e-54
Identities = 68/320 (21%), Positives = 112/320 (35%), Gaps = 32/320 (10%)
Query: 16 ALSMGSLAQYREQKFAMEPQDQTAVVGSRVTLPCRVI-----DKTGVLQWTKDDF----- 65
+++ G + +G+ V L C K + W K
Sbjct: 3 SMTGGQQMGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQN 62
Query: 66 ------ALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAI 119
++G +R + D ++ + + L+D+ Y C+ +T G
Sbjct: 63 VAIYNPSMGVSVLAPYRERVEFLR-PSFTDGTIRLSRLELEDEGVYICEFATFPTGN--- 118
Query: 120 RSRFATLTVLVPPDPPRIVQGDTL---YTTEDREIELECISANGKPPAEITWIDGTGTVM 176
R LTV+ P L +D+ + C SANGKPP+ ++W
Sbjct: 119 RESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEA 178
Query: 177 SNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAP 236
+E TV S L P +E H + C DR + L V+Y P
Sbjct: 179 E----YQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLN--VQYEP 232
Query: 237 KVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATE--LYLTNITR 294
+V + N ++ DV+L CKA+ANP +Y W + +P A L+
Sbjct: 233 EVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPIN 292
Query: 295 HQHDSIVKCEVQVSVIGSNR 314
+ CE + IG+
Sbjct: 293 YSLAGTYICEAT-NPIGTRS 311
Score = 102 bits (254), Expect = 1e-23
Identities = 52/318 (16%), Positives = 98/318 (30%), Gaps = 55/318 (17%)
Query: 130 VPPDPPRIVQG-DTLYTTEDREIELECISANGKPPA---EITW-------IDGTGTVMSN 178
+ DP ++VQ D++Y ++ L C AN P ++TW +
Sbjct: 10 MGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPS 69
Query: 179 VRVTEEASVDGRRTTVKS-----TLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVK 233
+ V+ A R ++ T+ L+ + + C+ + ++L L V
Sbjct: 70 MGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRE-SQLNLTVM 128
Query: 234 YAPKVQVS----VIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT---- 285
P + V+ + + + + C + W +
Sbjct: 129 AKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNG 188
Query: 286 ------ELYLTNITRHQHDSIVKC---------------------EVQVSVIGSNRLVEG 318
L +R H + C EV + N ++
Sbjct: 189 TVTVISRYRLVP-SREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQR 247
Query: 319 TDVRLYCKAEANPSHMKYRWYINDQPVPAAASATE--LYLTNITRHQHDSIVKCEVHNDV 376
DV+L CKA+ANP +Y W + +P A L+ + CE N +
Sbjct: 248 MDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPI 307
Query: 377 GKSEDSETLDVTYGPRFR 394
G +++T
Sbjct: 308 GTRSGQVEVNITEAAALE 325
Score = 87.9 bits (217), Expect = 8e-19
Identities = 48/323 (14%), Positives = 85/323 (26%), Gaps = 73/323 (22%)
Query: 387 VTYGPRFRAR-PYSVQVDRGAGVNLLCDVDGNPAPE----ITWIHEDSDK---------- 431
+ P + S+ G V L C +TW +
Sbjct: 10 MGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPS 69
Query: 432 --------------VVGNSPN---LTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKG 474
+ S + L + G Y C+ + ++ + +
Sbjct: 70 MGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMA 129
Query: 475 RPTI------ISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYS--- 525
+PT R + G C++ + PP V+W R +
Sbjct: 130 KPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGT 189
Query: 526 -----------------------VHNDVGKSEDSETLDVTYGPRFRARPYSVQ-VDRGAG 561
V+ + + ++S TL+V Y P + +
Sbjct: 190 VTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMD 249
Query: 562 VNLLCDVDGNPAP-EITWIHED----SDKVVGNSPNLTLLMTSDDLAGRYYCKAS-VMGF 615
V L C D NP E W + N + LAG Y C+A+ +G
Sbjct: 250 VKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGT 309
Query: 616 PEVGAEATVYLKGRPTIISHRTQ 638
+ V + + H
Sbjct: 310 RS--GQVEVNITEAAALEHHHHH 330
Score = 84.0 bits (207), Expect = 2e-17
Identities = 32/193 (16%), Positives = 57/193 (29%), Gaps = 20/193 (10%)
Query: 309 VIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT----------ELYLTN 358
V+ + + + + C + W + L
Sbjct: 141 VLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVP 200
Query: 359 ITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQ-VDRGAGVNLLCDVDGN 417
+R H + C V+ + + ++S TL+V Y P + + V L C D N
Sbjct: 201 -SREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADAN 259
Query: 418 PAP-EITWIHED----SDKVVGNSPNLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVY 471
P E W + N + LAG Y C+A+ +G + V
Sbjct: 260 PPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGTRS--GQVEVN 317
Query: 472 LKGRPTIISHRTQ 484
+ + H
Sbjct: 318 ITEAAALEHHHHH 330
Score = 82.9 bits (204), Expect = 4e-17
Identities = 30/217 (13%), Positives = 59/217 (27%), Gaps = 35/217 (16%)
Query: 528 NDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAG-----VNLLCDV-DGNPAPEITWIHE 581
G E L V P + G + C +G P ++W
Sbjct: 114 FPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETR 173
Query: 582 DSDKVVGNSP-----------NLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYL--KG 628
+ L+ + + C + + + ++ L +
Sbjct: 174 LKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVN---YHMDRFKESLTLNVQY 230
Query: 629 RP--TIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLK 686
P TI + + ++ C A + PP + W+ + G L
Sbjct: 231 EPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTL----- 285
Query: 687 EGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723
+ G Y C +NP G+ S ++ +
Sbjct: 286 ------FFKGPINYSLAGTYICEATNPIGTRSGQVEV 316
Score = 78.3 bits (192), Expect = 1e-15
Identities = 38/314 (12%), Positives = 80/314 (25%), Gaps = 74/314 (23%)
Query: 305 VQVSVIGSNRLVEGTDVRLYCKAE---ANPSHMKYRWYINDQPVPAAASATE-------- 353
V V S GTDV L+C + + W + +
Sbjct: 16 QVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVL 75
Query: 354 ------------------LYLTNITRHQHDSIVKCEVHNDVGKSEDSE-TLDVTYGPRFR 394
+ L+ + + + + CE + +S+ L V P
Sbjct: 76 APYRERVEFLRPSFTDGTIRLSRLEL-EDEGVYICEFATFPTGNRESQLNLTVMAKPTNW 134
Query: 395 ARPYSVQVDRGAG-----VNLLCDV-DGNPAPEITWIHEDSDKVVGNSP----------- 437
+ G + C +G P ++W +
Sbjct: 135 IEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVIS 194
Query: 438 NLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYL--KGRP--TIISHRTQFGIPGDTAR 493
L+ + + C + + + ++ L + P TI + + +
Sbjct: 195 RYRLVPSREAHQQSLACIVN---YHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVK 251
Query: 494 VECSAFSIPPPEKVTWSYRGEEI---------------GVGSSDD--YS--VHNDVGKSE 534
+ C A + PP + W+ + + S Y N +G
Sbjct: 252 LTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGTRS 311
Query: 535 DSETLDVTYGPRFR 548
+++T
Sbjct: 312 GQVEVNITEAAALE 325
Score = 65.5 bits (159), Expect = 2e-11
Identities = 31/221 (14%), Positives = 59/221 (26%), Gaps = 42/221 (19%)
Query: 541 VTYGPRFRAR-PYSVQVDRGAGVNLLCDVDGNPAPE----ITWIHEDSDK---------- 585
+ P + S+ G V L C +TW +
Sbjct: 10 MGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPS 69
Query: 586 --------------VVGNSPN---LTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKG 628
+ S + L + G Y C+ + ++ + +
Sbjct: 70 MGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMA 129
Query: 629 RPTI------ISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLE 682
+PT R + G C++ + PP V+W R + G ++ +
Sbjct: 130 KPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLK----GEAEYQEIRN 185
Query: 683 DPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723
+ S + SR H C V+ + L
Sbjct: 186 PNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTL 226
Score = 40.1 bits (93), Expect = 0.003
Identities = 26/155 (16%), Positives = 46/155 (29%), Gaps = 23/155 (14%)
Query: 630 PTIISH-RTQFGIPGDTARVECSAFSIPPPEK---VTW---------------SYRGEEI 670
++ + +G G + CS + P K VTW G +
Sbjct: 15 SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSV 74
Query: 671 GVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSN-PYGSDSVEIMLKPQKSF 729
+ L +G T+ + + GVY C + P G+ ++ L
Sbjct: 75 LAPYRERVEFLRPSFTDG---TIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKP 131
Query: 730 PLLLILTGVIGCVVILVALTMVVILCQRKVKKPPP 764
+ T + ++V C KPP
Sbjct: 132 TNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPS 166
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 179 bits (455), Expect = 3e-48
Identities = 60/474 (12%), Positives = 124/474 (26%), Gaps = 76/474 (16%)
Query: 314 RLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT-------ELYLTNITRHQHDS 366
+ + L +A + + W + + + +T
Sbjct: 59 EVDVSASITLQVLVDAPGN-ISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMT-ETQAG 116
Query: 367 IVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH 426
+ ++ T+ + + R + L+C + P P + W+
Sbjct: 117 EYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDA-LVCISESVPEPIVEWVL 175
Query: 427 EDSDKVVGNSPN-----LTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISH 481
DS + + + C A E T+ L P +
Sbjct: 176 CDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQT-TL 234
Query: 482 RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVH-------------- 527
F G+ + C A + +TW + + G+ + S +
Sbjct: 235 PQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFV 294
Query: 528 ----------------NDVGKSEDSETLDVTYGPRFRA--RPYSVQVDRGAGVNLLCDVD 569
+S + + A ++D+
Sbjct: 295 SSVARNDTGYYTCSSSKHPSQSA---LVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFK 351
Query: 570 GNPAPEITWIHED-----SDKVVGNSPNLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEAT 623
P TW K + N +++ G Y A + T
Sbjct: 352 AYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDA--QFTKMFT 409
Query: 624 VYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRG-------EEIGVGSSD 676
+ ++ +P +++ ++ C + P P TW EEI G +
Sbjct: 410 LNIRRKPQVLAE-------ASASQASCFSDGYPLPS-WTWKKCSDKSPNCTEEITEGVWN 461
Query: 677 DYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFP 730
+ + + STL + E+ + C N G+ I+L FP
Sbjct: 462 RKANRKVFGQWVSSSTLNMSEAIKG--FLVKCCAYNSLGTSCETILLNSPGPFP 513
Score = 140 bits (353), Expect = 5e-35
Identities = 56/510 (10%), Positives = 130/510 (25%), Gaps = 81/510 (15%)
Query: 83 GSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDT 142
G+ + + +D + + + P L P + +
Sbjct: 3 GNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLG-----CALRPQSSGTVYEAAA 57
Query: 143 LYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTP 202
+ I L+ + W+ ++ + ++V+
Sbjct: 58 VEVDVSASITLQV-LVDAPGNISCLWVFKHSSLNCQPHFDLQNRGV-------VSMVILK 109
Query: 203 KKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEA 262
E + Q+ A + + + ++ R +E D L C +E+
Sbjct: 110 MTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYF---RKMENQDA-LVCISES 165
Query: 263 NPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDS---IVKCEVQVSV---------- 309
P W + D + + + + H+ ++C + +
Sbjct: 166 VPEP-IVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTI 224
Query: 310 ---------IGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNIT 360
+ L G + + CKA W + ++ + +
Sbjct: 225 DLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNR 284
Query: 361 RHQHDSIVK-------------CEVHNDVGKSEDSETLDVTYGPRFRA--RPYSVQVDRG 405
C + S + + A ++D+
Sbjct: 285 TMIRILFAFVSSVARNDTGYYTCSSSKHPSQ---SALVTIVEKGFINATNSSEDYEIDQY 341
Query: 406 AGVNLLCDVDGNPAPEITWIHED-----SDKVVGNSPNLTLLMTSDDLAGRYYCKAS-VM 459
P TW K + N +++ G Y A
Sbjct: 342 EEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDD 401
Query: 460 GFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRG------ 513
+ T+ ++ +P +++ ++ C + P P TW
Sbjct: 402 A--QFTKMFTLNIRRKPQVLAE-------ASASQASCFSDGYPLPS-WTWKKCSDKSPNC 451
Query: 514 -EEIGVGSSDDYSVHNDVGKSEDSETLDVT 542
EEI G + + G+ S TL+++
Sbjct: 452 TEEITEGVWNRKANRKVFGQWVSSSTLNMS 481
Score = 140 bits (353), Expect = 5e-35
Identities = 59/425 (13%), Positives = 115/425 (27%), Gaps = 85/425 (20%)
Query: 367 IVKCEVHNDVGKSEDSETLDVT------------YGPRFRARPYSVQVDRGAGVNLLCDV 414
++ +ND + S V+ +V+VD A + L V
Sbjct: 13 VLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLV 72
Query: 415 DGNPAPEITWIHEDS--------DKVVGNSPNLTLLMTSDDLAGRYYCKAS-VMGFPEVG 465
D W+ + S D ++ +L ++ AG Y
Sbjct: 73 DAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEAT--NYT 130
Query: 466 AEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSD--- 522
TV ++ R F + + C + S+P P V W + +
Sbjct: 131 ILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPEPI-VEWVLCDSQGESCKEESPA 189
Query: 523 ---------------DY--SVHNDVGKSE-DSETLDVTYGPRFRARPYSVQVDRGAGVNL 564
D N++G+ T+D+ P+ ++V G + +
Sbjct: 190 VVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKV--GEPLWI 247
Query: 565 LCDV-DGNPAPEITWIHED---------------SDKVVGNSPNLTLLMTSDDLAGRYYC 608
C N +TW E+ +++ + + + + G Y C
Sbjct: 248 RCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTC 307
Query: 609 KASVMGFPEVGAEATVYLKGRPTII---SHRTQFGIPGDTARVECSAFSIPPPEKVTWSY 665
+S A V + + I S + + P TW++
Sbjct: 308 SSSK----HPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIR-CTWTF 362
Query: 666 RGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML-- 723
+ + + ++ + G Y N + L
Sbjct: 363 SRKSF---PCEQKGLDNG-------YSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNI 412
Query: 724 --KPQ 726
KPQ
Sbjct: 413 RRKPQ 417
Score = 135 bits (342), Expect = 1e-33
Identities = 63/508 (12%), Positives = 120/508 (23%), Gaps = 99/508 (19%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDK-TGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEE 87
E V + +TL V W +L + +R +
Sbjct: 50 GTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVV------ 103
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTE 147
S+ I + Y + E + T+++ + +
Sbjct: 104 ---SMVILKMTETQAGEYLLFIQ----SEATNYTILFTVSI---RNTLLYTLRRPYFRKM 153
Query: 148 DREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHH 207
+ + L CI + P + W + E + K VL E
Sbjct: 154 ENQDALVCI-SESVPEPIVEW-------VLCDSQGESCKEESPAVVKKEEKVL---HELF 202
Query: 208 NTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHM 267
T C A+N + + P+ + L G + + CKA
Sbjct: 203 GTDIRCCARNEL-GRECTRLFTIDLNQTPQTTLP---QLFLKVGEPLWIRCKAVHVNHGF 258
Query: 268 KYRWYINDQPVPAAASATELYLTNITRHQHDSIVK-------------CEV--------- 305
W + ++ + + C
Sbjct: 259 GLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSAL 318
Query: 306 -------QVSVIGSNRLVE---GTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATEL- 354
++ S+ E + + +A P ++ W + + P +
Sbjct: 319 VTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYP-QIRCTWTFSRKSFPCEQKGLDNG 377
Query: 355 -YLTNITRHQHDS-IVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLC 412
++ H+H ND + TL++ P+ + + C
Sbjct: 378 YSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQV--------LAEASASQASC 429
Query: 413 DVDGNPAPEITWIHEDSDKVVGNSP--------------------NLTLLMTSDDLAGRY 452
DG P P TW + TL M+
Sbjct: 430 FSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLV 489
Query: 453 YCKAS-VMGFPEVGAEATVYLKGRPTII 479
C A +G + G I
Sbjct: 490 KCCAYNSLG--TSCETILLNSPGPFPFI 515
Score = 95.9 bits (238), Expect = 1e-20
Identities = 39/404 (9%), Positives = 105/404 (25%), Gaps = 59/404 (14%)
Query: 24 QYREQKFAMEPQDQTAVVGSRVTLPCRVI-DKTGVLQWTKDDFALGPHRNLSGFDRYAMI 82
R + + ++ L C +++W D +
Sbjct: 136 SIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCD------------SQGESC 183
Query: 83 GSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDT 142
+ E + +C LG +R T+ + P
Sbjct: 184 KEESPAVVKKEEKVLHELFGTDIRCCA-RNELGR--ECTRLFTIDLNQTP----QTTLPQ 236
Query: 143 LYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTP 202
L+ + + C + + +TW + R ++
Sbjct: 237 LFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSS 296
Query: 203 KKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLV-EGTDVRLYCKAE 261
+ +TC + ++ + + + + + + + + + +
Sbjct: 297 VARNDTGYYTCSSSKHPSQSA-----LVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFK 351
Query: 262 ANPSHMKYRWYINDQPVPAAASATE----LYLTNITRHQ----------HDSIVKCEVQV 307
A P ++ W + + P + + +HQ D+ +
Sbjct: 352 AYP-QIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTL 410
Query: 308 SVIGSNR-LVEGTDVRLYCKAEANP------SHMKYRWYINDQPVPAAASATELYLT--- 357
++ + L E + + C ++ P + + + +
Sbjct: 411 NIRRKPQVLAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFG 470
Query: 358 --------NITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRF 393
N++ +VKC +N +G S ++ L+ F
Sbjct: 471 QWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGPFPF 514
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 170 bits (431), Expect = 5e-46
Identities = 79/407 (19%), Positives = 125/407 (30%), Gaps = 69/407 (16%)
Query: 374 NDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGN-PAPEITW------IH 426
+++ S F + P RG V L C + + P I W +
Sbjct: 5 SELESSHHHHHHGGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILA 64
Query: 427 EDSDKVVGNSPNLTLLMTSDDL-------AGRYYCKASV-MGFPEVGAEATVYLKGRPTI 478
D PN +LL+ + G Y C+AS+ + A V + G
Sbjct: 65 LGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRF 124
Query: 479 ISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDD-------------- 523
+S + GDT ++C P P + W +++ D
Sbjct: 125 LSQTESITAFMGDTVLLKCEVIGDPMPT-IHWQKNQQDLNPIPGDSRVVVLPSGALQISR 183
Query: 524 --------YS--VHNDVGKSEDSE-TLDVTYGPR------FRARPYSVQVDRGAGVNLLC 566
Y N +E + + P F RP +V G L C
Sbjct: 184 LQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLEC 243
Query: 567 DVDGNPAPEITWIHED-------SDKVVGNSPNLTLLMTSDDLAGRYYCKAS-VMGFPEV 618
V G P P TW+ + + NL + +DD +G Y C + +
Sbjct: 244 CVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNE--NI 301
Query: 619 GAEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDD 677
A A + + P ++H + EC+ P P V W G+ + SD
Sbjct: 302 SASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVP-TVNWMKNGDVVI--PSDY 358
Query: 678 YSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
+ ++ S L I G Y C N G+ L
Sbjct: 359 FQIVGG-------SNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLI 398
Score = 153 bits (387), Expect = 3e-40
Identities = 80/354 (22%), Positives = 108/354 (30%), Gaps = 60/354 (16%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTN----ITRHQHDSIVK-- 369
+ G +V L C AE++ +W + + + L N I H K
Sbjct: 34 MRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPD 93
Query: 370 -----CEVHNDVGKSEDSET--LDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEI 422
CE S S T + V RF ++ S+ G V L C+V G+P P I
Sbjct: 94 EGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTI 153
Query: 423 TWIH---------EDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLK 473
W DS VV S L + +G Y C A G EA V +
Sbjct: 154 HWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRIL 213
Query: 474 GRPTIISH-------RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSV 526
P + I G A +EC PPP TW E I + S YS+
Sbjct: 214 SDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPS-FTWLRGEEVIQL-RSKKYSL 271
Query: 527 H-----------------------NDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVN 563
S L V P F P ++ +
Sbjct: 272 LGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIE 331
Query: 564 LLCDVDGNPAPEITW------IHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS 611
C V G P P + W + + NL +L G Y C A
Sbjct: 332 FECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAE 385
Score = 125 bits (316), Expect = 6e-31
Identities = 74/403 (18%), Positives = 128/403 (31%), Gaps = 68/403 (16%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRV--IDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDE 86
F EP D + G V L C V++W KD L L DR + +
Sbjct: 23 HFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLIL----ALGMDDRKQQLPNGS 78
Query: 87 EGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD---PPRIVQGDTL 143
++ D+ YQC+ S G G I SR A + V P +
Sbjct: 79 LLIQNILHSRHHKPDEGLYQCEASLGDSGS--IISRTAKVMVAGPLRFLSQTESIT---- 132
Query: 144 YTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRRTTVKS-TLVLT 201
+ L+C G P I W + + D R + S L ++
Sbjct: 133 -AFMGDTVLLKC-EVIGDPMPTIHWQKNQ--------QDLNPIPGDSRVVVLPSGALQIS 182
Query: 202 PKKEHHNTTFTCQAQNTA-DRTYKVARLKLLVK---YAPKVQVSVIGSNRLVEGTDVRLY 257
+ + + C A+N A RT A +++L + + + +EG D L
Sbjct: 183 RLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLE 242
Query: 258 CKAEANPSHMKYRWYINDQPVPAAA------SATELYLTNITRHQHDS------------ 299
C P + W ++ + + + L ++N+T DS
Sbjct: 243 CCVSGYP-PPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVT--DDDSGTYTCVVTYKNE 299
Query: 300 IVKCEVQVSV---------IGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA- 349
+ +++V + E D+ C P W N V +
Sbjct: 300 NISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVP-TVNWMKNGDVVIPSDY 358
Query: 350 ----SATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVT 388
+ L + + + + +C N+ G ++ S L V
Sbjct: 359 FQIVGGSNLRILGVVK-SDEGFYQCVAENEAGNAQSSAQLIVP 400
Score = 123 bits (309), Expect = 4e-30
Identities = 58/402 (14%), Positives = 109/402 (27%), Gaps = 66/402 (16%)
Query: 104 RYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQG-DTLYTTEDREIELECISANGKP 162
R+ ++ + V T + L C A
Sbjct: 2 RWGSELES--------SHHHHHHGGRRSL---HFVSEPSDAVTMRGGNVLLNCS-AESDR 49
Query: 163 PA-EITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADR 221
I W + + ++ +G + + ++ + + + C+A
Sbjct: 50 GVPVIKWKKDGLILALGMDDRKQQLPNG--SLLIQNILHSRHHKPDEGLYQCEASLGDSG 107
Query: 222 TYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAA 281
+ K++V + +S S G V L C+ +P W N Q +
Sbjct: 108 SIISRTAKVMVAGPLRF-LSQTESITAFMGDTVLLKCEVIGDPMP-TIHWQKNQQDLNPI 165
Query: 282 ASAT--------ELYLTNITRH-----------QHDSIVKCEVQVSVIGSNRL------- 315
+ L ++ + + E +V ++ L
Sbjct: 166 PGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFL 225
Query: 316 --------VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA------SATELYLTNITR 361
+EG D L C P + W ++ + + + L ++N+T
Sbjct: 226 QRPSNVIAIEGKDAVLECCVSGYP-PPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTD 284
Query: 362 HQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPE 421
C V S L V P F P ++ + C V G P P
Sbjct: 285 -DDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPT 343
Query: 422 ITW------IHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS 457
+ W + + NL +L G Y C A
Sbjct: 344 VNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAE 385
Score = 106 bits (266), Expect = 2e-24
Identities = 52/293 (17%), Positives = 89/293 (30%), Gaps = 56/293 (19%)
Query: 522 DDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGN-PAPEITW-- 578
D + +++ S F + P RG V L C + + P I W
Sbjct: 1 DRWG--SELESSHHHHHHGGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKK 58
Query: 579 ----IHEDSDKVVGNSPNLTLLMTSDDL-------AGRYYCKASV-MGFPEVGAEATVYL 626
+ D PN +LL+ + G Y C+AS+ + A V +
Sbjct: 59 DGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMV 118
Query: 627 KGRPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDD-YSVLEDP 684
G +S + GDT ++C P P + W +++ D VL
Sbjct: 119 AGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPT-IHWQKNQQDLNPIPGDSRVVVLPS- 176
Query: 685 LKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDS-----VEIMLKPQKSFPLLLI----- 734
L I + GVY CS NP + + V I+ P L +
Sbjct: 177 ------GALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSN 230
Query: 735 LTGVIGCVVILVALTMVVILCQ-----------RKVKKPPPGNGIEHHVTADG 776
+ + G V+ C + ++ ++ +
Sbjct: 231 VIAIEG--------KDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGS 275
Score = 88.4 bits (219), Expect = 1e-18
Identities = 49/210 (23%), Positives = 77/210 (36%), Gaps = 35/210 (16%)
Query: 25 YREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYA 80
+R+ F P + A+ G L C V +G W + + + +Y+
Sbjct: 219 HRQLYFLQRPSNVIAIEGKDAVLECCV---SGYPPPSFTWLRGEEVIQLRS-----KKYS 270
Query: 81 MIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQG 140
++ G +L I V DD Y C V+ S A LTVLV PP +
Sbjct: 271 LL-----GGSNLLISNVTDDDSGTYTCVVTY-KNEN---ISASAELTVLV---PPWFLNH 318
Query: 141 -DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLV 199
LY E +IE EC + +GKP + W+ V+ + + S L
Sbjct: 319 PSNLYAYESMDIEFEC-AVSGKPVPTVNWMKNGDVVIPSDYF---------QIVGGSNLR 368
Query: 200 LTPKKEHHNTTFTCQAQNTADRTYKVARLK 229
+ + + C A+N A A+L
Sbjct: 369 ILGVVKSDEGFYQCVAENEAGNAQSSAQLI 398
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 164 bits (417), Expect = 3e-43
Identities = 63/474 (13%), Positives = 119/474 (25%), Gaps = 84/474 (17%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDV 376
G ++RL C W E + C + +
Sbjct: 50 VGDEIRLLCTDPGFVK-----WTFEILDETNENKQNEWITEKAEA-TNTGKYTCTNKHGL 103
Query: 377 GKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGN- 435
S + V + S+ + C + + + +
Sbjct: 104 SNSI---YVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDL 160
Query: 436 ----SPNLTLLMTS---DDLAGRYYCKASVMGFPEVGAEATVYLKGRPTI-----ISHRT 483
P +++ S +C G + + + ++ +S +
Sbjct: 161 RFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKAS 220
Query: 484 QFGIPGDTARVECSAFSIPPPEKVTWSYRGEEI-------------------------GV 518
G+ V C+ + TW +
Sbjct: 221 YLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSA 280
Query: 519 GSSD--DYS--VHNDVGKSEDSETLDVTYGPRFRARP---YSVQVDRGAGVNLLCDVDGN 571
+D + +N G + + TL+V P +V V+ G V+L+ + +
Sbjct: 281 RVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAF 340
Query: 572 PAPE-ITWIHE--------------DSDKVVGNSPNLTLLMTSDDLAGRYYCKAS-VMGF 615
P PE WI+ +++ + L L G Y S
Sbjct: 341 PKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDV- 399
Query: 616 PEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSS 675
VY+ +P I+++ ++C A P P + W + S+
Sbjct: 400 -NAAIAFNVYVNTKPEILTYDR-----LVNGMLQCVAAGFPEPT-IDWYFCPGTEQRCSA 452
Query: 676 DDYSVLEDPLKEG------IKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723
V L + I S H G C N G S
Sbjct: 453 SVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNF 506
Score = 152 bits (385), Expect = 4e-39
Identities = 66/406 (16%), Positives = 112/406 (27%), Gaps = 60/406 (14%)
Query: 367 IVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH 426
++ + G S+ S + P + V G + LLC G + W
Sbjct: 13 VLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPG----FVKWTF 68
Query: 427 EDSDKVV-GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISH-RTQ 484
E D+ G+Y C + V+++ + R+
Sbjct: 69 EILDETNENKQNEWITEKAEATNTGKYTCTNK----HGLSNSIYVFVRDPAKLFLVDRSL 124
Query: 485 FGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDV-------------- 530
+G + V C + P + + +
Sbjct: 125 YGKEDNDTLVRCPL-TDPEV-TNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRL 182
Query: 531 ---------GKSEDSETLDVTYGPRFRARPY------SVQVDRGAGVNLLCDVDGNPAP- 574
GKS SE + P F+A P S + G + C + +
Sbjct: 183 CLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSV 242
Query: 575 EITWIHEDSDKVVGNSPNLTLLMTSDDL--------------AGRYYCKAS-VMGFPEVG 619
TW E+S + N + +G + C A+ G V
Sbjct: 243 YSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVT 302
Query: 620 AEATVYLKGRPTIIS--HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDD 677
V KG I + T F G+ + + P PE W Y +D
Sbjct: 303 TTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTF-TDKWED 361
Query: 678 YSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723
Y E+ S L + + G Y VSN + ++ +
Sbjct: 362 YPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNV 407
Score = 140 bits (354), Expect = 3e-35
Identities = 70/522 (13%), Positives = 129/522 (24%), Gaps = 119/522 (22%)
Query: 33 EPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSL 92
D VG + L C G ++WT + ++E
Sbjct: 42 GKSDLIVRVGDEIRLLCTD---PGFVKWTFEILDE----------------TNENKQNEW 82
Query: 93 EIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIE 152
+ +Y C G S + V P + +LY ED +
Sbjct: 83 ITEKAEATNTGKYTCTNKHG-------LSNSIYVFVRDPAKLF--LVDRSLYGKEDNDTL 133
Query: 153 LECISANGKPPAEITWIDGTGT-VMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTF 211
+ C + G + ++R D + ++ + K+ +H
Sbjct: 134 VRC-PLTDPEVTNYSLKGCQGKPLPKDLRFI----PDPKAGI----MIKSVKRAYHRLCL 184
Query: 212 TCQAQNTADRTYKVARLKLLVKYAPK---VQVSVIGSNRLVEGTDVRLYCKAEANPSHMK 268
C ++ + L V+ A K V S L EG + + C + S +
Sbjct: 185 HCSVDQ-EGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVY 243
Query: 269 YRWYINDQPVPAAASATELYLTNITR-----------HQHDS------------IVKCEV 305
W + + + +DS
Sbjct: 244 STWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTT 303
Query: 306 QVSVI------------GSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATE 353
+ V+ + + +G +V L + EA P +W ++
Sbjct: 304 TLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYP 363
Query: 354 LYLTNITRHQHDSIV------------KCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQ 401
+ V N + + + V P +
Sbjct: 364 KSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEI------LT 417
Query: 402 VDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPN---------------------LT 440
DR L C G P P I W + ++ +
Sbjct: 418 YDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSS 477
Query: 441 LLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISH 481
+ ++ G CKA +G + A KG H
Sbjct: 478 IDSSAFKHNGTVECKAYNDVG--KTSAYFNFAFKGNNKEQIH 517
Score = 117 bits (293), Expect = 2e-27
Identities = 43/312 (13%), Positives = 95/312 (30%), Gaps = 36/312 (11%)
Query: 443 MTSDDLAGRYYCKASVMGFPEVG---AEATVYLKGRPTIISHRTQFGI-PGDTARVECSA 498
M A + C ++ + G + P+I ++ + GD R+ C+
Sbjct: 1 MRGARGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTD 60
Query: 499 FSIPPPEKVTWSYRGEEIGVGSSDD----YSVH-NDVGK--------SEDSETLDVTYGP 545
P V W++ + + + + GK +S + V
Sbjct: 61 -----PGFVKWTFEILDETNENKQNEWITEKAEATNTGKYTCTNKHGLSNSIYVFVRDPA 115
Query: 546 RFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGN-----SPNLTLLMTS- 599
+ S+ + C + + + + P +++ S
Sbjct: 116 KLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSV 175
Query: 600 --DDLAGRYYCKASVMGFPEVGAEATVYLKGRPTI-----ISHRTQFGIPGDTARVECSA 652
+C G + + + ++ +S + G+ V C+
Sbjct: 176 KRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTI 235
Query: 653 FSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSN 712
+ TW + + + D E ++TL I +R + GV+ C +N
Sbjct: 236 KDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYE-RQATLTISSARVNDSGVFMCYANN 294
Query: 713 PYGSDSVEIMLK 724
+GS +V L+
Sbjct: 295 TFGSANVTTTLE 306
Score = 107 bits (267), Expect = 3e-24
Identities = 53/373 (14%), Positives = 96/373 (25%), Gaps = 71/373 (19%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRV--IDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDE 86
++ G T+ C + + + W +++ + + +
Sbjct: 213 VVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHG---DFNY 269
Query: 87 EGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYT- 145
E +L I ++D + C + + TL V+ +T
Sbjct: 270 ERQATLTISSARVNDSGVFMCYANNTF----GSANVTTTLEVVDKGFINIFPMINTTVFV 325
Query: 146 TEDREIELECISANGKP-PAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKK 204
+ ++L P P WI T + S + S L LT K
Sbjct: 326 NDGENVDLIV-EYEAFPKPEHQQWIYMNRTFTDKWEDYPK-SENESNIRYVSELHLTRLK 383
Query: 205 EHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANP 264
T+T N+ + V P++ N L C A P
Sbjct: 384 GTEGGTYTFLVSNSDVNAAIAFNVY--VNTKPEILTYDRLVN-------GMLQCVAAGFP 434
Query: 265 SHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLY 324
WY Q S V V + S+ G V
Sbjct: 435 EP-TIDWYFCPGT-----------------EQRCSASVLPVDVQTLNSSGPPFGKLV--- 473
Query: 325 CKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSET 384
+ + + +H+ V+C+ +NDVGK+
Sbjct: 474 ---------------------------VQSSIDSSAF-KHNGTVECKAYNDVGKTSAYFN 505
Query: 385 LDVTYGPRFRARP 397
+ + P
Sbjct: 506 FAFKGNNKEQIHP 518
Score = 50.8 bits (121), Expect = 2e-06
Identities = 22/153 (14%), Positives = 48/153 (31%), Gaps = 23/153 (15%)
Query: 597 MTSDDLAGRYYCKASVMGFPEVG---AEATVYLKGRPTIISHRTQFGI-PGDTARVECSA 652
M A + C ++ + G + P+I ++ + GD R+ C+
Sbjct: 1 MRGARGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTD 60
Query: 653 FSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSN 712
P V W++ + + + I ++ + G Y C+ +
Sbjct: 61 -----PGFVKWTFEILDETNENKQ--------------NEWITEKAEATNTGKYTCTNKH 101
Query: 713 PYGSDSVEIMLKPQKSFPLLLILTGVIGCVVIL 745
+ + P K F + L G ++
Sbjct: 102 GLSNSIYVFVRDPAKLFLVDRSLYGKEDNDTLV 134
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 155 bits (393), Expect = 4e-43
Identities = 52/222 (23%), Positives = 80/222 (36%), Gaps = 24/222 (10%)
Query: 34 PQDQTAVVGSRVTLPCRV------IDKTGVLQWTKDD-------FALGPHRNLSGFDRYA 80
P +G VTLPC + + L W + F + S R
Sbjct: 6 PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLE 65
Query: 81 MIGSD---EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRI 137
+ + E D SL ++ + ++D+ Y C T G RS L VL P
Sbjct: 66 FVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQG---SRSVDIWLRVLAKPQNTAE 122
Query: 138 VQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKST 197
VQ L T + C+S G+PPA+ITW G + +V TV S
Sbjct: 123 VQKVQL--TGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGF---LSGTVTVTSL 177
Query: 198 LVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQ 239
+L P + TC+ ++ + ++ + L V Y
Sbjct: 178 WILVPSSQVDGKQVTCKVEHESFEKPQLLTVSLTVYYPHHHH 219
Score = 53.5 bits (128), Expect = 6e-08
Identities = 23/196 (11%), Positives = 43/196 (21%), Gaps = 36/196 (18%)
Query: 551 PYSVQVDRGAGVNLLCDVDGNPAP-----EITWIHEDSDKVV------------------ 587
P V G V L C + ++TW +
Sbjct: 6 PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLE 65
Query: 588 ---------GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQ 638
+L + + G Y C + + + +P + +
Sbjct: 66 FVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQK 125
Query: 639 F-GIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRE 697
C + PP ++TW + + S I+
Sbjct: 126 VQLTGEPVPMARCVSTGGRPPAQITWHSDLGGM---PQTSQVPGFLSGTVTVTSLWILVP 182
Query: 698 SRHDHFGVYNCSVSNP 713
S C V +
Sbjct: 183 SSQVDGKQVTCKVEHE 198
Score = 38.1 bits (88), Expect = 0.008
Identities = 20/194 (10%), Positives = 44/194 (22%), Gaps = 36/194 (18%)
Query: 397 PYSVQVDRGAGVNLLCDVDGNPAP-----EITWIHEDSDKVV------------------ 433
P V G V L C + ++TW +
Sbjct: 6 PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLE 65
Query: 434 ---------GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQ 484
+L + + G Y C + + + +P + +
Sbjct: 66 FVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQK 125
Query: 485 F-GIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTY 543
C + PP ++TW + G + +
Sbjct: 126 VQLTGEPVPMARCVSTGGRPPAQITWHSDLGGM---PQTSQVPGFLSGTVTVTSLWILVP 182
Query: 544 GPRFRARPYSVQVD 557
+ + + +V+
Sbjct: 183 SSQVDGKQVTCKVE 196
Score = 29.7 bits (66), Expect = 4.7
Identities = 11/93 (11%), Positives = 26/93 (27%), Gaps = 12/93 (12%)
Query: 311 GSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATE----------LYLTNIT 360
+L C + + W+ + +P + L++ +
Sbjct: 124 QKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVTSLWILVPS 183
Query: 361 RHQHDSIVKCEVHNDVGKSEDSE--TLDVTYGP 391
V C+V ++ + +L V Y
Sbjct: 184 SQVDGKQVTCKVEHESFEKPQLLTVSLTVYYPH 216
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 153 bits (387), Expect = 3e-40
Identities = 80/410 (19%), Positives = 128/410 (31%), Gaps = 78/410 (19%)
Query: 379 SEDSETLDVTYGPRFRARPYSVQ-VDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSP 437
+ S ++T P + VD + + C+ GNPAP W + P
Sbjct: 5 MDPSIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDP 64
Query: 438 NLTLLMTSDDL-------------AGRYYCKASVMGFPEVGA----EATVYLKGRPTIIS 480
+++ S L G Y C A + G + + P
Sbjct: 65 RVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARN----KFGTALSNRIRLQVSKSPLWPK 120
Query: 481 H--RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEI------------------GVGS 520
G ++C+ P + W E V
Sbjct: 121 ENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVML 180
Query: 521 SDD---YS--VHNDVG---KSEDSETLDVT-------YGPRF---RARPYSVQVDRGAGV 562
D YS + ++ TL V P F + S V RG +
Sbjct: 181 QDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDL 240
Query: 563 NLLCDVDGNPAPEITWIHEDSD------KVVGNSPNLTLLMTSDDLAGRYYCKAS-VMGF 615
L C G P P+I W + D K + L + S++ +G Y+C AS MG
Sbjct: 241 LLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMG- 299
Query: 616 PEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGS 674
+ +V +K P + + PG+ R+ C A P P V W GE +
Sbjct: 300 -SIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKP-TVQWMVNGEPLQSAP 357
Query: 675 SDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
+ + T+I R+++ VY C+ SN +G +
Sbjct: 358 PNPNREVAG-------DTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVS 400
Score = 136 bits (344), Expect = 1e-34
Identities = 64/360 (17%), Positives = 120/360 (33%), Gaps = 68/360 (18%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT--------ELYLTNITRHQHDSIV 368
++ + C+A+ NP+ + W N + A L + + + +
Sbjct: 31 PRDNILIECEAKGNPA-PSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYE 89
Query: 369 ---KCEVHNDVGKSEDSE-TLDVTYGPRFRARPYS-VQVDRGAGVNLLCDV-DGNPAPEI 422
+C N G + + L V+ P + V V GA + L C+ G P+P I
Sbjct: 90 GEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVI 149
Query: 423 TWIHEDSDKVVGNS-----PNLTLLMTS---DDLAGRYYCKAS--VMGFPEVGAEATVYL 472
W+ + + + N L ++ D+ Y C A + T+ +
Sbjct: 150 FWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKV 209
Query: 473 KGRPTIISHRTQFGIP-----------GDTARVECSAFSIPPPEKVTWSYRGEEI----- 516
+ F P G +EC A +P P+ + W +G ++
Sbjct: 210 LTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPD-IAWYKKGGDLPSDKA 268
Query: 517 ------------GVGSSD--DYS--VHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGA 560
V D +Y N +G + ++ V P + P ++ + G
Sbjct: 269 KFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGE 328
Query: 561 GVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDL---------AGRYYCKAS 611
L+C +GNP P + W+ + + + PN + D + Y C S
Sbjct: 329 DGRLVCRANGNPKPTVQWMV-NGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTS 387
Score = 125 bits (316), Expect = 6e-31
Identities = 74/446 (16%), Positives = 133/446 (29%), Gaps = 102/446 (22%)
Query: 33 EPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAMIGSDEEG 88
+D + + C G WT++ N++ R +M
Sbjct: 23 SAKDHIVDPRDNILIECEA---KGNPAPSFHWTRNSRFF----NIAKDPRVSMRRRSGTL 75
Query: 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTED 148
+ + YQC G S L V P P+ D + E
Sbjct: 76 VIDFRSGGRPEEYEGEYQCFARN-KFGT--ALSNRIRLQVSKSPLWPKENL-DPVVVQEG 131
Query: 149 REIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTP-KKEH 206
+ L+C G P I W+ + + RV++ + L + +
Sbjct: 132 APLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHN---------GDLYFSNVMLQD 182
Query: 207 HNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSH 266
T ++C A+ T + + V+ + + E PS
Sbjct: 183 MQTDYSCNARFHFTHTIQ---------QKNPFTLKVLTTRGVAE-----------RTPSF 222
Query: 267 MKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCK 326
M + + Q V + G D+ L C
Sbjct: 223 MYPQGTASSQMV-------------------------------------LRGMDLLLECI 245
Query: 327 AEANPSHMKYRWYINDQPVPAAASATE-----LYLTNITRHQHDS-IVKCEVHNDVGKSE 380
A P+ WY +P+ + E L +TN++ + DS C N +G
Sbjct: 246 ASGVPTP-DIAWYKKGGDLPSDKAKFENFNKALRITNVS--EEDSGEYFCLASNKMGSIR 302
Query: 381 DSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLT 440
+ ++ V P + P ++ + G L+C +GNP P + W+ + + + PN
Sbjct: 303 HTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMV-NGEPLQSAPPNPN 361
Query: 441 LLMTSDDL---------AGRYYCKAS 457
+ D + Y C S
Sbjct: 362 REVAGDTIIFRDTQISSRAVYQCNTS 387
Score = 82.6 bits (204), Expect = 1e-16
Identities = 41/232 (17%), Positives = 66/232 (28%), Gaps = 36/232 (15%)
Query: 5 TRVQSALWVLLALSMGSLAQYREQ--KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----L 58
T Q + L L+ +A+ Q + G + L C +GV +
Sbjct: 198 TIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIA---SGVPTPDI 254
Query: 59 QWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPA 118
W K L + E + +L I V +D Y C S +G
Sbjct: 255 AWYKKGGDLPSDK-----------AKFENFNKALRITNVSEEDSGEYFCLASNK-MGS-- 300
Query: 119 IRSRFATLTVLVPPDPPRIVQG-DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMS 177
++ V P + L + L C ANG P + W M
Sbjct: 301 -IRHTISVRVKA---APYWLDEPKNLILAPGEDGRLVC-RANGNPKPTVQW-------MV 348
Query: 178 NVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLK 229
N + A + R T++ + + C N A +
Sbjct: 349 NGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVS 400
Score = 51.4 bits (123), Expect = 9e-07
Identities = 20/105 (19%), Positives = 32/105 (30%), Gaps = 20/105 (19%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
+ EP++ G L CR G +QW + L + +
Sbjct: 314 YWLDEPKNLILAPGEDGRLVCRA---NGNPKPTVQWMVNGEPLQSAPP----NPNREVAG 366
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVL 129
D ++ + A YQC S G A ++VL
Sbjct: 367 D-----TIIFRDTQISSRAVYQCNTSNEH-GY---LLANAFVSVL 402
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 151 bits (383), Expect = 7e-40
Identities = 69/393 (17%), Positives = 110/393 (27%), Gaps = 71/393 (18%)
Query: 388 TYGPRFRARPYSVQVDRGA---GVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMT 444
+YGP F +P G+ V L C NP W ++ + P+ +
Sbjct: 2 SYGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTE--LKMGPDSRYRLV 59
Query: 445 SDDL----------AGRYYCKASVMGFPEVGAEATVYLKGRPTIISH--RTQFGIPGDTA 492
+ DL AG Y C A+ V EA++ + G
Sbjct: 60 AGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGV 119
Query: 493 RVECSAFSIPPPEKVTWSYRGEEIGVGSSD----------------------DYS--VHN 528
CS P W + + +YS +
Sbjct: 120 MFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATS 179
Query: 529 DVGKSEDSETLDVTYG------------PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEI 576
+ S + P G V L C GNP P+I
Sbjct: 180 HIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQI 239
Query: 577 TWIHEDSD---KVVGNSPNLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTI 632
W D K + + P L + + G Y C+A + G + + + +P
Sbjct: 240 KWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKG--RDTYQGRIIIHAQPDW 297
Query: 633 ISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKS 691
+ G R C A P P V W G+ + +S + +
Sbjct: 298 LDVITDTEADIGSDLRWSCVASGKPRP-AVRWLRDGQPL---ASQNRIEVSG-------G 346
Query: 692 TLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
L + + G+Y C N +G+ L
Sbjct: 347 ELRFSKLVLEDSGMYQCVAENKHGTVYASAELT 379
Score = 136 bits (343), Expect = 9e-35
Identities = 64/348 (18%), Positives = 111/348 (31%), Gaps = 55/348 (15%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT------ELYLTNITRHQHDSIVKC 370
V L C+A ANP YRW +N + + +L ++N + + +C
Sbjct: 21 AEEKVTLTCRARANPP-ATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQC 79
Query: 371 EVHNDVGKSEDSE-TLDVTYGPRFRARPYS-VQVDRGAGVNLLCDV-DGNPAPEITWIHE 427
N G E +L + F A V++ G GV C PA W+
Sbjct: 80 VATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLN 139
Query: 428 DSDKVVGNSPNLTLLMTSDDL---------AGRYYCKAS----------VMGFPEVGAEA 468
+ + + T+ +L G Y C A+ F ++ A
Sbjct: 140 EFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAA 199
Query: 469 TVYLKGRPTIISHR--TQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEI---------- 516
+ P+I + + + G +EC AF P P+ + W
Sbjct: 200 EDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQ-IKWRKLDGSQTSKWLSSEPL 258
Query: 517 ----GVGSSD--DYS--VHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDV 568
V D Y N G+ + + P + + D G+ + C
Sbjct: 259 LHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVA 318
Query: 569 DGNPAPEITWIHE-----DSDKVVGNSPNLTLLMTSDDLAGRYYCKAS 611
G P P + W+ + +++ + L + +G Y C A
Sbjct: 319 SGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAE 366
Score = 120 bits (302), Expect = 2e-29
Identities = 79/405 (19%), Positives = 129/405 (31%), Gaps = 76/405 (18%)
Query: 29 KFAMEPQDQTAVVGS---RVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAM 81
F +P GS +VTL CR +W + L + RY +
Sbjct: 6 VFEEQPAHTLFPEGSAEEKVTLTCRA---RANPPATYRWKMNGTELKMGPD----SRYRL 58
Query: 82 IGSDEEGDYSLEIY-PVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQG 140
+ L I PV D YQC + G + SR A+L + +
Sbjct: 59 VAG------DLVISNPVKAKDAGSYQCVATNA-RGT--VVSREASLRFGFLQEFSAEER- 108
Query: 141 DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKS--TL 198
D + TE + C P W+ DGRR ++ L
Sbjct: 109 DPVKITEGWGVMFTCSPPPHYPALSYRWLLN--------EFPNFIPADGRRFVSQTTGNL 160
Query: 199 VLTPKKEHHNTTFTCQAQNTADRTYK-----VARLKLLVK----YAPKVQVSVIGSNRLV 249
+ + ++C A + D K ++L L + YAP ++ +
Sbjct: 161 YIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYAL 220
Query: 250 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATE--LYLTNITRHQHDS-------- 299
G V L C A NP + +W D + ++E L++ N+ D
Sbjct: 221 TGQMVTLECFAFGNPVP-QIKWRKLDGSQTSKWLSSEPLLHIQNVD--FEDEGTYECEAE 277
Query: 300 ----IVKCEVQVSV---------IGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVP 346
+ ++ + I G+D+R C A P RW + QP+
Sbjct: 278 NIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRP-AVRWLRDGQPLA 336
Query: 347 AAA----SATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDV 387
+ S EL + + + + +C N G S L V
Sbjct: 337 SQNRIEVSGGELRFSKLVL-EDSGMYQCVAENKHGTVYASAELTV 380
Score = 119 bits (299), Expect = 6e-29
Identities = 67/378 (17%), Positives = 121/378 (32%), Gaps = 69/378 (18%)
Query: 134 PPRIVQ--GDTLYT--TEDREIELECISANGKPPAEITWI-DGTG-TVMSNVRVTEEASV 187
P + TL+ + + ++ L C A PPA W +GT + + R V
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTC-RARANPPATYRWKMNGTELKMGPDSRYRL---V 59
Query: 188 DGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTY-KVARLKLLVKYAPKVQVSVIGSN 246
G ++ P K ++ C A N + A L+ + +
Sbjct: 60 AG------DLVISNPVKAKDAGSYQCVATNARGTVVSREASLR--FGFLQEFSAEERDPV 111
Query: 247 RLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT--------ELYLTNITR---- 294
++ EG V C + + YRW +N+ P A LY+
Sbjct: 112 KITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLG 171
Query: 295 -----------HQHDSIVKCEVQVSVIGSN----------------RLVEGTDVRLYCKA 327
S+ Q+S+ + + G V L C A
Sbjct: 172 NYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFA 231
Query: 328 EANPSHMKYRWYINDQPVPAAASATE--LYLTNITRHQHDS-IVKCEVHNDVGKSEDSET 384
NP + +W D + ++E L++ N+ D +CE N G+
Sbjct: 232 FGNPVP-QIKWRKLDGSQTSKWLSSEPLLHIQNVD--FEDEGTYECEAENIKGRDTYQGR 288
Query: 385 LDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHE-----DSDKVVGNSPNL 439
+ + P + + D G+ + C G P P + W+ + +++ + L
Sbjct: 289 IIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGEL 348
Query: 440 TLLMTSDDLAGRYYCKAS 457
+ +G Y C A
Sbjct: 349 RFSKLVLEDSGMYQCVAE 366
Score = 86.1 bits (213), Expect = 6e-18
Identities = 36/199 (18%), Positives = 58/199 (29%), Gaps = 23/199 (11%)
Query: 542 TYGPRFRARPYSVQVDRGA---GVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMT 598
+YGP F +P G+ V L C NP W ++ + P+ +
Sbjct: 2 SYGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTE--LKMGPDSRYRLV 59
Query: 599 SDDL----------AGRYYCKASVMGFPEVGAEATVYLKGRPTIISH--RTQFGIPGDTA 646
+ DL AG Y C A+ V EA++ + G
Sbjct: 60 AGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGV 119
Query: 647 RVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706
CS P W + + V G L I ++ G Y
Sbjct: 120 MFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVS---QTTG---NLYIAKTEASDLGNY 173
Query: 707 NCSVSNPYGSDSVEIMLKP 725
+C ++ + + K
Sbjct: 174 SCFATSHIDFITKSVFSKF 192
Score = 82.2 bits (203), Expect = 1e-16
Identities = 42/234 (17%), Positives = 72/234 (30%), Gaps = 40/234 (17%)
Query: 1 MREMTRVQSALWVLLALSMGSLAQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGV--- 57
+ +T+ + + L+L+ QY A P D A+ G VTL C G
Sbjct: 181 IDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFA---FGNPVP 237
Query: 58 -LQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGE 116
++W K D + S L I V +D+ Y+C+ G
Sbjct: 238 QIKWRKLDGSQTSKWLSSE--------------PLLHIQNVDFEDEGTYECEAENI-KGR 282
Query: 117 PAIRSRFATLTVLVPPDPPRIVQG-DTLYTTEDREIELECISANGKPPAEITWIDGTGTV 175
+ + + P + ++ C A+GKP + W+
Sbjct: 283 ---DTYQGRIIIHA---QPDWLDVITDTEADIGSDLRWSC-VASGKPRPAVRWL------ 329
Query: 176 MSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLK 229
R + + R L + + + C A+N Y A L
Sbjct: 330 ----RDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELT 379
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 151 bits (383), Expect = 1e-39
Identities = 54/421 (12%), Positives = 111/421 (26%), Gaps = 81/421 (19%)
Query: 367 IVKCEVHNDVGKSEDSETLDVT------------YGPRFRARPYSVQVDRGAGVNLLCDV 414
++ +ND + S V+ +V+VD A + L V
Sbjct: 13 VLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLV 72
Query: 415 DGNPAPEITW------IHEDSDKVVGNSPNLTLL---MTSDDLAGRYYCKAS-VMGFPEV 464
D W ++ + N ++++ MT AG Y
Sbjct: 73 DAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQ-AGEYLLFIQSEAT--NY 129
Query: 465 GAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDY 524
TV ++ R F + + C + S+P P V W + +
Sbjct: 130 TILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPEPI-VEWVLCDSQGESCKEESP 188
Query: 525 SVH--------------------NDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNL 564
+V N++G+ + + + + + G + +
Sbjct: 189 AVVKKEEKVLHELFGTDIRCCARNELGREC-TRLFTIDLNQTPQTTLPQLFLKVGEPLWI 247
Query: 565 LCD-VDGNPAPEITW------IHEDSDKVVGNSPNLTLLMTSDDL---------AGRYYC 608
C V N +TW + E + + ++ G Y C
Sbjct: 248 RCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTC 307
Query: 609 KASVMGFPEVGAEATVYLKGRPTII---SHRTQFGIPGDTARVECSAFSIPPPEKVTWSY 665
+S A V + + I S + + P + TW++
Sbjct: 308 SSSK----HPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQI-RCTWTF 362
Query: 666 RGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725
+ + L++ ++ + G Y N + L
Sbjct: 363 SRKSF----PCEQKGLDN------GYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNI 412
Query: 726 Q 726
+
Sbjct: 413 R 413
Score = 124 bits (311), Expect = 3e-30
Identities = 40/447 (8%), Positives = 97/447 (21%), Gaps = 76/447 (17%)
Query: 83 GSDEEGDYS-----LEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRI 137
G+ + + + + Y S L P +
Sbjct: 3 GNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSE----------SPEDLGCALRPQSSGTV 52
Query: 138 VQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKST 197
+ + I L+ + + W+ ++ + +
Sbjct: 53 YEAAAVEVDVSASITLQVL-VDAPGNISCLWVFKHSSLNCQPHFDLQNRGVV-------S 104
Query: 198 LVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLY 257
+V+ E + Q+ A + + ++ + L
Sbjct: 105 MVILKMTETQAGEYLLFIQSEATNYTILFTVS--IRNTLLYTLRR--PYFRKMENQDALV 160
Query: 258 CKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDS------------------ 299
C +E+ P W + D + + + + H+
Sbjct: 161 CISESVPEP-IVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECT 219
Query: 300 ----IVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELY 355
I + + + L G + + CKA W + ++ +
Sbjct: 220 RLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMST 279
Query: 356 LTNITRHQHDSIV-------------KCEVHNDVGKSEDSETLDVTYGPRFRARP--YSV 400
+ C + S + + A
Sbjct: 280 YSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ---SALVTIVEKGFINATNSSEDY 336
Query: 401 QVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVVGNSPNLTLLMTSDDLAGRYYCK 455
++D+ P TW K + N +++ G Y
Sbjct: 337 EIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFH 396
Query: 456 AS-VMGFPEVGAEATVYLKGRPTIISH 481
A + T+ ++ H
Sbjct: 397 AENDDA--QFTKMFTLNIRSGTKHHHH 421
Score = 115 bits (288), Expect = 3e-27
Identities = 41/407 (10%), Positives = 102/407 (25%), Gaps = 82/407 (20%)
Query: 209 TTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMK 268
+++ +++ D L + V + + + L +A ++
Sbjct: 28 SSYPMVSESPEDLGCA------LRPQSSGT-VYEAAAVEVDVSASITLQVLVDAPG-NIS 79
Query: 269 YRWYINDQPVPAAASA-------TELYLTNIT------------------RHQHDSIVKC 303
W + + + +T ++
Sbjct: 80 CLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRN 139
Query: 304 EVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQ 363
+ ++ L C +E+ P W + D + + + +
Sbjct: 140 TLLYTLRRPYFRKMENQDALVCISESVPEP-IVEWVLCDSQGESCKEESPAVVKKEEKVL 198
Query: 364 HDSIV---KCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCD-VDGNPA 419
H+ +C N++G+ + + + + + G + + C V N
Sbjct: 199 HELFGTDIRCCARNELGREC-TRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHG 257
Query: 420 PEITW------IHEDSDKVVGNSPNLTLLMTSDDL---------AGRYYCKASVMGFPEV 464
+TW + E + + ++ G Y C +S
Sbjct: 258 FGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSK----HP 313
Query: 465 GAEATVYLKGRPTII---SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEI----- 516
A V + + I S + + P + TW++ +
Sbjct: 314 SQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQI-RCTWTFSRKSFPCEQK 372
Query: 517 -----------GVGSSD--DYS--VHNDVGKSEDSETLDVTYGPRFR 548
+Y ND + TL++ G +
Sbjct: 373 GLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGTKHH 419
Score = 103 bits (257), Expect = 2e-23
Identities = 50/407 (12%), Positives = 99/407 (24%), Gaps = 78/407 (19%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
E V + +TL V W +L + +R
Sbjct: 50 GTVYEAAAVEVDVSASITLQVLV---DAPGNISCLWVFKHSSLNCQPHFDLQNRG----- 101
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLY 144
S+ I + Y + + + T+++ + +
Sbjct: 102 ----VVSMVILKMTETQAGEYLLFIQSE-ATN---YTILFTVSIR---NTLLYTLRRPYF 150
Query: 145 TTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKK 204
+ + L CI + P + W + E + K VL
Sbjct: 151 RKMENQDALVCI-SESVPEPIVEW-------VLCDSQGESCKEESPAVVKKEEKVL---H 199
Query: 205 EHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANP 264
E T C A+N R + Q + + L G + + CKA
Sbjct: 200 ELFGTDIRCCARNELGRECTRL---FTIDLNQTPQTT-LPQLFLKVGEPLWIRCKAVHVN 255
Query: 265 SHMKYRWYINDQPVPAAASAT-ELYLTNITRHQHDSIVKCEVQVS------VIGSNR--- 314
W + ++ + Y TN T + V + S
Sbjct: 256 HGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ 315
Query: 315 ----------------------LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT 352
+ + + + +A P ++ W + + P
Sbjct: 316 SALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQ-IRCTWTFSRKSFPCEQKGL 374
Query: 353 E----LYLTNITRHQHDS-IVKCEVHNDVGKSEDSETLDVTYGPRFR 394
+ + +H ND + TL++ G +
Sbjct: 375 DNGYSISKFCNH--KHQPGEYIFHAENDDAQFTKMFTLNIRSGTKHH 419
Score = 87.0 bits (215), Expect = 5e-18
Identities = 26/214 (12%), Positives = 53/214 (24%), Gaps = 24/214 (11%)
Query: 28 QKFAMEPQDQTAVVGSRVTLPCRVI--DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSD 85
Q VG + + C+ + + L W ++ AL
Sbjct: 228 QTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTY--STNRT 285
Query: 86 EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYT 145
+ V +D Y C S S+ A +T++ +
Sbjct: 286 MIRILFAFVSSVARNDTGYYTCSSSKHP-------SQSALVTIVEKGFINATNSSEDYEI 338
Query: 146 TEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKE 205
+ E P TW + + + ++ +
Sbjct: 339 DQYEEFCFSV-RFKAYPQIRCTWTFSRKSFPCEQKGLDN----------GYSISKFCNHK 387
Query: 206 HHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQ 239
H + A+N + K+ L ++ K
Sbjct: 388 HQPGEYIFHAENDDAQFTKMFTLN--IRSGTKHH 419
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 150 bits (379), Expect = 5e-39
Identities = 75/469 (15%), Positives = 139/469 (29%), Gaps = 82/469 (17%)
Query: 32 MEPQDQTAVVGSRVTLPCRVI-DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDY 90
+ P G V + C D+ +L P + L G+
Sbjct: 4 VSPSKVILPRGGSVLVTCSTSCDQPMLLGIETPL----PKKELL-----------LPGNN 48
Query: 91 SLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDRE 150
+ +D++ C + + LTV P+ + + +
Sbjct: 49 RKVYELSNVQEDSQPMCYSNCP----DGQSTAKTFLTVYWTPERVEL-APLPSWQPVGKN 103
Query: 151 IELECISANGKPPA--EITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHN 208
+ L C G P A + + G + V E A V T + +++HH
Sbjct: 104 LTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEV---------TTTVLVRRDHHG 154
Query: 209 TTFTCQAQNTADR------TYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEA 262
F+C+ + A +L P ++ L T + C +
Sbjct: 155 ANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDG 214
Query: 263 NP--SHMKYRWYINDQPVPAAASA------TELYLTNITRHQHDSIVKCEVQVS------ 308
S + + DQ + + + ++ + + C V +
Sbjct: 215 LFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQET 274
Query: 309 --------------VIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATEL 354
++ + EGT+V + C+A + P A +L
Sbjct: 275 LQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAK-VTLNGVPAQPLGPRA----QL 329
Query: 355 YLTNITRHQHDSIVKCEVHNDVG----KSEDSETLDVTYGPRFRAR--PYSVQVDRGAGV 408
L T + C +V + L V YGPR R P + +
Sbjct: 330 LL-KATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQ 388
Query: 409 NLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS 457
+C GNP PE+ + + + + P + + DL G Y C+A
Sbjct: 389 TPMCQAWGNPLPELKCLKDGTFPL----PIGESVTVTRDLEGTYLCRAR 433
Score = 142 bits (358), Expect = 3e-36
Identities = 66/471 (14%), Positives = 123/471 (26%), Gaps = 77/471 (16%)
Query: 306 QVSVIGSNRLV-EGTDVRLYCKAEAN-PSHMKYRWYINDQPVPAAASATELYLTNITRHQ 363
Q SV S ++ G V + C + P + + + + + ++Y ++ Q
Sbjct: 1 QTSVSPSKVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGNNRKVY--ELSNVQ 58
Query: 364 HDSIVKCEVHNDVGKSEDSETLDVTYGP-RFRARPYSVQVDRGAGVNLLCDVDG-NPAPE 421
DS C + G+S L V + P R P G + L C V+G P
Sbjct: 59 EDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRAN 118
Query: 422 ITW--------IHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVG-------- 465
+T + + T+L+ D + C+ + P+
Sbjct: 119 LTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSA 178
Query: 466 -AEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGE---------- 514
+ ++ + V CS + P +
Sbjct: 179 PYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTY 238
Query: 515 -----------EIGVGSSDDY----SVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRG 559
+ +V E +T+ + P +V G
Sbjct: 239 GNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEG 298
Query: 560 AGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASV-MGFPEV 618
V + C+ + + +G L L T +D + C A++ + +
Sbjct: 299 TEVTVKCEAHPRAKVTLNGVPAQP---LGPRAQLLLKATPEDNGRSFSCSATLEVAGQLI 355
Query: 619 GAEATVYL--KGRPTIISH---RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVG 673
T L P + C A+ P PE + G
Sbjct: 356 HKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPE-LKCLKDGTFPL-- 412
Query: 674 SSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
D G Y C + G + E+ +
Sbjct: 413 -----------------PIGESVTVTRDLEGTYLCRARSTQGEVTREVTVN 446
Score = 120 bits (302), Expect = 5e-29
Identities = 57/476 (11%), Positives = 126/476 (26%), Gaps = 88/476 (18%)
Query: 128 VLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASV 187
V P + +G ++ + C S + P + T + + +
Sbjct: 2 TSVSPSKVILPRGGSV--------LVTC-STSCDQPMLLGI----ETPLPKKELLLPGN- 47
Query: 188 DGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNR 247
+ V ++ C + + A+ L V + P+ +
Sbjct: 48 --------NRKVYELSNVQEDSQPMCYSNCPDGQ--STAKTFLTVYWTPERVELAPLPSW 97
Query: 248 LVEGTDVRLYCKAEAN--PSHMKYRWYINDQPVPAAASATE----LYLTNITRHQHDSIV 301
G ++ L C+ E +++ ++ + + E + R H +
Sbjct: 98 QPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANF 157
Query: 302 KCEVQVSV-----------------------------IGSNRLVEGTDVRLYCKAEANP- 331
C ++ + + L T + C +
Sbjct: 158 SCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFP 217
Query: 332 -SHMKYRWYINDQPVPAAASA------TELYLTNITRHQHDSIVKCEVHNDVGKSEDSET 384
S + + DQ + + + ++ + + C V E +T
Sbjct: 218 VSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQT 277
Query: 385 LDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMT 444
+ + P +V G V + C+ + + +G L L T
Sbjct: 278 VTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQP---LGPRAQLLLKAT 334
Query: 445 SDDLAGRYYCKASV-MGFPEVGAEATVYL--KGRPTIISH---RTQFGIPGDTARVECSA 498
+D + C A++ + + T L P + C A
Sbjct: 335 PEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQA 394
Query: 499 FSIPPPEKVTWSYRGEEIG-------VGSSDD--YS--VHNDVGKSEDSETLDVTY 543
+ P PE + G V + Y + G+ T++V
Sbjct: 395 WGNPLPE-LKCLKDGTFPLPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 449
Score = 111 bits (278), Expect = 6e-26
Identities = 57/396 (14%), Positives = 109/396 (27%), Gaps = 67/396 (16%)
Query: 28 QKFAMEPQDQTAVVGSRVTLPCRVID----KTGVLQWTKDDFALGPHRNLSGFDRYAMIG 83
++ + P VG +TL C+V + + + L R +G
Sbjct: 87 ERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKEL---------KREPAVG 137
Query: 84 SDEEGDYSLEIYPVMLDDDARYQCQVSTGI----LGEPAIRSRFATLTVLVPPDPPRIVQ 139
E + + A + C+ + L S L V P P +
Sbjct: 138 EPAEV--TTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLV 195
Query: 140 GDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLV 199
D + + C P +E G + R+ + + K+++
Sbjct: 196 SPR-VLEVDTQGTVVCSLDGLFPVSEAQVHLALG----DQRLNPTVTYGNDSFSAKASVS 250
Query: 200 LTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCK 259
+T ++ TC + + + AP V ++ + EGT+V + C+
Sbjct: 251 VTA-EDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILT---KPEVSEGTEVTVKCE 306
Query: 260 AEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNR----- 314
A + P A +L L T + C + V G
Sbjct: 307 AHPRAK-VTLNGVPAQPLGPRA----QLLL-KATPEDNGRSFSCSATLEVAGQLIHKNQT 360
Query: 315 ---------------------LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATE 353
E + C+A NP + + +
Sbjct: 361 RELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPL-PELKCLKDGTFPLPIGE--- 416
Query: 354 LYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTY 389
+TR + C + G+ T++V
Sbjct: 417 --SVTVTRD-LEGTYLCRARSTQGEVTREVTVNVLS 449
Score = 67.2 bits (163), Expect = 1e-11
Identities = 32/212 (15%), Positives = 56/212 (26%), Gaps = 45/212 (21%)
Query: 25 YREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGV-LQWTKDDFALGPHRNLSGFDRYAMIG 83
Y + G+ VT+ C + V L
Sbjct: 281 YSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPR-------------- 326
Query: 84 SDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTL 143
L + D+ + C + + G+ +++ L VL P
Sbjct: 327 ------AQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNW 380
Query: 144 YTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTP 202
E+ + C A G P E+ + DGT + G TV
Sbjct: 381 TWPENSQQTPMC-QAWGNPLPELKCLKDGTFPLPI-----------GESVTV-------- 420
Query: 203 KKEHHNTTFTCQAQNTADRTYKVARLKLLVKY 234
T+ C+A++T + + V
Sbjct: 421 -TRDLEGTYLCRARSTQGEVTREVTVN--VLS 449
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 148 bits (375), Expect = 8e-39
Identities = 78/393 (19%), Positives = 117/393 (29%), Gaps = 75/393 (19%)
Query: 390 GPRFRARPYSVQV---DRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLL---- 442
GP F P V V L C+V GNP P I W +D +G +++
Sbjct: 5 GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSL 64
Query: 443 ----MTSDDLAGRYYCKASVMGFPEVGA----EATVYLKGRPTIISH--RTQFGIPGDTA 492
AG Y C A+ G EA + + T G
Sbjct: 65 LINNPNKTQDAGTYQCIATN----SFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGM 120
Query: 493 RVECSAFSIPPPEKVTWSYRGEEI------------------GVGSSD--DYS--VHNDV 530
+ C W + V SD +Y+ V N V
Sbjct: 121 VLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTV 180
Query: 531 GKSE----------DSETLDVTYGPRFR-ARPYSVQVDRGAGVNLLCDVDGNPAPEITWI 579
+ ++ + Y P+ P +V ++G V L C GNP P I W
Sbjct: 181 TNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWR 240
Query: 580 HED------SDKVVGNSPNLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTI 632
D + ++ L + + AG Y C A G + A+ + +P
Sbjct: 241 RADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRG--KNVAKGQLTFYAQPNW 298
Query: 633 ISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKS 691
+ ++ EC A P P W G+ + + D +E
Sbjct: 299 VQIINDIHVAMEESVFWECKANGRPKP-TYRWLKNGDPL---LTRDRIQIEQ-------G 347
Query: 692 TLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
TL I G+Y C N +G L
Sbjct: 348 TLNITIVNLSDAGMYQCVAENKHGVIFSSAELS 380
Score = 140 bits (355), Expect = 3e-36
Identities = 69/349 (19%), Positives = 106/349 (30%), Gaps = 57/349 (16%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT------ELYLTNITRHQHDSIVKC 370
E V+L C+ + NP RW +N V L + N + Q +C
Sbjct: 22 EEKKVKLSCEVKGNPK-PHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQC 80
Query: 371 EVHNDVGKSEDSE-TLDVTYGPRFRARPYS-VQVDRGAGVNLLCDV-DGNPAPEITWIHE 427
N G E L Y F+ R S V V RG G+ LLC + WI
Sbjct: 81 IATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFN 140
Query: 428 D-----SDKVVGNSPNLTLLM---TSDDLAGRYYCKAS--VMGFPEVGAEATVYLKGRPT 477
+ ++ + L + D G Y C + V +G + L+
Sbjct: 141 EYPSYQDNRRFVSQETGNLYIAKVEKSD-VGNYTCVVTNTVTNHKVLGPPTPLILRNDGV 199
Query: 478 IISHRTQFGIP---------GDTARVECSAFSIPPPEKVTWSYRGEEI------------ 516
+ + + + G T ++EC A P P + W +
Sbjct: 200 MGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPT-ILWRRADGKPIARKARRHKSNG 258
Query: 517 -----GVGSSD--DYS--VHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCD 567
D Y N GK+ L P + + V V C
Sbjct: 259 ILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECK 318
Query: 568 VDGNPAPEITWIHED-----SDKVVGNSPNLTLLMTSDDLAGRYYCKAS 611
+G P P W+ D++ L + + + AG Y C A
Sbjct: 319 ANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAE 367
Score = 126 bits (317), Expect = 3e-31
Identities = 71/382 (18%), Positives = 123/382 (32%), Gaps = 71/382 (18%)
Query: 131 PPDPPRIVQ--GDTLY--TTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEA 185
P P VQ ++ +E+++++L C G P I W +GT +
Sbjct: 2 PGSGPVFVQEPSHVMFPLDSEEKKVKLSC-EVKGNPKPHIRWKLNGTDVDIGM------- 53
Query: 186 SVDGRRTTVKSTLVLT-PKKEHHNTTFTCQAQNTA--DRTYKVARLKLLVKYAPKVQVSV 242
D R + V +L++ P K T+ C A N+ + + KL Y +
Sbjct: 54 --DFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREA---KLQFAYLENFKTRT 108
Query: 243 IGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAAS------ATELYLTNITRHQ 296
+ + G + L C + + Y W N+ P LY+ + +
Sbjct: 109 RSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSD 168
Query: 297 -------------HDSIVKCEVQVSVIGSNRLVE-----------------GTDVRLYCK 326
+ ++ + + + E GT V+L C
Sbjct: 169 VGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECF 228
Query: 327 AEANPSHMKYRWY-INDQPVPAAASATE----LYLTNITRHQHDS-IVKCEVHNDVGKSE 380
A NP W + +P+ A + L + N Q D+ +C N GK+
Sbjct: 229 ALGNPVP-TILWRRADGKPIARKARRHKSNGILEIPNFQ--QEDAGSYECVAENSRGKNV 285
Query: 381 DSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVVGN 435
L P + + V V C +G P P W+ D++
Sbjct: 286 AKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIE 345
Query: 436 SPNLTLLMTSDDLAGRYYCKAS 457
L + + + AG Y C A
Sbjct: 346 QGTLNITIVNLSDAGMYQCVAE 367
Score = 118 bits (296), Expect = 2e-28
Identities = 77/406 (18%), Positives = 124/406 (30%), Gaps = 78/406 (19%)
Query: 29 KFAMEPQDQTAVV---GSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAM 81
F EP + +V L C V G ++W + + + RY++
Sbjct: 7 VFVQEPSHVMFPLDSEEKKVKLSCEV---KGNPKPHIRWKLNGTDVDIGMD----FRYSV 59
Query: 82 IGSDEEGDYSLEIYPVMLDDDA-RYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQG 140
+ SL I DA YQC + G I SR A L + +
Sbjct: 60 VDG------SLLINNPNKTQDAGTYQCIATNS-FGT--IVSREAKLQFAYLENFKTRTR- 109
Query: 141 DTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRRTTVKSTLV 199
T+ + + L C WI + + N R + + L
Sbjct: 110 STVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQET---------GNLY 160
Query: 200 LTPKKEHHNTTFTCQAQNTADRTYKVARLKLLV--------KYAPKVQVSVIGSNRLVEG 251
+ ++ +TC NT + L+ +Y PK++V + +G
Sbjct: 161 IAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKG 220
Query: 252 TDVRLYCKAEANPSHMKYRWY-INDQPVPAAASATE----LYLTNITRHQHDS------- 299
T V+L C A NP W + +P+ A + L + N Q D+
Sbjct: 221 TTVKLECFALGNPVP-TILWRRADGKPIARKARRHKSNGILEIPNFQ--QEDAGSYECVA 277
Query: 300 -----IVKCEVQVSV---------IGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPV 345
+ Q++ I + V CKA P YRW N P+
Sbjct: 278 ENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKP-TYRWLKNGDPL 336
Query: 346 PAAA----SATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDV 387
L +T + + +C N G S L V
Sbjct: 337 LTRDRIQIEQGTLNITIVNL-SDAGMYQCVAENKHGVIFSSAELSV 381
Score = 87.2 bits (216), Expect = 3e-18
Identities = 42/234 (17%), Positives = 77/234 (32%), Gaps = 37/234 (15%)
Query: 5 TRVQSALWVLLALSMGSLAQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQW 60
+V L+ + G + +Y + P+ A G+ V L C G + W
Sbjct: 183 HKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFA---LGNPVPTILW 239
Query: 61 TKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIR 120
+ D + ++ R + + LEI +D Y+C G+
Sbjct: 240 RRAD-----GKPIARKARR------HKSNGILEIPNFQQEDAGSYECVAENS-RGK---N 284
Query: 121 SRFATLTVLVPPDPPRIVQG-DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNV 179
LT P VQ + ++ + + EC ANG+P W+
Sbjct: 285 VAKGQLTFYA---QPNWVQIINDIHVAMEESVFWEC-KANGRPKPTYRWL---------- 330
Query: 180 RVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVK 233
+ + R + TL +T + C A+N + A L ++ +
Sbjct: 331 KNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVIAE 384
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 147 bits (373), Expect = 2e-38
Identities = 62/410 (15%), Positives = 109/410 (26%), Gaps = 87/410 (21%)
Query: 385 LDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAP-EITWIH--------EDSDKVVGN 435
L V P + +P V L C ++GN + +W E + + +
Sbjct: 1 LPVDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKD 60
Query: 436 SPNLTLLMTSDDLAGRYYCKASVMGFPEVGA----EATVYLKGRPTIISH-RTQFGIPGD 490
+L L G Y C A G + + + I G
Sbjct: 61 EGSLVFLRPQASDEGHYQCFAET----PAGVASSRVISFRKTYLIASPAKTHEKTPIEGR 116
Query: 491 TARVECSAFSIPPPEKVTWSYRGEEIGVG---------------------------SSD- 522
+++C + P +TW R SD
Sbjct: 117 PFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDI 176
Query: 523 -DYS--VHNDVGKSE-----------DSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDV 568
Y N E + P + + G + C
Sbjct: 177 YKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMY 236
Query: 569 DGNPAPEITWIHEDSD-----------KVVGNSPNLTLLMTSDDLAGRYYCKAS-VMGFP 616
NP + D + L T + G Y C+ +G P
Sbjct: 237 GSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKP 296
Query: 617 EVGAEATVYLKGRPTIISH--RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGS 674
+ + + P + G + C +P P V WS+ + + S
Sbjct: 297 QK-HSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAP-NVVWSHNAKPL---S 351
Query: 675 SDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
+V + S L+I+ ++ G Y C +N +G E +++
Sbjct: 352 GGRATVTD--------SGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ 393
Score = 129 bits (325), Expect = 3e-32
Identities = 66/408 (16%), Positives = 109/408 (26%), Gaps = 70/408 (17%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRV--IDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDE 86
+P + + L C + D+ W KD + + +
Sbjct: 8 VLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAAL---------R 58
Query: 87 EGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTT 146
+ + SL D+ YQC T G SR + P
Sbjct: 59 KDEGSLVFLRPQASDEGHYQCFAET-PAGV--ASSRVISFRKTYLIASPAKTH--EKTPI 113
Query: 147 EDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVL-----T 201
E R +L+C+ N P ITW N VT+ RR T L T
Sbjct: 114 EGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDF----DRRITAGPDGNLYFTIVT 169
Query: 202 PKKEHHNTTFTCQAQNTADRTYKV-ARLKLLV-------KYAPKVQVSVIGSNRLVEGTD 253
+ + C A+N A V ++ V V G
Sbjct: 170 KEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDV 229
Query: 254 VRLYCKAEANPSHMKYRWYINDQPVPAAASA----------TELYLTNITRH-------- 295
+YC +NP ++ N + V L
Sbjct: 230 TMIYCMYGSNPMG-YPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCE 288
Query: 296 ---QHDSIVKCEVQVSVIG----------SNRLVEGTDVRLYCKAEANPSHMKYRWYIND 342
K ++++V+ + +G DV + CK P+ W N
Sbjct: 289 VDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAP-NVVWSHNA 347
Query: 343 QPVPA---AASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDV 387
+P+ + + L + + C N+ G + V
Sbjct: 348 KPLSGGRATVTDSGLVIKGVKN-GDKGYYGCRATNEHGDKYFETLVQV 394
Score = 112 bits (281), Expect = 1e-26
Identities = 54/369 (14%), Positives = 86/369 (23%), Gaps = 78/369 (21%)
Query: 230 LLVKYAPKVQV---SVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATE 286
L V P ++ V+ E L C E N +KY W + +
Sbjct: 1 LPVDKYPVLKDQPAEVL----FRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAA 56
Query: 287 LYLTN----ITRHQHD--------------SIVKCEVQVSVIG---------SNRLVEGT 319
L R Q + +EG
Sbjct: 57 LRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGR 116
Query: 320 DVRLYCKAEANPSHMKYRWYINDQPVPAAASATE------------LYLTNITRHQHDSI 367
+L C W A T+ LY T +T+ I
Sbjct: 117 PFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDI 176
Query: 368 VK--CEVHNDVGKSE-----------DSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDV 414
K C N E + P + + G + C
Sbjct: 177 YKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMY 236
Query: 415 DGNPAPEITWIHEDSD-----------KVVGNSPNLTLLMTSDDLAGRYYCKAS-VMGFP 462
NP + D + L T + G Y C+ +G P
Sbjct: 237 GSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKP 296
Query: 463 EVGAEATVYLKGRPTIISH--RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGS 520
+ + + P + G + C +P P V WS+ + + S
Sbjct: 297 QK-HSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAP-NVVWSHNAKPL---S 351
Query: 521 SDDYSVHND 529
+V +
Sbjct: 352 GGRATVTDS 360
Score = 107 bits (269), Expect = 4e-25
Identities = 71/399 (17%), Positives = 117/399 (29%), Gaps = 86/399 (21%)
Query: 126 LTVLVPPDPPRIVQ--GDTLYTTEDREIELECISANGKP-PAEITWI-DGTGTVMSNVRV 181
L V P + + L+ E+ LEC G + +W DG +
Sbjct: 1 LPVDKYP---VLKDQPAEVLFR-ENNPTVLEC-IIEGNDQGVKYSWKKDGK-----SYNW 50
Query: 182 TEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTA-DRTYKVARLKLLVKYAPKVQV 240
E + + +LV + + C A+ A + +V + A +
Sbjct: 51 QEH---NAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKT 107
Query: 241 SVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATE------------LY 288
+EG +L C W A T+ LY
Sbjct: 108 HEK---TPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLY 164
Query: 289 LTNITRHQ----------------HDSIVKCEVQVSVIGSNRL----------------- 315
T +T+ + +V E ++ + +
Sbjct: 165 FTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMA 224
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASA----------TELYLTNITRHQHD 365
G +YC +NP ++ N + V L D
Sbjct: 225 KAGDVTMIYCMYGSNPMG-YPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTL--PED 281
Query: 366 S-IVKCEVHNDVGKSED-SETLDVTYGPRFRARPYSVQ-VDRGAGVNLLCDVDGNPAPEI 422
+ CEV N VGK + S L V P++ +P V V +G V + C V G PAP +
Sbjct: 282 EGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNV 341
Query: 423 TWIHE----DSDKVVGNSPNLTLLMTSDDLAGRYYCKAS 457
W H + L + + G Y C+A+
Sbjct: 342 VWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRAT 380
Score = 93.8 bits (233), Expect = 2e-20
Identities = 35/232 (15%), Positives = 73/232 (31%), Gaps = 35/232 (15%)
Query: 5 TRVQSALWVLLALSMGSLAQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQW 60
V + + ++ + E +D A G + C +
Sbjct: 190 EEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMY---GSNPMGYPNY 246
Query: 61 TKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIR 120
K+ ++++G + + L + +D+ Y C+V G +G+ +
Sbjct: 247 FKNG------KDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNG-VGK--PQ 297
Query: 121 SRFATLTVLVPPDPPRIVQG--DTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMS 177
LTV+ P+ Q + + +++ + C G P + W +
Sbjct: 298 KHSLKLTVVS---APKYEQKPEKVIVVKQGQDVTIPC-KVTGLPAPNVVWSHNA------ 347
Query: 178 NVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLK 229
+ GR T S LV+ K + C+A N Y ++
Sbjct: 348 ------KPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ 393
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 135 bits (342), Expect = 2e-35
Identities = 59/345 (17%), Positives = 106/345 (30%), Gaps = 82/345 (23%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAG 450
P F +P SV + G C V G +ITW ++ + + N + + +
Sbjct: 6 PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDN--REIRPGGNYKMTLVENT--- 60
Query: 451 RYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWS 510
+ + +V D + C A
Sbjct: 61 ------ATLTVLKVTKG----------------------DAGQYTCYA------------ 80
Query: 511 YRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQ-VDRGAGVNLLCDVD 569
N GK S L V PRF + + V + C +
Sbjct: 81 ----------------SNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIG 124
Query: 570 GNPAPEITWIHEDSD---------KVVGNSPNLTLLMTSDDLAGRYYCKAS-VMGFPEVG 619
G+P ++ W ++++ V + L + S + +G Y C+A G
Sbjct: 125 GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAG--SAS 182
Query: 620 AEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDY 678
+ ++ +K P + G +EC PP + V+W E+ S Y
Sbjct: 183 SSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQ-VSWHKDKRELR--SGKKY 239
Query: 679 SVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723
++ + +++ I G Y C SN GS + +
Sbjct: 240 KIMSE----NFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSI 280
Score = 118 bits (297), Expect = 2e-29
Identities = 53/257 (20%), Positives = 88/257 (34%), Gaps = 35/257 (13%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
F ++P +G T C V TG + W KD+ + P Y M +
Sbjct: 7 FFDLKPVSVDLALGESGTFKCHV---TGTAPIKITWAKDNREIRPG------GNYKM--T 55
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQG--DT 142
E +L + V D +Y C S + G+ S A L V PPR ++ +
Sbjct: 56 LVENTATLTVLKVTKGDAGQYTCYASN-VAGK---DSCSAQLGVQE---PPRFIKKLEPS 108
Query: 143 LYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTP 202
+D EC G P ++ W + + + + L +
Sbjct: 109 RIVKQDEHTRYEC-KIGGSPEIKVLWYKDETEIQESSKFRMSFVESV------AVLEMYN 161
Query: 203 KKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEA 262
+ +TC+A N A LK VK P ++G DV L C+ +
Sbjct: 162 LSVEDSGDYTCEAHNAAGSASSSTSLK--VKEPPVF-RKKPHPVETLKGADVHLECELQG 218
Query: 263 NPSHMKYRWYINDQPVP 279
P + W+ + + +
Sbjct: 219 TPP-FQVSWHKDKRELR 234
Score = 106 bits (267), Expect = 1e-25
Identities = 49/192 (25%), Positives = 72/192 (37%), Gaps = 21/192 (10%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD---------KVVGNSPNLTL 595
P F +P SV + G C V G +ITW ++ + +V N+ LT+
Sbjct: 6 PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTV 65
Query: 596 LMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISH--RTQFGIPGDTARVECSA 652
L + AG+Y C AS V G + A + ++ P I ++ + R EC
Sbjct: 66 LKVTKGDAGQYTCYASNVAG--KDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKI 123
Query: 653 FSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSN 712
P + V W EI S S +E + L + + G Y C N
Sbjct: 124 GGSPEIK-VLWYKDETEIQESSKFRMSFVES------VAVLEMYNLSVEDSGDYTCEAHN 176
Query: 713 PYGSDSVEIMLK 724
GS S LK
Sbjct: 177 AAGSASSSTSLK 188
Score = 103 bits (259), Expect = 2e-24
Identities = 57/277 (20%), Positives = 100/277 (36%), Gaps = 57/277 (20%)
Query: 247 RLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA--------SATELYLTNITRHQHD 298
L G C +K W +++ + + L + +T + D
Sbjct: 16 DLALGESGTFKCHVTGTA-PIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVT--KGD 72
Query: 299 S------------IVKCEVQVSV---------IGSNRLV-EGTDVRLYCKAEANPSHMKY 336
+ C Q+ V + +R+V + R CK +P +K
Sbjct: 73 AGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPE-IKV 131
Query: 337 RWYINDQPVPAA--------ASATELYLTNITRHQHDS-IVKCEVHNDVGKSEDSETLDV 387
WY ++ + + S L + N++ DS CE HN G + S +L V
Sbjct: 132 LWYKDETEIQESSKFRMSFVESVAVLEMYNLS--VEDSGDYTCEAHNAAGSASSSTSLKV 189
Query: 388 TYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVV----GNSPN 438
P FR +P+ V+ +GA V+L C++ G P +++W + K +
Sbjct: 190 KEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTS 249
Query: 439 LTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKG 474
+ +L G Y CKAS +G ++ LK
Sbjct: 250 IHILNVDSADIGEYQCKASNDVG--SYTCVGSITLKA 284
Score = 88.3 bits (219), Expect = 3e-19
Identities = 34/206 (16%), Positives = 69/206 (33%), Gaps = 31/206 (15%)
Query: 29 KFAMEPQD-QTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIG 83
+F + + + C++ G + W KD+ + ++ M
Sbjct: 100 RFIKKLEPSRIVKQDEHTRYECKI---GGSPEIKVLWYKDE------TEIQESSKFRM-- 148
Query: 84 SDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQG-DT 142
S E LE+Y + ++D Y C+ G S +L V PP +
Sbjct: 149 SFVESVAVLEMYNLSVEDSGDYTCEAHNAA-GS---ASSSTSLKVKEPP---VFRKKPHP 201
Query: 143 LYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTP 202
+ T + ++ LEC G PP +++W + S + + +++ +
Sbjct: 202 VETLKGADVHLEC-ELQGTPPFQVSWHKDKRELRSGKKYK--IMSENFL----TSIHILN 254
Query: 203 KKEHHNTTFTCQAQNTADRTYKVARL 228
+ C+A N V +
Sbjct: 255 VDSADIGEYQCKASNDVGSYTCVGSI 280
Score = 61.3 bits (149), Expect = 3e-10
Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 13/101 (12%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVI-DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEE 87
F +P + G+ V L C + + W KD L +Y + E
Sbjct: 194 VFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSG------KKYKI--MSEN 245
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
S+ I V D YQC+ S +G + ++T+
Sbjct: 246 FLTSIHILNVDSADIGEYQCKASN-DVGS---YTCVGSITL 282
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 136 bits (345), Expect = 6e-35
Identities = 60/376 (15%), Positives = 101/376 (26%), Gaps = 72/376 (19%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT-------ELYLTNITRHQHDSIV- 368
T + CKA NP + W +D +L + V
Sbjct: 18 NSTGAEIECKASGNPMP-EIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVH 76
Query: 369 ----KCEVHNDVGKSEDSE-TLDVTYGPRFRARPYSVQVDRGAGVNLLCDVD---GNPAP 420
C N G + + + A V RG + C + +
Sbjct: 77 AQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVE 136
Query: 421 EITWIHEDSDKVVGNS---------PNLTLLMTS---DDLAGRYYCKAS--VMGFPEVGA 466
++W ++ + + P+ L + +D Y C+ + G + A
Sbjct: 137 VVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSA 196
Query: 467 EATVYLKGRPTI--------ISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGV 518
+ P + + + T + C A P P W E
Sbjct: 197 TKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPS-FRWYKFIEGTTR 255
Query: 519 GSSDDYS--------------------------VHNDVGKSEDSETLDVTYGPRFRARPY 552
+ + V+N VG L VT + P
Sbjct: 256 KQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPP 315
Query: 553 SVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS- 611
+ VD G C GNP ++W+ D + + L + + G Y C
Sbjct: 316 TQTVDFGRPAVFTCQYTGNPIKTVSWMK-DGKAIGHSESVLRIESVKKEDKGMYQCFVRN 374
Query: 612 VMGFPEVGAEATVYLK 627
AEA+ LK
Sbjct: 375 DRES----AEASAELK 386
Score = 136 bits (343), Expect = 1e-34
Identities = 81/407 (19%), Positives = 126/407 (30%), Gaps = 95/407 (23%)
Query: 390 GPRFRARPYS-VQVDRGAGVNLLCDVDGNPAPEITWIHED------SDKVVGNSPNLTLL 442
GP F P + + G + C GNP PEI WI D + S + L+
Sbjct: 3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLV 62
Query: 443 MTS--------DDLAGRYYCKASVMGFPEVGA----EATVYLKGRPTIISH-RTQFGIPG 489
+ A Y C A + G+ + V + + I G
Sbjct: 63 FPPFRAEDYRQEVHAQVYACLARN----QFGSIISRDVHVRAVVAQYYEADVNKEHVIRG 118
Query: 490 DTARVECSAFSIP--PPEKVTWSYRGEEIG----------------------VGSSD--- 522
++A ++C S E V+W EE VG D
Sbjct: 119 NSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYK 178
Query: 523 DYS--VHNDVG---KSEDSETLDVTYGPRFRARPY-------SVQVDRGAGVNLLCDVDG 570
Y + + + ++ V P + P +++ ++LLC G
Sbjct: 179 SYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQG 238
Query: 571 NPAPEITWIHED-----------SDKVVGNSPNLTLLMTSDDLAGRYYCKAS-VMGFPEV 618
PAP W +D+V S L + + +G+Y C + +G
Sbjct: 239 FPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVG--GE 296
Query: 619 GAEATVYLKGRPTI-ISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDD 677
E + + + I TQ G A C P V+W G+ I G S+
Sbjct: 297 SVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKT-VSWMKDGKAI--GHSE- 352
Query: 678 YSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
S L I + + G+Y C V N S LK
Sbjct: 353 -------------SVLRIESVKKEDKGMYQCFVRNDRESAEASAELK 386
Score = 128 bits (324), Expect = 3e-32
Identities = 70/397 (17%), Positives = 127/397 (31%), Gaps = 70/397 (17%)
Query: 134 PPRIVQ--GDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRR 191
P ++ + + + E+EC A+G P EI WI GT + +V + S DG+
Sbjct: 3 GPVFLKEPTNRIDFSNSTGAEIEC-KASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKL 61
Query: 192 TTVKSTLVLTPKKEHHNTTFTCQAQNTADRTY-KVARLKLLVKYAPKVQVSVIGSNRLVE 250
++E H + C A+N + ++ +V + V+ ++
Sbjct: 62 V-FPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKE---HVIR 117
Query: 251 GTDVRLYCKAEANPSHMK--YRWYINDQPVPAAASAT----------ELYLTNITRHQHD 298
G + C + + W+ +++ + EL++ +
Sbjct: 118 GNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGY 177
Query: 299 SIVKCEVQVSVIGSNRL------------------------------VEGTDVRLYCKAE 328
+C + + G RL + + L C A+
Sbjct: 178 KSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQ 237
Query: 329 ANPSHMKYRWYINDQPVPAAASATE----------LYLTNITRHQHDSIV-KCEVHNDVG 377
P+ +RWY + + L + + DS C V+N VG
Sbjct: 238 GFPAP-SFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAV--VEDSGKYLCVVNNSVG 294
Query: 378 KSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSP 437
L VT + P + VD G C GNP ++W+ D + +
Sbjct: 295 GESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMK-DGKAIGHSES 353
Query: 438 NLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLK 473
L + + G Y C AEA+ LK
Sbjct: 354 VLRIESVKKEDKGMYQCFVRNDRES----AEASAELK 386
Score = 108 bits (270), Expect = 3e-25
Identities = 60/412 (14%), Positives = 118/412 (28%), Gaps = 82/412 (19%)
Query: 29 KFAMEPQDQTAVV-GSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAMIG 83
F EP ++ + + C+ +G + W + D + I
Sbjct: 5 VFLKEPTNRIDFSNSTGAEIECKA---SGNPMPEIIWIRSD-----GTAVGDVPGLRQIS 56
Query: 84 SDEEGDYSLEIYPV------MLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRI 137
SD L P Y C G +I SR + +V
Sbjct: 57 SD----GKLVFPPFRAEDYRQEVHAQVYACLARN-QFG--SIISRDVHVRAVVAQYYEAD 109
Query: 138 VQGDTLYTTEDREIELECI--SANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVK 195
V + ++C+ S ++W DG+ +
Sbjct: 110 VN--KEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEY-----DGKYLVLP 162
Query: 196 S-TLVLTP-KKEHHNTTFTCQAQNTADRTYKVARLKLLV-------KYAPKVQVSVIGSN 246
S L + E ++ C+ ++ +++ K + AP+ V
Sbjct: 163 SGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPL 222
Query: 247 RLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATE----------LYLTNITRHQ 296
L+ + L C A+ P+ +RWY + + L + +
Sbjct: 223 ELMVAHTISLLCPAQGFPAP-SFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAV--V 279
Query: 297 HDS------------IVKCEVQVSV---------IGSNRLVEGTDVRLYCKAEANPSHMK 335
DS E ++V + + G C+ NP
Sbjct: 280 EDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIK-T 338
Query: 336 YRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDV 387
W + + + S + L + ++ + + + +C V ND +E S L +
Sbjct: 339 VSWMKDGKAIG--HSESVLRIESVKK-EDKGMYQCFVRNDRESAEASAELKL 387
Score = 107 bits (269), Expect = 4e-25
Identities = 44/277 (15%), Positives = 78/277 (28%), Gaps = 28/277 (10%)
Query: 28 QKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQ----WTKDDFALGPHRNLSGFDRYAMIG 83
Q + + + + G+ + C + W D+ +Y ++
Sbjct: 104 QYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYD-GKYLVLP 162
Query: 84 SDEEGDYSLEIYPVMLDDD-ARYQCQVSTGILGEPAIRSRFATLTVLVPP---DPPRIVQ 139
S L I V +D YQC+ L S V+ P PR
Sbjct: 163 S-----GELHIREVGPEDGYKSYQCRT-KHRLTGETRLSATKGRLVITEPISSSAPRTPA 216
Query: 140 G--DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKST 197
L I L C A G P W V ++ R V T
Sbjct: 217 LVQKPLELMVAHTISLLCP-AQGFPAPSFRWYKFIEGTTRKQAVV----LNDRVKQVSGT 271
Query: 198 LVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLY 257
L++ + + C N+ L V ++ + + G
Sbjct: 272 LIIKDAVVEDSGKYLCVVNNSVGGESVETVLT--VTAPLSAKID-PPTQTVDFGRPAVFT 328
Query: 258 CKAEANPSHMKYRWYINDQPVPAAASATELYLTNITR 294
C+ NP W + + + S + L + ++ +
Sbjct: 329 CQYTGNPIK-TVSWMKDGKAIG--HSESVLRIESVKK 362
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 126 bits (318), Expect = 5e-33
Identities = 42/228 (18%), Positives = 69/228 (30%), Gaps = 30/228 (13%)
Query: 34 PQDQTAVVGSRVTLPCRV--IDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEE---- 87
P + G V L C +L+W D + R S + + +
Sbjct: 7 PPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRG 66
Query: 88 --------GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIV- 138
L + + D+ Y C V G G A L V P+ +
Sbjct: 67 RSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAG---TAEATARLNVFAKPEATEVSP 123
Query: 139 -QGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASV-------DGR 190
+G + + C S NG P +ITW + V + E +
Sbjct: 124 NKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASG 183
Query: 191 RTTVKSTLVLTPKKEHHNTTFTCQAQNT----ADRTYKVARLKLLVKY 234
++ STL L +K+ + +F C A + L + Y
Sbjct: 184 LLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTLHY 231
Score = 53.7 bits (128), Expect = 5e-08
Identities = 37/226 (16%), Positives = 57/226 (25%), Gaps = 46/226 (20%)
Query: 551 PYSVQVDRGAGVNLLCDVDGNPAP-EITWIHEDSDKV----------------------- 586
P V+V RG V L C G + W D
Sbjct: 7 PPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRG 66
Query: 587 ------VGNSPNLTL--LMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQ 638
+ + L L D+ Y C A A + + +P
Sbjct: 67 RSPPYQLDSQGRLVLAEAQVGDE--RDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPN 124
Query: 639 FGI-----PGDTARVECSAFSIPPPEKVTW-------SYRGEEIGVGSSDDYSVLEDPLK 686
G C++ + P K+TW E G +V E
Sbjct: 125 KGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGL 184
Query: 687 EGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFPLL 732
+ STL +R + D ++C+ + P L
Sbjct: 185 LSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTLH 230
Score = 39.0 bits (90), Expect = 0.004
Identities = 34/209 (16%), Positives = 61/209 (29%), Gaps = 55/209 (26%)
Query: 304 EVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQ---------------PVPAA 348
EV++SV ++ G V L C H W++ D+ +
Sbjct: 1 EVRLSVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVT 60
Query: 349 ASATELYLTNITRHQHDSIV------------KCEVHNDVGKSEDSET-LDVTYGPR--- 392
T +V C V + ++ L+V P
Sbjct: 61 MHDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATE 120
Query: 393 -FRARPYSVQVDRGAGVNLLCDV-DGNPAPEITW----------------------IHED 428
+ ++ A C+ +GNPAP+ITW +
Sbjct: 121 VSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVRE 180
Query: 429 SDKVVGNSPNLTLLMTSDDLAGRYYCKAS 457
+ ++ + L L + DD ++C A
Sbjct: 181 ASGLLSLTSTLYLRLRKDDRDASFHCAAH 209
Score = 38.6 bits (89), Expect = 0.006
Identities = 32/211 (15%), Positives = 48/211 (22%), Gaps = 46/211 (21%)
Query: 397 PYSVQVDRGAGVNLLCDVDGNPAP-EITWIHEDSDKV----------------------- 432
P V+V RG V L C G + W D
Sbjct: 7 PPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRG 66
Query: 433 ------VGNSPNLTL--LMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQ 484
+ + L L D+ Y C A A + + +P
Sbjct: 67 RSPPYQLDSQGRLVLAEAQVGDE--RDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPN 124
Query: 485 FGI-----PGDTARVECSAFSIPPPEKVTW-------SYRGEEIGVGSSDDYSVHNDVGK 532
G C++ + P K+TW E G +V G
Sbjct: 125 KGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGL 184
Query: 533 SEDSETLDVTYGPRFRARPYSVQVDRGAGVN 563
+ TL + R +
Sbjct: 185 LSLTSTLYLRLRKDDRDASFHCAAHYSLPEG 215
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 121 bits (304), Expect = 2e-30
Identities = 44/271 (16%), Positives = 85/271 (31%), Gaps = 32/271 (11%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV--LQWTKDDFALGPHRNLSGFDRYAMIGSDE 86
+ + P VG C+V + W + LS + + ++
Sbjct: 4 QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPN-----GEKLSPNQQRISVVWND 58
Query: 87 EGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP---DPPRIVQGDTL 143
+ +L IY +DD Y+C V+ G + + + P +
Sbjct: 59 DDSSTLTIYNANIDDAGIYKCVVTAE-DGT--QSEATVNVKIFQKLMFKNAPTPQE---- 111
Query: 144 YTTEDREIELECISANGKPPAEITWI--DGTGTVMSNVRVTEEASVDGRRTTVKSTLVLT 201
E + + C P I W + +VR ++ + L +
Sbjct: 112 -FKEGEDAVIVC-DVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN---------NYLQIR 160
Query: 202 PKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLV-EGTDVRLYCKA 260
K+ T+ C+ + A ++++V P VQ N G V L C A
Sbjct: 161 GIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDA 220
Query: 261 EANPSHMKYRWYINDQPVPAAASATELYLTN 291
+ P W + +P+ E ++ +
Sbjct: 221 DGFPE-PTMSWTKDGEPIENEEEDDEKHIFS 250
Score = 120 bits (303), Expect = 3e-30
Identities = 48/276 (17%), Positives = 86/276 (31%), Gaps = 47/276 (17%)
Query: 489 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYS----------------------- 525
G++ C + ++W E + S
Sbjct: 17 GESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGI 76
Query: 526 ----VHNDVGKSEDSE-TLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH 580
V + G ++ + + F+ P + G ++CDV + P I W H
Sbjct: 77 YKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKH 136
Query: 581 EDSDKVVGNSPNLTLL---------MTSDDLAGRYYCKASVMGFPEVG-AEATVYLKGRP 630
+ D ++ +L + D G Y C+ ++ E+ + V + P
Sbjct: 137 KGRDVILKKDVRFIVLSNNYLQIRGIKKTD-EGTYRCEGRILARGEINFKDIQVIVNVPP 195
Query: 631 TIISHRTQFGI---PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKE 687
T+ + ++ G + + C A P P ++W+ GE I DD +
Sbjct: 196 TVQARQSIVNATANLGQSVTLVCDADGFPEPT-MSWTKDGEPIENEEEDDEKH----IFS 250
Query: 688 GIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723
S L IR + Y C N G I L
Sbjct: 251 DDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHL 286
Score = 114 bits (288), Expect = 3e-28
Identities = 51/292 (17%), Positives = 97/292 (33%), Gaps = 58/292 (19%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPA-PEITWIHEDSDKVVGNSPNLTLLMTSDDL- 448
+ P ++ G LC V G+ +I+W + +K+ N ++++ DD
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 449 -----------AGRYYCKASVMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVEC 496
AG Y C + + A V + + + Q G+ A + C
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVC 122
Query: 497 SAFSIPPPEKVTWSYRGEEIGVGSSDDYSVH-----------------------NDVGKS 533
S PP + W ++G ++ + + V
Sbjct: 123 DVVSSLPPT-IIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGE 181
Query: 534 EDSE--TLDVTYGPRFRARP--YSVQVDRGAGVNLLCDVDGNPAPEITWIHEDS------ 583
+ + + V P +AR + + G V L+CD DG P P ++W +
Sbjct: 182 INFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEE 241
Query: 584 ---DKVVGNSPNLTL----LMTSDDLAGRYYCKA-SVMGFPEVGAEATVYLK 627
+K + + + L + +D Y C A + G + V+ K
Sbjct: 242 EDDEKHIFSDDSSELTIRNVDKND--EAEYVCIAENKAGEQDASIHLKVFAK 291
Score = 110 bits (276), Expect = 9e-27
Identities = 48/256 (18%), Positives = 89/256 (34%), Gaps = 31/256 (12%)
Query: 306 QVSVIGSNRLV-EGTDVRLYCKAEANPSHMKYRWYINDQP-----------VPAAASATE 353
QV ++ S + G C+ + W+ + V ++
Sbjct: 4 QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSST 63
Query: 354 LYLTNITRHQHDS-IVKCEVHNDVGKSEDSE-TLDVTYGPRFRARPYSVQVDRGAGVNLL 411
L + N D+ I KC V + G ++ + + F+ P + G ++
Sbjct: 64 LTIYNAN--IDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIV 121
Query: 412 CDVDGNPAPEITWIHEDSDKVVGNSPNLTLL---------MTSDDLAGRYYCKASVMGFP 462
CDV + P I W H+ D ++ +L + D G Y C+ ++
Sbjct: 122 CDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTD-EGTYRCEGRILARG 180
Query: 463 EVG-AEATVYLKGRPTIISHRTQFGI---PGDTARVECSAFSIPPPEKVTWSYRGEEIGV 518
E+ + V + PT+ + ++ G + + C A P P ++W+ GE I
Sbjct: 181 EINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPT-MSWTKDGEPIEN 239
Query: 519 GSSDDYSVHNDVGKSE 534
DD SE
Sbjct: 240 EEEDDEKHIFSDDSSE 255
Score = 93.8 bits (233), Expect = 5e-21
Identities = 34/209 (16%), Positives = 66/209 (31%), Gaps = 23/209 (11%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
F P Q G + C V + W + ++ R+ ++ +
Sbjct: 102 MFKNAPTPQEFKEGEDAVIVCDV---VSSLPPTIIWKHKGRDVILKKD----VRFIVLSN 154
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLY 144
+ L+I + D+ Y+C+ I + + V VPP
Sbjct: 155 N-----YLQIRGIKKTDEGTYRCEGRILA--RGEINFKDIQVIVNVPPTVQARQSIVNAT 207
Query: 145 TTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKK 204
+ + L C A+G P ++W + + E+ + S L +
Sbjct: 208 ANLGQSVTLVC-DADGFPEPTMSWTKDGEPIENEEEDDEKHIF----SDDSSELTIRNVD 262
Query: 205 EHHNTTFTCQAQNTADRTYKVARLKLLVK 233
++ + C A+N A LK+ K
Sbjct: 263 KNDEAEYVCIAENKAGEQDASIHLKVFAK 291
Score = 79.5 bits (196), Expect = 3e-16
Identities = 47/307 (15%), Positives = 87/307 (28%), Gaps = 62/307 (20%)
Query: 125 TLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWI--DGTGTVMSNVRVT 182
L V + P I G++ C A +I+W +G + R++
Sbjct: 2 VLQVDIVPSQGEISVGES--------KFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRIS 53
Query: 183 EEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSV 242
+ D STL + + C + A + + + + +
Sbjct: 54 VVWNDDDS-----STLTIYNANIDDAGIYKCVVTAEDGTQSE-ATVNVKIFQKLMFKNAP 107
Query: 243 IGSNRLV-EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASA-------TELYLTNITR 294
+ + EG D + C ++ W + V L + I +
Sbjct: 108 --TPQEFKEGEDAVIVCDVVSSLPP-TIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKK 164
Query: 295 H------------QHDSIVKCEVQVSV-----------IGSNRLVEGTDVRLYCKAEANP 331
I ++QV V I + G V L C A+ P
Sbjct: 165 TDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFP 224
Query: 332 SHMKYRWYINDQPVPAAASATE----------LYLTNITRHQHDSIVKCEVHNDVGKSED 381
W + +P+ E L + N+ + ++ C N G+ +
Sbjct: 225 E-PTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDK-NDEAEYVCIAENKAGEQDA 282
Query: 382 SETLDVT 388
S L V
Sbjct: 283 SIHLKVF 289
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 119 bits (300), Expect = 6e-30
Identities = 50/287 (17%), Positives = 98/287 (34%), Gaps = 50/287 (17%)
Query: 476 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEI------------------ 516
+ G++ C+A P ++ +GE+I
Sbjct: 5 LQVTISLSKVELSVGESKFFTCTAIGEPESI-DWYNPQGEKIISTQRVVVQKEGVRSRLT 63
Query: 517 --GVGSSDD--YS--VHNDVGKSEDSE-TLDVTYGPRFRARPYSVQVDRGAGVNLLCDVD 569
D Y + G+++++ L++ FR + +G ++C V
Sbjct: 64 IYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVS 123
Query: 570 GNPAPEITWIHEDSD---------KVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGA 620
+PAP ++W++ + + ++ N+ NL +L + G Y C+ V E+
Sbjct: 124 SSPAPAVSWLYHNEEVTTISDNRFAMLANN-NLQILNINKSDEGIYRCEGRVEARGEIDF 182
Query: 621 EATVYLKGRPTIISH----RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSD 676
+ + P IS G+ C A P P ++W G+ I ++
Sbjct: 183 RDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPA-ISWFRNGKLI--EENE 239
Query: 677 DYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723
Y + + L +R + G Y C +N G D + L
Sbjct: 240 KYILKGS------NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFL 280
Score = 118 bits (297), Expect = 2e-29
Identities = 53/291 (18%), Positives = 99/291 (34%), Gaps = 50/291 (17%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV----------GNSPNLT 440
+ V++ G C G P I W + +K++ G LT
Sbjct: 5 LQVTISLSKVELSVGESKFFTCTAIGEPES-IDWYNPQGEKIISTQRVVVQKEGVRSRLT 63
Query: 441 LLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVECSAF 499
+ + + AG Y C+A+ A + + + T Q G+ A V C
Sbjct: 64 IYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVS 123
Query: 500 SIPPPEKVTWSYRGEEIGVGSSDDYSVHND------------------------VGKSED 535
S P P V+W Y EE+ S + +++ + G+ +
Sbjct: 124 SSPAPA-VSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDF 182
Query: 536 SETLDVTYGP---RFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD-------K 585
+ + + P + ++ +RG + C G+P P I+W
Sbjct: 183 RDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYI 242
Query: 586 VVGNSPNLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISH 635
+ G++ LT+ + G Y C+A+ G E +A + + + H
Sbjct: 243 LKGSNTELTVRNIINSDGGPYVCRATNKAG--EDEKQAFLQVFVQHHHHHH 291
Score = 109 bits (275), Expect = 2e-26
Identities = 42/282 (14%), Positives = 86/282 (30%), Gaps = 44/282 (15%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV---LQWTKDDFALGPHRNLSGFDRYAMIGSD 85
+ + VG C G + W + R +
Sbjct: 6 QVTISLSKVELSVGESKFFTCTA---IGEPESIDWYNPQ-----GEKIISTQRVVV--QK 55
Query: 86 EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP---DPPRIVQGDT 142
E L IY ++D Y+CQ + G+ + L + + +
Sbjct: 56 EGVRSRLTIYNANIEDAGIYRCQATDA-KGQ--TQEATVVLEIYQKLTFREVVSPQE--- 109
Query: 143 LYTTEDREIELECISANGKPPAEITWI--DGTGTVMSNVRVTEEASVDGRRTTVKSTLVL 200
+ + E+ C + P ++W+ + T +S+ R A+ + L +
Sbjct: 110 --FKQGEDAEVVC-RVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN---------NNLQI 157
Query: 201 TPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLV-EGTDVRLYCK 259
+ + C+ + A + ++V P + + N G ++ C+
Sbjct: 158 LNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCR 217
Query: 260 AEANPSHMKYRWYINDQPVPA------AASATELYLTNITRH 295
A +P W+ N + + S TEL + NI
Sbjct: 218 ASGSPE-PAISWFRNGKLIEENEKYILKGSNTELTVRNIINS 258
Score = 102 bits (257), Expect = 3e-24
Identities = 50/279 (17%), Positives = 93/279 (33%), Gaps = 52/279 (18%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYIND-QPVPAAA--------SATELYLTNITRHQHDS 366
G C A P WY + + + + L + N D+
Sbjct: 17 SVGESKFFTCTAIGEP--ESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNAN--IEDA 72
Query: 367 -IVKCEVHNDVGKSEDSE-TLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW 424
I +C+ + G+++++ L++ FR + +G ++C V +PAP ++W
Sbjct: 73 GIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSW 132
Query: 425 IHEDSD---------KVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGR 475
++ + + ++ N+ NL +L + G Y C+ V E+ + +
Sbjct: 133 LYHNEEVTTISDNRFAMLANN-NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNV 191
Query: 476 PTIISH----RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEI--------------- 516
P IS G+ C A P P ++W G+ I
Sbjct: 192 PPAISMPQKSFNATAERGEEMTFSCRASGSPEPA-ISWFRNGKLIEENEKYILKGSNTEL 250
Query: 517 ---GVGSSDD--YS--VHNDVGKSEDSETLDVTYGPRFR 548
+ +SD Y N G+ E L V
Sbjct: 251 TVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQHHHH 289
Score = 96.8 bits (241), Expect = 4e-22
Identities = 41/209 (19%), Positives = 72/209 (34%), Gaps = 27/209 (12%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
F Q G + CRV + + W + + + +R+AM+
Sbjct: 100 TFREVVSPQEFKQGEDAEVVCRV---SSSPAPAVSWLYHNEEVTTISD----NRFAML-- 150
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLY 144
+ +L+I + D+ Y+C+ GE I R + V VPP +
Sbjct: 151 ---ANNNLQILNINKSDEGIYRCEGRVEARGE--IDFRDIIVIVNVPPAISMPQKSFNAT 205
Query: 145 TTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKK 204
E+ C A+G P I+W + N + + S + L +
Sbjct: 206 AERGEEMTFSC-RASGSPEPAISWFRNGKLIEENEKYILKGSN--------TELTVRNII 256
Query: 205 EHHNTTFTCQAQNTADRTYKVARLKLLVK 233
+ C+A N A K A L++ V+
Sbjct: 257 NSDGGPYVCRATNKAGEDEKQAFLQVFVQ 285
Score = 90.3 bits (224), Expect = 8e-20
Identities = 44/283 (15%), Positives = 88/283 (31%), Gaps = 58/283 (20%)
Query: 249 VEGTDVRLYCKAEANPSHMKYRWYIND-QPVPAAA--------SATELYLTNITRHQHDS 299
G C A P WY + + + + L + N D+
Sbjct: 17 SVGESKFFTCTAIGEP--ESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNAN--IEDA 72
Query: 300 -------------IVKCEVQVSV---------IGSNRLVEGTDVRLYCKAEANPSHMKYR 337
+ V + + + +G D + C+ ++P+
Sbjct: 73 GIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAP-AVS 131
Query: 338 WYINDQPVPAAASA-------TELYLTNITRHQHDSIVKCEVHNDVGKSEDS--ETLDVT 388
W +++ V + L + NI + + I +CE + D + V
Sbjct: 132 WLYHNEEVTTISDNRFAMLANNNLQILNINK-SDEGIYRCEGRVEARGEIDFRDIIVIVN 190
Query: 389 YGPRFRA--RPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD-------KVVGNSPNL 439
P + ++ +RG + C G+P P I+W + G++ L
Sbjct: 191 VPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTEL 250
Query: 440 TLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISH 481
T+ + G Y C+A+ G E +A + + + H
Sbjct: 251 TVRNIINSDGGPYVCRATNKAG--EDEKQAFLQVFVQHHHHHH 291
Score = 61.8 bits (150), Expect = 2e-10
Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 21/107 (19%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAMIGSD 85
+ + TA G +T CR +G + W ++ + + ++Y + GS+
Sbjct: 197 MPQKSFNATAERGEEMTFSCRA---SGSPEPAISWFRNGKLIEEN------EKYILKGSN 247
Query: 86 EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP 132
L + ++ D Y C+ T GE + A L V V
Sbjct: 248 ----TELTVRNIINSDGGPYVCRA-TNKAGE---DEKQAFLQVFVQH 286
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 119 bits (299), Expect = 7e-30
Identities = 43/279 (15%), Positives = 85/279 (30%), Gaps = 34/279 (12%)
Query: 475 RPTIISHRTQFGI-PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVH------ 527
P+I +++ + GDT + C P+ V W+++ + +
Sbjct: 12 PPSIHPAQSELIVEAGDTLSLTCID-----PDFVRWTFKTYFNEMVENKKNEWIQEKAEA 66
Query: 528 NDVGK--------SEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWI 579
G S + V + + + + C + + + I
Sbjct: 67 TRTGTYTCSNSNGLTSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLI 126
Query: 580 HEDSDKVVGN-----SPNLTLLMTS---DDLAGRYYCKASVMGFPEVGAEATVY----LK 627
D + + +P + + + C A G + T+ +K
Sbjct: 127 ECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIK 186
Query: 628 GRPTI-ISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIG-VGSSDDYSVLEDPL 685
P + + + GDT V C+ + W + + S
Sbjct: 187 AIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDF 246
Query: 686 KEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
+ TL I +R D GV+ C +N +GS +V LK
Sbjct: 247 NYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLK 285
Score = 93.6 bits (232), Expect = 5e-21
Identities = 30/237 (12%), Positives = 59/237 (24%), Gaps = 22/237 (9%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDV 376
G + L C W + ++ C N +
Sbjct: 26 AGDTLSLTCIDPDFVR-----WTFKTYFNEMVENKKNEWIQEKAEATRTGTYTCSNSNGL 80
Query: 377 GKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGN- 435
S + V + + + + C + + + I D + +
Sbjct: 81 TSSI---YVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDL 137
Query: 436 ----SPNLTLLMTS---DDLAGRYYCKASVMGFPEVGAEATVY----LKGRPTI-ISHRT 483
+P + + + C A G + T+ +K P + + +
Sbjct: 138 TFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETS 197
Query: 484 QFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIG-VGSSDDYSVHNDVGKSEDSETL 539
GDT V C+ + W + + S H E ETL
Sbjct: 198 HLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETL 254
Score = 78.2 bits (192), Expect = 7e-16
Identities = 34/271 (12%), Positives = 70/271 (25%), Gaps = 41/271 (15%)
Query: 33 EPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSL 92
+ G ++L C ++WT + N
Sbjct: 18 AQSELIVEAGDTLSLTCID---PDFVRWTFKTYFNEMVENKKN---------------EW 59
Query: 93 EIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIE 152
Y C S G+ + + V P + G L+ ED +
Sbjct: 60 IQEKAEATRTGTYTCSNSNGL-------TSSIYVFVRDPAKL--FLVGLPLFGKEDSDAL 110
Query: 153 LECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTF 211
+ C ++ + I ++ +++ + + + K+ +H
Sbjct: 111 VRC-PLTDPQVSQYSLIECDGKSLPTDLTF----VPNPKAGI----TIKNVKRAYHRLCV 161
Query: 212 TCQAQNTADRTYKVARLKLLVKYAPKVQVSVIG---SNRLVEGTDVRLYCKAEANPSHMK 268
C AQ + L V+ A K V S+ L +G + C + + +
Sbjct: 162 RCAAQR-DGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVN 220
Query: 269 YRWYINDQPVPAAASATELYLTNITRHQHDS 299
W + A +
Sbjct: 221 SMWLKMNPQPQHIAQVKHNSWHRGDFNYERQ 251
Score = 73.6 bits (180), Expect = 3e-14
Identities = 34/287 (11%), Positives = 71/287 (24%), Gaps = 58/287 (20%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDL-- 448
P + V+ G ++L C + W + + + + +
Sbjct: 13 PSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFNEMVENKKNEWIQEKAEATR 68
Query: 449 AGRYYCKASVMGFPEVGAEATVYLKGRPTI-ISHRTQFGIPGDTARVECSAFSIPPPEKV 507
G Y C S + + V+++ + + FG A V C + P +
Sbjct: 69 TGTYTCSNS----NGLTSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPL-TDPQVSQY 123
Query: 508 TW-SYRGEEIGVGSSDDYSVHNDV---------------------GKSEDSETLDVTYG- 544
+ G+ + + + + G S+ +
Sbjct: 124 SLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVRE 183
Query: 545 -----PRFRARPYSVQVDRGAGVNLLCDVDGNPAP-EITWIHEDSDKVVGNSPNLTLLMT 598
P S + +G ++C + W+ +
Sbjct: 184 AIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHR 243
Query: 599 SDDL----------------AGRYYCKAS-VMGFPEVGAEATVYLKG 628
D +G + C A+ G V V KG
Sbjct: 244 GDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEKG 290
Score = 70.5 bits (172), Expect = 3e-13
Identities = 25/210 (11%), Positives = 49/210 (23%), Gaps = 18/210 (8%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDK-TGVLQWTKDDF-ALGPHRNLSGFDRYAMIGSDE 86
K + S + C + D + D +L + + +
Sbjct: 93 KLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKN- 151
Query: 87 EGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVL-VPPDPPRIVQGDTLYT 145
+C + S TL V P + +T +
Sbjct: 152 ---------VKRAYHRLCVRCAAQRD---GTWLHSDKFTLKVREAIKAIPVVSVPETSHL 199
Query: 146 -TEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPK 203
+ + C + W+ + TL ++
Sbjct: 200 LKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSA 259
Query: 204 KEHHNTTFTCQAQNTADRTYKVARLKLLVK 233
+ + F C A NT LK++ K
Sbjct: 260 RVDDSGVFMCYANNTFGSANVTTTLKVVEK 289
Score = 60.1 bits (145), Expect = 7e-10
Identities = 38/301 (12%), Positives = 75/301 (24%), Gaps = 69/301 (22%)
Query: 132 PDPPRIV-QGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGR 190
P PP I L + L C + W T + +
Sbjct: 10 PSPPSIHPAQSELIVEAGDTLSLTC-IDPD----FVRW-------------TFKTYFNEM 51
Query: 191 RTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVE 250
K+ + + T+TC N + + + V+ K+ + + E
Sbjct: 52 VENKKNEWIQEKAEATRTGTYTCSNSNGLT-----SSIYVFVRDPAKLFLVGLPLFG-KE 105
Query: 251 GTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATE-----LYLTNITRHQHDSIVKCE- 304
+D + C + + +P + + + N+ R H V+C
Sbjct: 106 DSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAA 165
Query: 305 -----------VQVSVIG-------------SNRLVEGTDVRLYCKAEANPSHMKYRWYI 340
+ V S+ L +G + C + + + W
Sbjct: 166 QRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLK 225
Query: 341 NDQPVPAAASATELYLTNITRHQHDSIV--------------KCEVHNDVGKSEDSETLD 386
+ A + C +N G + + TL
Sbjct: 226 MNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLK 285
Query: 387 V 387
V
Sbjct: 286 V 286
Score = 38.9 bits (90), Expect = 0.005
Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 19/118 (16%)
Query: 629 RPTIISHRTQFGI-PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKE 687
P+I +++ + GDT + C P+ V W+++ + + E
Sbjct: 12 PPSIHPAQSELIVEAGDTLSLTCID-----PDFVRWTFKTYF-------------NEMVE 53
Query: 688 GIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFPLLLILTGVIGCVVIL 745
K+ I ++ G Y CS SN S + P K F + L L G ++
Sbjct: 54 NKKNEWIQEKAEATRTGTYTCSNSNGLTSSIYVFVRDPAKLFLVGLPLFGKEDSDALV 111
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 111 bits (279), Expect = 6e-29
Identities = 39/113 (34%), Positives = 62/113 (54%), Gaps = 1/113 (0%)
Query: 617 EVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSD 676
G+ T+ + G P I S +TQ + G+ +++C S PPP+++ WS++ + G+S
Sbjct: 2 SSGSSGTLTVNGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSG 61
Query: 677 DYSVLEDPLKEGIKSTLIIRESRHDHFG-VYNCSVSNPYGSDSVEIMLKPQKS 728
Y+V +EG+ STL I F +YNC+ N +GSD+ I LK Q S
Sbjct: 62 RYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGS 114
Score = 68.0 bits (166), Expect = 8e-14
Identities = 22/77 (28%), Positives = 40/77 (51%)
Query: 463 EVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSD 522
G+ T+ + G P I S +TQ + G+ +++C S PPP+++ WS++ + G+S
Sbjct: 2 SSGSSGTLTVNGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSG 61
Query: 523 DYSVHNDVGKSEDSETL 539
Y+V + TL
Sbjct: 62 RYTVETISTEEGVISTL 78
Score = 57.6 bits (139), Expect = 4e-10
Identities = 25/110 (22%), Positives = 39/110 (35%), Gaps = 4/110 (3%)
Query: 121 SRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVR 180
TLTV PP I T + + +++C + PP I W + S
Sbjct: 4 GSSGTLTVNGPP---IISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTS 60
Query: 181 VTEEASVDGRRTTVKSTLVLTP-KKEHHNTTFTCQAQNTADRTYKVARLK 229
V STL ++ + T + C A N+ ++ RLK
Sbjct: 61 GRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLK 110
Score = 51.4 bits (123), Expect = 6e-08
Identities = 21/98 (21%), Positives = 30/98 (30%), Gaps = 18/98 (18%)
Query: 377 GKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPE-ITWIHEDSDKVVGN 435
G S S TL V P + + G + C + P P+ I W +++ G
Sbjct: 1 GSSGSSGTLTVNGPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGT 59
Query: 436 SPNLTLLMTSD----------------DLAGRYYCKAS 457
S T+ S D Y C A
Sbjct: 60 SGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAW 97
Score = 51.4 bits (123), Expect = 6e-08
Identities = 21/98 (21%), Positives = 30/98 (30%), Gaps = 18/98 (18%)
Query: 531 GKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPE-ITWIHEDSDKVVGN 589
G S S TL V P + + G + C + P P+ I W +++ G
Sbjct: 1 GSSGSSGTLTVNGPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGT 59
Query: 590 SPNLTLLMTSD----------------DLAGRYYCKAS 611
S T+ S D Y C A
Sbjct: 60 SGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAW 97
Score = 43.7 bits (103), Expect = 3e-05
Identities = 18/106 (16%), Positives = 31/106 (29%), Gaps = 9/106 (8%)
Query: 33 EPQDQTAVVGSRVTLPCRV--IDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDY 90
Q Q A+ G + + C + + W+ + L SG I ++E
Sbjct: 19 STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLES--GTSGRYTVETISTEEGVIS 76
Query: 91 SLEIYPVMLDDDAR-YQCQVSTGILGEPAIRSRFATLTVLVPPDPP 135
+L I ++ D Y C G + L
Sbjct: 77 TLTISNIVRADFQTIYNCTAWNS-FGS---DTEIIRLKEQGSEMSG 118
Score = 37.9 bits (88), Expect = 0.002
Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 14/87 (16%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAAS--------------ATELYLTNITR 361
+ G ++ C + P + W + + + S + L ++NI R
Sbjct: 26 LHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVR 85
Query: 362 HQHDSIVKCEVHNDVGKSEDSETLDVT 388
+I C N G + L
Sbjct: 86 ADFQTIYNCTAWNSFGSDTEIIRLKEQ 112
Score = 35.3 bits (81), Expect = 0.021
Identities = 8/58 (13%), Positives = 20/58 (34%), Gaps = 2/58 (3%)
Query: 226 ARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAAS 283
+ L V P + + + + G ++ C + P + W + + + S
Sbjct: 5 SSGTLTVNGPPIISST--QTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTS 60
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 116 bits (292), Expect = 1e-28
Identities = 70/306 (22%), Positives = 105/306 (34%), Gaps = 63/306 (20%)
Query: 383 ETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHE-------DSDKVVGN 435
ET PRF P G + +C G+P P +TW + + + +
Sbjct: 1 ET--GEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFD 58
Query: 436 SPNLTLLM-----TSDDLAGRYYCKAS-VMGFPEVGAEATVYLK-----GRPTIISH-RT 483
+L T D Y C A +G V A+ TV + G P I +
Sbjct: 59 ESAGAVLRIQPLRTPRD-ENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQL 117
Query: 484 QFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDD-------------------- 523
+ TA + C+A P PE +TW + +S+
Sbjct: 118 KVVERTRTATMLCAASGNPDPE-ITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQ 176
Query: 524 --YS--VHNDVGKSEDSE---TLDVTYG-PRFRARPYSVQVDRGAGVNLLCDVDGNPAPE 575
Y N G S + V PRF P S ++ G VN+ C G+P P
Sbjct: 177 GKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPY 236
Query: 576 ITW------IHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKA-SVMGFPEVGAEATVYLKG 628
+ W + + D VG + L L D + Y C A S +G + A A + +K
Sbjct: 237 VKWMQGAEDLTPEDDMPVGRN-VLELTDVKD--SANYTCVAMSSLG--VIEAVAQITVKS 291
Query: 629 RPTIIS 634
P +
Sbjct: 292 LPKAGT 297
Score = 112 bits (283), Expect = 2e-27
Identities = 54/287 (18%), Positives = 91/287 (31%), Gaps = 49/287 (17%)
Query: 314 RLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATE---------LYLTNITRHQH 364
V G C+A +P + W + V + T L + + +
Sbjct: 17 IGVSGGVASFVCQATGDPK-PRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRD 75
Query: 365 DSIVKCEVHNDVGKSEDSETLDVTYG-------PRFRARPYSVQVDRGAGVNLLCDVDGN 417
+++ +C N VG+ L V P P V+R +LC GN
Sbjct: 76 ENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGN 135
Query: 418 PAPEITWIHEDSDKVVGNSPNLTLLMTSDDL---------AGRYYCKASVMGFPEVGAEA 468
P PEITW + S + S L G+Y C A+ + A
Sbjct: 136 PDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPA 195
Query: 469 TVYLKGR---PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEI-------- 516
+Y++ + P + +PG + C A P P V W E++
Sbjct: 196 NLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPY-VKWMQGAEDLTPEDDMPV 254
Query: 517 ------GVGSSD--DYS--VHNDVGKSEDSETLDVTYGPRFRARPYS 553
D +Y+ + +G E + V P+ + +
Sbjct: 255 GRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKAGTKHHH 301
Score = 112 bits (281), Expect = 3e-27
Identities = 63/263 (23%), Positives = 99/263 (37%), Gaps = 35/263 (13%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
+F EP+DQ V G + C+ TG + W K + R+ I
Sbjct: 8 RFIKEPKDQIGVSGGVASFVCQA---TGDPKPRVTWNKKGKKVNS-------QRFETIEF 57
Query: 85 DEEGDYSLEIYPVMLDDDA-RYQCQVSTGILGEPAIRSRFATLTVLVPPD----PPRIVQ 139
DE L I P+ D Y+C +GE + A LTVL P I
Sbjct: 58 DESAGAVLRIQPLRTPRDENVYECVAQNS-VGE---ITVHAKLTVLREDQLPSGFPNIDM 113
Query: 140 GDTLYT-TEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKS-T 197
G L R + C +A+G P EITW V + ++ +GR ++S
Sbjct: 114 GPQLKVVERTRTATMLC-AASGNPDPEITWFKDFLPV-------DPSASNGRIKQLRSGA 165
Query: 198 LVLTPKKEHHNTTFTCQAQNTADRTYKV-ARLKLLVKYAPKVQVSVIGSNRLVEGTDVRL 256
L + +E + C A N+A Y A L + V+ + S+ ++ G +V +
Sbjct: 166 LQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNI 225
Query: 257 YCKAEANPSHMKYRWYINDQPVP 279
C A +P +W + +
Sbjct: 226 TCVAVGSPM-PYVKWMQGAEDLT 247
Score = 99.5 bits (248), Expect = 6e-23
Identities = 56/304 (18%), Positives = 96/304 (31%), Gaps = 64/304 (21%)
Query: 232 VKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTN 291
+ P+ + V G C+A +P + W + V + T + +
Sbjct: 3 GEEPPRF-IKEPKDQIGVSGGVASFVCQATGDPK-PRVTWNKKGKKVNSQRFETIEFDES 60
Query: 292 I--------TRHQHDS------------IVKCEVQVSVIGSNRL---------------- 315
R D + +++V+ ++L
Sbjct: 61 AGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVV 120
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT--------ELYLTNITRHQHDSI 367
+ C A NP + W+ + PV +AS L + +
Sbjct: 121 ERTRTATMLCAASGNPDP-EITWFKDFLPVDPSASNGRIKQLRSGALQIESSEE-TDQGK 178
Query: 368 VKCEVHNDVGKSEDSE---TLDVTYG-PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEIT 423
+C N G S + V PRF P S ++ G VN+ C G+P P +
Sbjct: 179 YECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVK 238
Query: 424 W------IHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKA-SVMGFPEVGAEATVYLKGRP 476
W + + D VG + L L D + Y C A S +G + A A + +K P
Sbjct: 239 WMQGAEDLTPEDDMPVGRN-VLELTDVKD--SANYTCVAMSSLG--VIEAVAQITVKSLP 293
Query: 477 TIIS 480
+
Sbjct: 294 KAGT 297
Score = 97.2 bits (242), Expect = 4e-22
Identities = 49/217 (22%), Positives = 73/217 (33%), Gaps = 34/217 (15%)
Query: 537 ETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHE-------DSDKVVGN 589
ET PRF P G + +C G+P P +TW + + + +
Sbjct: 1 ET--GEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFD 58
Query: 590 SPNLTLLM-----TSDDLAGRYYCKAS-VMGFPEVGAEATVYLK-----GRPTIISH-RT 637
+L T D Y C A +G V A+ TV + G P I +
Sbjct: 59 ESAGAVLRIQPLRTPRD-ENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQL 117
Query: 638 QFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDD-YSVLEDPLKEGIKSTLIIR 696
+ TA + C+A P PE +TW + +S+ L L I
Sbjct: 118 KVVERTRTATMLCAASGNPDPE-ITWFKDFLPVDPSASNGRIKQLRS-------GALQIE 169
Query: 697 ESRHDHFGVYNCSVSNPYG---SDSVEIMLKPQKSFP 730
S G Y C +N G S + ++ Q P
Sbjct: 170 SSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAP 206
Score = 95.7 bits (238), Expect = 1e-21
Identities = 42/214 (19%), Positives = 68/214 (31%), Gaps = 34/214 (15%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
M PQ + T+ C +G + W KD + P + R + S
Sbjct: 110 NIDMGPQLKVVERTRTATMLCAA---SGNPDPEITWFKDFLPVDPSAS---NGRIKQLRS 163
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQG-DTL 143
+L+I D +Y+C + G S A L V V PR +
Sbjct: 164 G-----ALQIESSEETDQGKYECVATN-SAGV--RYSSPANLYVRVQNVAPRFSILPMSH 215
Query: 144 YTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPK 203
+ + C+ A G P + W+ G + + VL
Sbjct: 216 EIMPGGNVNITCV-AVGSPMPYVKWMQGAEDLTPEDDMPV------------GRNVLELT 262
Query: 204 KEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPK 237
+ +TC A ++ VA+ + VK PK
Sbjct: 263 DVKDSANYTCVAMSSLGVIEAVAQ--ITVKSLPK 294
Score = 59.5 bits (144), Expect = 2e-09
Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 19/108 (17%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVI-DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEE 87
+F++ P + G V + C + ++W + L P + +G
Sbjct: 207 RFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTP-------EDDMPVGR--- 256
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPP 135
+ + D A Y C + LG A +TV P
Sbjct: 257 ----NVLELTDVKDSANYTCVAMS-SLGV---IEAVAQITVKSLPKAG 296
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 106 bits (267), Expect = 1e-26
Identities = 35/194 (18%), Positives = 68/194 (35%), Gaps = 22/194 (11%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNP-APEITWIHEDSDKVVGNSPNLTLLMTSDDL- 602
+ P ++ G LC V G+ +I+W + +K+ N ++++ DD
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 603 -----------AGRYYCKASVMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVEC 650
AG Y C + + A V + + + Q G+ A + C
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVC 122
Query: 651 SAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSV 710
S PP + W ++G ++ + + VL + + L IR + G Y C
Sbjct: 123 DVVSSLPP-TIIWKHKGRDVILKKDVRFIVLSN-------NYLQIRGIKKTDEGTYRCEG 174
Query: 711 SNPYGSDSVEIMLK 724
+ ++
Sbjct: 175 RILARGEINFKDIQ 188
Score = 96.4 bits (240), Expect = 6e-23
Identities = 32/209 (15%), Positives = 63/209 (30%), Gaps = 26/209 (12%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVI--DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDE 86
+ + P VG C+V K + W + LS + + ++
Sbjct: 4 QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPN-----GEKLSPNQQRISVVWND 58
Query: 87 EGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQG-DTLYT 145
+ +L IY +DD Y+C V+ G + +
Sbjct: 59 DDSSTLTIYNANIDDAGIYKCVVTAE-DGT--QSEATVNVKIFQ---KLMFKNAPTPQEF 112
Query: 146 TEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRRTTVKS-TLVLTPK 203
E + + C P I W G ++ D R + + L +
Sbjct: 113 KEGEDAVIVC-DVVSSLPPTIIWKHKGRDVILKK---------DVRFIVLSNNYLQIRGI 162
Query: 204 KEHHNTTFTCQAQNTADRTYKVARLKLLV 232
K+ T+ C+ + A ++++V
Sbjct: 163 KKTDEGTYRCEGRILARGEINFKDIQVIV 191
Score = 89.5 bits (222), Expect = 2e-20
Identities = 28/153 (18%), Positives = 57/153 (37%), Gaps = 15/153 (9%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNP-APEITWIHEDSDKVVGNSPNLTLLMTSDDL- 448
+ P ++ G LC V G+ +I+W + +K+ N ++++ DD
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 449 -----------AGRYYCKASVMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVEC 496
AG Y C + + A V + + + Q G+ A + C
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVC 122
Query: 497 SAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHND 529
S PP + W ++G ++ + + V ++
Sbjct: 123 DVVSSLPP-TIIWKHKGRDVILKKDVRFIVLSN 154
Score = 79.9 bits (197), Expect = 3e-17
Identities = 31/180 (17%), Positives = 57/180 (31%), Gaps = 31/180 (17%)
Query: 314 RLVEGTDVRLYCKAEANPSHMKYRWYIND-----------QPVPAAASATELYLTNITRH 362
+ G C+ + W+ + V ++ L + N
Sbjct: 13 EISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANID 72
Query: 363 QHDS-IVKCEVHNDVG-KSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAP 420
D+ I KC V + G +SE + + + F+ P + G ++CDV + P
Sbjct: 73 --DAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPP 130
Query: 421 EITWIHEDSDKVVGNSPNLTLL----------MTSDDLAGRYYCKASVMGFPEVGAEATV 470
I W H+ D ++ +L +D G Y C+ + E
Sbjct: 131 TIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTD--EGTYRCEGRI----LARGEINF 184
Score = 71.8 bits (176), Expect = 2e-14
Identities = 26/174 (14%), Positives = 49/174 (28%), Gaps = 44/174 (25%)
Query: 489 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSV---------------------- 526
G++ C + ++W E + SV
Sbjct: 17 GESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGI 76
Query: 527 -----HNDVG-KSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH 580
+ G +SE + + + F+ P + G ++CDV + P I W H
Sbjct: 77 YKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKH 136
Query: 581 EDSDKVVGNSPNLTLL----------MTSDDLAGRYYCKASVMGFPEVGAEATV 624
+ D ++ +L +D G Y C+ + E
Sbjct: 137 KGRDVILKKDVRFIVLSNNYLQIRGIKKTD--EGTYRCEGRI----LARGEINF 184
Score = 47.9 bits (114), Expect = 3e-06
Identities = 20/181 (11%), Positives = 44/181 (24%), Gaps = 42/181 (23%)
Query: 247 RLVEGTDVRLYCKAEANPSHMKYRWYIND-----------QPVPAAASATELYLTNITRH 295
+ G C+ + W+ + V ++ L + N
Sbjct: 13 EISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANID 72
Query: 296 -----------QHDSIVKCEVQVSVIG--------SNRLV-EGTDVRLYCKAEANPSHMK 335
+ + + V V + + + EG D + C ++
Sbjct: 73 DAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLP-PT 131
Query: 336 YRWYINDQPVPAAASA-------TELYLTNITRHQHDS-IVKCEVHNDVGKSEDSETLDV 387
W + V L + I + D +CE + + + V
Sbjct: 132 IIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKK--TDEGTYRCEGRILARGEINFKDIQV 189
Query: 388 T 388
Sbjct: 190 I 190
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 109 bits (274), Expect = 2e-26
Identities = 44/284 (15%), Positives = 79/284 (27%), Gaps = 43/284 (15%)
Query: 475 RPTIISHRTQFGI-PGDTARVECSAFSIPPPEKVTWSYR-GEEIGVGSSDDYSV------ 526
P I + + PG T + C V W + S S+
Sbjct: 4 IPVIEPSVPELVVKPGATVTLRCVG-----NGSVEWDGPPSPHWTLYSDGSSSILSTNNA 58
Query: 527 ------------HNDVGKSEDSETLDVTYGPR-FRARPYSVQVDRGAGVNLLCDV-DGNP 572
D + L V R + V V L C + D
Sbjct: 59 TFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVL 118
Query: 573 APEITWIHEDSDKV-------VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVY 625
++ + + T+ + Y C A + G + +
Sbjct: 119 EAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLK 178
Query: 626 ----LKGRPTIISHRTQFGIP-GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSV 680
+ G P + + G+ A++ CSA S+ V + ++ + D+
Sbjct: 179 VQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFH- 237
Query: 681 LEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
+ TL + + H G Y+C SN G S + +
Sbjct: 238 ---NNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFR 278
Score = 88.5 bits (219), Expect = 3e-19
Identities = 35/258 (13%), Positives = 72/258 (27%), Gaps = 37/258 (14%)
Query: 33 EPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSL 92
+ G+ VTL C G ++W PH L + L
Sbjct: 10 SVPELVVKPGATVTLRCVG---NGSVEWDGPP---SPHWTLY----------SDGSSSIL 53
Query: 93 EIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIE 152
+ Y+C +P S L V P P ++ + + ED++
Sbjct: 54 STNNATFQNTGTYRCTEPG----DPLGGSAAIHLYVKDPARPWNVLAQE-VVVFEDQDAL 108
Query: 153 LECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTV--KSTLVLTPKKEHHNTT 210
L C+ + A ++ + G + + + K +
Sbjct: 109 LPCLLTDPVLEAGVSLVRVRGRPLM----------RHTNYSFSPWHGFTIHRAKFIQSQD 158
Query: 211 FTCQAQNTADRTYKVARLKLLVKYAPKVQVSVI---GSNRLVEGTDVRLYCKAEANPSHM 267
+ C A R ++L V+ ++ + G ++ C A + +
Sbjct: 159 YQCSALM-GGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNF 217
Query: 268 KYRWYINDQPVPAAASAT 285
N+ + +
Sbjct: 218 DVFLQHNNTKLAIPQQSD 235
Score = 84.6 bits (209), Expect = 7e-18
Identities = 44/293 (15%), Positives = 71/293 (24%), Gaps = 55/293 (18%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV----GNSPNLTLLMTSD 446
P + V GA V L C +G + W S G+S L+ +
Sbjct: 5 PVIEPSVPELVVKPGATVTLRCVGNG----SVEWDGPPSPHWTLYSDGSSSILSTNNATF 60
Query: 447 DLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPE 505
G Y C V RP + + A + C
Sbjct: 61 QNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEA 120
Query: 506 KVTWSYRGEEIGVGSSDDYSVHND----------------------VGKSEDSETLDVT- 542
V+ + +YS G+ S ++ +
Sbjct: 121 GVSLVRVRGRP-LMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKV 179
Query: 543 -----YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV---------- 587
P P + RG ++C ++ ++ K+
Sbjct: 180 QKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNN 239
Query: 588 GNSPNLTLL---MTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISHR 636
LTL + AG Y C AS V G + + H
Sbjct: 240 RYQKVLTLNLDQVDFQH-AGNYSCVASNVQG--KHSTSMFFRVVESAGNSHHH 289
Score = 81.5 bits (201), Expect = 7e-17
Identities = 33/213 (15%), Positives = 58/213 (27%), Gaps = 23/213 (10%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRVIDK--TGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEE 87
+ + Q+ LPC + D + + R L Y+
Sbjct: 92 WNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVR-----GRPLMRHTNYSF---SPW 143
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVL-VPPDPPRIVQGDTLYT- 145
I+ YQC G + S L V V P PP +
Sbjct: 144 H--GFTIHRAKFIQSQDYQCSALMGGRK---VMSISIRLKVQKVIPGPPALTLVPAELVR 198
Query: 146 TEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKE 205
++ C SA+ ++ T + + +++ R TL L
Sbjct: 199 IRGEAAQIVC-SASSVDVNFDVFLQHNNT---KLAIPQQSDFHNNRYQKVLTLNLDQVDF 254
Query: 206 HHNTTFTCQAQNTADRTYKVARLKLLVKYAPKV 238
H ++C A N + + V +
Sbjct: 255 QHAGNYSCVASNVQGKHSTSMFFR--VVESAGN 285
Score = 62.3 bits (151), Expect = 2e-10
Identities = 44/370 (11%), Positives = 75/370 (20%), Gaps = 105/370 (28%)
Query: 134 PPRIV-QGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRT 192
P I L + L C NG + W G + + + S
Sbjct: 4 IPVIEPSVPELVVKPGATVTLRC-VGNG----SVEW---DGPPSPHWTLYSDGSS----- 50
Query: 193 TVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGT 252
S L + T+ C L VK + + + E
Sbjct: 51 ---SILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLY--VKDPARPWNVLAQEVVVFEDQ 105
Query: 253 DVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGS 312
D L C ++ +
Sbjct: 106 DALLPCLLTDPV------------LEA-----------GVSLVRVRG------------- 129
Query: 313 NRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEV 372
H Y + + +C
Sbjct: 130 ---------------RPLMRHTNYSFSPWH----------GFTIHRAKFI-QSQDYQCSA 163
Query: 373 HNDVGKSEDSETLDVT------YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH 426
G+ S ++ + P P + RG ++C ++
Sbjct: 164 LMG-GRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQ 222
Query: 427 EDSDKVV----------GNSPNLTLL---MTSDDLAGRYYCKAS-VMGFPEVGAEATVYL 472
++ K+ LTL + AG Y C AS V G + +
Sbjct: 223 HNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQH-AGNYSCVASNVQG--KHSTSMFFRV 279
Query: 473 KGRPTIISHR 482
H
Sbjct: 280 VESAGNSHHH 289
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 105 bits (263), Expect = 5e-26
Identities = 39/193 (20%), Positives = 73/193 (37%), Gaps = 23/193 (11%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD---------KVVGNSPNLTL 595
FR + +G ++C V +PAP ++W++ + + ++ N+ NL +
Sbjct: 3 LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN-NLQI 61
Query: 596 LMTSDDLAGRYYCKASVMGFPEVG-AEATVYLKGRPTIISHRT---QFGIPGDTARVECS 651
L + G Y C+ V E+ + V + P I + G+ C
Sbjct: 62 LNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCR 121
Query: 652 AFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVS 711
A P P ++W G+ I ++ Y + + L +R + G Y C +
Sbjct: 122 ASGSPEPA-ISWFRNGKLI--EENEKYILKGS------NTELTVRNIINSDGGPYVCRAT 172
Query: 712 NPYGSDSVEIMLK 724
N G D + L+
Sbjct: 173 NKAGEDEKQAFLQ 185
Score = 96.8 bits (241), Expect = 4e-23
Identities = 41/208 (19%), Positives = 72/208 (34%), Gaps = 27/208 (12%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGSD 85
F Q G + CRV + + W + + + +R+AM+
Sbjct: 5 FREVVSPQEFKQGEDAEVVCRV---SSSPAPAVSWLYHNEEVTTISD----NRFAML--- 54
Query: 86 EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYT 145
+ +L+I + D+ Y+C+ GE I R + V VPP +
Sbjct: 55 --ANNNLQILNINKSDEGIYRCEGRVEARGE--IDFRDIIVIVNVPPAISMPQKSFNATA 110
Query: 146 TEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKE 205
E+ C A+G P I+W + N + + S + L +
Sbjct: 111 ERGEEMTFSC-RASGSPEPAISWFRNGKLIEENEKYILKGS--------NTELTVRNIIN 161
Query: 206 HHNTTFTCQAQNTADRTYKVARLKLLVK 233
+ C+A N A K A L++ V+
Sbjct: 162 SDGGPYVCRATNKAGEDEKQAFLQVFVQ 189
Score = 82.9 bits (205), Expect = 3e-18
Identities = 30/154 (19%), Positives = 58/154 (37%), Gaps = 17/154 (11%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD---------KVVGNSPNLTL 441
FR + +G ++C V +PAP ++W++ + + ++ N+ NL +
Sbjct: 3 LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN-NLQI 61
Query: 442 LMTSDDLAGRYYCKASVMGFPEVG-AEATVYLKGRPTIISHRT---QFGIPGDTARVECS 497
L + G Y C+ V E+ + V + P I + G+ C
Sbjct: 62 LNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCR 121
Query: 498 AFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVG 531
A P P ++W G+ I ++ Y +
Sbjct: 122 ASGSPEPA-ISWFRNGKLI--EENEKYILKGSNT 152
Score = 76.7 bits (189), Expect = 3e-16
Identities = 29/163 (17%), Positives = 60/163 (36%), Gaps = 24/163 (14%)
Query: 315 LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASA-------TELYLTNITRHQHDSI 367
+G D + C+ ++P+ W +++ V + L + NI + + I
Sbjct: 14 FKQGEDAEVVCRVSSSPAP-AVSWLYHNEEVTTISDNRFAMLANNNLQILNINK-SDEGI 71
Query: 368 VKCEVHNDVGKSEDSETLDVTY----GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEIT 423
+CE + D + V + ++ +RG + C G+P P I+
Sbjct: 72 YRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAIS 131
Query: 424 WIHEDSDKVVGNSPNLTLLMTSDDL---------AGRYYCKAS 457
W K++ + L ++ +L G Y C+A+
Sbjct: 132 WFRNG--KLIEENEKYILKGSNTELTVRNIINSDGGPYVCRAT 172
Score = 64.8 bits (158), Expect = 5e-12
Identities = 29/180 (16%), Positives = 56/180 (31%), Gaps = 28/180 (15%)
Query: 124 ATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVT 182
+ LT P QG+ E+ C + P ++W+
Sbjct: 1 SMLTFREVVSPQEFKQGEDA--------EVVC-RVSSSPAPAVSWLYHN---------EE 42
Query: 183 EEASVDGRRTTVKS-TLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVS 241
D R + + L + + + C+ + A + ++V P + +
Sbjct: 43 VTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMP 102
Query: 242 VIGSNRLV-EGTDVRLYCKAEANPSHMKYRWYINDQPVPA------AASATELYLTNITR 294
N G ++ C+A +P W+ N + + S TEL + NI
Sbjct: 103 QKSFNATAERGEEMTFSCRASGSPE-PAISWFRNGKLIEENEKYILKGSNTELTVRNIIN 161
Score = 56.3 bits (136), Expect = 4e-09
Identities = 20/106 (18%), Positives = 39/106 (36%), Gaps = 21/106 (19%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAMIGS 84
+ + TA G +T CR +G + W ++ + + ++Y +
Sbjct: 100 SMPQKSFNATAERGEEMTFSCRA---SGSPEPAISWFRNG------KLIEENEKYIL--- 147
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLV 130
+ + L + ++ D Y C+ T GE + A L V V
Sbjct: 148 -KGSNTELTVRNIINSDGGPYVCRA-TNKAGE---DEKQAFLQVFV 188
Score = 51.7 bits (124), Expect = 2e-07
Identities = 32/177 (18%), Positives = 56/177 (31%), Gaps = 41/177 (23%)
Query: 248 LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASA-------TELYLTNITRHQHDSI 300
+G D + C+ ++P+ W +++ V + L + NI + + I
Sbjct: 14 FKQGEDAEVVCRVSSSPAP-AVSWLYHNEEVTTISDNRFAMLANNNLQILNINK-SDEGI 71
Query: 301 VKCEVQVSVIGSN------------------------RLVEGTDVRLYCKAEANPSHMKY 336
+CE +V G G ++ C+A +P
Sbjct: 72 YRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPE-PAI 130
Query: 337 RWYINDQPVPA------AASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDV 387
W+ N + + S TEL + NI C N G+ E L V
Sbjct: 131 SWFRNGKLIEENEKYILKGSNTELTVRNIIN-SDGGPYVCRATNKAGEDEKQAFLQV 186
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 105 bits (263), Expect = 6e-26
Identities = 43/195 (22%), Positives = 74/195 (37%), Gaps = 25/195 (12%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD-----------KVVGNSPNL 593
P F SV V G+ + G P PE++W + L
Sbjct: 6 PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKL 65
Query: 594 TLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGR---PTIISH-RTQFGIPGDTARV 648
T+ + +GRY KA+ G + + A + +K P + ++ G R+
Sbjct: 66 TIPAVTKANSGRYSLKATNGSG--QATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRL 123
Query: 649 ECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC 708
+ IP P V + G EI SS D+ + ++ G +L+I E+ + G Y+
Sbjct: 124 QVRVTGIPTPV-VKFYRDGAEIQ--SSLDFQISQE----GDLYSLLIAEAYPEDSGTYSV 176
Query: 709 SVSNPYGSDSVEIML 723
+ +N G + L
Sbjct: 177 NATNSVGRATSTAEL 191
Score = 97.9 bits (244), Expect = 2e-23
Identities = 37/205 (18%), Positives = 69/205 (33%), Gaps = 25/205 (12%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
F Q + GS T + +G + W +D + +S + S
Sbjct: 7 TFTQPLQSVVVLEGSTATFEAHI---SGFPVPEVSWFRDG------QVISTSTLPGVQIS 57
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQG-DTL 143
+G L I V + RY + + G G+ + A L V PP VQ ++
Sbjct: 58 FSDGRAKLTIPAVTKANSGRYSLKATNGS-GQ---ATSTAELLVKAETAPPNFVQRLQSM 113
Query: 144 YTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPK 203
+ ++ L+ G P + + + S++ D +L++
Sbjct: 114 TVRQGSQVRLQV-RVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDL------YSLLIAEA 166
Query: 204 KEHHNTTFTCQAQNTADRTYKVARL 228
+ T++ A N+ R A L
Sbjct: 167 YPEDSGTYSVNATNSVGRATSTAEL 191
Score = 80.9 bits (200), Expect = 2e-17
Identities = 34/155 (21%), Positives = 56/155 (36%), Gaps = 21/155 (13%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD-----------KVVGNSPNL 439
P F SV V G+ + G P PE++W + L
Sbjct: 6 PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKL 65
Query: 440 TLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGR---PTIISH-RTQFGIPGDTARV 494
T+ + +GRY KA+ G + + A + +K P + ++ G R+
Sbjct: 66 TIPAVTKANSGRYSLKATNGSG--QATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRL 123
Query: 495 ECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHND 529
+ IP P V + G EI SS D+ + +
Sbjct: 124 QVRVTGIPTPV-VKFYRDGAEI--QSSLDFQISQE 155
Score = 79.4 bits (196), Expect = 6e-17
Identities = 30/165 (18%), Positives = 58/165 (35%), Gaps = 26/165 (15%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAAS----------ATELYLTNITRHQHD 365
+EG+ P + W+ + Q + + +L + +T+ +
Sbjct: 18 LEGSTATFEAHISGFPVP-EVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKA--N 74
Query: 366 S-IVKCEVHNDVGKSEDSETLDVTYG---PRFRARPYSVQVDRGAGVNLLCDVDGNPAPE 421
S + N G++ + L V P F R S+ V +G+ V L V G P P
Sbjct: 75 SGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPV 134
Query: 422 ITWIHED-----SDKVV----GNSPNLTLLMTSDDLAGRYYCKAS 457
+ + + S G+ +L + + +G Y A+
Sbjct: 135 VKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNAT 179
Score = 66.7 bits (163), Expect = 1e-12
Identities = 29/148 (19%), Positives = 58/148 (39%), Gaps = 9/148 (6%)
Query: 134 PPRIVQG-DTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRR 191
P Q ++ E E +G P E++W DG S + + + DGR
Sbjct: 5 APTFTQPLQSVVVLEGSTATFEA-HISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGR- 62
Query: 192 TTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEG 251
+ L + + ++ ++ +A N + + A L + + AP V + S + +G
Sbjct: 63 ----AKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQG 118
Query: 252 TDVRLYCKAEANPSHMKYRWYINDQPVP 279
+ VRL + P ++Y + +
Sbjct: 119 SQVRLQVRVTGIP-TPVVKFYRDGAEIQ 145
Score = 60.1 bits (146), Expect = 2e-10
Identities = 25/104 (24%), Positives = 37/104 (35%), Gaps = 19/104 (18%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAMIGS 84
F Q T GS+V L RV TG V+++ +D + + + S
Sbjct: 105 NFVQRLQSMTVRQGSQVRLQVRV---TGIPTPVVKFYRDGAEIQSS------LDFQI--S 153
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
E YSL I +D Y + +G + A L V
Sbjct: 154 QEGDLYSLLIAEAYPEDSGTYSVNATN-SVGR---ATSTAELLV 193
Score = 54.3 bits (131), Expect = 2e-08
Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 6/96 (6%)
Query: 630 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688
PT ++ + G TA E P PE V+W G+ I + +
Sbjct: 6 PTFTQPLQSVVVLEGSTATFEAHISGFPVPE-VSWFRDGQVISTSTLPGVQISF----SD 60
Query: 689 IKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
++ L I + G Y+ +N G + L
Sbjct: 61 GRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELL 96
Score = 45.1 bits (107), Expect = 3e-05
Identities = 21/181 (11%), Positives = 48/181 (26%), Gaps = 47/181 (25%)
Query: 249 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAAS----------ATELYLTNITRHQHD 298
+EG+ P + W+ + Q + + +L + +T+ +
Sbjct: 18 LEGSTATFEAHISGFPVP-EVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKA--N 74
Query: 299 S------------IVKCEVQVSVIGSN------------RLVEGTDVRLYCKAEANPSHM 334
S ++ V + +G+ VRL + P
Sbjct: 75 SGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIP-TP 133
Query: 335 KYRWYINDQPVP--------AAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLD 386
++Y + + L + + N VG++ + L
Sbjct: 134 VVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYP-EDSGTYSVNATNSVGRATSTAELL 192
Query: 387 V 387
V
Sbjct: 193 V 193
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 105 bits (264), Expect = 2e-25
Identities = 45/288 (15%), Positives = 81/288 (28%), Gaps = 51/288 (17%)
Query: 129 LVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVD 188
++P PP++V L D + + C P +E G N VT
Sbjct: 1 VLPATPPQLVSPRVL--EVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYG---- 54
Query: 189 GRRTTVKSTLVLTPKKEHHNT-TFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNR 247
+ + ++ E T TC + + + AP V ++
Sbjct: 55 --NDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNV---ILTKPE 109
Query: 248 LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQV 307
+ EGT+V + C+A +N P +L L T + C +
Sbjct: 110 VSEGTEVTVKCEAHPRAK-----VTLNGVPAQPLGPRAQLLL-KATPEDNGRSFSCSATL 163
Query: 308 SVIG--------------------------SNRLVEGTDVRLYCKAEANPSHMKYRWYIN 341
V G + E + C+A NP + + +
Sbjct: 164 EVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLP-ELKCLKD 222
Query: 342 DQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTY 389
+TR + C + G+ T++V
Sbjct: 223 GTFPLPIGE-----SVTVTRD-LEGTYLCRARSTQGEVTREVTVNVLS 264
Score = 98.6 bits (245), Expect = 5e-23
Identities = 43/251 (17%), Positives = 77/251 (30%), Gaps = 46/251 (18%)
Query: 242 VIGSNRLVEGTDVRLYCKAEANPSHMKYRWYI--NDQPVPA-------AASATELYLTNI 292
++ L T + C + + + ++ DQ + + SA
Sbjct: 9 LVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTA 68
Query: 293 TRHQHDSIVKCEVQVS--------------------VIGSNRLVEGTDVRLYCKAEANPS 332
+ C V + ++ + EGT+V + C+A
Sbjct: 69 EDEGTQRLT-CAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAK 127
Query: 333 HMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVG----KSEDSETLDVT 388
+N P +L L T + C +V + L V
Sbjct: 128 -----VTLNGVPAQPLGPRAQLLL-KATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVL 181
Query: 389 YGPRFRAR--PYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSD 446
YGPR R P + + +C GNP PE+ + + + + P + +
Sbjct: 182 YGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL----PIGESVTVTR 237
Query: 447 DLAGRYYCKAS 457
DL G Y C+A
Sbjct: 238 DLEGTYLCRAR 248
Score = 93.2 bits (231), Expect = 5e-21
Identities = 44/242 (18%), Positives = 76/242 (31%), Gaps = 40/242 (16%)
Query: 402 VDRGAGVNLLCDVDGN-PAPEITWIHEDSDKV-------VGNSPNLTLLMT---SDDLAG 450
++ ++C +DG P E D+ +S + ++ D+
Sbjct: 15 LEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQ 74
Query: 451 RYYCKASVMGFPEVGAEATVYLKGRPT-IISHRTQFGIPGDTARVECSAFSIPPPEKVTW 509
R C + TV + P + G V+C A P KVT
Sbjct: 75 RLTCAVILGN-QSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEA---HPRAKVTL 130
Query: 510 SYRGEE---------IGVGSSDD---------YSVHNDVGKSEDSETLDVTYGPRFRAR- 550
+ + + D+ V + + L V YGPR R
Sbjct: 131 NGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERD 190
Query: 551 -PYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCK 609
P + + +C GNP PE+ + + + + P + + DL G Y C+
Sbjct: 191 CPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL----PIGESVTVTRDLEGTYLCR 246
Query: 610 AS 611
A
Sbjct: 247 AR 248
Score = 90.1 bits (223), Expect = 5e-20
Identities = 39/261 (14%), Positives = 75/261 (28%), Gaps = 31/261 (11%)
Query: 309 VIGSNRLVEGTDVRLYCKAEANPSHMKYRWYI--NDQPVPA-------AASATELYLTNI 359
++ L T + C + + + ++ DQ + + SA
Sbjct: 9 LVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTA 68
Query: 360 TRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPA 419
+ C V E +T+ + P +V G V + C+ +P
Sbjct: 69 EDEGTQRLT-CAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCE--AHPR 125
Query: 420 PEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLK--GRP 476
++T + + +G L L T +D + C A+ + + T L+ P
Sbjct: 126 AKVTL-NGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGP 184
Query: 477 TIISH---RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIG-------VGSSD--DY 524
+ C A+ P PE + G V Y
Sbjct: 185 RLDERDCPGNWTWPENSQQTPMCQAWGNPLPE-LKCLKDGTFPLPIGESVTVTRDLEGTY 243
Query: 525 S--VHNDVGKSEDSETLDVTY 543
+ G+ T++V
Sbjct: 244 LCRARSTQGEVTREVTVNVLS 264
Score = 89.3 bits (221), Expect = 8e-20
Identities = 42/285 (14%), Positives = 79/285 (27%), Gaps = 49/285 (17%)
Query: 37 QTAVVGSRVTLPCRVIDK----TGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSL 92
+ V ++ T+ C + + D L P D +
Sbjct: 13 RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGN---------DSFSAKAS 63
Query: 93 EIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIE 152
+ R C V G + T+T+ P P V +E E+
Sbjct: 64 VSVTAEDEGTQRLTCAVILG----NQSQETLQTVTIYSFPAP--NVILTKPEVSEGTEVT 117
Query: 153 LECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFT 212
++C A+ + + + ++ L+L E + +F+
Sbjct: 118 VKC-EAHPRAKVTLNGVPAQPL------------------GPRAQLLLKATPEDNGRSFS 158
Query: 213 CQAQNTA--DRTYKVARLKLLVKYAPKVQVSVIGSN-RLVEGTDVRLYCKAEANPSHMKY 269
C A +K +L V Y P++ N E + C+A NP +
Sbjct: 159 CSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLP-EL 217
Query: 270 RWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNR 314
+ + +TR + C + S G
Sbjct: 218 KCLKDGTFPLPIGE-----SVTVTRD-LEGTYLCRAR-STQGEVT 255
Score = 84.7 bits (209), Expect = 3e-18
Identities = 40/279 (14%), Positives = 76/279 (27%), Gaps = 56/279 (20%)
Query: 476 PTIISHRTQFGIPGDTARVECSAFSIPPPE--KVTWSYRGEEIG---------------- 517
P ++S R V CS + P +V + + +
Sbjct: 7 PQLVSPRVL--EVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASV 64
Query: 518 ---VGSSDDY----SVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDG 570
+V E +T+ + P +V G V + C+
Sbjct: 65 SVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEA-- 122
Query: 571 NPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLK-- 627
+P ++T + + +G L L T +D + C A+ + + T L+
Sbjct: 123 HPRAKVTL-NGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVL 181
Query: 628 GRPTIISH---RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDP 684
P + C A+ P PE + G
Sbjct: 182 YGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPE-LKCLKDGTFP-------------- 226
Query: 685 LKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723
+ + +R G Y C + G + E+ +
Sbjct: 227 ----LPIGESVTVTRDLE-GTYLCRARSTQGEVTREVTV 260
Score = 74.7 bits (183), Expect = 8e-15
Identities = 28/204 (13%), Positives = 53/204 (25%), Gaps = 39/204 (19%)
Query: 25 YREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGS 84
Y + G+ VT+ C + T + P
Sbjct: 96 YSFPAPNVILTKPEVSEGTEVTVKCEA---HPRAKVTLNGVPAQP--------------- 137
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLY 144
L + D+ + C + + G+ +++ L VL P
Sbjct: 138 -LGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWT 196
Query: 145 TTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKK 204
E+ + C A G P E+ + + G TV
Sbjct: 197 WPENSQQTPMC-QAWGNPLPELKCLKDGTFPLPI----------GESVTV---------T 236
Query: 205 EHHNTTFTCQAQNTADRTYKVARL 228
T+ C+A++T + +
Sbjct: 237 RDLEGTYLCRARSTQGEVTREVTV 260
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 103 bits (258), Expect = 2e-25
Identities = 40/183 (21%), Positives = 61/183 (33%), Gaps = 19/183 (10%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD--------KVVGNSPNLTLL 596
P +V +C V+ P PEI+W + N LT+L
Sbjct: 8 PVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTIL 67
Query: 597 MTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFSI 655
D G Y C A+ V + + +K +P I I G A + C+
Sbjct: 68 SVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGN 127
Query: 656 PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYG 715
P P V+W + + +VLE +L I + + G Y C N G
Sbjct: 128 PKPS-VSWIKGDSALR--ENSRIAVLES-------GSLRIHNVQKEDAGQYRCVAKNSLG 177
Query: 716 SDS 718
+
Sbjct: 178 TAY 180
Score = 90.6 bits (225), Expect = 7e-21
Identities = 42/210 (20%), Positives = 73/210 (34%), Gaps = 34/210 (16%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
+ A+V T C V + WT++ + RY++
Sbjct: 9 VITTPLETVDALVEEVATFMCAV---ESYPQPEISWTRNKILIKLFDT-----RYSI--- 57
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQG-DTL 143
E L I V DD Y C + G+ G L V + P+I + +
Sbjct: 58 -RENGQLLTILSVEDSDDGIYCCTANNGV-GG--AVESCGALQVKM---KPKITRPPINV 110
Query: 144 YTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPK 203
E + L C + G P ++WI G + N R+ S +L +
Sbjct: 111 KIIEGLKAVLPC-TTMGNPKPSVSWIKGDSALRENSRIAVLES---------GSLRIHNV 160
Query: 204 KEHHNTTFTCQAQNTADRTY-KVARLKLLV 232
++ + C A+N+ Y K+ +L++ V
Sbjct: 161 QKEDAGQYRCVAKNSLGTAYSKLVKLEVEV 190
Score = 82.5 bits (204), Expect = 4e-18
Identities = 36/159 (22%), Positives = 58/159 (36%), Gaps = 20/159 (12%)
Query: 315 LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAA-------ASATELYLTNITRHQHDS- 366
+ C E+ P + W N + + L + ++ D
Sbjct: 19 ALVEEVATFMCAVESYPQP-EISWTRNKILIKLFDTRYSIRENGQLLTILSVEDS--DDG 75
Query: 367 IVKCEVHNDVGKS-EDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWI 425
I C +N VG + E L V P+ P +V++ G L C GNP P ++WI
Sbjct: 76 IYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWI 135
Query: 426 HEDSD-------KVVGNSPNLTLLMTSDDLAGRYYCKAS 457
DS V+ + +L + + AG+Y C A
Sbjct: 136 KGDSALRENSRIAVLESG-SLRIHNVQKEDAGQYRCVAK 173
Score = 80.9 bits (200), Expect = 1e-17
Identities = 31/148 (20%), Positives = 48/148 (32%), Gaps = 12/148 (8%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD--------KVVGNSPNLTLL 442
P +V +C V+ P PEI+W + N LT+L
Sbjct: 8 PVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTIL 67
Query: 443 MTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFSI 501
D G Y C A+ V + + +K +P I I G A + C+
Sbjct: 68 SVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGN 127
Query: 502 PPPEKVTWSYRGEEIGVGSSDDYSVHND 529
P P V+W + + +V
Sbjct: 128 PKPS-VSWIKGDSAL--RENSRIAVLES 152
Score = 66.3 bits (162), Expect = 2e-12
Identities = 29/151 (19%), Positives = 48/151 (31%), Gaps = 16/151 (10%)
Query: 132 PDPPRIVQG-DTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDG 189
P P I +T+ + C + P EI+W + + + R + +G
Sbjct: 5 PKAPVITTPLETVDALVEEVATFMC-AVESYPQPEISWTRNKILIKLFDTRYS--IRENG 61
Query: 190 RRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLV 249
L + ++ + + C A N + L VK PK+ N +
Sbjct: 62 ------QLLTILSVEDSDDGIYCCTANNGVGGAVESCGA-LQVKMKPKITRPP--INVKI 112
Query: 250 -EGTDVRLYCKAEANPSHMKYRWYINDQPVP 279
EG L C NP W D +
Sbjct: 113 IEGLKAVLPCTTMGNP-KPSVSWIKGDSALR 142
Score = 60.5 bits (147), Expect = 1e-10
Identities = 27/107 (25%), Positives = 39/107 (36%), Gaps = 21/107 (19%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAMIGS 84
K P + + G + LPC G + W K D AL + R A++
Sbjct: 102 KITRPPINVKIIEGLKAVLPCTT---MGNPKPSVSWIKGDSALREN------SRIAVL-- 150
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVP 131
SL I+ V +D +Y+C LG S+ L V V
Sbjct: 151 ---ESGSLRIHNVQKEDAGQYRCVAKN-SLGT--AYSKLVKLEVEVF 191
Score = 47.0 bits (112), Expect = 7e-06
Identities = 26/191 (13%), Positives = 52/191 (27%), Gaps = 41/191 (21%)
Query: 235 APKVQ-----VSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAA-------A 282
A K+ + + + + C E+ P + W N +
Sbjct: 1 AEKLPKAPVITTPLETVDALVEEVATFMCAVESYPQP-EISWTRNKILIKLFDTRYSIRE 59
Query: 283 SATELYLTNITRH-----------QHDSIVKCEVQVSVIG--------SNRLV-EGTDVR 322
+ L + ++ V+ + V N + EG
Sbjct: 60 NGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAV 119
Query: 323 LYCKAEANPSHMKYRWYINDQPVPAAA-----SATELYLTNITRHQHDSIVKCEVHNDVG 377
L C NP W D + + + L + N+ + + +C N +G
Sbjct: 120 LPCTTMGNP-KPSVSWIKGDSALRENSRIAVLESGSLRIHNVQK-EDAGQYRCVAKNSLG 177
Query: 378 KSEDSE-TLDV 387
+ L+V
Sbjct: 178 TAYSKLVKLEV 188
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 106 bits (265), Expect = 3e-25
Identities = 39/286 (13%), Positives = 73/286 (25%), Gaps = 43/286 (15%)
Query: 473 KGRPTIISHRTQFGI-PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYS------ 525
P I + + PG+T + C + V W +
Sbjct: 2 DPAPVIEPSGPELVVEPGETVTLRCVS-----NGSVEWDGPISPYWTLDPESPGSTLTTR 56
Query: 526 -------------VHNDVGKSEDSETLDVTYGPR-FRARPYSVQVDRGAGVNLLCDV-DG 570
D + L V + V V G L C + D
Sbjct: 57 NATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDP 116
Query: 571 NPAPEITWIHEDSD-------KVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEAT 623
++ + E + + Y CK V G
Sbjct: 117 ALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIW 176
Query: 624 VYLKGR----PTIISHRTQFGIP-GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDY 678
+ + P I ++ G+ A++ CSA + V ++ + + D+
Sbjct: 177 LKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDF 236
Query: 679 SVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
L + G+Y+C SN G+ + + +
Sbjct: 237 QDNYY----KKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQ 278
Score = 90.0 bits (223), Expect = 9e-20
Identities = 37/255 (14%), Positives = 68/255 (26%), Gaps = 35/255 (13%)
Query: 33 EPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSL 92
+ G VTL C G ++W P+ L E +L
Sbjct: 10 SGPELVVEPGETVTLRCVS---NGSVEWDGPI---SPYWTL----------DPESPGSTL 53
Query: 93 EIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIE 152
+ Y+C +P S L V P + + E +E
Sbjct: 54 TTRNATFKNTGTYRCTEL----EDPMAGSTTIHLYVKDPA-HSWNLLAQEVTVVEGQEAV 108
Query: 153 LECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTF 211
L C+ + ++ + +G V+ R ++ K + T+
Sbjct: 109 LPCLITDPALKDSVSLMREGGRQVLRKTVYF----FSPWR-----GFIIRKAKVLDSNTY 159
Query: 212 TCQAQNTADRTYKVARLKLLVKYAPKV--QVSVIGSNRLV-EGTDVRLYCKAEANPSHMK 268
C+ R + L V Q+ + S + G ++ C A
Sbjct: 160 VCKTMV-NGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFN 218
Query: 269 YRWYINDQPVPAAAS 283
D + +
Sbjct: 219 VILKRGDTKLEIPLN 233
Score = 87.7 bits (217), Expect = 5e-19
Identities = 29/210 (13%), Positives = 57/210 (27%), Gaps = 21/210 (10%)
Query: 28 QKFAMEPQDQTAVVGSRVTLPCRVIDK--TGVLQWTKDDFALGPHRNLSGFDRYAMIGSD 85
+ + Q+ T V G LPC + D + ++ + + F
Sbjct: 90 HSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFS-------- 141
Query: 86 EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV-LVPPDPPRIVQGDTLY 144
I + D Y C+ S L V V P+PP+I +
Sbjct: 142 --PWRGFIIRKAKVLDSNTYVCKTMVNGRES---TSTGIWLKVNRVHPEPPQIKLEPSKL 196
Query: 145 T-TEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPK 203
++ C + N + + G + + + + L L
Sbjct: 197 VRIRGEAAQIVCSATNAEVGFNVILKRGD----TKLEIPLNSDFQDNYYKKVRALSLNAV 252
Query: 204 KEHHNTTFTCQAQNTADRTYKVARLKLLVK 233
++C A N +++
Sbjct: 253 DFQDAGIYSCVASNDVGTRTATMNFQVVES 282
Score = 83.1 bits (205), Expect = 2e-17
Identities = 39/265 (14%), Positives = 61/265 (23%), Gaps = 48/265 (18%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPN----LTLLMTSD 446
P + V+ G V L C +G + W S + + LT +
Sbjct: 5 PVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDPESPGSTLTTRNATF 60
Query: 447 DLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPE 505
G Y C V + + + G A + C +
Sbjct: 61 KNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKD 120
Query: 506 KVTWSYRGEEI------------------GVGSSDD--YS---VHNDVGKSEDSETLDVT 542
V+ G D Y + N + L V
Sbjct: 121 SVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVN 180
Query: 543 YG----PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED------------SDKV 586
P+ + P + RG ++C + D
Sbjct: 181 RVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNY 240
Query: 587 VGNSPNLTLLMTSDDLAGRYYCKAS 611
L+L AG Y C AS
Sbjct: 241 YKKVRALSLNAVDFQDAGIYSCVAS 265
Score = 68.4 bits (167), Expect = 2e-12
Identities = 40/298 (13%), Positives = 65/298 (21%), Gaps = 62/298 (20%)
Query: 132 PDPPRIV-QGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGR 190
P I G L + L C +NG + W + ++ ++D
Sbjct: 2 DPAPVIEPSGPELVVEPGETVTLRC-VSNG----SVEW---------DGPISPYWTLDPE 47
Query: 191 RTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVE 250
STL + T+ C L VK + +VE
Sbjct: 48 SPG--STLTTRNATFKNTGTYRCTELEDPMAGSTTIHLY--VKDPAHSWNLLAQEVTVVE 103
Query: 251 GTDVRLYCKAEANPSHMKYRWYINDQPVPAAA------SATELYLTNITRHQHDSIVKCE 304
G + L C + + C+
Sbjct: 104 GQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVL-DSNTYVCK 162
Query: 305 VQVSVIGSNR-------------------------LVEGTDVRLYCKAEANPSHMKYRWY 339
V+ S + G ++ C A
Sbjct: 163 TMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILK 222
Query: 340 INDQPVPAAASATE----------LYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDV 387
D + ++ L L + Q I C NDVG + V
Sbjct: 223 RGDTKLEIPLNSDFQDNYYKKVRALSLNAVDF-QDAGIYSCVASNDVGTRTATMNFQV 279
Score = 66.9 bits (163), Expect = 5e-12
Identities = 36/269 (13%), Positives = 59/269 (21%), Gaps = 53/269 (19%)
Query: 236 PKVQVSVIGSNRLV-EGTDVRLYCKAEANPSHMKYRWYINDQPVPAA---ASATELYLTN 291
P + G +V G V L C + + W P + + L N
Sbjct: 3 PAPVIEPSGPELVVEPGETVTLRCVSNGSVE-----WDGPISPYWTLDPESPGSTLTTRN 57
Query: 292 ITR----------HQHDSIVKCEVQVSVIGSNRL----------VEGTDVRLYCKAEANP 331
T + + + V VEG + L C
Sbjct: 58 ATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPA 117
Query: 332 SHMKYRWYINDQPVPAAA------SATELYLTNITRHQHDSIVKCEVHNDVGKSEDSE-T 384
+ + C+ + +S +
Sbjct: 118 LKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVL-DSNTYVCKTMVNGRESTSTGIW 176
Query: 385 LDVTYG----PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED------------ 428
L V P+ + P + RG ++C +
Sbjct: 177 LKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDF 236
Query: 429 SDKVVGNSPNLTLLMTSDDLAGRYYCKAS 457
D L+L AG Y C AS
Sbjct: 237 QDNYYKKVRALSLNAVDFQDAGIYSCVAS 265
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 107 bits (270), Expect = 4e-25
Identities = 41/198 (20%), Positives = 69/198 (34%), Gaps = 26/198 (13%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSP------------- 591
P + + V L+CD +G P PEITW
Sbjct: 2 PHII-QLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 592 ---NLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTA 646
+L + +GRY C+A+ +G + ++ P IS+ + G+
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCEAASRIG--GHQKSMYLDIEYAPKFISNQTIYYSWEGNPI 118
Query: 647 RVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706
+ C S PP + W + ++ + G K L I + + FG Y
Sbjct: 119 NISCDVKSNPPAS-IHWRRDKLVLPAKNTTNLKTYST----GRKMILEIAPTSDNDFGRY 173
Query: 707 NCSVSNPYGSDSVEIMLK 724
NC+ +N G+ E +L
Sbjct: 174 NCTATNHIGTRFQEYILA 191
Score = 94.1 bits (234), Expect = 2e-20
Identities = 42/222 (18%), Positives = 76/222 (34%), Gaps = 23/222 (10%)
Query: 32 MEPQDQTAVVGSRVTLPCRVIDK-TGVLQWTKD-DFALGPHRNLSGFDRYAMIGSDEEGD 89
++ +++T +VTL C + + W + D + S R + G
Sbjct: 5 IQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSS- 63
Query: 90 YSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQG-DTLYTTED 148
SL I V L D RY C+ ++ I G + L + P+ + Y+ E
Sbjct: 64 -SLHIKDVKLSDSGRYDCEAASRI-GG---HQKSMYLDIE---YAPKFISNQTIYYSWEG 115
Query: 149 REIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHN 208
I + C PPA I W + + + GR+ L + P ++
Sbjct: 116 NPINISC-DVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRK----MILEIAPTSDNDF 170
Query: 209 TTFTCQAQNTADRTYKVARLKLLVKYAP----KVQVSVIGSN 246
+ C A N ++ L + P V++ +
Sbjct: 171 GRYNCTATNHIGTRFQEYILA--LADVPSSPYGVKIIELSQT 210
Score = 77.9 bits (192), Expect = 3e-15
Identities = 29/162 (17%), Positives = 53/162 (32%), Gaps = 22/162 (13%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSP------------- 437
P + + V L+CD +G P PEITW
Sbjct: 2 PHII-QLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 438 ---NLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTA 492
+L + +GRY C+A+ +G + ++ P IS+ + G+
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCEAASRIG--GHQKSMYLDIEYAPKFISNQTIYYSWEGNPI 118
Query: 493 RVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSE 534
+ C S PP + W + ++ + ++ K
Sbjct: 119 NISCDVKSNPPAS-IHWRRDKLVLPAKNTTNLKTYSTGRKMI 159
Score = 76.8 bits (189), Expect = 7e-15
Identities = 46/222 (20%), Positives = 70/222 (31%), Gaps = 44/222 (19%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATE---------------LYLTNIT 360
E V L C AE P + W L++ ++
Sbjct: 13 YENGQVTLVCDAEGEPI-PEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVK 71
Query: 361 RHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAP 420
CE + +G + S LD+ Y P+F + G +N+ CDV NP
Sbjct: 72 L-SDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPA 130
Query: 421 EITWIHEDSD-----------KVVGNSPNLTLLMTSDDLAGRYYCKA-SVMGFPEVGAEA 468
I W + G L + TSD+ GRY C A + +G E
Sbjct: 131 SIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIG--TRFQEY 188
Query: 469 TVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWS 510
+ L P P +E S + KV+++
Sbjct: 189 ILALADVP---------SSPYGVKIIELSQTTA----KVSFN 217
Score = 74.1 bits (182), Expect = 6e-14
Identities = 38/189 (20%), Positives = 69/189 (36%), Gaps = 18/189 (9%)
Query: 135 PRIVQGDTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRRTT 193
P I+Q T E+ ++ L C A G+P EITW G + + + ++ +
Sbjct: 2 PHIIQLKNETTYENGQVTLVC-DAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 194 VKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTD 253
S+L + K + + C+A + K L ++YAPK + EG
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLD--IEYAPKFISNQ-TIYYSWEGNP 117
Query: 254 VRLYCKAEANPSHMKYRWYINDQPVPAAASA----------TELYLTNITRHQHDSIVKC 303
+ + C ++NP W + +PA + L + + C
Sbjct: 118 INISCDVKSNPP-ASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSD-NDFGRYNC 175
Query: 304 EVQVSVIGS 312
+ IG+
Sbjct: 176 TAT-NHIGT 183
Score = 66.4 bits (162), Expect = 2e-11
Identities = 22/112 (19%), Positives = 37/112 (33%), Gaps = 11/112 (9%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVI-DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEE 87
KF + G+ + + C V + + W +D L + +
Sbjct: 102 KFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPA----KNTTNLKTYSTGRK 157
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQ 139
LEI P +D RY C + +G R + L + P P V+
Sbjct: 158 M--ILEIAPTSDNDFGRYNCTATN-HIGT---RFQEYILALADVPSSPYGVK 203
Score = 60.6 bits (147), Expect = 1e-09
Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 2/97 (2%)
Query: 629 RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDP-LKE 687
+P II + + + C A P P ++TW + D +
Sbjct: 1 QPHIIQLKNETTYENGQVTLVCDAEGEPIP-EITWKRAVDGFTFTEGDKSLDGRIEVKGQ 59
Query: 688 GIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
S+L I++ + G Y+C ++ G + L
Sbjct: 60 HGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLD 96
Score = 40.9 bits (96), Expect = 0.002
Identities = 33/198 (16%), Positives = 52/198 (26%), Gaps = 50/198 (25%)
Query: 249 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDS----IVKCE 304
E V L C AE P + W L + QH S I +
Sbjct: 13 YENGQVTLVCDAEGEPI-PEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVK 71
Query: 305 VQ---------VSVIGSN---------------------RLVEGTDVRLYCKAEANPSHM 334
+ S IG + EG + + C ++NP
Sbjct: 72 LSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPP-A 130
Query: 335 KYRWYINDQPVPAAASA----------TELYLTNITRHQHDSIVKCEVHNDVGKSEDSET 384
W + +PA + L + + C N +G
Sbjct: 131 SIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSD-NDFGRYNCTATNHIGTRFQEYI 189
Query: 385 LDVTYGPRFRARPYSVQV 402
L + P + PY V++
Sbjct: 190 LALADVP---SSPYGVKI 204
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 104 bits (259), Expect = 4e-25
Identities = 37/218 (16%), Positives = 65/218 (29%), Gaps = 28/218 (12%)
Query: 38 TAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGSD-------- 85
A+VG LPC + L+W + G + +
Sbjct: 15 LAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSIL 74
Query: 86 ----EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGD 141
G +L I+ V D +Y C G L V +
Sbjct: 75 RDGITAGKAALRIHNVTASDSGKYLCYFQDG----DFYEKALVELKVAALGSDLHV---- 126
Query: 142 TLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLT 201
+ +D I LEC S P +I W + G + V A G V +++++
Sbjct: 127 DVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVG-LYAVAASVIM- 184
Query: 202 PKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQ 239
+ +C +++ K A + + + Q
Sbjct: 185 --RGSSGEGVSCTIRSSLLGLEKTASISIADPFFRSAQ 220
Score = 48.5 bits (115), Expect = 3e-06
Identities = 32/203 (15%), Positives = 57/203 (28%), Gaps = 44/203 (21%)
Query: 553 SVQVDRGAGVNLLCDVDGNP---APEITWIHEDSDKVV---------------------- 587
+ G +L C + E+ W+ +VV
Sbjct: 13 PILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTS 72
Query: 588 --------GN-SPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIIS-HRT 637
G + + + SD +G+Y C F E +A V LK H
Sbjct: 73 ILRDGITAGKAALRIHNVTASD--SGKYLCYFQDGDFYE---KALVELKVAALGSDLHVD 127
Query: 638 QFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRE 697
G +EC + P ++ WS E L + +++I+R
Sbjct: 128 VKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYA-VAASVIMRG 186
Query: 698 SRHDHFGVYNCSVSNPYGSDSVE 720
S +C++ +
Sbjct: 187 SSG---EGVSCTIRSSLLGLEKT 206
Score = 43.5 bits (102), Expect = 1e-04
Identities = 26/200 (13%), Positives = 53/200 (26%), Gaps = 50/200 (25%)
Query: 304 EVQVSVIGSNRLVE---GTDVRLYCKA--EANPSHMKYRWYINDQPVP------------ 346
++Q SV+G + + G D L C + M+ +W +
Sbjct: 2 DLQFSVLGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVED 61
Query: 347 -----------------AAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTY 389
A A L + N+T C + + +++
Sbjct: 62 RQSAPYRGRTSILRDGITAGKAA-LRIHNVT-ASDSGKYLCYFQDGDFYEKA--LVELKV 117
Query: 390 GPRFRARPYSVQVDRGAGVNLLCDVDGN-PAPEITWIHEDSDKVVGNSPNLT-------- 440
V+ + G++L C G P P+I W + + + +
Sbjct: 118 AALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYA 177
Query: 441 ---LLMTSDDLAGRYYCKAS 457
++ C
Sbjct: 178 VAASVIMRGSSGEGVSCTIR 197
Score = 34.7 bits (79), Expect = 0.089
Identities = 22/108 (20%), Positives = 34/108 (31%), Gaps = 18/108 (16%)
Query: 640 GIPGDTARVECSAFSIPPPEK--VTWS-----------YRGEEIGVGSSDDY----SVLE 682
+ G+ A + C F E + W G+E+ S Y S+L
Sbjct: 16 AMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILR 75
Query: 683 DPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFP 730
D + G K+ L I G Y C + + + LK
Sbjct: 76 DGITAG-KAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGS 122
Score = 34.3 bits (78), Expect = 0.13
Identities = 26/147 (17%), Positives = 42/147 (28%), Gaps = 40/147 (27%)
Query: 399 SVQVDRGAGVNLLCDVDGNP---APEITWIHEDSDKVV---------------------- 433
+ G +L C + E+ W+ +VV
Sbjct: 13 PILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTS 72
Query: 434 --------GN-SPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIIS-HRT 483
G + + + SD +G+Y C F E +A V LK H
Sbjct: 73 ILRDGITAGKAALRIHNVTASD--SGKYLCYFQDGDFYE---KALVELKVAALGSDLHVD 127
Query: 484 QFGIPGDTARVECSAFSIPPPEKVTWS 510
G +EC + P ++ WS
Sbjct: 128 VKGYKDGGIHLECRSTGWYPQPQIQWS 154
Score = 33.5 bits (76), Expect = 0.25
Identities = 15/108 (13%), Positives = 32/108 (29%), Gaps = 14/108 (12%)
Query: 518 VGSSDD--YSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGN-PAP 574
V +SD Y + G + +++ V+ + G++L C G P P
Sbjct: 90 VTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQP 149
Query: 575 EITWIHEDSDKVVGNSPNLT-----------LLMTSDDLAGRYYCKAS 611
+I W + + + + ++ C
Sbjct: 150 QIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIR 197
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 102 bits (255), Expect = 6e-25
Identities = 38/190 (20%), Positives = 69/190 (36%), Gaps = 16/190 (8%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEIT--WIHED----SDKVVGNSPNLTLLMT 598
PR + D V L C++ + + W + + ++ +
Sbjct: 4 PRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYRINKP 63
Query: 599 SDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFSIPP 657
+ +G Y+C + A AT+ +K P I H R++ G A + C + P
Sbjct: 64 RAEDSGEYHCVYHFVS--APKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPH 121
Query: 658 PEKVTWSYRGEEI---GVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPY 714
PE W + + SS + ++ E I+ + G Y C+ +N
Sbjct: 122 PE-WMWRKKENGVFEEISNSSGRFFIINK---ENYTELNIVNLQITEDPGEYECNATNSI 177
Query: 715 GSDSVEIMLK 724
GS SV +L+
Sbjct: 178 GSASVSTVLR 187
Score = 87.6 bits (217), Expect = 7e-20
Identities = 32/211 (15%), Positives = 54/211 (25%), Gaps = 32/211 (15%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV------LQWTKDDFALGPHRNLSGFDRYAMI 82
+ + VTL C + T WTK+ L R
Sbjct: 5 RIVTSEEVIIRDSLLPVTLQCNL---TSSSHTLMYSYWTKNGVELTATRK---------- 51
Query: 83 GSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQG-D 141
+ I +D Y C P AT+ V P I
Sbjct: 52 ---NASNMEYRINKPRAEDSGEYHCVYHFV--SAP---KANATIEVKA---APDITGHKR 100
Query: 142 TLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLT 201
+ E ++ + C + G P E W V + + + ++
Sbjct: 101 SENKNEGQDAMMYC-KSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVN 159
Query: 202 PKKEHHNTTFTCQAQNTADRTYKVARLKLLV 232
+ + C A N+ L++ V
Sbjct: 160 LQITEDPGEYECNATNSIGSASVSTVLRVRV 190
Score = 83.4 bits (206), Expect = 2e-18
Identities = 29/154 (18%), Positives = 54/154 (35%), Gaps = 13/154 (8%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEIT--WIHED----SDKVVGNSPNLTLLMT 444
PR + D V L C++ + + W + + ++ +
Sbjct: 4 PRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYRINKP 63
Query: 445 SDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFSIPP 503
+ +G Y+C + A AT+ +K P I H R++ G A + C + P
Sbjct: 64 RAEDSGEYHCVYHFVS--APKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPH 121
Query: 504 PEKVTWSYRGEEI---GVGSSDDYSVHNDVGKSE 534
PE W + + SS + + N +E
Sbjct: 122 PE-WMWRKKENGVFEEISNSSGRFFIINKENYTE 154
Score = 80.7 bits (199), Expect = 2e-17
Identities = 39/178 (21%), Positives = 55/178 (30%), Gaps = 28/178 (15%)
Query: 316 VEGTDVRLYCKAEANPS-HMKYRWYINDQPVPAA---ASATELYLTNITRHQHDSIV-KC 370
V L C ++ M W N + A AS E + DS C
Sbjct: 16 DSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYRINKPRAE--DSGEYHC 73
Query: 371 EVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-- 428
H V + + T++V P S + G + C G P PE W ++
Sbjct: 74 VYHF-VSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENG 132
Query: 429 ---------SDKVVGNSPNLTLL------MTSDDLAGRYYCKAS-VMGFPEVGAEATV 470
+ N N T L +T D G Y C A+ +G V V
Sbjct: 133 VFEEISNSSGRFFIINKENYTELNIVNLQITED--PGEYECNATNSIGSASVSTVLRV 188
Score = 74.9 bits (184), Expect = 2e-15
Identities = 33/187 (17%), Positives = 56/187 (29%), Gaps = 40/187 (21%)
Query: 476 PTIISH-RTQFGIPGDTARVECSAFSIPPPE-KVTWSYRGEEIGVGSSDDYS-------- 525
P I++ ++C+ S W+ G E+ + +
Sbjct: 4 PRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYRINKP 63
Query: 526 ----------VHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPE 575
V++ V + + T++V P S + G + C G P PE
Sbjct: 64 RAEDSGEYHCVYHFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPE 123
Query: 576 ITWIHED-----------SDKVVGNSPNLTLL------MTSDDLAGRYYCKAS-VMGFPE 617
W ++ + N N T L +T D G Y C A+ +G
Sbjct: 124 WMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITED--PGEYECNATNSIGSAS 181
Query: 618 VGAEATV 624
V V
Sbjct: 182 VSTVLRV 188
Score = 59.9 bits (145), Expect = 3e-10
Identities = 29/157 (18%), Positives = 54/157 (34%), Gaps = 20/157 (12%)
Query: 133 DPPRIVQG-DTLYTTEDREIELEC-ISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDG 189
+ PRIV + + + L+C ++++ W +G V +T
Sbjct: 2 NEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNG-------VELTA-----T 49
Query: 190 RRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLV 249
R+ + + + + C + A + VK AP + S
Sbjct: 50 RKNASNMEYRINKPRAEDSGEYHCVYHFVSAPK---ANATIEVKAAPDI-TGHKRSENKN 105
Query: 250 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATE 286
EG D +YCK+ P H ++ W + V S +
Sbjct: 106 EGQDAMMYCKSVGYP-HPEWMWRKKENGVFEEISNSS 141
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 102 bits (256), Expect = 6e-25
Identities = 43/221 (19%), Positives = 72/221 (32%), Gaps = 36/221 (16%)
Query: 34 PQDQTAVVGSRVTLPCRVI--------DKTGVLQWTKDDFALGPHRNLSGFD-------- 77
+ T G V +PC + W +D ++ +
Sbjct: 7 QKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPE 66
Query: 78 ---RYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDP 134
R+ ++G ++ + SL I ++D Y +V G + + + L V +
Sbjct: 67 TQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEK 126
Query: 135 PRIVQGDTLYTTEDREIELECI---SANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRR 191
P I + L R L C S PP +W + +
Sbjct: 127 PDIHFLEPL--ESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPL------------DPE 172
Query: 192 TTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLV 232
TT S L LTP+ E H T TCQ + + ++L V
Sbjct: 173 TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV 213
Score = 41.4 bits (96), Expect = 5e-04
Identities = 31/211 (14%), Positives = 52/211 (24%), Gaps = 52/211 (24%)
Query: 551 PYSVQVDRGAGVNLLCDV-------DGNPAPEITWIHEDSDK-----VVGNSP------- 591
SV V G V + C +P + W + V N+P
Sbjct: 7 QKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPE 66
Query: 592 --------------NLTLLMT--SDDLAGRYYCKASVMG-----FPEVGAEATVYLKGRP 630
N +L + + G Y+ + + + V
Sbjct: 67 TQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEK 126
Query: 631 TIISHRTQFGIPGDTARVECSA-FSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGI 689
I G R+ CS S +T+S+ G + +
Sbjct: 127 PDIHFLEPLE-SGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTR---------- 175
Query: 690 KSTLIIRESRHDHFGVYNCSVSNPYGSDSVE 720
S L + DH C + + E
Sbjct: 176 SSELTLTPRPEDHGTNLTCQMKRQGAQVTTE 206
Score = 36.4 bits (83), Expect = 0.028
Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 8/96 (8%)
Query: 384 TLDVTYGPRFRARPYSVQVDRGAGVNLLCDV----DGNPAPEITWIHEDSDKVVGNSPN- 438
L+VT + ++ G L C + + P +W + +
Sbjct: 117 NLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTRS 176
Query: 439 --LTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYL 472
LTL +D C+ G +V E TV L
Sbjct: 177 SELTLTPRPEDHGTNLTCQMKRQGA-QVTTERTVQL 211
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 102 bits (255), Expect = 7e-25
Identities = 41/204 (20%), Positives = 78/204 (38%), Gaps = 26/204 (12%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGSD 85
+ + TA G +T CR +G + W ++ + + ++Y +
Sbjct: 7 MPQKSFNATAERGEEMTFSCRA---SGSPEPAISWFRNG------KLIEENEKYIL---- 53
Query: 86 EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYT 145
+ + L + ++ D Y C+ + GE + A L V V P I+Q T
Sbjct: 54 KGSNTELTVRNIINSDGGPYVCRATNKA-GE---DEKQAFLQVFV---QPHIIQLKNETT 106
Query: 146 TEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKK 204
E+ ++ L C A G+P EITW G + + + ++ + S+L + K
Sbjct: 107 YENGQVTLVC-DAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVK 165
Query: 205 EHHNTTFTCQAQNTADRTYKVARL 228
+ + C+A + K L
Sbjct: 166 LSDSGRYDCEAASRIGGHQKSMYL 189
Score = 100 bits (251), Expect = 2e-24
Identities = 39/190 (20%), Positives = 71/190 (37%), Gaps = 14/190 (7%)
Query: 545 PRFRA--RPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD-------KVVGNSPNLTL 595
P + ++ +RG + C G+P P I+W + G++ LT+
Sbjct: 3 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTV 62
Query: 596 LMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFS 654
+ G Y C+A+ G E +A + + +P II + + + C A
Sbjct: 63 RNIINSDGGPYVCRATNKAG--EDEKQAFLQVFVQPHIIQLKNETTYENGQVTLVCDAEG 120
Query: 655 IPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKE-GIKSTLIIRESRHDHFGVYNCSVSNP 713
P PE +TW + D +K S+L I++ + G Y+C ++
Sbjct: 121 EPIPE-ITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASR 179
Query: 714 YGSDSVEIML 723
G + L
Sbjct: 180 IGGHQKSMYL 189
Score = 79.9 bits (197), Expect = 3e-17
Identities = 41/167 (24%), Positives = 60/167 (35%), Gaps = 31/167 (18%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA------SATELYLTNITRHQHDS-IV 368
G ++ C+A +P W+ N + + S TEL + NI D
Sbjct: 17 ERGEEMTFSCRASGSPEP-AISWFRNGKLIEENEKYILKGSNTELTVRNIINS--DGGPY 73
Query: 369 KCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED 428
C N G+ E L V P + + V L+CD +G P PEITW
Sbjct: 74 VCRATNKAGEDEKQAFLQVFVQPHII-QLKNETTYENGQVTLVCDAEGEPIPEITWKRAV 132
Query: 429 SDK--------------VVGNSPNLTL----LMTSDDLAGRYYCKAS 457
V G + +L + SD +GRY C+A+
Sbjct: 133 DGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSD--SGRYDCEAA 177
Score = 78.3 bits (193), Expect = 1e-16
Identities = 33/160 (20%), Positives = 58/160 (36%), Gaps = 14/160 (8%)
Query: 391 PRFRA--RPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD-------KVVGNSPNLTL 441
P + ++ +RG + C G+P P I+W + G++ LT+
Sbjct: 3 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTV 62
Query: 442 LMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFS 500
+ G Y C+A+ G E +A + + +P II + + + C A
Sbjct: 63 RNIINSDGGPYVCRATNKAG--EDEKQAFLQVFVQPHIIQLKNETTYENGQVTLVCDAEG 120
Query: 501 IPPPEKVTWSYRGEEIGVGSSDDYSV-HNDVGKSEDSETL 539
P PE +TW + D +V S +L
Sbjct: 121 EPIPE-ITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSL 159
Score = 62.5 bits (152), Expect = 4e-11
Identities = 30/153 (19%), Positives = 46/153 (30%), Gaps = 25/153 (16%)
Query: 134 PPRIV---QGDTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDG 189
P I + E+ C A+G P I+W +G + +
Sbjct: 2 MPAISMPQKSFNATAERGEEMTFSC-RASGSPEPAISWFRNG-----------KLIEENE 49
Query: 190 RRTTVKS--TLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPK-VQVSVIGSN 246
+ S L + + C+A N A K A L+ V P +Q+ +
Sbjct: 50 KYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQ--VFVQPHIIQLK---NE 104
Query: 247 RLVEGTDVRLYCKAEANPSHMKYRWYINDQPVP 279
E V L C AE P + W
Sbjct: 105 TTYENGQVTLVCDAEGEP-IPEITWKRAVDGFT 136
Score = 54.0 bits (130), Expect = 3e-08
Identities = 34/194 (17%), Positives = 54/194 (27%), Gaps = 45/194 (23%)
Query: 235 APKVQVSVIGSNRLV-EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA------SATEL 287
P + + N G ++ C+A +P W+ N + + S TEL
Sbjct: 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEP-AISWFRNGKLIEENEKYILKGSNTEL 60
Query: 288 YLTNITRHQHDS------------IVKCEVQVSVIG--------SNRLVEGTDVRLYCKA 327
+ NI D + + + V + E V L C A
Sbjct: 61 TVRNIINS--DGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTYENGQVTLVCDA 118
Query: 328 EANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIV--------------KCEVH 373
E P + W L + QH S CE
Sbjct: 119 EGEP-IPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAA 177
Query: 374 NDVGKSEDSETLDV 387
+ +G + S LD+
Sbjct: 178 SRIGGHQKSMYLDI 191
Score = 52.5 bits (126), Expect = 1e-07
Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 12/98 (12%)
Query: 630 PTIISH---RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLK 686
P I G+ C A P P ++W G+ I ++ Y +
Sbjct: 3 PAISMPQKSFNATAERGEEMTFSCRASGSPEPA-ISWFRNGKLIE--ENEKYILKGS--- 56
Query: 687 EGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
+ L +R + G Y C +N G D + L+
Sbjct: 57 ---NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQ 91
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 105 bits (263), Expect = 7e-25
Identities = 42/295 (14%), Positives = 78/295 (26%), Gaps = 58/295 (19%)
Query: 488 PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVH-------------------- 527
+ C +TW + V + +H
Sbjct: 19 ANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYY 78
Query: 528 ----NDVGKSEDSETLDVTYGPR----FRARPYSVQVDRGAGVNLLC------DVDGNPA 573
N + + ++ L+C + N
Sbjct: 79 CVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNEL 138
Query: 574 PEITW------IHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYL 626
P++ W + D+ G L ++ ++ G Y C AS + +
Sbjct: 139 PKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEF 198
Query: 627 K-------GRPTIIS--HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVG---S 674
RP I+S + T G ++ C+ W + G I
Sbjct: 199 ITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDI-AYWKWNGSVIDEDDPVL 257
Query: 675 SDDYSVLEDPLK---EGIKSTLIIRE-SRHDHFGVYNCSVSNPYGSDSVEIMLKP 725
+DY +E+P + + L I E + + C N +G D+ I L
Sbjct: 258 GEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312
Score = 84.8 bits (209), Expect = 8e-18
Identities = 44/218 (20%), Positives = 67/218 (30%), Gaps = 30/218 (13%)
Query: 33 EPQDQTAVVGSRVTLPCRVIDKTGV-------LQWTKDDFALGPHRNLSGFDRYAMIGSD 85
Q V L C ++ LQW KD L
Sbjct: 109 AIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHF----------- 157
Query: 86 EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD--PPRIVQG--D 141
L + V Y C S LG+ +R L P IV +
Sbjct: 158 SGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANE 217
Query: 142 TLYTTEDREIELECISANGKPPAEITW------IDGTGTVMSNVRVTEEASVDGRRTTVK 195
T+ +I+L C + G+ W ID V+ + E + RR+T+
Sbjct: 218 TMEVDLGSQIQLIC-NVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLI 276
Query: 196 STLVLTP-KKEHHNTTFTCQAQNTADRTYKVARLKLLV 232
+ L ++ + + FTC A+NT +L V
Sbjct: 277 TVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYPV 314
Score = 80.5 bits (198), Expect = 2e-16
Identities = 37/263 (14%), Positives = 71/263 (26%), Gaps = 38/263 (14%)
Query: 33 EPQDQTAVVGSRVTLPCRVI--DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDY 90
E + PC + + G + W KDD ++ + I
Sbjct: 11 EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPV-----STEQASRIHQH---KE 62
Query: 91 SLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP----DPPRIVQGDTLYTT 146
L P ++D Y C V + + + + L
Sbjct: 63 KLWFVPAKVEDSGHYYCVVR-NSSYC---LRIKISAKFVENEPNLCYNAQAIFKQKLPVA 118
Query: 147 EDREIE---LECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPK 203
D + +E ++ W ++ + + + VK L++
Sbjct: 119 GDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLD---------NIHFSGVKDRLIVMNV 169
Query: 204 KEHHNTTFTCQAQNTAD-------RTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRL 256
E H +TC A T R + L+ P + + + G+ ++L
Sbjct: 170 AEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQL 229
Query: 257 YCKAEANPSHMKYRWYINDQPVP 279
C S W N +
Sbjct: 230 ICNVTGQLS-DIAYWKWNGSVID 251
Score = 71.7 bits (175), Expect = 2e-13
Identities = 43/312 (13%), Positives = 75/312 (24%), Gaps = 79/312 (25%)
Query: 394 RARPYSVQVDRGAGVNLLCDVDGNPAP-EITWIHEDSDKVVGNSPNLTLLMTSDDL---- 448
R + C ++ N ITW +DS V + + L
Sbjct: 9 REEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVP 68
Query: 449 -----AGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISHR---TQFGIPGDTARVECS-- 497
+G YYC + A + + Q + C
Sbjct: 69 AKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYM 128
Query: 498 ----AFSIPPPEKVTWSYRGEEI-----------------GVGSSD--DYS--VHNDVGK 532
+ P+ + W + + V +Y+
Sbjct: 129 EFFKNENNELPK-LQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLG 187
Query: 533 SEDSETLDV---TYGPRFRARPY-------SVQVDRGAGVNLLCDVDGNPAPEITWIHE- 581
+ T + T RP +++VD G+ + L+C+V G + W
Sbjct: 188 KQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNG 247
Query: 582 ---DSDKVVGNSPNLTLLM------------------TSDDLAGRYYCKAS-VMGFPEVG 619
D D V ++ S + C A G
Sbjct: 248 SVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGI---- 303
Query: 620 AEATVYLKGRPT 631
A + L T
Sbjct: 304 DAAYIQLIYPVT 315
Score = 69.8 bits (170), Expect = 8e-13
Identities = 46/306 (15%), Positives = 77/306 (25%), Gaps = 85/306 (27%)
Query: 249 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATE--------LYLTNITRHQHDS- 299
C N WY +D P + L+ DS
Sbjct: 18 SANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAK--VEDSG 75
Query: 300 -----------IVKCEVQVSVIGSN-------------RLVEGTDVRLYC------KAEA 329
++ ++ + + +L D L C K E
Sbjct: 76 HYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNEN 135
Query: 330 NPSHMKYRWYINDQPVPA-----AASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSET 384
N K +WY + +P+ + L + N+ H C + T
Sbjct: 136 NELP-KLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEK-HRGNYTCHASYTYLGKQYPIT 193
Query: 385 LDV---TYGPRFRARPY-------SVQVDRGAGVNLLCDVDGNPAPEITWIHE----DSD 430
+ T RP +++VD G+ + L+C+V G + W D D
Sbjct: 194 RVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDED 253
Query: 431 KVVGNSPNLTLLM------------------TSDDLAGRYYCKAS-VMGFPEVGAEATVY 471
V ++ S + C A G A +
Sbjct: 254 DPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGI----DAAYIQ 309
Query: 472 LKGRPT 477
L T
Sbjct: 310 LIYPVT 315
Score = 59.7 bits (144), Expect = 1e-09
Identities = 20/125 (16%), Positives = 36/125 (28%), Gaps = 7/125 (5%)
Query: 642 PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHD 701
+ C +TW + V + + + K L ++ +
Sbjct: 19 ANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQH------KEKLWFVPAKVE 72
Query: 702 HFGVYNCSVSNPYGSDSVEIMLKPQKSFPLLLILTGVIGCVVILVALTMVVILCQRKVKK 761
G Y C V N ++I K ++ P L I + VA ++C
Sbjct: 73 DSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGD-GGLVCPYMEFF 131
Query: 762 PPPGN 766
N
Sbjct: 132 KNENN 136
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 104 bits (261), Expect = 2e-24
Identities = 39/200 (19%), Positives = 66/200 (33%), Gaps = 26/200 (13%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKV-----VGNSPNL 593
P F+ ++ V + L+C V G+P P + W I D K G L
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 594 TLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTII------SHRTQFGIPGDTA 646
+ +DD A Y +A+ G V A++ ++ I + G+
Sbjct: 65 IIASVTDDDATVYQVRATNQGG--SVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVV 122
Query: 647 RVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706
++ P P +TW + I ++ Y V+ S + G Y
Sbjct: 123 SIKIPFSGKPDPV-ITWQKGQDLI--DNNGHYQVIVT---RSFTSLVFPNGVERKDAGFY 176
Query: 707 NCSVSNPYGSDSVEIMLKPQ 726
N +G D + L
Sbjct: 177 VVCAKNRFGIDQKTVELDVA 196
Score = 86.0 bits (213), Expect = 3e-18
Identities = 37/205 (18%), Positives = 64/205 (31%), Gaps = 20/205 (9%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDK-TGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEE 87
F E ++ S TL C+V +++W + + I +
Sbjct: 6 HFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIAD------GLKYRIQEFKG 59
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD---PPRIVQGDTLY 144
G + L I V DD YQ + + G S A+L V VP P + ++
Sbjct: 60 GYHQLIIASVTDDDATVYQVRATNQG-GS---VSGTASLEVEVPAKIHLPKTLEGMGAVH 115
Query: 145 TTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKK 204
+ ++ +GKP ITW G + +N + + +
Sbjct: 116 ALRGEVVSIKI-PFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERK--- 171
Query: 205 EHHNTTFTCQAQNTADRTYKVARLK 229
+ A+N K L
Sbjct: 172 --DAGFYVVCAKNRFGIDQKTVELD 194
Score = 74.0 bits (182), Expect = 2e-14
Identities = 39/221 (17%), Positives = 70/221 (31%), Gaps = 43/221 (19%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAAS----------ATELYLTNITRHQHD 365
++ L CK +P +WY + + A +L + ++T
Sbjct: 17 RYQSNATLVCKVTGHPK-PIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDAT 75
Query: 366 SIVKCEVHNDVGKSEDSETLDVT-----YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAP 420
N G + +L+V + P+ +V RG V++ G P P
Sbjct: 76 VYQ-VRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDP 134
Query: 421 EITW------IHEDSDKVVGNSPNLTLLMTSDDL----AGRYYCKA-SVMGFPEVGAEAT 469
ITW I + V + + T L+ + + AG Y A + G
Sbjct: 135 VITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFG--IDQKTVE 192
Query: 470 VYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWS 510
+ + P P + S S+ +TW+
Sbjct: 193 LDVADVP---------DPPRGVKVSDVSRDSV----NLTWT 220
Score = 72.1 bits (177), Expect = 1e-13
Identities = 32/157 (20%), Positives = 55/157 (35%), Gaps = 23/157 (14%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKV-----VGNSPNL 439
P F+ ++ V + L+C V G+P P + W I D K G L
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 440 TLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTII------SHRTQFGIPGDTA 492
+ +DD A Y +A+ G V A++ ++ I + G+
Sbjct: 65 IIASVTDDDATVYQVRATNQGG--SVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVV 122
Query: 493 RVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHND 529
++ P P +TW + I ++ Y V
Sbjct: 123 SIKIPFSGKPDPV-ITWQKGQDLI--DNNGHYQVIVT 156
Score = 64.8 bits (158), Expect = 3e-11
Identities = 21/152 (13%), Positives = 39/152 (25%), Gaps = 15/152 (9%)
Query: 134 PPRIVQG-DTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRR 191
P + L L C G P + W G + ++ + G
Sbjct: 4 APHFKEELRNLNVRYQSNATLVC-KVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG-- 60
Query: 192 TTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSN----R 247
L++ + T + +A N A L+ V+ K+ +
Sbjct: 61 ---YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLE--VEVPAKIHLPKTLEGMGAVH 115
Query: 248 LVEGTDVRLYCKAEANPSHMKYRWYINDQPVP 279
+ G V + P W +
Sbjct: 116 ALRGEVVSIKIPFSGKPD-PVITWQKGQDLID 146
Score = 39.7 bits (93), Expect = 0.003
Identities = 25/182 (13%), Positives = 44/182 (24%), Gaps = 44/182 (24%)
Query: 249 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAAS----------ATELYLTNITRHQHD 298
++ L CK +P +WY + + A +L + ++T
Sbjct: 17 RYQSNATLVCKVTGHPK-PIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDAT 75
Query: 299 SI----------VKCEVQVSV--------------IGSNRLVEGTDVRLYCKAEANPSHM 334
V + V +G+ + G V + P
Sbjct: 76 VYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPD-P 134
Query: 335 KYRWYINDQPVPAAA--------SATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLD 386
W + S T L N + N G + + LD
Sbjct: 135 VITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELD 194
Query: 387 VT 388
V
Sbjct: 195 VA 196
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 101 bits (252), Expect = 2e-24
Identities = 43/208 (20%), Positives = 73/208 (35%), Gaps = 19/208 (9%)
Query: 34 PQD-QTAVVGSRVTLPCRVI-DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSD-EEGDY 90
P++ T VGS V+L C + L+ + + +R ++ G
Sbjct: 8 PKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKA 67
Query: 91 SLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDRE 150
I V + D +Y+C V G + + + L E
Sbjct: 68 LFHIPSVQVRDSGQYRCLVICGAAWDYKY-------LTVKVKASYMRIDTRILEVPGTGE 120
Query: 151 IELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTT 210
++L C A G P AE++W + + ++ T +G V S L L K +
Sbjct: 121 VQLTC-QARGYPLAEVSWQNVSVPANTSHIRTP----EGLY-QVTSVLRL---KPQPSRN 171
Query: 211 FTCQAQNTADRTYKVARLKLLVKYAPKV 238
F+C N + A + L + PKV
Sbjct: 172 FSCMFWNAHMKELTSAIIDPLSRMEPKV 199
Score = 70.8 bits (173), Expect = 6e-14
Identities = 31/202 (15%), Positives = 58/202 (28%), Gaps = 36/202 (17%)
Query: 551 PYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSP----------------NLT 594
VD G+ V+L CD D E+ I KV ++
Sbjct: 9 KEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKAL 68
Query: 595 L----LMTSDDLAGRYYCKASVMGFPEVGAEATVYLKG--RPTIISHRTQFGIPGDTARV 648
+ D +G+Y C + + +K I R ++
Sbjct: 69 FHIPSVQVRD--SGQYRCLVICGAAWD---YKYLTVKVKASYMRIDTRILEVPGTGEVQL 123
Query: 649 ECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC 708
C A P E V+W + + + L + + S L ++ ++C
Sbjct: 124 TCQARGYPLAE-VSWQNVSVPA----NTSHIRTPEGLYQ-VTSVLRLKPQPS---RNFSC 174
Query: 709 SVSNPYGSDSVEIMLKPQKSFP 730
N + + ++ P
Sbjct: 175 MFWNAHMKELTSAIIDPLSRME 196
Score = 53.1 bits (127), Expect = 7e-08
Identities = 28/204 (13%), Positives = 54/204 (26%), Gaps = 33/204 (16%)
Query: 308 SVIGSNRLV---EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT------------ 352
+V + G+ V L C + + ++
Sbjct: 4 TVTAPKEVYTVDVGSSVSLECDFDRREC-TELEGIRASLQKVENDTSLQSERATLLEEQL 62
Query: 353 -----ELYLTNITRHQHDSIV-KCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGA 406
++ ++ DS +C V T+ V R ++V
Sbjct: 63 PLGKALFHIPSVQVR--DSGQYRCLVICGAAWDYKYLTVKVKASY-MRIDTRILEVPGTG 119
Query: 407 GVNLLCDVDGNPAPEITWIH---EDSDKVVGNSPNL----TLLMTSDDLAGRYYCKASVM 459
V L C G P E++W + + + L ++L + + C
Sbjct: 120 EVQLTCQARGYPLAEVSWQNVSVPANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNA 179
Query: 460 GFPEVGAEATVYLKGRPTIISHRT 483
E+ A + R RT
Sbjct: 180 HMKEL-TSAIIDPLSRMEPKVPRT 202
Score = 51.2 bits (122), Expect = 2e-07
Identities = 25/149 (16%), Positives = 39/149 (26%), Gaps = 28/149 (18%)
Query: 397 PYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSP----------------NLT 440
VD G+ V+L CD D E+ I KV ++
Sbjct: 9 KEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKAL 68
Query: 441 L----LMTSDDLAGRYYCKASVMGFPEVGAEATVYLKG--RPTIISHRTQFGIPGDTARV 494
+ D +G+Y C + + +K I R ++
Sbjct: 69 FHIPSVQVRD--SGQYRCLVICGAAWD---YKYLTVKVKASYMRIDTRILEVPGTGEVQL 123
Query: 495 ECSAFSIPPPEKVTWSYRGEEIGVGSSDD 523
C A P E V+W
Sbjct: 124 TCQARGYPLAE-VSWQNVSVPANTSHIRT 151
Score = 49.7 bits (118), Expect = 8e-07
Identities = 30/192 (15%), Positives = 56/192 (29%), Gaps = 30/192 (15%)
Query: 127 TVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEAS 186
TV P + + G + + LEC + + E+ I + + N +
Sbjct: 4 TVTAPKEVYTVDVGSS--------VSLEC-DFDRRECTELEGIRASLQKVENDT----SL 50
Query: 187 VDGRRTTVKS-------TLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQ 239
R T ++ + + + + C A YK +K+ Y
Sbjct: 51 QSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMR--- 107
Query: 240 VSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNIT-----R 294
+ +V+L C+A P + W P + T L +T +
Sbjct: 108 -IDTRILEVPGTGEVQLTCQARGYP-LAEVSWQNVSVPANTSHIRTPEGLYQVTSVLRLK 165
Query: 295 HQHDSIVKCEVQ 306
Q C
Sbjct: 166 PQPSRNFSCMFW 177
Score = 42.0 bits (98), Expect = 3e-04
Identities = 27/188 (14%), Positives = 46/188 (24%), Gaps = 41/188 (21%)
Query: 489 GDTARVECSAFSIPPPE----KVTWSYRGEEI------------------------GVGS 520
G + +EC E + + + V
Sbjct: 17 GSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQV 76
Query: 521 SDD--YS--VHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEI 576
D Y V T+ V R ++V V L C G P E+
Sbjct: 77 RDSGQYRCLVICGAAWDYKYLTVKVKASY-MRIDTRILEVPGTGEVQLTCQARGYPLAEV 135
Query: 577 TWIH---EDSDKVVGNSPNL----TLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGR 629
+W + + + L ++L + + C E+ A + R
Sbjct: 136 SWQNVSVPANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKEL-TSAIIDPLSR 194
Query: 630 PTIISHRT 637
RT
Sbjct: 195 MEPKVPRT 202
Score = 32.3 bits (73), Expect = 0.55
Identities = 15/118 (12%), Positives = 28/118 (23%), Gaps = 21/118 (17%)
Query: 24 QYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRY 79
+ + ++ + V L C+ G + W
Sbjct: 100 KVKASYMRIDTRILEVPGTGEVQLTCQA---RGYPLAEVSWQNVSVPANTSHIR------ 150
Query: 80 AMIGSDEEGDYSLEIYPVMLDDDAR-YQCQVSTGILGEPAIRSRFATLTVLVPPDPPR 136
EG Y + + +R + C + E S + P PR
Sbjct: 151 -----TPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELT--SAIIDPLSRMEPKVPR 201
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 101 bits (253), Expect = 2e-24
Identities = 43/219 (19%), Positives = 66/219 (30%), Gaps = 35/219 (15%)
Query: 531 GKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNS 590
+ V G + P S V G V L C G+P + W + + GN+
Sbjct: 5 HHHHHHSSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNT 64
Query: 591 PNLTLLMTSDDLAGRYYCKAS--------------VMGFPEVGAEATVYLKGRPTIISH- 635
L AG Y C+ + V PE + + I
Sbjct: 65 SELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVE 124
Query: 636 -RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLI 694
+Q +PG T ++C A P P W + + K +
Sbjct: 125 PTSQKLMPGSTLVLQCVAVGSPIPH-YQWFKNELPLTHET---------------KKLYM 168
Query: 695 IRESRHDHFGVYNCSVSNPYG---SDSVEIMLKPQKSFP 730
+ +H G Y C V N S VEI++ +
Sbjct: 169 VPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLG 207
Score = 90.3 bits (224), Expect = 2e-20
Identities = 38/211 (18%), Positives = 60/211 (28%), Gaps = 32/211 (15%)
Query: 377 GKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNS 436
+ V G + P S V G V L C G+P + W + + GN+
Sbjct: 5 HHHHHHSSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNT 64
Query: 437 PNLTLLMTSDDLAGRYYCKAS--------------VMGFPEVGAEATVYLKGRPTIISH- 481
L AG Y C+ + V PE + + I
Sbjct: 65 SELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVE 124
Query: 482 -RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIG-----------VGSSDD--YS-- 525
+Q +PG T ++C A P P W + V Y
Sbjct: 125 PTSQKLMPGSTLVLQCVAVGSPIPH-YQWFKNELPLTHETKKLYMVPYVDLEHQGTYWCH 183
Query: 526 VHNDVGKSEDSETLDVTYGPRFRARPYSVQV 556
V+ND + + + P + +
Sbjct: 184 VYNDRDSQDSKKVEIIIDELNNLGHPDNKEQ 214
Score = 83.0 bits (205), Expect = 5e-18
Identities = 30/158 (18%), Positives = 56/158 (35%), Gaps = 21/158 (13%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIV-KCEVHND 375
G V+L C+A +P ++Y+W+ ++ +P ++ L + D+ C V+N+
Sbjct: 32 AGQFVKLCCRATGHPF-VQYQWFKMNKEIPNGNTSE-LIFNAVHVK--DAGFYVCRVNNN 87
Query: 376 VGKSEDSE-TLDVTYGP---------------RFRARPYSVQVDRGAGVNLLCDVDGNPA 419
LDV P + P S ++ G+ + L C G+P
Sbjct: 88 FTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPI 147
Query: 420 PEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS 457
P W + + + G Y+C
Sbjct: 148 PHYQWFKNELPLTHETKKLYMVPYVDLEHQGTYWCHVY 185
Score = 78.4 bits (193), Expect = 2e-16
Identities = 34/228 (14%), Positives = 63/228 (27%), Gaps = 59/228 (25%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAMIGS 84
K + P+ + + G V L CR TG QW K + +
Sbjct: 20 KITVNPESKAVLAGQFVKLCCRA---TGHPFVQYQWFKMNKEI----------------- 59
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD----------- 133
L V + D Y C+V+ S+++ L V P+
Sbjct: 60 PNGNTSELIFNAVHVKDAGFYVCRVNNN-FTF--EFSQWSQLDVCDIPESFQRSVDGVSE 116
Query: 134 -PPRIVQG-DTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGR 190
+I + + L+C A G P W + + + +
Sbjct: 117 SKLQICVEPTSQKLMPGSTLVLQC-VAVGSPIPHYQWFKNE-----------LPLTHETK 164
Query: 191 RTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKV 238
+ ++ H T+ C N D +++ +
Sbjct: 165 K-----LYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVE-IIIDELNNL 206
Score = 76.5 bits (188), Expect = 8e-16
Identities = 29/178 (16%), Positives = 54/178 (30%), Gaps = 33/178 (18%)
Query: 466 AEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSS--- 521
++ + I + ++ + G ++ C A P + W +EI G++
Sbjct: 9 HHSSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQ-YQWFKMNKEIPNGNTSEL 67
Query: 522 -------DD---YS--VHNDVGKSEDSE-TLDVTYGP---------------RFRARPYS 553
D Y V+N+ LDV P + P S
Sbjct: 68 IFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTS 127
Query: 554 VQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS 611
++ G+ + L C G+P P W + + + G Y+C
Sbjct: 128 QKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQGTYWCHVY 185
Score = 69.1 bits (169), Expect = 3e-13
Identities = 34/217 (15%), Positives = 71/217 (32%), Gaps = 43/217 (19%)
Query: 222 TYKVARLKLLVKYAPKVQVSVIGSNRLV-EGTDVRLYCKAEANPSHMKYRWYINDQPVPA 280
+ LV K+ V+ ++ V G V+L C+A +P ++Y+W+ ++ +P
Sbjct: 5 HHHHHHSSGLVPRGSKITVNP--ESKAVLAGQFVKLCCRATGHPF-VQYQWFKMNKEIPN 61
Query: 281 AASATELYLTNITRHQ-----------HDSIVKCEVQVSVIG------------------ 311
++ L + Q+ V
Sbjct: 62 GNTSE-LIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQ 120
Query: 312 ------SNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHD 365
S +L+ G+ + L C A +P Y+W+ N+ P+ + + +H
Sbjct: 121 ICVEPTSQKLMPGSTLVLQCVAVGSPIP-HYQWFKNELPLTHETKKL-YMVPYVDL-EHQ 177
Query: 366 SIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQV 402
C V+ND + + + P + +
Sbjct: 178 GTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPDNKEQ 214
Score = 64.9 bits (158), Expect = 7e-12
Identities = 29/190 (15%), Positives = 55/190 (28%), Gaps = 35/190 (18%)
Query: 121 SRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNV 179
+ LVP V ++ + ++L C A G P + W
Sbjct: 6 HHHHHSSGLVPRGSKITVNPESKAVLAGQFVKLCC-RATGHPFVQYQWFKMNK------- 57
Query: 180 RVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQ 239
+ T S L+ + C+ N + +L V P+
Sbjct: 58 ------EIPNGNT---SELIFNAVHVKDAGFYVCRVNNNFTFEFS-QWSQLDVCDIPESF 107
Query: 240 VSVIG--------------SNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT 285
+ S +L+ G+ + L C A +P Y+W+ N+ P+
Sbjct: 108 QRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIP-HYQWFKNELPLTHETKKL 166
Query: 286 ELYLTNITRH 295
+ +
Sbjct: 167 -YMVPYVDLE 175
Score = 56.8 bits (137), Expect = 4e-09
Identities = 19/112 (16%), Positives = 31/112 (27%), Gaps = 27/112 (24%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
+ +EP Q + GS + L C G QW K++ L
Sbjct: 120 QICVEPTSQKLMPGSTLVLQCVA---VGSPIPHYQWFKNELPLTH--------------- 161
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPR 136
E + V L+ Y C V S+ + + +
Sbjct: 162 --ETKKLYMVPYVDLEHQGTYWCHVYND-RDS--QDSKKVEIIIDELNNLGH 208
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 100 bits (250), Expect = 2e-24
Identities = 37/183 (20%), Positives = 62/183 (33%), Gaps = 18/183 (9%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH-----EDSDKVV----GNSPNLTL 595
+ V++ G C G P + + +VV G LT+
Sbjct: 3 LQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTI 62
Query: 596 LMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFS 654
+ + AG Y C+A+ A + + + T Q G+ A V C S
Sbjct: 63 YNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSS 122
Query: 655 IPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPY 714
P P V+W Y EE+ S + +++L + + L I G+Y C
Sbjct: 123 SPAPA-VSWLYHNEEVTTISDNRFAMLAN-------NNLQILNINKSDEGIYRCEGRVEA 174
Query: 715 GSD 717
+
Sbjct: 175 RGE 177
Score = 92.9 bits (231), Expect = 1e-21
Identities = 26/211 (12%), Positives = 57/211 (27%), Gaps = 32/211 (15%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAMIGS 84
+ + VG C G + + + R +
Sbjct: 4 QVTISLSKVELSVGESKFFTCTA---IGEPESIDWYNPQGEKIIST------QRVVV--Q 52
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQG-DTL 143
E L IY ++D Y+CQ + G+ + L + +
Sbjct: 53 KEGVRSRLTIYNANIEDAGIYRCQATDAK-GQ--TQEATVVLEIYQKLT---FREVVSPQ 106
Query: 144 YTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKS-TLVLTP 202
+ + E+ C + P ++W+ V D R + + L +
Sbjct: 107 EFKQGEDAEVVC-RVSSSPAPAVSWLYHNEEV--------TTISDNRFAMLANNNLQILN 157
Query: 203 KKEHHNTTFTCQAQNTADRTYKVARLKLLVK 233
+ + C+ + A + ++V
Sbjct: 158 INKSDEGIYRCEGRVEARGEIDFRDIIVIVN 188
Score = 83.3 bits (206), Expect = 2e-18
Identities = 31/149 (20%), Positives = 53/149 (35%), Gaps = 11/149 (7%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH-----EDSDKVV----GNSPNLTL 441
+ V++ G C G P + + +VV G LT+
Sbjct: 3 LQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTI 62
Query: 442 LMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFS 500
+ + AG Y C+A+ A + + + T Q G+ A V C S
Sbjct: 63 YNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSS 122
Query: 501 IPPPEKVTWSYRGEEIGVGSSDDYSVHND 529
P P V+W Y EE+ S + +++ +
Sbjct: 123 SPAPA-VSWLYHNEEVTTISDNRFAMLAN 150
Score = 81.0 bits (200), Expect = 1e-17
Identities = 29/174 (16%), Positives = 59/174 (33%), Gaps = 25/174 (14%)
Query: 315 LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA--------SATELYLTNITRHQHDS 366
L G C A P + + + + + + L + N +
Sbjct: 14 LSVGESKFFTCTAIGEPESI-DWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANI-EDAG 71
Query: 367 IVKCEVHNDVGK-SEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWI 425
I +C+ + G+ E + L++ FR + +G ++C V +PAP ++W+
Sbjct: 72 IYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWL 131
Query: 426 HEDSDKVVGNSPNLTLL---------MTSDDLAGRYYCKASVMGFPEVGAEATV 470
+ + + + +L + D G Y C+ V E E
Sbjct: 132 YHNEEVTTISDNRFAMLANNNLQILNINKSD-EGIYRCEGRV----EARGEIDF 180
Score = 74.8 bits (184), Expect = 2e-15
Identities = 30/186 (16%), Positives = 59/186 (31%), Gaps = 45/186 (24%)
Query: 476 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKS- 533
+ G++ C+A P ++ +GE+I S+ V + +S
Sbjct: 3 LQVTISLSKVELSVGESKFFTCTAIGEPESI-DWYNPQGEKII--STQRVVVQKEGVRSR 59
Query: 534 --------EDS------------------ETLDVTYGPRFRARPYSVQVDRGAGVNLLCD 567
ED+ L++ FR + +G ++C
Sbjct: 60 LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCR 119
Query: 568 VDGNPAPEITWIHEDSDKVVGNSPNLTLL---------MTSDDLAGRYYCKASVMGFPEV 618
V +PAP ++W++ + + + +L + D G Y C+ V E
Sbjct: 120 VSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSD-EGIYRCEGRV----EA 174
Query: 619 GAEATV 624
E
Sbjct: 175 RGEIDF 180
Score = 67.1 bits (164), Expect = 8e-13
Identities = 26/160 (16%), Positives = 54/160 (33%), Gaps = 18/160 (11%)
Query: 124 ATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTE 183
A L V + + G++ + C A G+P + + ++S RV
Sbjct: 1 ALLQVTISLSKVELSVGESKF--------FTCT-AIGEPESIDWYNPQGEKIISTQRVVV 51
Query: 184 EASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVI 243
+ S L + + CQA + +T + A + L + V+
Sbjct: 52 QKEGVR------SRLTIYNANIEDAGIYRCQATDAKGQTQE-ATVVLEIYQKLTF-REVV 103
Query: 244 GSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAAS 283
+G D + C+ ++P W +++ V +
Sbjct: 104 SPQEFKQGEDAEVVCRVSSSP-APAVSWLYHNEEVTTISD 142
Score = 54.8 bits (132), Expect = 2e-08
Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 8/90 (8%)
Query: 630 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688
+ G++ C+A P ++ +GE+I S+ V ++ G
Sbjct: 3 LQVTISLSKVELSVGESKFFTCTAIGEPESI-DWYNPQGEKII--STQRVVVQKE----G 55
Query: 689 IKSTLIIRESRHDHFGVYNCSVSNPYGSDS 718
++S L I + + G+Y C ++ G
Sbjct: 56 VRSRLTIYNANIEDAGIYRCQATDAKGQTQ 85
Score = 46.7 bits (111), Expect = 7e-06
Identities = 24/177 (13%), Positives = 49/177 (27%), Gaps = 40/177 (22%)
Query: 248 LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA--------SATELYLTNITRH---- 295
L G C A P + + + + + + L + N
Sbjct: 14 LSVGESKFFTCTAIGEPESI-DWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGI 72
Query: 296 -------QHDSIVKCEVQVSVIG--------SNRLV-EGTDVRLYCKAEANPSHMKYRWY 339
+ V + + S + +G D + C+ ++P W
Sbjct: 73 YRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSP-APAVSWL 131
Query: 340 INDQPVPAAASA-------TELYLTNITRHQHDS-IVKCEVHNDVGKSEDSETLDVT 388
+++ V + L + NI + D I +CE + D + V
Sbjct: 132 YHNEEVTTISDNRFAMLANNNLQILNINK--SDEGIYRCEGRVEARGEIDFRDIIVI 186
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 103 bits (259), Expect = 3e-24
Identities = 49/311 (15%), Positives = 87/311 (27%), Gaps = 68/311 (21%)
Query: 476 PTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEI------------------G 517
P + + + ++C +I + W EI
Sbjct: 8 PHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITE 67
Query: 518 VGSSDD--YSV--HNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDG--- 570
D Y V +D GK + L + + +G
Sbjct: 68 FSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQL 127
Query: 571 -------NPAPEITWIHED-----SDKV----VGNSPNLTLLMTSDDLAGRYYCKA---- 610
++ W H SD+V G L + + + G+Y +
Sbjct: 128 YSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGK 187
Query: 611 ---------SVMGFPEVGAE------ATVYLKGRPTIISH--RTQFGIPGDTARVECSAF 653
S + E AE A + K R ++ G + C+ +
Sbjct: 188 TGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVW 247
Query: 654 SIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNP 713
PPPE V+W + + S D ++ + G + I G Y V N
Sbjct: 248 GDPPPE-VSWLKNEKALA--SDDHCNLKFEA---GRTAYFTINGVSTADSGKYGLVVKNK 301
Query: 714 YGSDSVEIMLK 724
YGS++ + +
Sbjct: 302 YGSETSDFTVS 312
Score = 93.4 bits (232), Expect = 1e-20
Identities = 39/276 (14%), Positives = 79/276 (28%), Gaps = 50/276 (18%)
Query: 32 MEPQDQTAVVGSRVTLPCRV--IDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGD 89
+E V L C+V I K + W KD+ + +++ ++G
Sbjct: 11 VEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVD------EKHDF----KDGI 60
Query: 90 YSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDR 149
+L I D Y+ + G+ L + V + D
Sbjct: 61 CTLLITEFSKKDAGIYEVILKDD-RGK---DKSRLKLVDEAFKELMMEVCKKIALSATDL 116
Query: 150 EIE-------LECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRRTTVKSTLVLT 201
+I+ L ++ W +G+ + + RV V G + L +
Sbjct: 117 KIQSTAEGIQLYSFVTYYVEDLKVNWSHNGS-AIRYSDRVK--TGVTGEQ----IWLQIN 169
Query: 202 PKKEHHNTTFTCQAQNTADRTYKVARLK------------------LLVKYAPKVQVSVI 243
+ + + + K L + K +V +
Sbjct: 170 EPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLP 229
Query: 244 GSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVP 279
+ EG + L C +P + W N++ +
Sbjct: 230 DVVTIQEGKALNLTCNVWGDPP-PEVSWLKNEKALA 264
Score = 88.4 bits (219), Expect = 4e-19
Identities = 39/208 (18%), Positives = 63/208 (30%), Gaps = 30/208 (14%)
Query: 539 LDVTYGPRFRARPYSVQVDRGAGVNLLCDVDG-NPAPEITWIHED-----SDKVVGNSPN 592
+D GP F S +V V L C V I W ++ +K
Sbjct: 2 IDPFTGPHF-VEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGI 60
Query: 593 LTLL---MTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTAR 647
TLL + D AG Y G + + + + ++ + + +
Sbjct: 61 CTLLITEFSKKD-AGIYEVILKDDRG--KDKSRLKLVDEAFKELMMEVCKKIALSATDLK 117
Query: 648 VECSAFSIP---------PPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRES 698
++ +A I KV WS+ G I SD G + L I E
Sbjct: 118 IQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIR--YSDRVKTGVT----GEQIWLQINEP 171
Query: 699 RHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726
+ G Y + + + L Q
Sbjct: 172 TPNDKGKYVMELFDGKTGHQKTVDLSGQ 199
Score = 81.1 bits (200), Expect = 1e-16
Identities = 49/369 (13%), Positives = 100/369 (27%), Gaps = 115/369 (31%)
Query: 131 PPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGR 190
P P V+ + T + + L+C AN K I W + + + + +
Sbjct: 4 PFTGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGI--- 60
Query: 191 RTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVE 250
TL++T + + ++ + +RLKL+ + ++
Sbjct: 61 -----CTLLITEFSKKDAGIYEVILKDDRGKDK--SRLKLVDEAFKEL------------ 101
Query: 251 GTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVI 310
+ + A SAT+L +
Sbjct: 102 ----------------------MMEVCKKIALSATDLKIQ-------------------- 119
Query: 311 GSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAA--------ASATELYLTNITRH 362
++LY +K W N + + L + T
Sbjct: 120 -----STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPT-- 172
Query: 363 QHDS-IVKCEVHNDVGKSEDSETLDV---------------------TYGPRFRARPYSV 400
+D E+ + + + L P V
Sbjct: 173 PNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVV 232
Query: 401 QVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDL------------ 448
+ G +NL C+V G+P PE++W+ +K + + + L +
Sbjct: 233 TIQEGKALNLTCNVWGDPPPEVSWLKN--EKALASDDHCNLKFEAGRTAYFTINGVSTAD 290
Query: 449 AGRYYCKAS 457
+G+Y
Sbjct: 291 SGKYGLVVK 299
Score = 68.4 bits (167), Expect = 2e-12
Identities = 26/247 (10%), Positives = 64/247 (25%), Gaps = 48/247 (19%)
Query: 16 ALSMGSLAQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGV-----------LQWTKDD 64
S L ++ ME + A+ + + + + W+ +
Sbjct: 87 DKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNG 146
Query: 65 FALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFA 124
A+ DR L+I +D +Y ++ G +
Sbjct: 147 SAIRYS------DRVKT--GVTGEQIWLQINEPTPNDKGKYVMELFDGK-TG---HQKTV 194
Query: 125 TLTVLVPPD------------------PPRIVQG-DTLYTTEDREIELECISANGKPPAE 165
L+ + + D + E + + L C + G PP E
Sbjct: 195 DLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTC-NVWGDPPPE 253
Query: 166 ITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKV 225
++W+ + S+ + + + + + +N
Sbjct: 254 VSWLKNEKALASDDHCNLKFEAGR-----TAYFTINGVSTADSGKYGLVVKNKYGSETSD 308
Query: 226 ARLKLLV 232
+ + +
Sbjct: 309 FTVSVFI 315
Score = 59.2 bits (143), Expect = 2e-09
Identities = 16/139 (11%), Positives = 37/139 (26%), Gaps = 12/139 (8%)
Query: 630 PTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGI 689
P + + + ++C +I + W EI + + +
Sbjct: 8 PHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREIS--VDEKHDFKDG------ 59
Query: 690 KSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML----KPQKSFPLLLILTGVIGCVVIL 745
TL+I E G+Y + + G D + L + + + + I
Sbjct: 60 ICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQ 119
Query: 746 VALTMVVILCQRKVKKPPP 764
+ +
Sbjct: 120 STAEGIQLYSFVTYYVEDL 138
Score = 58.4 bits (141), Expect = 4e-09
Identities = 22/112 (19%), Positives = 36/112 (32%), Gaps = 18/112 (16%)
Query: 24 QYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRY 79
+ R + P T G + L C V G + W K++ AL D +
Sbjct: 219 KNRARVLGGLPDVVTIQEGKALNLTCNV---WGDPPPEVSWLKNEKALAS-------DDH 268
Query: 80 AMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVP 131
+ + I V D +Y V G + T++V +P
Sbjct: 269 CNLKFEAGRTAYFTINGVSTADSGKYGLVVKN-KYGS---ETSDFTVSVFIP 316
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 104 bits (260), Expect = 3e-24
Identities = 53/431 (12%), Positives = 104/431 (24%), Gaps = 98/431 (22%)
Query: 38 TAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSD---------EE 87
G V L C K+ W + S + +D ++
Sbjct: 5 LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 64
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTE 147
G++ L I + ++D Y C+V + + D ++QG +L
Sbjct: 65 GNFPLIIKNLKIEDSDTYICEVED-----QKEEVQLLVFGLTANSDTH-LLQGQSL---- 114
Query: 148 DREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHH 207
L + + G + TL ++ +
Sbjct: 115 ----TLTL-ESPPGSSPSVQCRSPRGKNIQG----------------GKTLSVSQLELQD 153
Query: 208 NTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHM 267
+ T+TC ++ ++ ++V K V L E
Sbjct: 154 SGTWTCTVLQ--NQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSG 211
Query: 268 KYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKA 327
+ W + +L ++ + K ++ +
Sbjct: 212 ELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLH--------------- 256
Query: 328 EANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDS-IVKCEVHNDVGKSEDSETLD 386
L L S + + GK L
Sbjct: 257 --------------------------LTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLV 290
Query: 387 VTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSD 446
V NL C+V G +P++ + +K S + +
Sbjct: 291 VMRAT-------------QLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKAVWVLN 337
Query: 447 DLAGRYYCKAS 457
AG + C S
Sbjct: 338 PEAGMWQCLLS 348
Score = 91.4 bits (226), Expect = 9e-20
Identities = 43/353 (12%), Positives = 95/353 (26%), Gaps = 68/353 (19%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVK------ 369
+G V L C A S +++ W ++Q + L + +
Sbjct: 7 KKGDTVELTCTASQKKS-IQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQG 65
Query: 370 ------------------CEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLL 411
CEV + + + +T + +G + L
Sbjct: 66 NFPLIIKNLKIEDSDTYICEVEDQKEEVQ-LLVFGLTANS-------DTHLLQGQSLTLT 117
Query: 412 CDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS-------------V 458
+ +P + K + L++ +G + C V
Sbjct: 118 LESPPGSSPSVQCRSPRG-KNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVV 176
Query: 459 MGFPEVGAEATVYLKGRPTIISHRTQFGI--PGDTARVECSAFSIPPPE----------K 506
+ F + + +G S F + + + A + +
Sbjct: 177 LAFQKASSIVYK-KEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKE 235
Query: 507 VTWSYRGEEIGVGSSDDYSVHNDVGKSEDSE--------TLDVTYGPRFRARPYSVQVDR 558
V+ ++ + +H + ++ L+ G + V
Sbjct: 236 VSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRAT 295
Query: 559 GAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS 611
NL C+V G +P++ + +K S + + AG + C S
Sbjct: 296 QLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKAVWVLNPEAGMWQCLLS 348
Score = 83.7 bits (206), Expect = 3e-17
Identities = 40/344 (11%), Positives = 91/344 (26%), Gaps = 70/344 (20%)
Query: 400 VQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVM 459
V +G V L C + + W + + K++GN G + K
Sbjct: 4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQ-------------GSFLTKGPSK 50
Query: 460 GFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVG 519
+ +++ +G +I + D+ C
Sbjct: 51 LNDRADSRRSLWDQGNFPLIIKNLK---IEDSDTYICEV--------------------- 86
Query: 520 SSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWI 579
+ + + +T + +G + L + +P +
Sbjct: 87 -------EDQKEEVQ-LLVFGLTANS-------DTHLLQGQSLTLTLESPPGSSPSVQCR 131
Query: 580 HEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS-------------VMGFPEVGAEATVYL 626
K + L++ +G + C V+ F + +
Sbjct: 132 SPRG-KNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYK-K 189
Query: 627 KGRPTIISHRTQFGI--PGDTARVECSAFSIP-PPEKVTWSYRGEEIGVGSSDDYSVLED 683
+G S F + + + A +T+ + +E+ V L+
Sbjct: 190 EGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQM 249
Query: 684 PLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQK 727
K + TL ++ G ++ G E+ L +
Sbjct: 250 GKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMR 293
Score = 66.0 bits (160), Expect = 2e-11
Identities = 32/300 (10%), Positives = 81/300 (27%), Gaps = 67/300 (22%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGD 89
D + G +TL +Q G + +G
Sbjct: 103 NSDTHLLQGQSLTLTLES---PPGSSPSVQCRSPR------------------GKNIQGG 141
Query: 90 YSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIV---QGDTLYTT 146
+L + + L D + C V + + VL IV +G+ + +
Sbjct: 142 KTLSVSQLELQDSGTWTCTVLQN--QKKVEFK--IDIVVLAFQKASSIVYKKEGEQVEFS 197
Query: 147 EDREIELECISANGK----------PPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKS 196
+E ++ +G+ + IT+ V + G++ +
Sbjct: 198 FPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHL 257
Query: 197 TLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRL 256
TL + + T + + ++ L ++ L
Sbjct: 258 TLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMR----------------ATQLQKNL 301
Query: 257 YCKAEANPS-HMKYRWYINDQPVPAAASATELYLTN--------ITRHQHDSIVKCEVQV 307
C+ S + + ++ + +++ N + +++ ++V
Sbjct: 302 TCEVWGPTSPKLMLSLKLENKEAKVSKREKAVWVLNPEAGMWQCLLSDSGQVLLESNIKV 361
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 103 bits (258), Expect = 4e-24
Identities = 49/336 (14%), Positives = 92/336 (27%), Gaps = 61/336 (18%)
Query: 441 LLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFS 500
++ +++ ++ K + A+ + +L G+ +C
Sbjct: 1 MIDIENEI-TEFFNKMR----DTLPAKDSKWLNPSCMFGGTMNDMAALGEPFSAKCPPIE 55
Query: 501 IP--------PPEKVTWSYRGEEIG---------------VGSSDD---YS--VHNDVGK 532
V W G+ S+D Y V G
Sbjct: 56 DSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGD 115
Query: 533 SE-DSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDV-DGNPAPEITW------IHEDSD 584
+ P Y + G++L C + ITW + D
Sbjct: 116 CVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGT 175
Query: 585 KVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLK------------GRPTI 632
K + NL + + +GRY C + +V + + + R +
Sbjct: 176 KYSQSGQNLIIHNPELEDSGRYDCYVH---YDDVRIKNDIVVSRCKILTVIPSQDHRFKL 232
Query: 633 ISHRTQFGIPGDTARVECSAFSIPPPE---KVTWSYRGEEIGVGSSDDYSVLEDPLKEGI 689
I G+ A + C+A S + W I YS+L
Sbjct: 233 ILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGI-T 291
Query: 690 KSTLIIRESRHDHFG-VYNCSVSNPYGSDSVEIMLK 724
++TL ++ G Y C N Y ++ +
Sbjct: 292 EATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVV 327
Score = 87.6 bits (216), Expect = 1e-18
Identities = 37/268 (13%), Positives = 71/268 (26%), Gaps = 49/268 (18%)
Query: 33 EPQDQTAVVGSRVTLPCRVID----------KTGVLQWTKDDFALGPHRNLSGFDRYAMI 82
+ A +G + C I+ K V+ W K P
Sbjct: 35 GTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNR---------- 84
Query: 83 GSDEEGDYSLEIYPVMLDDD-ARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGD 141
+ L I +D RY C V+T + PP I +
Sbjct: 85 ---RVKNGDLWIANYTSNDSHRRYLCTVTTK---NGDCVQGIVRSHIRKPPS--CIPETY 136
Query: 142 TLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRRTTVKSTLVL 200
L T + I+L C K ITW + ++ + ++ L++
Sbjct: 137 ELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQS----------GQNLII 186
Query: 201 TPKKEHHNTTFTCQAQNTADRTYK------VARLKLLVKYAPKVQVSVIGSNRLVEGTDV 254
+ + + C R L ++ + ++ + + G
Sbjct: 187 HNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPA 246
Query: 255 RLYCKAEANP---SHMKYRWYINDQPVP 279
+ C A + + W +
Sbjct: 247 NITCTAVSTSLLVDDVLIDWENPSGWII 274
Score = 79.5 bits (195), Expect = 5e-16
Identities = 34/208 (16%), Positives = 65/208 (31%), Gaps = 23/208 (11%)
Query: 33 EPQDQTAVVGSRVTLPCRVI--DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDY 90
E + + L C ++ + W K++ L +
Sbjct: 134 ETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKY-----------SQSGQ 182
Query: 91 SLEIYPVMLDDDARYQCQVSTGILGEP--AIRSRFATLTVLVPPDPPRIV-QGDTLYTTE 147
+L I+ L+D RY C V + + SR LTV+ D + + T
Sbjct: 183 NLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTI 242
Query: 148 DREIELECISANGKP----PAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTP- 202
+ C +A I W + +G ++ + + ++TL
Sbjct: 243 GEPANITC-TAVSTSLLVDDVLIDWENPSGWIIGLDF-GVYSILTSSGGITEATLYFENV 300
Query: 203 KKEHHNTTFTCQAQNTADRTYKVARLKL 230
+E+ T+TC+ N + L
Sbjct: 301 TEEYIGNTYTCRGHNYYFDKTLTTTVVL 328
Score = 66.4 bits (161), Expect = 9e-12
Identities = 33/306 (10%), Positives = 67/306 (21%), Gaps = 55/306 (17%)
Query: 132 PDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRR 191
+C + D V + R
Sbjct: 28 NPSCMFGGTMNDMAALGEPFSAKC-PPIEDSLLSHRYNDKDNVVNW--EKIGKTRRPLNR 84
Query: 192 TTVKSTLVLTP-KKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVE 250
L + + + C + ++ ++ P +
Sbjct: 85 RVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGI-VRSHIRKPPSCIPE-TYELGTHD 142
Query: 251 GTDVRLYCKAEANPSHMKYRWYINDQPVPA-----AASATELYLTNITRH---------- 295
+ LYC + WY N+Q + + S L + N
Sbjct: 143 KYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVH 202
Query: 296 ------QHDSIVKCEVQVSVIG------------SNRLVEGTDVRLYCKAEANP---SHM 334
++D +V ++VI + G + C A + +
Sbjct: 203 YDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDV 262
Query: 335 KYRWYINDQPVP-------------AAASATELYLTNITRHQHDSIVKCEVHNDVGKSED 381
W + + LY N+T + C HN
Sbjct: 263 LIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTL 322
Query: 382 SETLDV 387
+ T+ +
Sbjct: 323 TTTVVL 328
Score = 62.5 bits (151), Expect = 2e-10
Identities = 35/294 (11%), Positives = 65/294 (22%), Gaps = 66/294 (22%)
Query: 229 KLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAE--------ANPSHMKYRWYINDQPVPA 280
K P ++ G C N W +
Sbjct: 22 KDSKWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRP 81
Query: 281 AASATE---LYLTNITRHQHDSIVKCEVQVSVIGSNR---------------------LV 316
+ L++ N T + C V +
Sbjct: 82 LNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTH 141
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVPA-----AASATELYLTNITRHQHDSIVKCE 371
+ + LYC + WY N+Q + + S L + N C
Sbjct: 142 DKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELE-DSGRYDCY 200
Query: 372 VHNDVGKSEDSETLDVT---------YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPE- 421
VH D + ++ + + V G N+ C
Sbjct: 201 VHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVD 260
Query: 422 ---ITWIHEDSDKVVGNSPNLTLL---------------MTSDDLAGRYYCKAS 457
I W + + + ++L +T + + Y C+
Sbjct: 261 DVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGH 314
Score = 42.5 bits (99), Expect = 5e-04
Identities = 11/108 (10%), Positives = 28/108 (25%), Gaps = 13/108 (12%)
Query: 27 EQKFAMEPQDQTAVVGSRVTLPCRVI-----DKTGVLQWTKDDFALGPHRNLSGFDRYAM 81
+ + +G + C + ++ W G L +
Sbjct: 228 HRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPS---GWIIGLDFGVYSIL 284
Query: 82 IGSDEEGDYSLEIYPVMLDDDAR-YQCQVSTGILGEPAIRSRFATLTV 128
S + +L V + Y C+ + ++ T+ +
Sbjct: 285 TSSGGITEATLYFENVTEEYIGNTYTCRGHN-YYFD---KTLTTTVVL 328
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 99.3 bits (247), Expect = 5e-24
Identities = 36/175 (20%), Positives = 61/175 (34%), Gaps = 10/175 (5%)
Query: 556 VDRGAGVNLLCDVDGNPAPEI--TWIHEDS--DKVVGNSPNLTLLMTSDDLAGRYYCKAS 611
D G+ + L C ++ + W+ + + SDD G Y C
Sbjct: 10 EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSDDQWGEYSCVFL 69
Query: 612 VMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEI 670
PE A + L G P + + ++ G+TA + C + S+PP W +
Sbjct: 70 ----PEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSE 125
Query: 671 GVGSSDDYSVLEDPLKEGIKSTLIIRE-SRHDHFGVYNCSVSNPYGSDSVEIMLK 724
+ +S L I + G Y C+ ++ GSD I L+
Sbjct: 126 DKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLR 180
Score = 74.7 bits (183), Expect = 2e-15
Identities = 28/143 (19%), Positives = 48/143 (33%), Gaps = 9/143 (6%)
Query: 402 VDRGAGVNLLCDVDGNPAPEI--TWIHEDS--DKVVGNSPNLTLLMTSDDLAGRYYCKAS 457
D G+ + L C ++ + W+ + + SDD G Y C
Sbjct: 10 EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSDDQWGEYSCVFL 69
Query: 458 VMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEI 516
PE A + L G P + + ++ G+TA + C + S+PP W +
Sbjct: 70 ----PEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSE 125
Query: 517 GVGSSDDYSVHNDVGKSEDSETL 539
+ V S+ L
Sbjct: 126 DKALMNGSESRFFVSSSQGRSEL 148
Score = 69.3 bits (169), Expect = 1e-13
Identities = 31/204 (15%), Positives = 58/204 (28%), Gaps = 34/204 (16%)
Query: 37 QTAVVGSRVTLPCRVIDK---TGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLE 93
+GS++ L C + D +W K ++ D E
Sbjct: 8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGG---------------VVLKEDALPGQKTE 52
Query: 94 IYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQG-DTLYTTEDREIE 152
D Y C +G A + + PP R+ + + E
Sbjct: 53 FKVDSDDQWGEYSCVFLPEPMGT-------ANIQLHGPP---RVKAVKSSEHINEGETAM 102
Query: 153 LECISANGKPPA-EITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTP-KKEHHNTT 210
L C + PP + W T + + E+ + +S L + E
Sbjct: 103 LVC-KSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQ 161
Query: 211 FTCQAQNTADRTYKVARLKLLVKY 234
+ C ++ + L+ V+
Sbjct: 162 YRCNGTSSKGSDQAIITLR--VRS 183
Score = 68.5 bits (167), Expect = 2e-13
Identities = 29/187 (15%), Positives = 56/187 (29%), Gaps = 36/187 (19%)
Query: 317 EGTDVRLYCKAEANPS-HMKYRWYINDQPVP-AAASATELYLTNITRHQHDSIVKCEVHN 374
G+ + L C + + +RW + A + + C
Sbjct: 12 LGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSD-DQWGEYSCVFLP 70
Query: 375 DVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNP-APEITWIHEDSDK-- 431
+ + + + PR +A S ++ G L+C + P + W +
Sbjct: 71 EPMGTA---NIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDK 127
Query: 432 ----------VVGNSPNLTLL------MTSDDLAGRYYCKASVMGFPEVG-AEATVYLKG 474
V +S + L M +D G+Y C + G +A + L
Sbjct: 128 ALMNGSESRFFVSSSQGRSELHIENLNMEAD--PGQYRCNGT----SSKGSDQAIITL-- 179
Query: 475 RPTIISH 481
+ SH
Sbjct: 180 --RVRSH 184
Score = 64.7 bits (157), Expect = 5e-12
Identities = 26/173 (15%), Positives = 49/173 (28%), Gaps = 34/173 (19%)
Query: 250 EGTDVRLYCKAEANPS-HMKYRWYINDQPVP-AAASATELYLTNITRHQHDSIVKCEVQV 307
G+ + L C + + +RW + A + + C
Sbjct: 12 LGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSD-DQWGEYSCVFLP 70
Query: 308 SVIGSNRL-----------------VEGTDVRLYCKAEANPSHMKYRWYINDQP------ 344
+G+ + EG L CK+E+ P + WY
Sbjct: 71 EPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALM 130
Query: 345 --------VPAAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTY 389
V ++ +EL++ N+ +C + G + TL V
Sbjct: 131 NGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRS 183
Score = 61.2 bits (148), Expect = 9e-11
Identities = 29/188 (15%), Positives = 50/188 (26%), Gaps = 45/188 (23%)
Query: 483 TQFGIPGDTARVECSAFSIPPPE-KVTWSYRGEEIGVGSSDDYSVHNDVGKSEDS----- 536
T G + CS W G + + V +
Sbjct: 7 TTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSDDQWGEYSC 66
Query: 537 ---------ETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNP-APEITWIHEDSDK- 585
+ + PR +A S ++ G L+C + P + W +
Sbjct: 67 VFLPEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSED 126
Query: 586 -----------VVGNSPNLTLL------MTSDDLAGRYYCKASVMGFPEVG-AEATVYLK 627
V +S + L M +D G+Y C + G +A + L
Sbjct: 127 KALMNGSESRFFVSSSQGRSELHIENLNMEAD--PGQYRCNGT----SSKGSDQAIITL- 179
Query: 628 GRPTIISH 635
+ SH
Sbjct: 180 ---RVRSH 184
Score = 47.3 bits (112), Expect = 4e-06
Identities = 18/111 (16%), Positives = 34/111 (30%), Gaps = 9/111 (8%)
Query: 21 SLAQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWT--KDDFALGPHRNLSGFDR 78
++ + + + G L C+ V W K + R
Sbjct: 77 NIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESR 136
Query: 79 YAMIGSDEEGDYSLEIYPVMLDDDA-RYQCQVSTGILGEPAIRSRFATLTV 128
+ + S G L I + ++ D +Y+C ++ G TL V
Sbjct: 137 FFVSSSQ--GRSELHIENLNMEADPGQYRCNGTSSK-GSD---QAIITLRV 181
Score = 41.2 bits (96), Expect = 5e-04
Identities = 13/92 (14%), Positives = 25/92 (27%), Gaps = 15/92 (16%)
Query: 637 TQFGIPGDTARVECSAFSIPPPE-KVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLII 695
T G + CS W G + +
Sbjct: 7 TTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG-------------QKTEF 53
Query: 696 RESRHDHFGVYNCSVSN-PYGSDSVEIMLKPQ 726
+ D +G Y+C P G+ ++++ P+
Sbjct: 54 KVDSDDQWGEYSCVFLPEPMGTANIQLHGPPR 85
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 103 bits (257), Expect = 7e-24
Identities = 57/365 (15%), Positives = 88/365 (24%), Gaps = 82/365 (22%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDV-DGNPAPEITWIH-----EDSDKVVGNSPNLTLLMT 444
+ + G V L C G P W+ S++V+ L +L
Sbjct: 9 GPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVLNA 68
Query: 445 SDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPP 504
S + +G Y C+ + V
Sbjct: 69 SHEDSGAYSCRQRLTQRVLCHFSVRV---------------------------------- 94
Query: 505 EKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRF----RARPYSVQVDRGA 560
+ S ++ G+ E +T T P + R + V
Sbjct: 95 ---------------TDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAAN 139
Query: 561 GVNLLCDVDGNPAPEITWIHEDSD----------KVVGNSPNLTLLMTSDDLAGRYYCKA 610
V C GNP P I+W+ + K+ +L + G Y C
Sbjct: 140 TVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVV 199
Query: 611 S-VMGFPEVGAEATVYLKGRPTIISHRTQFG----IPGDTARVECSAFSIPPPEKVTWSY 665
G V + I + G C +S P + W
Sbjct: 200 ENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPH-IQWLK 258
Query: 666 RGEEIGVGSSDDYSVLEDPLKEGIK-------STLIIRESRHDHFGVYNCSVSNPYGSDS 718
E G D + LK L + + G Y C N G
Sbjct: 259 HVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSH 318
Query: 719 VEIML 723
L
Sbjct: 319 HSAWL 323
Score = 90.1 bits (223), Expect = 2e-19
Identities = 43/304 (14%), Positives = 85/304 (27%), Gaps = 42/304 (13%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRVIDKTGV--LQWTKDDFALGPHRNLSGFDRYAMIGSDEE 87
+ + G V L C + W KD L +R +
Sbjct: 11 EPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDG------TGLVPSERVLV------ 58
Query: 88 GDYSLEIYPVMLDDDARYQC--------------QVSTGILGEPAIRSRFATLTVLVPPD 133
G L++ +D Y C +V+ V
Sbjct: 59 GPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTG 118
Query: 134 PPRIVQGD-----TLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVD 188
P + + L + C A G P I+W+ R+
Sbjct: 119 APYWTRPERMDKKLLAVPAANTVRFRC-PAAGNPTPSISWLKNGREFRGEHRIGGIKLRH 177
Query: 189 GRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVK--YAPKVQVSVIGSN 246
+ +LV+ +TC +N + L +L + + P +Q + +
Sbjct: 178 Q-----QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQ 232
Query: 247 RLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQ 306
V G+DV +CK ++ +W + + + + + + E++
Sbjct: 233 TAVLGSDVEFHCKVYSDA-QPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELE 291
Query: 307 VSVI 310
V +
Sbjct: 292 VLSL 295
Score = 88.1 bits (218), Expect = 7e-19
Identities = 45/232 (19%), Positives = 67/232 (28%), Gaps = 31/232 (13%)
Query: 23 AQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDR 78
A Y + M+ + + V C G + W K+ + G
Sbjct: 119 APYWTRPERMDKKLLAVPAANTVRFRCPA---AGNPTPSISWLKNGREFRGEHRIGGI-- 173
Query: 79 YAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIV 138
+SL + V+ D Y C V G IR TL VL I+
Sbjct: 174 -----KLRHQQWSLVMESVVPSDRGNYTCVVENK-FGS--IRQT-YTLDVLERSPHRPIL 224
Query: 139 QGDT---LYTTEDREIELECISANGKPPAEITW-----IDGTGTVMSNVRVTEEASVDGR 190
Q ++E C I W ++G+ G
Sbjct: 225 QAGLPANQTAVLGSDVEFHC-KVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGA 283
Query: 191 RTTVK--STLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQV 240
TT K L L +TC A N+ ++ A L+V A + V
Sbjct: 284 NTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAW--LVVLPAEEELV 333
Score = 78.9 bits (194), Expect = 9e-16
Identities = 47/335 (14%), Positives = 79/335 (23%), Gaps = 73/335 (21%)
Query: 234 YAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA----SATELYL 289
P + G V L C W + + + L +
Sbjct: 6 EVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQV 65
Query: 290 TNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLY-CKAEANPSHMKYRWYINDQPVPAA 348
N + D Y C+ + + + P++
Sbjct: 66 LNASH------------------------EDSGAYSCRQR-LTQRVLCHFSVRVTDAPSS 100
Query: 349 ASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRF----RARPYSVQVDR 404
++ G+ E +T T P + R + V
Sbjct: 101 GD-----------------------DEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPA 137
Query: 405 GAGVNLLCDVDGNPAPEITWIHEDSD----------KVVGNSPNLTLLMTSDDLAGRYYC 454
V C GNP P I+W+ + K+ +L + G Y C
Sbjct: 138 ANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTC 197
Query: 455 KAS-VMGFPEVGAEATVYLKGRPTIISHRTQFG----IPGDTARVECSAFSIPPPEKVTW 509
G V + I + G C +S P + W
Sbjct: 198 VVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPH-IQW 256
Query: 510 SYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYG 544
E G D + + V K+ + T D
Sbjct: 257 LKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELE 291
Score = 77.3 bits (190), Expect = 3e-15
Identities = 59/381 (15%), Positives = 92/381 (24%), Gaps = 100/381 (26%)
Query: 131 PPDPPRIVQG--DTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASV 187
+ P G + L +EL C G P W+ DG
Sbjct: 4 AAEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDG-----------TGLVP 52
Query: 188 DGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNR 247
R L + + ++C+ + T +
Sbjct: 53 SERVLVGPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFS--------------------- 91
Query: 248 LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQV 307
V TD E + P Y T R +
Sbjct: 92 -VRVTDAPSSGDDEDGEDEAEDTGVDTGAP----------YWTRPERMDKKLLA------ 134
Query: 308 SVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTN------ITR 361
+ VR C A NP+ W N + + L + +
Sbjct: 135 -------VPAANTVRFRCPAAGNPTP-SISWLKNGREFRGEHRIGGIKLRHQQWSLVMES 186
Query: 362 -HQHDS-IVKCEVHNDVGKSEDSETLDV-----TYGPRFRARPYSVQVDRGAGVNLLCDV 414
D C V N G + TLDV P + G+ V C V
Sbjct: 187 VVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKV 246
Query: 415 DGNPAPEITWIHE----------------------DSDKVVGNSPNLTLLMTSDDLAGRY 452
+ P I W+ ++ L+L + + AG Y
Sbjct: 247 YSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEY 306
Query: 453 YCKAS-VMGFPEVGAEATVYL 472
C A +GF + + +L
Sbjct: 307 TCLAGNSIGF----SHHSAWL 323
Score = 77.0 bits (189), Expect = 4e-15
Identities = 46/252 (18%), Positives = 70/252 (27%), Gaps = 40/252 (15%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDV-DGNPAPEITWIH-----EDSDKVVGNSPNLTLLMT 598
+ + G V L C G P W+ S++V+ L +L
Sbjct: 9 GPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVLNA 68
Query: 599 SDDLAGRYYCKASVMGFPEVGAEATVYLKG-------------------------RPTII 633
S + +G Y C+ + V RP +
Sbjct: 69 SHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERM 128
Query: 634 SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTL 693
+ +T R C A P P ++W G E L + +L
Sbjct: 129 DKKLLAVPAANTVRFRCPAAGNPTPS-ISWLKNGREFRGEHRIGGIKLRHQ-----QWSL 182
Query: 694 IIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFPLLLILTGVIGCVVILVALTMVVI 753
++ G Y C V N +GS L + P IL + V + V
Sbjct: 183 VMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEF 242
Query: 754 LCQRKVK-KPPP 764
C KV P
Sbjct: 243 HC--KVYSDAQP 252
Score = 63.1 bits (153), Expect = 1e-10
Identities = 29/126 (23%), Positives = 45/126 (35%), Gaps = 18/126 (14%)
Query: 23 AQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDR 78
+ +R A P +QTAV+GS V C+V +QW K G G
Sbjct: 218 SPHRPILQAGLPANQTAVLGSDVEFHCKV---YSDAQPHIQWLKHVEVNGSKVGPDGTPY 274
Query: 79 YAMIGSD-----EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD 133
++ + ++ L ++ V +D Y C I G A L VL
Sbjct: 275 VTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSI-GF---SHHSAWLVVLPA-- 328
Query: 134 PPRIVQ 139
+V+
Sbjct: 329 EEELVE 334
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 99.4 bits (248), Expect = 7e-24
Identities = 37/194 (19%), Positives = 71/194 (36%), Gaps = 22/194 (11%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVVGNSPNLTLLM- 597
P R V G L C + G P P+I W + + + + L
Sbjct: 8 PGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTV 67
Query: 598 ---TSDDLAGRYYCKAS-VMGFPEVGAEATVYL--KGRPTIISHRTQFGIPGDTARVECS 651
+D G Y C A+ +G E ++ + + P +G G T R+
Sbjct: 68 MTEEQED-EGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVM 126
Query: 652 AFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRE-SRHDHFGVYNCSV 710
P P +TW + + + +S++ ++ + L+++ R H G Y +
Sbjct: 127 YIGRPVPA-MTWFHGQKLL--QNSENITIENT----EHYTHLVMKNVQRKTHAGKYKVQL 179
Query: 711 SNPYGSDSVEIMLK 724
SN +G+ + ++
Sbjct: 180 SNVFGTVDAILDVE 193
Score = 98.6 bits (246), Expect = 1e-23
Identities = 36/210 (17%), Positives = 76/210 (36%), Gaps = 26/210 (12%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
E +D T +G L C++ G ++W + L R +Y M
Sbjct: 9 GIRKEMKDVTTKLGEAAQLSCQI---VGRPLPDIKWYRFGKELIQSR------KYKMS-- 57
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD-PPRIVQGDTL 143
+ ++L + +D+ Y C ++T +GE + + + L + P P +
Sbjct: 58 SDGRTHTLTVMTEEQEDEGVYTC-IATNEVGE--VETS-SKLLLQATPQFHPGYPLKEKY 113
Query: 144 YTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPK 203
Y + L G+P +TW G + ++ +T E + +K+ +
Sbjct: 114 YGAVGSTLRLHV-MYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKN-----VQ 167
Query: 204 KEHHNTTFTCQAQNTADRTYKVARLKLLVK 233
++ H + Q N + +++ K
Sbjct: 168 RKTHAGKYKVQLSNVFGTVDAILDVEIQDK 197
Score = 79.0 bits (195), Expect = 7e-17
Identities = 41/185 (22%), Positives = 65/185 (35%), Gaps = 32/185 (17%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA--------SATELYLTNITRHQHDS- 366
G +L C+ P +WY + + + L + Q D
Sbjct: 20 KLGEAAQLSCQIVGRPL-PDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEE--QEDEG 76
Query: 367 IVKCEVHNDVGKSEDSETLDVTYGPRFRARPY---SVQVDRGAGVNLLCDVDGNPAPEIT 423
+ C N+VG+ E S L + P+F G+ + L G P P +T
Sbjct: 77 VYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMT 136
Query: 424 WIHEDSDKVVGNSPNLTLLMTSDDL------------AGRYYCKAS-VMGFPEVGAEATV 470
W H K++ NS N+T+ T AG+Y + S V G V A V
Sbjct: 137 WFHG--QKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFG--TVDAILDV 192
Query: 471 YLKGR 475
++ +
Sbjct: 193 EIQDK 197
Score = 77.0 bits (190), Expect = 4e-16
Identities = 30/152 (19%), Positives = 54/152 (35%), Gaps = 17/152 (11%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVVGNSPNLTLLM- 443
P R V G L C + G P P+I W + + + + L
Sbjct: 8 PGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTV 67
Query: 444 ---TSDDLAGRYYCKAS-VMGFPEVGAEATVYL--KGRPTIISHRTQFGIPGDTARVECS 497
+D G Y C A+ +G E ++ + + P +G G T R+
Sbjct: 68 MTEEQED-EGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVM 126
Query: 498 AFSIPPPEKVTWSYRGEEIGVGSSDDYSVHND 529
P P +TW + + + +S++ ++ N
Sbjct: 127 YIGRPVPA-MTWFHGQKLL--QNSENITIENT 155
Score = 72.0 bits (177), Expect = 2e-14
Identities = 43/195 (22%), Positives = 68/195 (34%), Gaps = 46/195 (23%)
Query: 476 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEI------------------ 516
P I + G+ A++ C P P+ + W G+E+
Sbjct: 8 PGIRKEMKDVTTKLGEAAQLSCQIVGRPLPD-IKWYRFGKELIQSRKYKMSSDGRTHTLT 66
Query: 517 --GVGSSD--DYSV--HNDVGKSEDSETLDVTYGPRFRARPY---SVQVDRGAGVNLLCD 567
D Y+ N+VG+ E S L + P+F G+ + L
Sbjct: 67 VMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVM 126
Query: 568 VDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDL------------AGRYYCKAS-VMG 614
G P P +TW H K++ NS N+T+ T AG+Y + S V G
Sbjct: 127 YIGRPVPAMTWFHG--QKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFG 184
Query: 615 FPEVGAEATVYLKGR 629
V A V ++ +
Sbjct: 185 --TVDAILDVEIQDK 197
Score = 63.2 bits (154), Expect = 2e-11
Identities = 32/176 (18%), Positives = 61/176 (34%), Gaps = 23/176 (13%)
Query: 134 PPRIVQG-DTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRR 191
P I + + T +L C G+P +I W G ++ + + + S DGR
Sbjct: 7 APGIRKEMKDVTTKLGEAAQLSC-QIVGRPLPDIKWYRFGK-ELIQSRKY--KMSSDGR- 61
Query: 192 TTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRL--V 249
TL + +++ +TC A N ++L ++ P+ +
Sbjct: 62 ---THTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLL--LQATPQFHPGYPLKEKYYGA 116
Query: 250 EGTDVRLYCKAEANPSHMKYRWYINDQPVP--------AAASATELYLTNITRHQH 297
G+ +RL+ P W+ + + T L + N+ R H
Sbjct: 117 VGSTLRLHVMYIGRPVP-AMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTH 171
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 102 bits (254), Expect = 8e-24
Identities = 37/269 (13%), Positives = 67/269 (24%), Gaps = 41/269 (15%)
Query: 488 PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYS---------------------- 525
T + CS V W +E +
Sbjct: 14 VSSTFVLTCSG-----SAPVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFC 68
Query: 526 -VHNDVGKSEDSE-TLDVTYGPRFRA------RPYSVQVDRGAGVNLLCDVDGNPAPEIT 577
++ G D L + + + + + C V P +T
Sbjct: 69 THNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTD-PQLVVT 127
Query: 578 WIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTI---IS 634
+ D + + + Y CK ++ VY +I ++
Sbjct: 128 LHEKKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVN 187
Query: 635 HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLI 694
G+ + C W+Y +E G L D I+S L
Sbjct: 188 AVQTVVRQGENITLMCIVIGNEVVN-FEWTYPRKESGRLVEPVTDFLLDMPYH-IRSILH 245
Query: 695 IRESRHDHFGVYNCSVSNPYGSDSVEIML 723
I + + G Y C+V+ E +
Sbjct: 246 IPSAELEDSGTYTCNVTESVNDHQDEKAI 274
Score = 85.5 bits (211), Expect = 3e-18
Identities = 35/239 (14%), Positives = 61/239 (25%), Gaps = 25/239 (10%)
Query: 315 LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATE-------LYLTNITRHQHDSI 367
L + L C A W Q P + + L LTN+T
Sbjct: 12 LNVSSTFVLTCSGSA-----PVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTG-LDTGE 65
Query: 368 VKCEVHNDVGKSEDSE-TLDVTYGPRFRA------RPYSVQVDRGAGVNLLCDVDGNPAP 420
C ++ G D L + + + + + C V P
Sbjct: 66 YFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTD-PQL 124
Query: 421 EITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTI-- 478
+T + D + + + Y CK ++ VY +I
Sbjct: 125 VVTLHEKKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINV 184
Query: 479 -ISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDS 536
++ G+ + C W+Y +E G D+ S
Sbjct: 185 SVNAVQTVVRQGENITLMCIVIGNEVVN-FEWTYPRKESGRLVEPVTDFLLDMPYHIRS 242
Score = 82.1 bits (202), Expect = 4e-17
Identities = 41/282 (14%), Positives = 79/282 (28%), Gaps = 37/282 (13%)
Query: 32 MEPQDQTAVV--GSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGD 89
+ P V+ S L C + + W + + D
Sbjct: 3 VTPPGPELVLNVSSTFVLTCSG---SAPVVWERMSQEP---------PQEMAKAQDGTFS 50
Query: 90 YSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDP--PRIVQGDTLYTTE 147
L + + D Y C + G + + V P P + ++ TE
Sbjct: 51 SVLTLTNLTGLDTGEYFCTHNDS-RGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTE 109
Query: 148 DREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHH 207
EI + C + P +T + G V V D +R
Sbjct: 110 ITEITIPCRVTD--PQLVVTLHEKKGDVALPV------PYDHQRGFSGI---------FE 152
Query: 208 NTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLV-EGTDVRLYCKAEANPSH 266
+ ++ C+ DR + + VSV +V +G ++ L C N
Sbjct: 153 DRSYICKTTI-GDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEV- 210
Query: 267 MKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVS 308
+ + W + +L ++ H + ++
Sbjct: 211 VNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELE 252
Score = 74.4 bits (182), Expect = 2e-14
Identities = 29/201 (14%), Positives = 55/201 (27%), Gaps = 22/201 (10%)
Query: 32 MEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYS 91
E + +T+PCRV D V+ + + Y
Sbjct: 100 AEELFIFLTEITEITIPCRVTDPQLVVTLHEKKGDVAL-----------------PVPYD 142
Query: 92 LEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREI 151
+ + +D Y C+ + G + S + L V + I
Sbjct: 143 HQRGFSGIFEDRSYICKTTIGDR---EVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENI 199
Query: 152 ELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTF 211
L C G W V + +D ++S L + + + T+
Sbjct: 200 TLMC-IVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMP-YHIRSILHIPSAELEDSGTY 257
Query: 212 TCQAQNTADRTYKVARLKLLV 232
TC + + + + V
Sbjct: 258 TCNVTESVNDHQDEKAINITV 278
Score = 67.8 bits (165), Expect = 2e-12
Identities = 42/301 (13%), Positives = 84/301 (27%), Gaps = 65/301 (21%)
Query: 128 VLVPPDPPRIVQ-GDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEAS 186
V+ PP P ++ T L C A + W + + ++
Sbjct: 2 VVTPPGPELVLNVSSTF--------VLTC-----SGSAPVVWERMSQEPPQEMAKAQD-- 46
Query: 187 VDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTA-DRTYKVARLKLLVKYAPKVQVSVIGS 245
T S L LT + C ++ T + RL + V +
Sbjct: 47 -----GTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAE 101
Query: 246 NRLV---EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVK 302
+ E T++ + C+ +P + + V + + D
Sbjct: 102 ELFIFLTEITEITIPCRVT-DP-QLVVTLHEKKGDVAL--PVPYDHQRGFSGIFEDRSYI 157
Query: 303 CE----------------------VQVSVIGSNRLV-EGTDVRLYCKAEANPSHMKYRWY 339
C+ + VSV +V +G ++ L C N + + W
Sbjct: 158 CKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEV-VNFEWT 216
Query: 340 INDQPVPAAASATELYLTNITRHQHDSIV------------KCEVHNDVGKSEDSETLDV 387
+ +L ++ H + C V V +D + +++
Sbjct: 217 YPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINI 276
Query: 388 T 388
T
Sbjct: 277 T 277
Score = 62.4 bits (151), Expect = 1e-10
Identities = 36/285 (12%), Positives = 68/285 (23%), Gaps = 60/285 (21%)
Query: 248 LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATE-------LYLTNITRH----- 295
L + L C A W Q P + + L LTN+T
Sbjct: 12 LNVSSTFVLTCSGSA-----PVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEY 66
Query: 296 ----------QHDSIVKCEVQVSVIGSNRLV-----------EGTDVRLYCKAEANPSHM 334
+ D + + V L E T++ + C+ +P +
Sbjct: 67 FCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DP-QL 124
Query: 335 KYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYG---P 391
+ V + + D C+ + +
Sbjct: 125 VVTLHEKKGDVAL--PVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSI 182
Query: 392 RFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPN------------- 438
V +G + L+C V GN W + + P
Sbjct: 183 NVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRS 242
Query: 439 -LTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISH 481
L + + +G Y C + + + + + H
Sbjct: 243 ILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVESGHHHHH 287
Score = 42.4 bits (99), Expect = 4e-04
Identities = 19/102 (18%), Positives = 32/102 (31%), Gaps = 8/102 (7%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRVIDKTGV-LQWTKDDFALGPHRNLSGFDRYAMIGSDEEG 88
++ G +TL C VI V +WT G R + + +
Sbjct: 184 VSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESG--RLVEPVTDFLLDMPYHIR 241
Query: 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLV 130
L I L+D Y C V+ + + + + V
Sbjct: 242 -SILHIPSAELEDSGTYTCNVTESV-ND---HQDEKAINITV 278
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 101 bits (252), Expect = 8e-24
Identities = 35/247 (14%), Positives = 73/247 (29%), Gaps = 31/247 (12%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAG 450
+P V V + V L C+V P T + ++P+ + S + +G
Sbjct: 2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPSYRITSASVNDSG 61
Query: 451 RYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWS 510
Y C+ + G + + ++ ++ G+ + C A+ V +
Sbjct: 62 EYRCQRGLSGR---SDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYY 118
Query: 511 YRGEEIGVGSSD--------------DY--SVHNDVGKSEDSETLDVTYGPR---FRARP 551
G+ + Y S + ++ V A
Sbjct: 119 RNGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASV 178
Query: 552 YSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDK------VVGNSPNLTLL-MTSDDLAG 604
+ + G V L C+ ++ S +L +D +G
Sbjct: 179 -TSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQILTARRED-SG 236
Query: 605 RYYCKAS 611
Y+C+A+
Sbjct: 237 LYWCEAA 243
Score = 99 bits (249), Expect = 2e-23
Identities = 43/272 (15%), Positives = 77/272 (28%), Gaps = 37/272 (13%)
Query: 475 RPTIISH--RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHN---- 528
+ I +T + C +P W G S+ Y + +
Sbjct: 1 KAVITLQPPWVSV-FQEETVTLHCEVLHLPGSSSTQWFLNGTATQT-STPSYRITSASVN 58
Query: 529 DVGK---------SEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGN-PAPEITW 578
D G+ D L++ G V G + L C + + +
Sbjct: 59 DSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRV-FTEGEPLALRCHAWKDKLVYNVLY 117
Query: 579 IHEDSD-KVVGNSPNLTLLMTSDDLAGRYYCKASVM-GFPEVGAEATV-YLKGRPTIISH 635
K + NLT+L T+ G Y+C + G TV L P + +
Sbjct: 118 YRNGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNAS 177
Query: 636 RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLII 695
T + G+ + C + + + + S I
Sbjct: 178 VTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTS----------SEYQI 227
Query: 696 RESRHDHFGVYNCSVSNPYG-----SDSVEIM 722
+R + G+Y C + G S +E+
Sbjct: 228 LTARREDSGLYWCEAATEDGNVLKRSPELELQ 259
Score = 92.7 bits (230), Expect = 7e-21
Identities = 42/270 (15%), Positives = 83/270 (30%), Gaps = 50/270 (18%)
Query: 32 MEPQDQTAVVGSRVTLPCRVIDKTGVL--QWTKDDFALGPHRNLSGFDRYAMIGSDEEGD 89
++P + VTL C V+ G QW + A
Sbjct: 6 LQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTP----------------- 48
Query: 90 YSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDR 149
S I ++D Y+CQ +P I+ +L+ +G+ L
Sbjct: 49 -SYRITSASVNDSGEYRCQRGLSGRSDP-IQLEIHRGWLLLQVSSRVFTEGEPL------ 100
Query: 150 EIELECISANGKPPAEITW-IDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHN 208
L C + K + + +G + S L + HN
Sbjct: 101 --ALRCHAWKDKLVYNVLYYRNGK-------------AFKFFHWN--SNLTILKTNISHN 143
Query: 209 TTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSH-- 266
T+ C T + + + P ++ ++ L+EG V L C+ +
Sbjct: 144 GTYHCSGMGKHRYTSAGISVTVKELF-PAPVLNASVTSPLLEGNLVTLSCETKLLLQRPG 202
Query: 267 --MKYRWYINDQPVPAAASATELYLTNITR 294
+ + +Y+ + + +++E + R
Sbjct: 203 LQLYFSFYMGSKTLRGRNTSSEYQILTARR 232
Score = 91.9 bits (228), Expect = 1e-20
Identities = 35/206 (16%), Positives = 67/206 (32%), Gaps = 12/206 (5%)
Query: 312 SNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIV-KC 370
+ + V L+C+ P +W++N S +T+ + + DS +C
Sbjct: 10 WVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQT--STPSYRITSASVN--DSGEYRC 65
Query: 371 EVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGN-PAPEITWIHEDS 429
+ D L++ G V G + L C + + +
Sbjct: 66 QRGL--SGRSDPIQLEIHRGWLLLQVSSRV-FTEGEPLALRCHAWKDKLVYNVLYYRNGK 122
Query: 430 D-KVVGNSPNLTLLMTSDDLAGRYYCKASVM-GFPEVGAEATV-YLKGRPTIISHRTQFG 486
K + NLT+L T+ G Y+C + G TV L P + + T
Sbjct: 123 AFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPL 182
Query: 487 IPGDTARVECSAFSIPPPEKVTWSYR 512
+ G+ + C + + +
Sbjct: 183 LEGNLVTLSCETKLLLQRPGLQLYFS 208
Score = 88.0 bits (218), Expect = 3e-19
Identities = 41/252 (16%), Positives = 86/252 (34%), Gaps = 20/252 (7%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAG 604
+P V V + V L C+V P T + ++P+ + S + +G
Sbjct: 2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPSYRITSASVNDSG 61
Query: 605 RYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWS 664
Y C+ + G + + ++ ++ G+ + C A+ V +
Sbjct: 62 EYRCQRGLSGR---SDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYY 118
Query: 665 YRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
G+ + S L I ++ H G Y+CS + S I +
Sbjct: 119 RNGKAFKFFHWN--------------SNLTILKTNISHNGTYHCSGMGKHRYTSAGISVT 164
Query: 725 PQKSFPLLLILTGVIGCVVILVALTMVVILCQRKVKKPPPGNGIEHHVTADGEKNQCKES 784
++ FP ++ V L+ +V + C+ K+ PG + + + + +
Sbjct: 165 VKELFPAPVLNASV---TSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNT 221
Query: 785 DNSSNISDIKLE 796
+ I + E
Sbjct: 222 SSEYQILTARRE 233
Score = 83.4 bits (206), Expect = 9e-18
Identities = 42/292 (14%), Positives = 91/292 (31%), Gaps = 65/292 (22%)
Query: 127 TVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEAS 186
+ + P + Q +T+ L C + + W
Sbjct: 3 VITLQPPWVSVFQEETV--------TLHCEVLHLPGSSSTQW-----------------F 37
Query: 187 VDGRRTTVKS-TLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPK-VQVSVIG 244
++G T + + +T + + + CQ + + ++L + +QVS
Sbjct: 38 LNGTATQTSTPSYRITSASVNDSGEYRCQRGLSG----RSDPIQLEIHRGWLLLQVS--- 90
Query: 245 SNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCE 304
S EG + L C A + +Y N + + L + H+ C
Sbjct: 91 SRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNIS-HNGTYHCS 149
Query: 305 V----------------------QVSVIGSNRLVEGTDVRLYCKAEANPSH----MKYRW 338
++ ++ L+EG V L C+ + + + +
Sbjct: 150 GMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSF 209
Query: 339 YINDQPVPAAASATELYLTNITRHQHDS-IVKCEVHNDVGKSE-DSETLDVT 388
Y+ + + +++E + R DS + CE + G S L++
Sbjct: 210 YMGSKTLRGRNTSSEYQILTARR--EDSGLYWCEAATEDGNVLKRSPELELQ 259
Score = 66.1 bits (161), Expect = 6e-12
Identities = 26/217 (11%), Positives = 56/217 (25%), Gaps = 41/217 (18%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRVIDKTGVLQ--WTKDDFALGPHRNLSGFDRYAMIGSDEE 87
++ + G + L C V + ++ A S
Sbjct: 85 LLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNS------------- 131
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTE 147
+L I + + Y C G S ++TV P + T E
Sbjct: 132 ---NLTILKTNISHNGTYHCSG-MGKHRY---TSAGISVTVKELFPAPVLNASVTSPLLE 184
Query: 148 DREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHH 207
+ L C + + + + S + +
Sbjct: 185 GNLVTLSC-ETKLLLQRPGLQL--YFSFYMGSKTLRGRNTS-------SEYQILTARRED 234
Query: 208 NTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIG 244
+ + C+A +K +P++++ V+G
Sbjct: 235 SGLYWCEAATEDGNV---------LKRSPELELQVLG 262
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 99.0 bits (247), Expect = 9e-24
Identities = 42/207 (20%), Positives = 69/207 (33%), Gaps = 26/207 (12%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
F E ++ S TL C+V TG ++W + + I
Sbjct: 6 HFKEELRNLNVRYQSNATLVCKV---TGHPKPIVKWYRQGKEIIAD------GLKYRIQE 56
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD--PPRIVQG-D 141
+ G + L I V DD YQ +T G S A+L V VP P+ ++G
Sbjct: 57 FKGGYHQLIIASVTDDDATVYQV-RATNQGGS---VSGTASLEVEVPAKIHLPKTLEGMG 112
Query: 142 TLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLT 201
++ + ++ +GKP ITW G + +N + S +
Sbjct: 113 AVHALRGEVVSIKI-PFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFT-----SLVFPN 166
Query: 202 PKKEHHNTTFTCQAQNTADRTYKVARL 228
+ + A+N K L
Sbjct: 167 GVERKDAGFYVVCAKNRFGIDQKTVEL 193
Score = 96.7 bits (241), Expect = 5e-23
Identities = 39/195 (20%), Positives = 65/195 (33%), Gaps = 22/195 (11%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVV-----GNSPNL 593
P F+ ++ V + L+C V G+P P + W I D K G L
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 594 TLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGR---PTIISH-RTQFGIPGDTARV 648
+ +DD A Y +A+ G A V + + P + + G+ +
Sbjct: 65 IIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSI 124
Query: 649 ECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC 708
+ P P +TW + I ++ Y V+ S + G Y
Sbjct: 125 KIPFSGKPDPV-ITWQKGQDLID--NNGHYQVIVT---RSFTSLVFPNGVERKDAGFYVV 178
Query: 709 SVSNPYGSDSVEIML 723
N +G D + L
Sbjct: 179 CAKNRFGIDQKTVEL 193
Score = 81.7 bits (202), Expect = 8e-18
Identities = 33/168 (19%), Positives = 58/168 (34%), Gaps = 25/168 (14%)
Query: 314 RLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQ--------HD 365
+ ++ L CK +P +WY + + A + HQ D
Sbjct: 15 NVRYQSNATLVCKVTGHPKP-IVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDD 73
Query: 366 S-IVKCEVHNDVGKSEDSETLDV-----TYGPRFRARPYSVQVDRGAGVNLLCDVDGNPA 419
+ + + N G + +L+V + P+ +V RG V++ G P
Sbjct: 74 ATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPD 133
Query: 420 PEITW------IHEDSDKVVGNSPNLTLLMTSDDL----AGRYYCKAS 457
P ITW I + V + + T L+ + + AG Y A
Sbjct: 134 PVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAK 181
Score = 77.1 bits (190), Expect = 3e-16
Identities = 39/236 (16%), Positives = 67/236 (28%), Gaps = 74/236 (31%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAG 450
P F+ ++ V + L+C V G+P P + W +++ + +
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYR-QGKEIIADGLKYRIQEFKGGYH- 62
Query: 451 RYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWS 510
L II+ T D + A
Sbjct: 63 --------------------QL-----IIASVT----DDDATVYQVRA------------ 81
Query: 511 YRGEEIGVGSSDDYSVHNDVGKSEDSETLDV-----TYGPRFRARPYSVQVDRGAGVNLL 565
N G + +L+V + P+ +V RG V++
Sbjct: 82 ----------------TNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIK 125
Query: 566 CDVDGNPAPEITW------IHEDSDKVVGNSPNLTLLMTSDDL----AGRYYCKAS 611
G P P ITW I + V + + T L+ + + AG Y A
Sbjct: 126 IPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAK 181
Score = 64.7 bits (158), Expect = 6e-12
Identities = 22/150 (14%), Positives = 41/150 (27%), Gaps = 11/150 (7%)
Query: 134 PPRIVQG-DTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRR 191
P + L L C G P + W G + ++ + G
Sbjct: 4 APHFKEELRNLNVRYQSNATLVC-KVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY- 61
Query: 192 TTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLV--KYAPKVQVSVIGSNRLV 249
L++ + T + +A N A L++ V K + +G+ +
Sbjct: 62 ----HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHAL 117
Query: 250 EGTDVRLYCKAEANPSHMKYRWYINDQPVP 279
G V + P W +
Sbjct: 118 RGEVVSIKIPFSGKPDP-VITWQKGQDLID 146
Score = 56.7 bits (137), Expect = 4e-09
Identities = 26/106 (24%), Positives = 36/106 (33%), Gaps = 10/106 (9%)
Query: 630 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688
P R A + C P P V W +G+EI + Y + E G
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPI-VKWYRQGKEI-IADGLKYRIQEFK---G 59
Query: 689 IKSTLIIRESRHDHFGVYNCSVSNPYGSDS----VEIMLKPQKSFP 730
LII D VY +N GS S +E+ + + P
Sbjct: 60 GYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLP 105
Score = 46.3 bits (110), Expect = 1e-05
Identities = 25/197 (12%), Positives = 48/197 (24%), Gaps = 45/197 (22%)
Query: 234 YAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNIT 293
AP + + + ++ L CK +P +WY + + A +
Sbjct: 3 MAPHF-KEELRNLNVRYQSNATLVCKVTGHPKP-IVKWYRQGKEIIADGLKYRIQEFKGG 60
Query: 294 RHQ--------HDS------------IVKCEVQVSVIGSNRL--------------VEGT 319
HQ D+ V + V ++ + G
Sbjct: 61 YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGE 120
Query: 320 DVRLYCKAEANPSHMKYRWYINDQPVPA------AASATELYLTNITR-HQHDS-IVKCE 371
V + P W + + + L + D+
Sbjct: 121 VVSIKIPFSGKPDP-VITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVC 179
Query: 372 VHNDVGKSEDSETLDVT 388
N G + + LDV
Sbjct: 180 AKNRFGIDQKTVELDVA 196
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 98.9 bits (246), Expect = 2e-23
Identities = 45/215 (20%), Positives = 74/215 (34%), Gaps = 31/215 (14%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTG------VLQWTKDDFALGPHRNLSGFDRYAMIGSD-- 85
GS +T+ C+ + ++ W +D + + G + + S
Sbjct: 8 KDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVH--GEEDLKVQHSSYR 65
Query: 86 ----------EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPP 135
G+ +L+I V L D Y+C +S G + + +TV V
Sbjct: 66 QRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYG-------GADYKRITVKVNAPYN 118
Query: 136 RIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVK 195
+I Q + E EL C A G P AE+ W V+S T + + + V
Sbjct: 119 KINQRILVVDPVTSEHELTC-QAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVT 177
Query: 196 STLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKL 230
STL + N F C + A L +
Sbjct: 178 STLRINT---TTNEIFYCTFRRLDPEENHTAELVI 209
Score = 58.5 bits (141), Expect = 1e-09
Identities = 36/209 (17%), Positives = 63/209 (30%), Gaps = 45/209 (21%)
Query: 551 PYSVQVDRGAGVNLLCDVDGNPAPE-----ITWIHED----------------------- 582
V+ G+ + + C + + W ED
Sbjct: 8 KDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQR 67
Query: 583 ----SDKVVGNSPNLTL--LMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHR 636
D++ + L + + D AG Y C S G TV + I+ R
Sbjct: 68 ARLLKDQLSLGNAALQITDVKLQD--AGVYRCMISYGGADY--KRITVKVNAPYNKINQR 123
Query: 637 TQFGIP-GDTARVECSAFSIPPPEKVTW-SYRGEEIGVGSSDDYSVLEDPLKEGIKSTLI 694
P + C A P E V W S + + ++ S E+ L + STL
Sbjct: 124 ILVVDPVTSEHELTCQAEGYPKAE-VIWTSSDHQVLSGKTTTTNSKREEKLF-NVTSTLR 181
Query: 695 IRESRHDHFGVYNCSVSNPYGSDSVEIML 723
I + + ++ C+ ++ L
Sbjct: 182 INTTTN---EIFYCTFRRLDPEENHTAEL 207
Score = 53.1 bits (127), Expect = 9e-08
Identities = 33/217 (15%), Positives = 58/217 (26%), Gaps = 50/217 (23%)
Query: 308 SVIGSNRLVE---GTDVRLYCKA--EANPSHMKYRWY--INDQPVPAAASATE------- 353
+V L G+++ + CK E Y + D+ + E
Sbjct: 3 TVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHS 62
Query: 354 -------------------LYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFR 394
L +T++ Q + +C + G T+ V
Sbjct: 63 SYRQRARLLKDQLSLGNAALQITDVK-LQDAGVYRCMISYG-GADYKRITVKVNAPYNKI 120
Query: 395 ARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDL------ 448
+ V + L C +G P E+ W D + G + T + L
Sbjct: 121 NQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKT-TTTNSKREEKLFNVTST 179
Query: 449 -------AGRYYCKASVMGFPEVGAEATVYLKGRPTI 478
+YC PE A + + P
Sbjct: 180 LRINTTTNEIFYCTFR-RLDPEENHTAELVIPELPLA 215
Score = 46.1 bits (109), Expect = 2e-05
Identities = 20/118 (16%), Positives = 32/118 (27%), Gaps = 15/118 (12%)
Query: 528 NDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV 587
+ G T+ V + V + L C +G P E+ W D +
Sbjct: 100 SYGGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLS 159
Query: 588 GNSPNLTLLMTSDDL-------------AGRYYCKASVMGFPEVGAEATVYLKGRPTI 632
G + T + L +YC PE A + + P
Sbjct: 160 GKT-TTTNSKREEKLFNVTSTLRINTTTNEIFYCTFR-RLDPEENHTAELVIPELPLA 215
Score = 41.5 bits (97), Expect = 6e-04
Identities = 32/207 (15%), Positives = 62/207 (29%), Gaps = 41/207 (19%)
Query: 127 TVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAE-----ITWIDGTGTVMS---- 177
TV VP D + G + +EC + + + W ++
Sbjct: 3 TVTVPKDLYVVEYGSN--------MTIEC-KFPVEKQLDLAALIVYWEMEDKNIIQFVHG 53
Query: 178 NVRVTEEASVDGRRTTV--------KSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLK 229
+ + S +R + + L +T K + C YK +K
Sbjct: 54 EEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISY-GGADYKRITVK 112
Query: 230 LLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAAS------ 283
+ Y Q ++ ++ L C+AE P + W +D V + +
Sbjct: 113 VNAPYNKINQRILVVDP---VTSEHELTCQAEGYPKA-EVIWTSSDHQVLSGKTTTTNSK 168
Query: 284 -ATELYLTNIT---RHQHDSIVKCEVQ 306
+L+ T + I C +
Sbjct: 169 REEKLFNVTSTLRINTTTNEIFYCTFR 195
Score = 40.0 bits (93), Expect = 0.002
Identities = 29/181 (16%), Positives = 51/181 (28%), Gaps = 40/181 (22%)
Query: 397 PYSVQVDRGAGVNLLCDVDGNPAPE-----ITWIHED----------------------- 428
V+ G+ + + C + + W ED
Sbjct: 8 KDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQR 67
Query: 429 ----SDKVVGNSPNLTL--LMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHR 482
D++ + L + + D AG Y C S G TV + I+ R
Sbjct: 68 ARLLKDQLSLGNAALQITDVKLQD--AGVYRCMISYGGADY--KRITVKVNAPYNKINQR 123
Query: 483 TQFGIP-GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDV 541
P + C A P E V W+ ++ G + + + + TL +
Sbjct: 124 ILVVDPVTSEHELTCQAEGYPKAE-VIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRI 182
Query: 542 T 542
Sbjct: 183 N 183
Score = 35.7 bits (82), Expect = 0.051
Identities = 24/99 (24%), Positives = 34/99 (34%), Gaps = 19/99 (19%)
Query: 643 GDTARVECSAFSIPPPE----KVTWS---------YRGEEIGVGSSDDY----SVLEDPL 685
G +EC + V W GEE Y +L+D L
Sbjct: 16 GSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQL 75
Query: 686 KEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
G + L I + + GVY C +S G+D I +K
Sbjct: 76 SLG-NAALQITDVKLQDAGVYRCMISYG-GADYKRITVK 112
Score = 34.6 bits (79), Expect = 0.10
Identities = 27/214 (12%), Positives = 54/214 (25%), Gaps = 62/214 (28%)
Query: 241 SVIGSNRLVE---GTDVRLYCKA--EANPSHMKYRWY--INDQPVPAAASATE------- 286
+V L G+++ + CK E Y + D+ + E
Sbjct: 3 TVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHS 62
Query: 287 -------------------LYLTNITRH---------QHDSIVKCEVQVSVIGSNRLV-- 316
L +T++ + + V V +
Sbjct: 63 SYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYGGADYKRITVKVNAPYNKINQ 122
Query: 317 -------EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAAS-------ATELYLTNIT-- 360
++ L C+AE P + W +D V + + +L+ T
Sbjct: 123 RILVVDPVTSEHELTCQAEGYPKA-EVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLR 181
Query: 361 -RHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRF 393
+ I C + + L + P
Sbjct: 182 INTTTNEIFYCTFRRLDPEENHTAELVIPELPLA 215
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 98.5 bits (245), Expect = 2e-23
Identities = 35/202 (17%), Positives = 59/202 (29%), Gaps = 23/202 (11%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----------------SDKVV 587
VQV + L C G +P + W +D+V
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 588 GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLK--GRPTIISHRTQFGIP-GD 644
+S +T + G Y C S + E +++L P+ + + G+
Sbjct: 62 FSSSGITFSSVTRKDNGEYTCMVSE-EGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGN 120
Query: 645 TARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDP--LKEGIKSTLIIRESRHDH 702
A + CS PP + +W G + + + + LI
Sbjct: 121 RAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFD 180
Query: 703 FGVYNCSVSNPYGSDSVEIMLK 724
G Y C N YG+
Sbjct: 181 SGEYYCQAQNGYGTAMRSEAAH 202
Score = 94.3 bits (234), Expect = 6e-22
Identities = 38/211 (18%), Positives = 61/211 (28%), Gaps = 13/211 (6%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
D + L C +G ++W + +
Sbjct: 3 SVYTAQSDVQVPENESIKLTCTY---SGFSSPRVEWKFVQGSTTALVCYNSQITAPYADR 59
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLY 144
+ V D+ Y C VS G+ LTVLVPP P I
Sbjct: 60 VTFSSSGITFSSVTRKDNGEYTCMVSEEG-GQ-NYGEVSIHLTVLVPPSKPTISV--PSS 115
Query: 145 TTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRT--TVKSTLVLTP 202
T L C +G PP+E +W ++++ A ++ T L+ P
Sbjct: 116 VTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDP 175
Query: 203 KKEHHNTTFTCQAQNTADRTYKVARLKLLVK 233
+ + CQAQN + +
Sbjct: 176 VTAFDSGEYYCQAQNGYGTAMRSEAAHMDAV 206
Score = 76.9 bits (189), Expect = 5e-16
Identities = 27/176 (15%), Positives = 56/176 (31%), Gaps = 14/176 (7%)
Query: 127 TVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITW--IDGTGTVMSNVRVTEE 184
+V ++ + ++ I+L C + +G + W + G+ T +
Sbjct: 3 SVYTAQSDVQVPENES--------IKLTC-TYSGFSSPRVEWKFVQGSTTALVCYNSQIT 53
Query: 185 ASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIG 244
A R T S + + N +TC + Y + L V P +
Sbjct: 54 APYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISV- 112
Query: 245 SNRLVEGTDVRLYCKA-EANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDS 299
+ + G L C + +P +Y W+ + + A + N +
Sbjct: 113 PSSVTIGNRAVLTCSEHDGSPP-SEYSWFKDGISMLTADAKKTRAFMNSSFTIDPK 167
Score = 75.4 bits (185), Expect = 2e-15
Identities = 28/168 (16%), Positives = 53/168 (31%), Gaps = 21/168 (12%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----------------SDKVV 433
VQV + L C G +P + W +D+V
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 434 GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLK--GRPTIISHRTQFGIP-GD 490
+S +T + G Y C S + E +++L P+ + + G+
Sbjct: 62 FSSSGITFSSVTRKDNGEYTCMVSE-EGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGN 120
Query: 491 TARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSET 538
A + CS PP + +W G + + + + D ++
Sbjct: 121 RAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKS 168
Score = 66.1 bits (161), Expect = 3e-12
Identities = 36/201 (17%), Positives = 58/201 (28%), Gaps = 39/201 (19%)
Query: 316 VEGTDVRLYCKAEANP-----------SHMKYRWYINDQPVPAAASAT----ELYLTNIT 360
E ++L C S Y + P A T + +++T
Sbjct: 14 PENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVT 73
Query: 361 RHQHDSIVKCEVHNDVGK--SEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDV-DGN 417
R + + C V + G+ E S L V P V G L C DG+
Sbjct: 74 R-KDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGS 132
Query: 418 PAPEITWIHED-----------------SDKVVGNSPNLTLLMTSDDLAGRYYCKAS-VM 459
P E +W + S + S +L + +G YYC+A
Sbjct: 133 PPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGY 192
Query: 460 GFPEVGAEATVYLKGRPTIIS 480
G ++ +
Sbjct: 193 G--TAMRSEAAHMDAVELNVG 211
Score = 41.9 bits (98), Expect = 4e-04
Identities = 24/192 (12%), Positives = 51/192 (26%), Gaps = 53/192 (27%)
Query: 249 VEGTDVRLYCKAEANP-----------SHMKYRWYINDQPVPAAASAT----ELYLTNIT 293
E ++L C S Y + P A T + +++T
Sbjct: 14 PENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVT 73
Query: 294 RHQH------------DSIVKCEVQVSVIG---------SNRLVEGTDVRLYCKA-EANP 331
R + + + + ++V+ + + G L C + +P
Sbjct: 74 RKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSP 133
Query: 332 SHMKYRWYINDQPVPAAASATELYLTNITRHQHDS-----IVK----------CEVHNDV 376
+Y W+ + + A + N + C+ N
Sbjct: 134 P-SEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGY 192
Query: 377 GKSEDSETLDVT 388
G + SE +
Sbjct: 193 GTAMRSEAAHMD 204
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 100 bits (251), Expect = 3e-23
Identities = 48/364 (13%), Positives = 99/364 (27%), Gaps = 90/364 (24%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAG 450
P + +V D +N CD P E +W + +SP L + S
Sbjct: 4 PFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDY--VSTEDSPRLE--VESKG--- 55
Query: 451 RYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWS 510
+ M F ++G + D C
Sbjct: 56 ----NKTKMTFKDLGMD----------------------DLGIYSCDVTD---------- 79
Query: 511 YRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVD- 569
G + Y + + K + + + + +V++ V +
Sbjct: 80 ------TDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEK 133
Query: 570 GNPAPEITWIHEDSD---------KVVGNSPNLTLLM---TSDDLAGRYYCKAS------ 611
+ ++ +I + + + N+ + + M +D G Y +
Sbjct: 134 LSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDED-EGTYTFQLQDGKATN 192
Query: 612 -------VMGFPEVGAEATVYL-----KGRPTIISHRTQFGIPGDTARVECSAFSIPPPE 659
F ++ EA K P + + + ++C +I
Sbjct: 193 HSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKET 252
Query: 660 KVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSV 719
+ W EI + + + TL+I E G+Y + + G D
Sbjct: 253 HIVWYKDEREIS--VDEKHDFKDG------ICTLLITEFSKKDAGIYEVILKDDRGKDKS 304
Query: 720 EIML 723
+ L
Sbjct: 305 RLKL 308
Score = 90.4 bits (224), Expect = 9e-20
Identities = 31/274 (11%), Positives = 72/274 (26%), Gaps = 35/274 (12%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEG 88
+ + C + W+KD + R + +
Sbjct: 5 FTKEVVVNVDDDGVISLNFECDKMTPKSEFSWSKDY------VSTEDSPRLEV--ESKGN 56
Query: 89 DYSLEIYPVMLDDDARYQCQVS------TGILGEPAIRSRFATLTVLVPPDPPRIVQGDT 142
+ + +DD Y C V+ + L + R L+ +
Sbjct: 57 KTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELA 116
Query: 143 LYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRRTTVKSTLVLT 201
+ E ++ + A++ +I + + + + R T + +
Sbjct: 117 VEILEKGQVRFWMQAEKLSGNAKVNYIFNEK-----EIFEGPKYKMHIDRNTGIIEMFME 171
Query: 202 PKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIG---------------SN 246
++ T+T Q Q+ + L V + + S
Sbjct: 172 KLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSW 231
Query: 247 RLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPA 280
+ +V L CK WY +++ +
Sbjct: 232 EVTGECNVLLKCKVANIKKETHIVWYKDEREISV 265
Score = 83.9 bits (207), Expect = 2e-17
Identities = 32/203 (15%), Positives = 57/203 (28%), Gaps = 26/203 (12%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH-----EDSDKV----VGNSPNLTL 595
P + +V D +N CD P E +W EDS ++ GN +T
Sbjct: 4 PFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTF 62
Query: 596 LMTSDDLAGRYYCKA-----SVMGFPEVGAEATVYLKGRPTIISHRTQFGIP-------G 643
D G Y C + E L
Sbjct: 63 KDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEK 122
Query: 644 DTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHF 703
R A + KV + + +EI Y + D + + + + + +
Sbjct: 123 GQVRFWMQAEKLSGNAKVNYIFNEKEIF--EGPKYKMHID--RNTGIIEMFMEKLQDEDE 178
Query: 704 GVYNCSVSNPYGSDSVEIMLKPQ 726
G Y + + ++ ++L
Sbjct: 179 GTYTFQLQDGKATNHSTVVLVGD 201
Score = 76.6 bits (188), Expect = 4e-15
Identities = 26/267 (9%), Positives = 70/267 (26%), Gaps = 57/267 (21%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA--------SATELYLTNITRHQHDSIV 368
+ C + P ++ W + + + T++ ++ I
Sbjct: 17 GVISLNFECD-KMTPK-SEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGM-DDLGIY 73
Query: 369 KCEVHNDVGKSEDSETLDVTYG------------PRFRARPYSVQVDRGAGVNLLCDVD- 415
C+V + G + + +V++ V +
Sbjct: 74 SCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEK 133
Query: 416 GNPAPEITWIHEDSD---------KVVGNSPNLTLLM---TSDDLAGRYYCKAS------ 457
+ ++ +I + + + N+ + + M +D G Y +
Sbjct: 134 LSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDED-EGTYTFQLQDGKATN 192
Query: 458 -------VMGFPEVGAEATVYL-----KGRPTIISHRTQFGIPGDTARVECSAFSIPPPE 505
F ++ EA K P + + + ++C +I
Sbjct: 193 HSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKET 252
Query: 506 KVTWSYRGEEIGVGSSDDYSVHNDVGK 532
+ W EI + + + +
Sbjct: 253 HIVWYKDEREI--SVDEKHDFKDGICT 277
Score = 68.9 bits (168), Expect = 1e-12
Identities = 25/219 (11%), Positives = 65/219 (29%), Gaps = 30/219 (13%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVI--DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDE 86
+ +V + + + ++ + + +Y M
Sbjct: 109 VPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNE------KEIFEGPKYKMHIDRN 162
Query: 87 EGDYSLEIYPVMLDDDARYQCQVS------------TGILGEPAIRSRFATLTVLVPPDP 134
G + + + +D+ Y Q+ G + + + +
Sbjct: 163 TGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQG 222
Query: 135 PRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTV 194
P V+ + T + + L+C AN K I W + + + + +
Sbjct: 223 PHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGI------- 275
Query: 195 KSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVK 233
TL++T + + ++ + +RLKL+ +
Sbjct: 276 -CTLLITEFSKKDAGIYEVILKDDRGKD--KSRLKLVDE 311
Score = 61.2 bits (148), Expect = 4e-10
Identities = 47/365 (12%), Positives = 92/365 (25%), Gaps = 112/365 (30%)
Query: 134 PPRIVQG-DTLYTTEDREIELECISANGKPPAEITWI-DGTG-TVMSNVRVTEEASVDGR 190
P + + + EC P +E +W D + V + +
Sbjct: 3 DPFTKEVVVNVDDDGVISLNFEC--DKMTPKSEFSWSKDYVSTEDSPRLEVESKGN---- 56
Query: 191 RTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVE 250
K+ + ++C +T +A L+ + K +++ ++
Sbjct: 57 ----KTKMTFKDLGMDDLGIYSCDVTDTDG----IASSYLIDEEELKRLLALSHEHKFP- 107
Query: 251 GTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVI 310
VP VK E+ V +
Sbjct: 108 --------------------------TVP---------------------VKSELAVEI- 119
Query: 311 GSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVP----------AAASATELYLTNIT 360
+E VR + +AE + K + N++ + E+++ +
Sbjct: 120 -----LEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQ 174
Query: 361 RHQHDS-IVKCEVHNDVGKSEDSETLDV-------------------TYGPRFRARPYSV 400
D ++ + + + L GP F S
Sbjct: 175 --DEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF-VEYLSW 231
Query: 401 QVDRGAGVNLLCDVDGNPAP-EITWIHED-----SDK--VVGNSPNLTLLMTSDDLAGRY 452
+V V L C V I W ++ +K L + S AG Y
Sbjct: 232 EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIY 291
Query: 453 YCKAS 457
Sbjct: 292 EVILK 296
Score = 55.4 bits (133), Expect = 3e-08
Identities = 22/129 (17%), Positives = 39/129 (30%), Gaps = 15/129 (11%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
+ EC P E +WS S V G K+ + ++ D
Sbjct: 18 VISLNFECDK-MTPKSE-FSWSKDYVSTE--DSPRLEVESK----GNKTKMTFKDLGMDD 69
Query: 703 FGVYNCSVSNPYGSDSVEIMLKPQKSFPLLLILTGVI-------GCVVILVALTMVVILC 755
G+Y+C V++ G S ++ + + L L V ++ V
Sbjct: 70 LGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWM 129
Query: 756 QRKVKKPPP 764
Q +
Sbjct: 130 QAEKLSGNA 138
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 98.0 bits (244), Expect = 3e-23
Identities = 45/208 (21%), Positives = 73/208 (35%), Gaps = 27/208 (12%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHE-------DSDKVVGNSPNLTLLM 597
PRF P G + +C G+P P+I W + + + + + ++L
Sbjct: 7 PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLR 66
Query: 598 -----TSDDLAGRYYCKAS-VMGFPEVGAEATVYLK-----GRPTIISH-RTQFGIPGDT 645
T D Y C AS +G V TV + G PTI + + T
Sbjct: 67 IQPLRTPRD-EAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRT 125
Query: 646 ARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGV 705
A + C+A P PE +TW + +++ G L I +S G
Sbjct: 126 ATMLCAASGNPDPE-ITWFKDFLPVDTSNNNGRIKQLRSESIG---ALQIEQSEESDQGK 181
Query: 706 YNCSVSNPYGSD---SVEIMLKPQKSFP 730
Y C +N G+ + ++ K
Sbjct: 182 YECVATNSAGTRYSAPANLYVRGTKHHH 209
Score = 87.2 bits (216), Expect = 2e-19
Identities = 51/202 (25%), Positives = 70/202 (34%), Gaps = 30/202 (14%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
+F P DQT V G + C+ TG + W K + R+ +I
Sbjct: 8 RFTRTPVDQTGVSGGVASFICQA---TGDPRPKIVWNKKGKKVSN-------QRFEVIEF 57
Query: 85 DEEGDYSLEIYPVMLDDDA-RYQCQVSTGILGEPAIRSRFATLTVLVPPD----PPRIVQ 139
D+ L I P+ D Y+C S +GE S LTVL P I
Sbjct: 58 DDGSGSVLRIQPLRTPRDEAIYECVASNN-VGE---ISVSTRLTVLREDQIPRGFPTIDM 113
Query: 140 GDTLYT-TEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRRTTVKST 197
G L R + C +A+G P EITW D SN +
Sbjct: 114 GPQLKVVERTRTATMLC-AASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSES----IGA 168
Query: 198 LVLTPKKEHHNTTFTCQAQNTA 219
L + +E + C A N+A
Sbjct: 169 LQIEQSEESDQGKYECVATNSA 190
Score = 82.2 bits (203), Expect = 9e-18
Identities = 45/196 (22%), Positives = 68/196 (34%), Gaps = 33/196 (16%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA---------SATELYLTNITRHQHDS 366
V G C+A +P K W + V S + L + + + ++
Sbjct: 19 VSGGVASFICQATGDPR-PKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEA 77
Query: 367 IVKCEVHNDVGKSEDSETLDVTY-------GPRFRARPYSVQVDRGAGVNLLCDVDGNPA 419
I +C N+VG+ S L V P P V+R +LC GNP
Sbjct: 78 IYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPD 137
Query: 420 PEITWIHEDSDKVVGNSPNLTLLMTSDDL-------------AGRYYCKAS-VMGFPEVG 465
PEITW D V ++ N + + G+Y C A+ G
Sbjct: 138 PEITWFK-DFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGT-RYS 195
Query: 466 AEATVYLKGRPTIISH 481
A A +Y++G H
Sbjct: 196 APANLYVRGTKHHHHH 211
Score = 77.2 bits (190), Expect = 4e-16
Identities = 35/162 (21%), Positives = 57/162 (35%), Gaps = 21/162 (12%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHE-------DSDKVVGNSPNLTLLM 443
PRF P G + +C G+P P+I W + + + + + ++L
Sbjct: 7 PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLR 66
Query: 444 -----TSDDLAGRYYCKAS-VMGFPEVGAEATVYLK-----GRPTIISH-RTQFGIPGDT 491
T D Y C AS +G V TV + G PTI + + T
Sbjct: 67 IQPLRTPRD-EAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRT 125
Query: 492 ARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKS 533
A + C+A P PE +TW + +++
Sbjct: 126 ATMLCAASGNPDPE-ITWFKDFLPVDTSNNNGRIKQLRSESI 166
Score = 68.7 bits (168), Expect = 4e-13
Identities = 20/111 (18%), Positives = 32/111 (28%), Gaps = 15/111 (13%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAMIGS 84
M PQ + T+ C +G + W KD + + +
Sbjct: 110 TIDMGPQLKVVERTRTATMLCAA---SGNPDPEITWFKDFLPVDTSN-----NNGRIKQL 161
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPP 135
E +L+I D +Y+C + G S A L V
Sbjct: 162 RSESIGALQIEQSEESDQGKYECVATN-SAGT--RYSAPANLYVRGTKHHH 209
Score = 61.4 bits (149), Expect = 1e-10
Identities = 28/159 (17%), Positives = 41/159 (25%), Gaps = 16/159 (10%)
Query: 127 TVLVPPDPPRIVQG-DTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEE 184
T PP R + C A G P +I W G V E
Sbjct: 2 TGETPP---RFTRTPVDQTGVSGGVASFIC-QATGDPRPKIVWNKKGKKVSNQRFEVIEF 57
Query: 185 ASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIG 244
G ++ + + C A N RL +L + I
Sbjct: 58 DDGSGSVLRIQPL-----RTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTID 112
Query: 245 SN----RLVEGTDVRLYCKAEANPSHMKYRWYINDQPVP 279
+ + C A NP + W+ + PV
Sbjct: 113 MGPQLKVVERTRTATMLCAASGNPD-PEITWFKDFLPVD 150
Score = 43.3 bits (102), Expect = 1e-04
Identities = 27/200 (13%), Positives = 54/200 (27%), Gaps = 55/200 (27%)
Query: 249 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA---------SATELYLTNITRHQHDS 299
V G C+A +P K W + V S + L + + + ++
Sbjct: 19 VSGGVASFICQATGDPR-PKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEA 77
Query: 300 IVKCE-----------VQVSVIGSNRL----------------VEGTDVRLYCKAEANPS 332
I +C +++V+ +++ + C A NP
Sbjct: 78 IYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPD 137
Query: 333 HMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVK----------CEVHNDVGKSEDS 382
+ W+ + PV + + + I + C N G +
Sbjct: 138 -PEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSA 196
Query: 383 E-TLDVTYGPRFRARPYSVQ 401
L V R +
Sbjct: 197 PANLYV------RGTKHHHH 210
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 97.4 bits (242), Expect = 4e-23
Identities = 33/188 (17%), Positives = 61/188 (32%), Gaps = 14/188 (7%)
Query: 38 TAVVGSRVTLPCRVIDKTG-----VLQWTKDDFALGPHRN--LSGFDRYAMIGS-DEEGD 89
T V TL C + W K+ + + ++ + Y D +
Sbjct: 5 TKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNN 64
Query: 90 YSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDR 149
S+ I + D+ Y+C V + R A +T+ V D P D T +
Sbjct: 65 LSIVILALRPSDEGTYECVVLKY-EKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSN- 122
Query: 150 EIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNT 209
+ C ++ G P ++W++ + + + V S L N
Sbjct: 123 IRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETE-LYAVSSKLDFNM---TTNH 178
Query: 210 TFTCQAQN 217
+F C +
Sbjct: 179 SFMCLIKY 186
Score = 48.8 bits (116), Expect = 2e-06
Identities = 25/136 (18%), Positives = 45/136 (33%), Gaps = 12/136 (8%)
Query: 592 NLTLLM---TSDDLAGRYYCKASVMG----FPEVGAEATVYLKGRPTIISHRTQFGIPGD 644
NL++++ D G Y C E AE T+ +K S +
Sbjct: 64 NLSIVILALRPSD-EGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSN 122
Query: 645 TARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFG 704
R+ CS P ++W GEE+ ++ E L + S L + +
Sbjct: 123 IRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYA-VSSKLDFNMTTN---H 178
Query: 705 VYNCSVSNPYGSDSVE 720
+ C + + +
Sbjct: 179 SFMCLIKYGHLRVNQT 194
Score = 34.2 bits (78), Expect = 0.13
Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 8/91 (8%)
Query: 438 NLTLLM---TSDDLAGRYYCKASVMG----FPEVGAEATVYLKGRPTIISHRTQFGIPGD 490
NL++++ D G Y C E AE T+ +K S +
Sbjct: 64 NLSIVILALRPSD-EGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSN 122
Query: 491 TARVECSAFSIPPPEKVTWSYRGEEIGVGSS 521
R+ CS P ++W GEE+ ++
Sbjct: 123 IRRIICSTSGGFPEPHLSWLENGEELNAINT 153
Score = 28.8 bits (64), Expect = 6.5
Identities = 18/160 (11%), Positives = 37/160 (23%), Gaps = 36/160 (22%)
Query: 305 VQVSVIGSNRLVEGTDVRLYCKAEANP-SHMKYR--WYINDQPVPAAASATE-------- 353
+ V+ L C + + R W + V S
Sbjct: 2 IHVTK------EVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKN 55
Query: 354 -----------LYLTNITRHQHDS-IVKCEVHNDVGKSEDSETLDVT----YGPRFRARP 397
+ + + D +C V + E L
Sbjct: 56 RTIFDITNNLSIVILALRPS--DEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSI 113
Query: 398 YSVQVDRGAGVNLLCDVDG-NPAPEITWIHEDSDKVVGNS 436
++ ++C G P P ++W+ + N+
Sbjct: 114 SDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINT 153
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 100 bits (250), Expect = 6e-23
Identities = 44/189 (23%), Positives = 69/189 (36%), Gaps = 16/189 (8%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVVGNSPNLTLLM-- 597
P + + + VD G V L C V+G + WI + + G P+L L +
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLAN 218
Query: 598 -TSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSI 655
TSD C A +G AE +V + S + + + S
Sbjct: 219 VTSDLNRKNVTCWAENDVGR----AEVSVQVNVSFP-ASVQLHTAVEMHHWCIPFSVDGQ 273
Query: 656 PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIK-STLIIRESRHDHFGVYNCSVSNPY 714
P P + W + G + S LE E ++ L + + H + G Y +NP+
Sbjct: 274 PAPS-LRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPF 332
Query: 715 GSDSVEIML 723
G S IM
Sbjct: 333 GQASASIMA 341
Score = 72.5 bits (177), Expect = 1e-13
Identities = 32/162 (19%), Positives = 51/162 (31%), Gaps = 16/162 (9%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVVGNSPNLTLLM-- 443
P + + + VD G V L C V+G + WI + + G P+L L +
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLAN 218
Query: 444 -TSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSI 501
TSD C A +G AE +V + S + + + S
Sbjct: 219 VTSDLNRKNVTCWAENDVGR----AEVSVQVNVSFP-ASVQLHTAVEMHHWCIPFSVDGQ 273
Query: 502 PPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSE-TLDVT 542
P P + W + G + S L +
Sbjct: 274 PAPS-LRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLN 314
Score = 69.4 bits (169), Expect = 1e-12
Identities = 41/233 (17%), Positives = 69/233 (29%), Gaps = 37/233 (15%)
Query: 266 HMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLV-EGTDVRLY 324
+++ ++ + + + V N V G DV L
Sbjct: 120 ALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNASCGVPTLKVQVPNASVDVGDDVLLR 179
Query: 325 CKAEANPS-HMKYRWYINDQPVPAAAS------ATELYLTNITRHQHDSIVKCEVHNDVG 377
C+ E W + + A + L L N+T + V C NDVG
Sbjct: 180 CQVEGRGLEQA--GWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVG 237
Query: 378 KSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED--------- 428
++E S ++V+ F A + VDG PAP + W+
Sbjct: 238 RAEVSVQVNVS----FPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFI 293
Query: 429 -----SDKVVGNSPNLTLLM---TSDDLAGRYYCKAS-VMGFPEVGAEATVYL 472
+ L + T + G Y A+ G A A++
Sbjct: 294 FTEFLEPAANETVRHGCLRLNQPTHVN-NGNYTLLAANPFGQ----ASASIMA 341
Score = 69.0 bits (168), Expect = 2e-12
Identities = 34/212 (16%), Positives = 59/212 (27%), Gaps = 30/212 (14%)
Query: 28 QKFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIG 83
++ + + VG V L C+V G W + ++
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQV---EGRGLEQAGWILTELEQSAT----------VMK 205
Query: 84 SDEEGDYSLEIYPVMLDDDA-RYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDT 142
S L + V D + C +G A ++V V P VQ T
Sbjct: 206 SGGLPSLGLTLANVTSDLNRKNVTCWAE-NDVG-------RAEVSVQVNVSFPASVQLHT 257
Query: 143 LYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVK-STLVLT 201
+ S +G+P + W+ + + E TV+ L L
Sbjct: 258 AVEMH--HWCIPF-SVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLN 314
Query: 202 PKKEHHNTTFTCQAQNTADRTYKVARLKLLVK 233
+N +T A N + +
Sbjct: 315 QPTHVNNGNYTLLAANPFGQASASIMAAFMDN 346
Score = 55.9 bits (134), Expect = 3e-08
Identities = 9/97 (9%), Positives = 18/97 (18%), Gaps = 8/97 (8%)
Query: 630 PTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGI 689
+ GD + C + W E +
Sbjct: 160 TLKVQVPNASVDVGDDVLLRCQVEGRGLEQ-AGWILTELEQSATVMKSGGLPSL------ 212
Query: 690 KSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726
+ + + C N G V + +
Sbjct: 213 -GLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVS 248
Score = 48.6 bits (115), Expect = 6e-06
Identities = 24/169 (14%), Positives = 43/169 (25%), Gaps = 18/169 (10%)
Query: 132 PDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRR 191
P VQ ++ L C G+ + WI A+V
Sbjct: 157 GVPTLKVQVPNASVDVGDDVLLRC-QVEGRGLEQAGWILTELEQ--------SATVMKSG 207
Query: 192 TTVKSTLVLTPKKEHHNT-TFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVE 250
L L N TC A+N R ++ + + ++ +V +
Sbjct: 208 GLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHH---- 263
Query: 251 GTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDS 299
+ + P RW N + + +L
Sbjct: 264 ---WCIPFSVDGQP-APSLRWLFNGSVLNETSFIFTEFLEPAANETVRH 308
Score = 45.9 bits (108), Expect = 5e-05
Identities = 31/183 (16%), Positives = 48/183 (26%), Gaps = 42/183 (22%)
Query: 247 RLVEGTDVRLYCKAEANPS-HMKYRWYINDQPVPAAAS------ATELYLTNITRHQHDS 299
+ G DV L C+ E W + + A + L L N+T +
Sbjct: 169 SVDVGDDVLLRCQVEGRGLEQA--GWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRK 226
Query: 300 IVKC-------------EVQVSVIGSNRLVEGT---DVRLYCKAEANPSHMKYRWYINDQ 343
V C +V VS S +L + + P RW N
Sbjct: 227 NVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQP-APSLRWLFNGS 285
Query: 344 PVPAAASATE---------------LYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVT 388
+ + L L T H ++ N G++ S
Sbjct: 286 VLNETSFIFTEFLEPAANETVRHGCLRLNQPT-HVNNGNYTLLAANPFGQASASIMAAFM 344
Query: 389 YGP 391
P
Sbjct: 345 DNP 347
Score = 42.4 bits (99), Expect = 5e-04
Identities = 15/105 (14%), Positives = 24/105 (22%), Gaps = 6/105 (5%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVI-DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEE 87
F Q TAV +P V L+W + L +
Sbjct: 248 SFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVR 307
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP 132
L + ++ Y G+ S + P
Sbjct: 308 HG-CLRLNQPTHVNNGNYTLLA-ANPFGQ---ASASIMAAFMDNP 347
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 95.3 bits (237), Expect = 1e-22
Identities = 41/189 (21%), Positives = 66/189 (34%), Gaps = 31/189 (16%)
Query: 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDL- 602
G + P + V +G V L C V+G P+I W+ + VV N L + ++
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKD--GAVVQNLDQLYIPVSEQHWI 59
Query: 603 ------------AGRYYCKASVMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVE 649
AGRY+C+ G E+ + ++G P + P ++
Sbjct: 60 GFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLS 119
Query: 650 CSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCS 709
C A P P + W +IG G + SVL +++C
Sbjct: 120 CEAVGPPEPVTIVWWRGTTKIG-GPAPSPSVLNVTGVT-------------QS-TMFSCE 164
Query: 710 VSNPYGSDS 718
N G S
Sbjct: 165 AHNLKGLAS 173
Score = 87.2 bits (216), Expect = 8e-20
Identities = 48/197 (24%), Positives = 63/197 (31%), Gaps = 37/197 (18%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
K P T G V L C V G+ +QW KD + D+ + S
Sbjct: 4 KLMGAPVKLTVSQGQPVKLNCSV---EGMEEPDIQWVKDGAVVQNL------DQLYIPVS 54
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQG-DTL 143
++ L + V D RY CQV G S+ LTV P L
Sbjct: 55 EQHWIGFLSLKSVERSDAGRYWCQVEDGG-ETEI--SQPVWLTVEG---VPFFTVEPKDL 108
Query: 144 YTTEDREIELECISANGKP-PAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTP 202
+ +L C A G P P I W GT + S VL
Sbjct: 109 AVPPNAPFQLSC-EAVGPPEPVTIVWWRGTTKI---------------GGPAPSPSVLNV 152
Query: 203 KKEHHNTTFTCQAQNTA 219
+T F+C+A N
Sbjct: 153 TGVTQSTMFSCEAHNLK 169
Score = 86.4 bits (214), Expect = 2e-19
Identities = 38/159 (23%), Positives = 62/159 (38%), Gaps = 17/159 (10%)
Query: 390 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDL- 448
G + P + V +G V L C V+G P+I W+ + VV N L + ++
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKD--GAVVQNLDQLYIPVSEQHWI 59
Query: 449 ------------AGRYYCKASVMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVE 495
AGRY+C+ G E+ + ++G P + P ++
Sbjct: 60 GFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLS 119
Query: 496 CSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSE 534
C A P P + W +IG G + SV N G ++
Sbjct: 120 CEAVGPPEPVTIVWWRGTTKIG-GPAPSPSVLNVTGVTQ 157
Score = 72.9 bits (179), Expect = 6e-15
Identities = 25/162 (15%), Positives = 54/162 (33%), Gaps = 11/162 (6%)
Query: 134 PPRIVQGDTLYT-TEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRR 191
+++ T ++ + ++L C S G +I W+ DG + V+ ++ +
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNC-SVEGMEEPDIQWVKDG-----AVVQNLDQLYIPVSE 55
Query: 192 TTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEG 251
L L + + CQ ++ + + L V+ P V +
Sbjct: 56 QHWIGFLSLKSVERSDAGRYWCQVEDGGETEIS-QPVWLTVEGVPFFTV-EPKDLAVPPN 113
Query: 252 TDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNIT 293
+L C+A P + W+ + A + L
Sbjct: 114 APFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSP-SVLNVTG 154
Score = 71.8 bits (176), Expect = 2e-14
Identities = 31/155 (20%), Positives = 47/155 (30%), Gaps = 16/155 (10%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT----------ELYLTNITRHQHD 365
+G V+L C E +W + V L L ++ R D
Sbjct: 15 SQGQPVKLNCSVEGMEE-PDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERS--D 71
Query: 366 SIV-KCEVHNDVGKSEDSE-TLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAP-EI 422
+ C+V + L V P F P + V A L C+ G P P I
Sbjct: 72 AGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTI 131
Query: 423 TWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS 457
W + L +T + + C+A
Sbjct: 132 VWWRGTTKIGGPAPSPSVLNVTGVTQSTMFSCEAH 166
Score = 69.1 bits (169), Expect = 2e-13
Identities = 29/165 (17%), Positives = 45/165 (27%), Gaps = 30/165 (18%)
Query: 476 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIG----------------- 517
++ G ++ CS + P+ + W G +
Sbjct: 3 LKLMGAPVKLTVSQGQPVKLNCSVEGMEEPD-IQWVKDGAVVQNLDQLYIPVSEQHWIGF 61
Query: 518 -----VGSSD--DYS--VHNDVGKSEDSE-TLDVTYGPRFRARPYSVQVDRGAGVNLLCD 567
V SD Y V + L V P F P + V A L C+
Sbjct: 62 LSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCE 121
Query: 568 VDGNPAP-EITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS 611
G P P I W + L +T + + C+A
Sbjct: 122 AVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGVTQSTMFSCEAH 166
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 92.5 bits (230), Expect = 2e-21
Identities = 44/204 (21%), Positives = 66/204 (32%), Gaps = 36/204 (17%)
Query: 537 ETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLL 596
ET + P +P + V G + C G+P P I W + KV G T+L
Sbjct: 1 ET--GAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRK-NGKKVSGTQSRYTVL 57
Query: 597 MTSDDL-------------AGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISHRTQFGIP 642
+ Y C A +G V A+AT+ + +
Sbjct: 58 EQPGGISILRIEPVRAGRDDAPYECVAENGVGDA-VSADATLTIYEGDKTPAGFPVITQG 116
Query: 643 --------GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLI 694
G T + C A P P + W ++ S+ L+D L
Sbjct: 117 PGTRVIEVGHTVLMTCKAIGNPTPN-IYWIKNQTKV--DMSNPRYSLKD-------GFLQ 166
Query: 695 IRESRHDHFGVYNCSVSNPYGSDS 718
I SR + G Y C N G++
Sbjct: 167 IENSREEDQGKYECVAENSMGTEH 190
Score = 86.8 bits (215), Expect = 2e-19
Identities = 48/217 (22%), Positives = 76/217 (35%), Gaps = 35/217 (16%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
+ +PQ+Q VG + C G + W K+ + +SG +
Sbjct: 8 EIIRKPQNQGVRVGGVASFYCAA---RGDPPPSIVWRKNG------KKVSGTQSRYTVLE 58
Query: 85 DEEGDYSLEIYPVMLDDDA-RYQCQVSTGILGEPAIRSRFATLTVLV----PPDPPRIVQ 139
G L I PV D Y+C G +G+ S ATLT+ P P I Q
Sbjct: 59 QPGGISILRIEPVRAGRDDAPYECVAENG-VGD--AVSADATLTIYEGDKTPAGFPVITQ 115
Query: 140 GDTLYT-TEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKS-T 197
G + + C A G P I WI + + + R ++K
Sbjct: 116 GPGTRVIEVGHTVLMTC-KAIGNPTPNIYWI----------KNQTKVDMSNPRYSLKDGF 164
Query: 198 LVLTPKKEHHNTTFTCQAQNTADRTY-KVARLKLLVK 233
L + +E + C A+N+ + K L + V+
Sbjct: 165 LQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVR 201
Score = 75.6 bits (186), Expect = 2e-15
Identities = 49/260 (18%), Positives = 77/260 (29%), Gaps = 60/260 (23%)
Query: 383 ETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLL 442
ET + P +P + V G + C G+P P I W + KV G T+L
Sbjct: 1 ET--GAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRK-NGKKVSGTQSRYTVL 57
Query: 443 MTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIP 502
++ I D A EC A +
Sbjct: 58 EQPGGIS-----------------------------ILRIEPVRAGRDDAPYECVAEN-- 86
Query: 503 PPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGV 562
GVG + + + + P P + ++ G V
Sbjct: 87 --------------GVGDAVSADATLTIYEGDK----TPAGFPVITQGPGTRVIEVGHTV 128
Query: 563 NLLCDVDGNPAPEITW------IHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS-VMGF 615
+ C GNP P I W + + + L + + ++ G+Y C A MG
Sbjct: 129 LMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGT 188
Query: 616 PEVGAEATVYLKGRPTIISH 635
A +Y+K R H
Sbjct: 189 EHSKA-TNLYVKVRRVGTKH 207
Score = 64.8 bits (158), Expect = 9e-12
Identities = 21/112 (18%), Positives = 36/112 (32%), Gaps = 21/112 (18%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAMIGS 84
P + VG V + C+ G + W K+ + RY++
Sbjct: 112 VITQGPGTRVIEVGHTVLMTCKA---IGNPTPNIYWIKNQTKVDMSN-----PRYSL--- 160
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPR 136
D L+I +D +Y+C +G S+ L V V +
Sbjct: 161 ---KDGFLQIENSREEDQGKYECVAEN-SMGT--EHSKATNLYVKVRRVGTK 206
Score = 59.0 bits (143), Expect = 8e-10
Identities = 35/154 (22%), Positives = 48/154 (31%), Gaps = 15/154 (9%)
Query: 134 PPRIVQG-DTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRR 191
PP I++ C +A G PP I W +G + R T G
Sbjct: 6 PPEIIRKPQNQGVRVGGVASFYC-AARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGI- 63
Query: 192 TTVKSTLVLTPKKEHHNT-TFTCQAQNTA-DRTYKVARLKLLVKYAPKVQVSVIGSN--- 246
S L + P + + + C A+N D A L + VI
Sbjct: 64 ----SILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGT 119
Query: 247 -RLVEGTDVRLYCKAEANPSHMKYRWYINDQPVP 279
+ G V + CKA NP W N V
Sbjct: 120 RVIEVGHTVLMTCKAIGNP-TPNIYWIKNQTKVD 152
Score = 45.9 bits (109), Expect = 2e-05
Identities = 31/211 (14%), Positives = 54/211 (25%), Gaps = 48/211 (22%)
Query: 232 VKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAA-------ASA 284
+ P++ + + + G YC A +P W N + V
Sbjct: 3 GAHPPEI-IRKPQNQGVRVGGVASFYCAARGDPPP-SIVWRKNGKKVSGTQSRYTVLEQP 60
Query: 285 TELYLTNIT--RHQHDS-------------IVKCEVQVSVIGSNRL-------------- 315
+ + I R D V + +++ ++
Sbjct: 61 GGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTR 120
Query: 316 --VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAA-----ASATELYLTNITRHQHDSIV 368
G V + CKA NP W N V + L + N +
Sbjct: 121 VIEVGHTVLMTCKAIGNP-TPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSRE-EDQGKY 178
Query: 369 KCEVHNDVGKSEDSET-LDVTYGPRFRARPY 398
+C N +G T L V +
Sbjct: 179 ECVAENSMGTEHSKATNLYVKVRRVGTKHHH 209
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 91.9 bits (228), Expect = 3e-21
Identities = 37/201 (18%), Positives = 59/201 (29%), Gaps = 12/201 (5%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGSDEEGD 89
+ + V L C +G ++W D + +
Sbjct: 11 EPEVRIPENNPVKLSCAY---SGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP 67
Query: 90 YSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDR 149
+ V +D Y C VS + L VLVPP P + T
Sbjct: 68 TGITFKSVTREDTGTYTCMVSEEG--GNSYGEVKVKLIVLVPPSKPTVNI--PSSATIGN 123
Query: 150 EIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVK-STLVLTPKKEHHN 208
L C +G PP+E TW + +N + T S LV P
Sbjct: 124 RAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDT 183
Query: 209 TTFTCQAQNTADRTYKVARLK 229
++C+A+N ++
Sbjct: 184 GEYSCEARNGYGTPMTSNAVR 204
Score = 91.2 bits (226), Expect = 6e-21
Identities = 35/201 (17%), Positives = 56/201 (27%), Gaps = 22/201 (10%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDL-- 602
+ V++ V L C G +P + W + D N + + +D
Sbjct: 5 VTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVT 64
Query: 603 ---------------AGRYYCKASVMGFPEVGAEATVYLK--GRPTIISHRTQFGIP-GD 644
G Y C S E V L P+ + G+
Sbjct: 65 FLPTGITFKSVTREDTGTYTCMVSE-EGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGN 123
Query: 645 TARVECSAFSIPPPEKVTWSYRGEEIGVGS-SDDYSVLEDPLKEGIKSTLIIRESRHDHF 703
A + CS PP + TW G + S + L+
Sbjct: 124 RAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDT 183
Query: 704 GVYNCSVSNPYGSDSVEIMLK 724
G Y+C N YG+ ++
Sbjct: 184 GEYSCEARNGYGTPMTSNAVR 204
Score = 81.2 bits (200), Expect = 2e-17
Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 12/158 (7%)
Query: 124 ATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITW--IDGTGTVMSNVRV 181
++TV RI + + ++L C + +G + W G T +
Sbjct: 3 GSVTVHSSEPEVRIPENNP--------VKLSC-AYSGFSSPRVEWKFDQGDTTRLVCYNN 53
Query: 182 TEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVS 241
AS + R T + + + T+TC +Y ++KL+V P
Sbjct: 54 KITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTV 113
Query: 242 VIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVP 279
I + G L C + +Y W+ + +P
Sbjct: 114 NI-PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMP 150
Score = 67.3 bits (164), Expect = 1e-12
Identities = 34/191 (17%), Positives = 48/191 (25%), Gaps = 38/191 (19%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA----------------SATELYLTNI 359
E V+L C S + W + T + ++
Sbjct: 17 PENNPVKLSCAYSGFSS-PRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSV 75
Query: 360 TRHQHDSIVKCEVHNDVGKSEDSE--TLDVTYGPRFRARPYSVQVDRGAGVNLLCDV-DG 416
TR + C V + G S L V P G L C DG
Sbjct: 76 TR-EDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDG 134
Query: 417 NPAPEITWIHED----------------SDKVVGNSPNLTLLMTSDDLAGRYYCKAS-VM 459
+P E TW + S + + L S G Y C+A
Sbjct: 135 SPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGY 194
Query: 460 GFPEVGAEATV 470
G P +
Sbjct: 195 GTPMTSNAVRM 205
Score = 65.8 bits (160), Expect = 4e-12
Identities = 39/254 (15%), Positives = 56/254 (22%), Gaps = 73/254 (28%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAG 450
+ V++ V L C G +P + W + D N + +
Sbjct: 5 VTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKI---TASYED 61
Query: 451 RYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWS 510
R + + F V E DT C
Sbjct: 62 RVTFLPTGITFKSVTRE----------------------DTGTYTCMV------------ 87
Query: 511 YRGEEIGVGSSDDYSVHNDVGKSEDSE--TLDVTYGPRFRARPYSVQVDRGAGVNLLCDV 568
+ G S L V P G L C
Sbjct: 88 ----------------SEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSE 131
Query: 569 -DGNPAPEITWIHED----------------SDKVVGNSPNLTLLMTSDDLAGRYYCKAS 611
DG+P E TW + S + + L S G Y C+A
Sbjct: 132 QDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEAR 191
Query: 612 -VMGFPEVGAEATV 624
G P +
Sbjct: 192 NGYGTPMTSNAVRM 205
Score = 51.9 bits (124), Expect = 2e-07
Identities = 20/105 (19%), Positives = 33/105 (31%), Gaps = 13/105 (12%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGP-HRNLSGFDRYAMIG 83
+A +G+R L C D G W KD + ++ F + +
Sbjct: 109 SKPTVNIPSSATIGNRAVLTCSEQD--GSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVL 166
Query: 84 SDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
+ G L P+ D Y C+ G G P + +
Sbjct: 167 NPTTG--ELVFDPLSASDTGEYSCEARNG-YGTP---MTSNAVRM 205
Score = 44.2 bits (104), Expect = 7e-05
Identities = 31/207 (14%), Positives = 52/207 (25%), Gaps = 57/207 (27%)
Query: 236 PKVQVSVIGSNRLV-EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA------------ 282
V V + E V+L C S + W +
Sbjct: 3 GSVTVHSSEPEVRIPENNPVKLSCAYSGFSS-PRVEWKFDQGDTTRLVCYNNKITASYED 61
Query: 283 ----SATELYLTNITRH----------------QHDSIVKCEVQV-----SVIGSNRLVE 317
T + ++TR + VK V V +V +
Sbjct: 62 RVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATI 121
Query: 318 GTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT---------------ELYLTNITRH 362
G L C + +Y W+ + +P +T EL ++
Sbjct: 122 GNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSA- 180
Query: 363 QHDS-IVKCEVHNDVGKSEDSETLDVT 388
D+ CE N G S + +
Sbjct: 181 -SDTGEYSCEARNGYGTPMTSNAVRME 206
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 94.0 bits (233), Expect = 8e-21
Identities = 43/309 (13%), Positives = 80/309 (25%), Gaps = 70/309 (22%)
Query: 483 TQFGIPGDTARVECSAFS-------IPPPEKVTWSYRGEEIGVGSSDDYSVH-------- 527
+F + G+ + C P +TW V ++ +
Sbjct: 27 REFRLEGEPVALRCPQVPYWLWASVSPRIN-LTWHKNDSARTVPGEEETRMWAQDGALWL 85
Query: 528 ----------------NDVGKSEDSETLDVTYGPRFRA--RPYSVQVDRGAGVNLLC--- 566
N + S L V Y + L+C
Sbjct: 86 LPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDL 145
Query: 567 --DVDGNPAPEITW------IHEDSDKVVGNSPNLTLLMTS---DDLAGRYYCKAS-VMG 614
+I W + +D++K + LL+ +D AG Y C +
Sbjct: 146 SEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALED-AGYYRCVLTFAHE 204
Query: 615 FPEVGAEATVYLKGRPTIISHRTQFGIP--------GDTARVECSAFS---IPPPEKVTW 663
+ ++ L+ + P G + C F P + W
Sbjct: 205 GQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTT-MLW 263
Query: 664 SYRGEEIGVGSSDDYSVLEDPLKE-------GIKSTLIIRESRHDHFGV-YNCSVSNPYG 715
+ + V E P +E I+ LI + + + C V N
Sbjct: 264 WTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLS 323
Query: 716 SDSVEIMLK 724
++ +K
Sbjct: 324 FQTLRTTVK 332
Score = 84.0 bits (207), Expect = 2e-17
Identities = 35/215 (16%), Positives = 68/215 (31%), Gaps = 28/215 (13%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTG------VLQWTKDDFALGPHRNLSGFDRYAMIGSDEE 87
Q + + L C + + +QW KD L + +
Sbjct: 127 SYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDS------LLLDKDNEKFLS---VR 177
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD--PPRIVQG-DTLY 144
G L ++ V L+D Y+C ++ G+ +R L + + P I+ T+
Sbjct: 178 GTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTIS 237
Query: 145 TTEDREIELEC--ISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRR-------TTVK 195
+ + + C G P + W T + + + R+ ++
Sbjct: 238 ASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIE 297
Query: 196 STLVLTP-KKEHHNTTFTCQAQNTADRTYKVARLK 229
L+ P +E + F C NT +K
Sbjct: 298 VPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVK 332
Score = 82.4 bits (203), Expect = 7e-17
Identities = 41/272 (15%), Positives = 68/272 (25%), Gaps = 42/272 (15%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRVIDKTGV--------LQWTKDDFALGPHRNLSGFDRYAM 81
+ + + G V L C + L W K+D A + G + M
Sbjct: 21 RGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSAR----TVPGEEETRM 76
Query: 82 IGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGD 141
D +L + P + +D Y C L V D
Sbjct: 77 WAQD----GALWLLPALQEDSGTYVCTTRNAS-YC---DKMSIELRVFENTDAFLPFISY 128
Query: 142 TLYTTEDREIELECIS----ANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRRTTVKS 196
T L C K +I W D N + +
Sbjct: 129 PQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRG--------TT 180
Query: 197 TLVLTPKKEHHNTTFTCQAQNTADRTYKVARL--KLLVKYAPKVQVSVI----GSNRLVE 250
L++ + C + +L +K + + VI +
Sbjct: 181 HLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASL 240
Query: 251 GTDVRLYCKAEA---NPSHMKYRWYINDQPVP 279
G+ + + CK P W ND +
Sbjct: 241 GSRLTIPCKVFLGTGTPLTTMLWWTANDTHIE 272
Score = 77.4 bits (190), Expect = 2e-15
Identities = 42/256 (16%), Positives = 68/256 (26%), Gaps = 49/256 (19%)
Query: 316 VEGTDVRLYCK-------AEANPSHMKYRWYINDQPVPAAASATE--------LYLTNIT 360
+EG V L C A +P + W+ ND L+L
Sbjct: 31 LEGEPVALRCPQVPYWLWASVSPR-INLTWHKNDSARTVPGEEETRMWAQDGALWLLPAL 89
Query: 361 RHQHDSIV-KCEVHNDVGKSEDSETLDVTYGPRFRA--RPYSVQVDRGAGVNLLC----- 412
Q DS C N + S L V Y + L+C
Sbjct: 90 --QEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSE 147
Query: 413 DVDGNPAPEITW------IHEDSDKVVGNSPNLTLLMTS---DDLAGRYYCKAS-VMGFP 462
+I W + +D++K + LL+ +D AG Y C +
Sbjct: 148 FTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALED-AGYYRCVLTFAHEGQ 206
Query: 463 EVGAEATVYLKGRPTIISHRTQFGIP--------GDTARVECSAF---SIPPPEKVTWSY 511
+ ++ L+ + P G + C F P + W
Sbjct: 207 QYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTT-MLWWT 265
Query: 512 RGEEIGVGSSDDYSVH 527
+ + V
Sbjct: 266 ANDTHIESAYPGGRVT 281
Score = 70.9 bits (173), Expect = 3e-13
Identities = 26/199 (13%), Positives = 50/199 (25%), Gaps = 29/199 (14%)
Query: 545 PRFRARPYSVQVDRGAGVNLLC-------DVDGNPAPEITWIHEDSDKVVGNSPNLTLLM 597
G V L C +P +TW DS + V +
Sbjct: 19 RFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWA 78
Query: 598 TSDDL---------AGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISHRT-QFGIPGDTA 646
L +G Y C ++ E V+ + Q +
Sbjct: 79 QDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSG 138
Query: 647 RVECSAFSIP----PPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
+ C S K+ W + ++ + + L++ + +
Sbjct: 139 VLVCPDLSEFTRDKTDVKIQWYKDSLLLD--KDNEKFLSVRG-----TTHLLVHDVALED 191
Query: 703 FGVYNCSVSNPYGSDSVEI 721
G Y C ++ + I
Sbjct: 192 AGYYRCVLTFAHEGQQYNI 210
Score = 70.1 bits (171), Expect = 7e-13
Identities = 38/318 (11%), Positives = 70/318 (22%), Gaps = 85/318 (26%)
Query: 391 PRFRARPYSVQVDRGAGVNLLC-------DVDGNPAPEITWIHEDSDKVVGNSPNLTLLM 443
G V L C +P +TW DS + V +
Sbjct: 19 RFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWA 78
Query: 444 TSDDL---------AGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISHRT-QFGIPGDTA 492
L +G Y C ++ E V+ + Q +
Sbjct: 79 QDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSG 138
Query: 493 RVECSAFSIP----PPEKVTWSYRGEEI-------------------GVGSSD--DYS-- 525
+ C S K+ W + V D Y
Sbjct: 139 VLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCV 198
Query: 526 VHNDVGKSEDSETLDVT---------YGPRFRARPYSVQVDRGAGVNLLCDV---DGNPA 573
+ + + T + P + ++ G+ + + C V G P
Sbjct: 199 LTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPL 258
Query: 574 PEITWIHEDSDKVVGNSPNLTLL-----------------------MTSDDLAGRYYCKA 610
+ W + + P + +T +DL + C
Sbjct: 259 TTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVV 318
Query: 611 SVMGFPEVG-AEATVYLK 627
+ +K
Sbjct: 319 HN----TLSFQTLRTTVK 332
Score = 52.0 bits (124), Expect = 5e-07
Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 14/101 (13%)
Query: 637 TQFGIPGDTARVECSAFS-------IPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGI 689
+F + G+ + C P +TW V ++ +
Sbjct: 27 REFRLEGEPVALRCPQVPYWLWASVSPRIN-LTWHKNDSARTVPGEEETRMWAQ------ 79
Query: 690 KSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFP 730
L + + + G Y C+ N D + I L+ ++
Sbjct: 80 DGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTD 120
Score = 48.9 bits (116), Expect = 5e-06
Identities = 23/115 (20%), Positives = 39/115 (33%), Gaps = 16/115 (13%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDD-----FALGPHRNLSGFDRY 79
+ +A +GSR+T+PC+V TG + W + A R G +
Sbjct: 228 VIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQE 287
Query: 80 AMIGSDEEGDYSLEIYPVMLDDD-ARYQCQVSTGILGEPAIRSRFATLTVLVPPD 133
++ + L PV +D ++C V L + TV
Sbjct: 288 YSENNENYIEVPLIFDPVTREDLHMDFKCVVHN-TLSF-----QTLRTTVKEHHH 336
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 90.7 bits (225), Expect = 2e-20
Identities = 43/224 (19%), Positives = 64/224 (28%), Gaps = 37/224 (16%)
Query: 530 VGKSEDSETLDVTYGPRF----RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD- 584
+ + SE + P + + V V C GNP P + W+ +
Sbjct: 1 MAEDFVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEF 60
Query: 585 ---------KVVGNSPNLTL--LMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLK----- 627
KV +L + ++ SD G Y C G T +L
Sbjct: 61 KQEHRIGGYKVRNQHWSLIMESVVPSD--KGNYTCVVENEYGS----INHTYHLDVVERS 114
Query: 628 -GRPTIISH--RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDP 684
RP + + + G C +S P + W E+ G D
Sbjct: 115 RHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPH-IQWIKHVEKNGSKYGPDGLPYLKV 173
Query: 685 LKEGI-----KSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723
LK L + G Y C VSN G + L
Sbjct: 174 LKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWL 217
Score = 89.6 bits (222), Expect = 4e-20
Identities = 37/218 (16%), Positives = 63/218 (28%), Gaps = 27/218 (12%)
Query: 28 QKFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIG 83
ME + + V C G ++W K+ + G+
Sbjct: 20 NTEKMEKRLHAVPAANTVKFRCPA---GGNPMPTMRWLKNGKEFKQEHRIGGY------- 69
Query: 84 SDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDT- 142
+SL + V+ D Y C V G + L V+ I+Q
Sbjct: 70 KVRNQHWSLIMESVVPSDKGNYTCVVENE-YGS---INHTYHLDVVERSRHRPILQAGLP 125
Query: 143 --LYTTEDREIELECISANGKPPAEITWI-----DGTGTVMSNVRVTEEASVDGRRTTVK 195
T ++E C I WI +G+ + + G ++
Sbjct: 126 ANASTVVGGDVEFVC-KVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNA 184
Query: 196 STLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVK 233
L L E + C+ N + + A L +L K
Sbjct: 185 EVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPK 222
Score = 72.2 bits (177), Expect = 3e-14
Identities = 35/177 (19%), Positives = 47/177 (26%), Gaps = 40/177 (22%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT---------ELYLTNITRHQHDS- 366
V+ C A NP RW N + L + ++ D
Sbjct: 33 AANTVKFRCPAGGNPMP-TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVV--PSDKG 89
Query: 367 IVKCEVHNDVGKSEDSETLDVTYG-----PRFRARPYSVQVDRGAGVNLLCDVDGNPAPE 421
C V N+ G + LDV P + G V +C V + P
Sbjct: 90 NYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPH 149
Query: 422 ITWIHEDSDKVVGNSPNLTLLM---------------------TSDDLAGRYYCKAS 457
I WI P+ + T D AG Y CK S
Sbjct: 150 IQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEAD-AGEYICKVS 205
Score = 71.5 bits (175), Expect = 6e-14
Identities = 34/190 (17%), Positives = 56/190 (29%), Gaps = 32/190 (16%)
Query: 376 VGKSEDSETLDVTYGPRF----RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD- 430
+ + SE + P + + V V C GNP P + W+ +
Sbjct: 1 MAEDFVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEF 60
Query: 431 ---------KVVGNSPNLTL--LMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLK----- 473
KV +L + ++ SD G Y C G T +L
Sbjct: 61 KQEHRIGGYKVRNQHWSLIMESVVPSD--KGNYTCVVENEYGS----INHTYHLDVVERS 114
Query: 474 -GRPTIISH--RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDV 530
RP + + + G C +S P + W E+ G D + V
Sbjct: 115 RHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPH-IQWIKHVEKNGSKYGPDGLPYLKV 173
Query: 531 GKSEDSETLD 540
K + +
Sbjct: 174 LKHSGINSSN 183
Score = 70.7 bits (173), Expect = 1e-13
Identities = 30/114 (26%), Positives = 44/114 (38%), Gaps = 8/114 (7%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRVI-DKTGVLQWTKDDFALGPHRNLSGFDRYAMI---GSD 85
A P + + VVG V C+V D +QW K G G ++ G +
Sbjct: 121 QAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGIN 180
Query: 86 EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQ 139
L ++ V D Y C+VS I G+ ++ A LTVL P +
Sbjct: 181 SSNAEVLALFNVTEADAGEYICKVSNYI-GQ---ANQSAWLTVLPKQQAPGREK 230
Score = 60.7 bits (147), Expect = 3e-10
Identities = 24/175 (13%), Positives = 54/175 (30%), Gaps = 16/175 (9%)
Query: 134 PPRIVQGDTLYT-----TEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASV 187
P + + ++ C A G P + W+ +G R+
Sbjct: 15 APYWTNTEKMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNG-KEFKQEHRIGGYKVR 72
Query: 188 DGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVK--YAPKVQVSVIGS 245
+ +L++ +TC +N L ++ + + P +Q + +
Sbjct: 73 NQH-----WSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPAN 127
Query: 246 NRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSI 300
V G DV CK ++ +W + + + L + +H +
Sbjct: 128 ASTVVGGDVEFVCKVYSDA-QPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINS 181
Score = 60.3 bits (146), Expect = 4e-10
Identities = 36/174 (20%), Positives = 49/174 (28%), Gaps = 53/174 (30%)
Query: 489 GDTARVECSAFSIPPPEKVTWSYRGEEI---------------------GVGSSD--DYS 525
+T + C A P P + W G+E V SD +Y+
Sbjct: 34 ANTVKFRCPAGGNPMPT-MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYT 92
Query: 526 --VHNDVGKSEDSETLDVTYG-----PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW 578
V N+ G + LDV P + G V +C V + P I W
Sbjct: 93 CVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQW 152
Query: 579 IHEDSDKVVGNSPNLTLLM---------------------TSDDLAGRYYCKAS 611
I P+ + T D AG Y CK S
Sbjct: 153 IKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEAD-AGEYICKVS 205
Score = 50.3 bits (120), Expect = 7e-07
Identities = 29/201 (14%), Positives = 52/201 (25%), Gaps = 57/201 (28%)
Query: 250 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT---------ELYLTNITRHQHDS- 299
V+ C A NP RW N + L + ++ D
Sbjct: 33 AANTVKFRCPAGGNPMP-TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVV--PSDKG 89
Query: 300 -----------IVKCEVQVSVIGSNR--------------LVEGTDVRLYCKAEANPSHM 334
+ + V+ +R V G DV CK ++
Sbjct: 90 NYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDA-QP 148
Query: 335 KYRWYINDQPVPAAASATELYLTNITRHQHDSIVK------------------CEVHNDV 376
+W + + + L + +H + C+V N +
Sbjct: 149 HIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYI 208
Query: 377 GKSEDSETLDVTYGPRFRARP 397
G++ S L V + R
Sbjct: 209 GQANQSAWLTVLPKQQAPGRE 229
Score = 49.9 bits (119), Expect = 1e-06
Identities = 19/82 (23%), Positives = 28/82 (34%), Gaps = 6/82 (7%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
+T + C A P P + W G+E + + +LI+
Sbjct: 34 ANTVKFRCPAGGNPMPT-MRWLKNGKEFKQEHRIGGYKVRNQ-----HWSLIMESVVPSD 87
Query: 703 FGVYNCSVSNPYGSDSVEIMLK 724
G Y C V N YGS + L
Sbjct: 88 KGNYTCVVENEYGSINHTYHLD 109
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 88.8 bits (220), Expect = 5e-20
Identities = 42/218 (19%), Positives = 69/218 (31%), Gaps = 21/218 (9%)
Query: 23 AQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDR 78
QY+ + P D TL C+V G ++W KD + +
Sbjct: 5 GQYQSPRIIEHPTDLVVKKNEPATLNCKV---EGKPEPTIEWFKDGEPVSTNEK----KS 57
Query: 79 YAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIV 138
+ + D + + D Y C +G+ SR A+L + V
Sbjct: 58 HRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNR-VGQ--AVSRHASLQIAVL--RDDFR 112
Query: 139 QGDTLYT-TEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKS- 196
+ LEC G P + WI + ++ A R V
Sbjct: 113 VEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGA--SSRVRIVDGG 170
Query: 197 TLVLTPKKEHHNTTFTCQAQNTA-DRTYKVARLKLLVK 233
L+++ + + C AQN R A+L + VK
Sbjct: 171 NLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVK 208
Score = 81.4 bits (201), Expect = 2e-17
Identities = 39/195 (20%), Positives = 60/195 (30%), Gaps = 30/195 (15%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDL-- 602
PR P + V + L C V+G P P I W + + + L
Sbjct: 10 PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFF 69
Query: 603 -----------AGRYYCKASVMGFPEVGAEATVYLK-GRPTIISH-RTQFGIPGDTARVE 649
G Y+C A V A++ + R + G+TA +E
Sbjct: 70 YRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLE 129
Query: 650 CS-AFSIPPPEKVTWSYRGEEI------GVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
C IP P + W G + G+S +++ L+I
Sbjct: 130 CGPPKGIPEPT-LIWIKDGVPLDDLKAMSFGASSRVRIVDG-------GNLLISNVEPID 181
Query: 703 FGVYNCSVSNPYGSD 717
G Y C N G+
Sbjct: 182 EGNYKCIAQNLVGTR 196
Score = 73.0 bits (179), Expect = 2e-14
Identities = 46/264 (17%), Positives = 71/264 (26%), Gaps = 78/264 (29%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAG 450
PR P + V + L C V+G P P I W D + V N + D
Sbjct: 10 PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFK-DGEPVSTNEKKSHRVQFKDGA-- 66
Query: 451 RYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWS 510
L T+ + Q D C A
Sbjct: 67 ---------------------LFFYRTMQGKKEQ-----DGGEYWCVA------------ 88
Query: 511 YRGEEIGVGSSDDYSVHNDVGKSEDSE-TLDVTYG-PRFRARPYSVQVDRGAGVNLLCD- 567
N VG++ +L + FR P +V +G L C
Sbjct: 89 ----------------KNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGP 132
Query: 568 VDGNPAPEITW------IHEDSDKVVGNSPNLTLLMT----------SDDLAGRYYCKAS 611
G P P + W + + G S + ++ D G Y C A
Sbjct: 133 PKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPID--EGNYKCIAQ 190
Query: 612 VMGFPEVGAEATVYLKGRPTIISH 635
+ + A + ++ + H
Sbjct: 191 NLVGTRESSYAKLIVQVKAAAHHH 214
Score = 65.3 bits (159), Expect = 6e-12
Identities = 27/117 (23%), Positives = 40/117 (34%), Gaps = 16/117 (13%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGF--DRYAMI 82
F +EP+D G L C G+ L W KD L + +S R ++
Sbjct: 110 DFRVEPKDTRVAKGETALLECGPP--KGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIV 167
Query: 83 GSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQ 139
+L I V D+ Y+C ++G S +A L V V
Sbjct: 168 D-----GGNLLISNVEPIDEGNYKCIAQN-LVGT--RESSYAKLIVQVKAAAHHHHH 216
Score = 43.3 bits (102), Expect = 2e-04
Identities = 27/197 (13%), Positives = 47/197 (23%), Gaps = 49/197 (24%)
Query: 248 LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELY----------LTNITRHQH 297
+ + L CK E P W+ + +PV + T + +
Sbjct: 21 VKKNEPATLNCKVEGKPE-PTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQ 79
Query: 298 DS-------------IVKCEVQVSVIG----------SNRLVEGTDVRLYC-KAEANPSH 333
D V + + R+ +G L C + P
Sbjct: 80 DGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIP-E 138
Query: 334 MKYRWYINDQPVPAAASATELYLTNITRHQHDS--IVK----------CEVHNDVGKSED 381
W + P+ + + + + + I C N VG E
Sbjct: 139 PTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRES 198
Query: 382 SE-TLDVTYGPRFRARP 397
S L V
Sbjct: 199 SYAKLIVQVKAAAHHHH 215
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 86.7 bits (214), Expect = 2e-19
Identities = 37/217 (17%), Positives = 64/217 (29%), Gaps = 35/217 (16%)
Query: 34 PQDQTAVVGSRVTLPCRVI-----DKTGVLQWTKDDFALGPHRNLSGF------------ 76
Q G LPC+ ++W +
Sbjct: 7 EQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYP 66
Query: 77 ---DRYAMIGSD-EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP 132
R +D + GD S+ + + L D YQC+V P + ++ LTVLV P
Sbjct: 67 DLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKA----PGVANKKFLLTVLVKP 122
Query: 133 DPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRT 192
R + +L+C G P + W + + E +
Sbjct: 123 SGTRCFV--DGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMT------ 174
Query: 193 TVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLK 229
+ + ++ T++C QN + RL
Sbjct: 175 --SPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLD 209
Score = 65.5 bits (159), Expect = 5e-12
Identities = 32/213 (15%), Positives = 65/213 (30%), Gaps = 49/213 (23%)
Query: 551 PYSVQVDRGAGVNLLCDVDGNPAP----EITWIHEDSDKVVGNSP--------------- 591
++ +G L C +P +I W+ SD + +
Sbjct: 7 EQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYP 66
Query: 592 ----------------NLTLLMTS---DDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPT 631
+ ++ +T+ D G Y CK G TV +K T
Sbjct: 67 DLKGRVHFTSNDVKSGDASINVTNLQLSD-IGTYQCKVKKAPGVANKKFLLTVLVKPSGT 125
Query: 632 IISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKS 691
G+ +++C P + W + + + + +
Sbjct: 126 RCFVDGS-EEIGNDFKLKCEPKEGSLPLQFEW-QKLSDSQTMPTPWLAEMTS-------P 176
Query: 692 TLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
+ ++ + ++ G Y+C+V N GSD + L
Sbjct: 177 VISVKNASSEYSGTYSCTVQNRVGSDQCMLRLD 209
Score = 60.5 bits (146), Expect = 2e-10
Identities = 26/197 (13%), Positives = 53/197 (26%), Gaps = 47/197 (23%)
Query: 307 VSVIGSNRLV---EGTDVRLYCKAEANPS---HMKYRW----------------YINDQP 344
+S+ + + +G L CK +P + W Y D+
Sbjct: 1 LSITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKI 60
Query: 345 VPAAASATE----------------LYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVT 388
+ + +TN+ +C+V G + L V
Sbjct: 61 YDNYYPDLKGRVHFTSNDVKSGDASINVTNLQ-LSDIGTYQCKVKKAPGVANKKFLLTVL 119
Query: 389 YGPRFRARPYSVQVDRGAGVNLLCDV-DGNPAPEITWIHEDSDKVVGNSP-------NLT 440
P + G L C+ +G+ + W + + ++
Sbjct: 120 VKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVIS 179
Query: 441 LLMTSDDLAGRYYCKAS 457
+ S + +G Y C
Sbjct: 180 VKNASSEYSGTYSCTVQ 196
Score = 56.6 bits (136), Expect = 5e-09
Identities = 32/209 (15%), Positives = 65/209 (31%), Gaps = 41/209 (19%)
Query: 126 LTVLVPPDPPRIVQGDTLYTTEDREIELECI---SANGKPPAEITWI---------DGTG 173
L++ P +G+T L C S + P +I W+ D
Sbjct: 1 LSITTPEQRIEKAKGET--------AYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVI 52
Query: 174 TVMSNVRVTEEASVDGR-RTTV--------KSTLVLTPKKEHHNTTFTCQAQNTADRTYK 224
+ S ++ + D + R +++ +T + T+ C+ + K
Sbjct: 53 ILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANK 112
Query: 225 VARLKLLVK-YAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAAS 283
L +LVK + V G D +L C+ + +++ W
Sbjct: 113 KFLLTVLVKPSGTRCFVDG----SEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTP 168
Query: 284 AT------ELYLTNITRHQHDSIVKCEVQ 306
+ + N + ++ C VQ
Sbjct: 169 WLAEMTSPVISVKNASS-EYSGTYSCTVQ 196
Score = 56.6 bits (136), Expect = 5e-09
Identities = 32/227 (14%), Positives = 58/227 (25%), Gaps = 49/227 (21%)
Query: 397 PYSVQVDRGAGVNLLCDVDGNPAP----EITWIHEDSDKVVGNSPNLTLLMTSDDLAGRY 452
++ +G L C +P +I W+ SD + +L + D + Y
Sbjct: 7 EQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQ--IVDQVIILYSGDKIYDNY 64
Query: 453 YCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYR 512
Y V + G +I Q D +C
Sbjct: 65 YPDLK----GRVHFTSNDVKSGDASINVTNLQ---LSDIGTYQCK--------------- 102
Query: 513 GEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDV-DGN 571
V G + L V P + G L C+ +G+
Sbjct: 103 -------------VKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGS 149
Query: 572 PAPEITWIHEDSDKVVGNSP-------NLTLLMTSDDLAGRYYCKAS 611
+ W + + +++ S + +G Y C
Sbjct: 150 LPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQ 196
Score = 44.7 bits (105), Expect = 5e-05
Identities = 14/106 (13%), Positives = 27/106 (25%), Gaps = 17/106 (16%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVI--DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDE 86
D + +G+ L C +W K + + + +
Sbjct: 123 SGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLS------DSQTMPTPWLAEMTSP 176
Query: 87 EGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP 132
+ + + Y C V + + L V VPP
Sbjct: 177 ----VISVKNASSEYSGTYSCTVQNRVGSD----QCMLRLDV-VPP 213
Score = 41.6 bits (97), Expect = 5e-04
Identities = 26/147 (17%), Positives = 44/147 (29%), Gaps = 34/147 (23%)
Query: 643 GDTARVECSAFSIP---PPEKVTW---------------SYRGEEIGVGSSDDY----SV 680
G+TA + C P P + W Y G++I D
Sbjct: 15 GETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHF 74
Query: 681 LEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQK--SFPLLLI-LTG 737
+ +K G +++ + + G Y C V G + + +L S + +
Sbjct: 75 TSNDVKSG-DASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSE 133
Query: 738 VIGCVVILVALTMVVILCQRKVKKPPP 764
IG L C+ K P
Sbjct: 134 EIGNDFKLK--------CEPKEGSLPL 152
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 86.9 bits (215), Expect = 3e-19
Identities = 36/225 (16%), Positives = 57/225 (25%), Gaps = 30/225 (13%)
Query: 32 MEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGSDEE 87
M+ + + V C G + W K+ + G
Sbjct: 20 MDKKLLAVPAANTVRFRCPA---AGNPTPSISWLKNGREFRGEHRIGGI-------KLRH 69
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLV--PPDPPRIVQGDTLYT 145
+SL + V+ D Y C V G + TL VL P P T
Sbjct: 70 QQWSLVMESVVPSDRGNYTCVVENKF-GS---IRQTYTLDVLERSPHRPILQAGLPANQT 125
Query: 146 -TEDREIELECISANGKPPAEITW-----IDGTGTVMSNVRVTEEASVDGRRTTVK-STL 198
++E C I W ++G+ + L
Sbjct: 126 AVLGSDVEFHC-KVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRL 184
Query: 199 VLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVI 243
L E + C+A N K L V + ++
Sbjct: 185 RLANVSERDGGEYLCRATNFIGVAEKAFWLS--VHGPRAAEEELV 227
Score = 82.7 bits (204), Expect = 1e-17
Identities = 42/215 (19%), Positives = 57/215 (26%), Gaps = 28/215 (13%)
Query: 535 DSETLDVTYGPRF----RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH--------ED 582
D +T T P + R + V V C GNP P I+W+
Sbjct: 2 DPDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHR 61
Query: 583 SDKVVGNSPNLTLLMTS---DDLAGRYYCKAS-VMGFPEVGAEATVYLKGR---PTIISH 635
+ +L+M S D G Y C G V +
Sbjct: 62 IGGIKLRHQQWSLVMESVVPSD-RGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGL 120
Query: 636 -RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIK---- 690
Q + G C +S P + W E G D + LK I
Sbjct: 121 PANQTAVLGSDVEFHCKVYSDAQPH-IQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVE 179
Query: 691 --STLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723
L + G Y C +N G L
Sbjct: 180 ADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWL 214
Score = 77.7 bits (191), Expect = 5e-16
Identities = 36/217 (16%), Positives = 55/217 (25%), Gaps = 45/217 (20%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA---------SATELYLTNITRHQHDS- 366
VR C A NP+ W N + L + ++ D
Sbjct: 29 AANTVRFRCPAAGNPTP-SISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPS--DRG 85
Query: 367 IVKCEVHNDVGKSEDSETLDVTYG-----PRFRARPYSVQVDRGAGVNLLCDVDGNPAPE 421
C V N G + TLDV P + G+ V C V + P
Sbjct: 86 NYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPH 145
Query: 422 ITWIHEDSDKVVGNSPNLTLLMTSDDL---------------------AGRYYCKAS-VM 459
I W+ P+ T +T G Y C+A+ +
Sbjct: 146 IQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFI 205
Query: 460 GFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVEC 496
G + + G + + V
Sbjct: 206 G--VAEKAFWLSVHGPRAAEEELVE---ADEAGSVHH 237
Score = 69.6 bits (170), Expect = 3e-13
Identities = 40/228 (17%), Positives = 61/228 (26%), Gaps = 58/228 (25%)
Query: 475 RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEI------------------ 516
RP + + +T R C A P P ++W G E
Sbjct: 16 RPERMDKKLLAVPAANTVRFRCPAAGNPTPS-ISWLKNGREFRGEHRIGGIKLRHQQWSL 74
Query: 517 ---GVGSSD--DYS--VHNDVGKSEDSETLDVTYG-----PRFRARPYSVQVDRGAGVNL 564
V SD +Y+ V N G + TLDV P + G+ V
Sbjct: 75 VMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEF 134
Query: 565 LCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDL---------------------A 603
C V + P I W+ P+ T +T
Sbjct: 135 HCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDG 194
Query: 604 GRYYCKAS-VMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVEC 650
G Y C+A+ +G + + G + + V
Sbjct: 195 GEYLCRATNFIG--VAEKAFWLSVHGPRAAEEELVE---ADEAGSVHH 237
Score = 66.9 bits (163), Expect = 2e-12
Identities = 32/125 (25%), Positives = 46/125 (36%), Gaps = 9/125 (7%)
Query: 17 LSMGSLAQYREQKFAMEPQDQTAVVGSRVTLPCRVI-DKTGVLQWTKDDFALGPHRNLSG 75
L + + +R A P +QTAV+GS V C+V D +QW K G G
Sbjct: 104 LDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDG 163
Query: 76 FDRYAMIGS----DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVP 131
++ S E D L + V D Y C+ + I G + L+V P
Sbjct: 164 TPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFI-GV---AEKAFWLSVHGP 219
Query: 132 PDPPR 136
Sbjct: 220 RAAEE 224
Score = 66.1 bits (161), Expect = 4e-12
Identities = 37/182 (20%), Positives = 54/182 (29%), Gaps = 22/182 (12%)
Query: 381 DSETLDVTYGPRF----RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH--------ED 428
D +T T P + R + V V C GNP P I+W+
Sbjct: 2 DPDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHR 61
Query: 429 SDKVVGNSPNLTLLMTS---DDLAGRYYCKAS-VMGFPEVGAEATVYLKGR---PTIISH 481
+ +L+M S D G Y C G V +
Sbjct: 62 IGGIKLRHQQWSLVMESVVPSD-RGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGL 120
Query: 482 -RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLD 540
Q + G C +S P + W E G D + + V KS SE+++
Sbjct: 121 PANQTAVLGSDVEFHCKVYSDAQPH-IQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVE 179
Query: 541 VT 542
Sbjct: 180 AD 181
Score = 60.3 bits (146), Expect = 4e-10
Identities = 28/175 (16%), Positives = 58/175 (33%), Gaps = 18/175 (10%)
Query: 130 VPPDPPRIVQGD-----TLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTE 183
V P + + L + C A G P I+W+ +G
Sbjct: 7 VDTGAPYWTRPERMDKKLLAVPAANTVRFRC-PAAGNPTPSISWLKNGR-------EFRG 58
Query: 184 EASVDGRRTTVK-STLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVK--YAPKVQV 240
E + G + + +LV+ +TC +N + L +L + + P +Q
Sbjct: 59 EHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQA 118
Query: 241 SVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRH 295
+ + V G+DV +CK ++ +W + + + + +
Sbjct: 119 GLPANQTAVLGSDVEFHCKVYSDA-QPHIQWLKHVEVNGSKVGPDGTPYVTVLKS 172
Score = 52.6 bits (126), Expect = 2e-07
Identities = 21/96 (21%), Positives = 31/96 (32%), Gaps = 6/96 (6%)
Query: 629 RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688
RP + + +T R C A P P ++W G E L
Sbjct: 16 RPERMDKKLLAVPAANTVRFRCPAAGNPTPS-ISWLKNGREFRGEHRIGGIKLRHQ---- 70
Query: 689 IKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
+ +L++ G Y C V N +GS L
Sbjct: 71 -QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLD 105
Score = 50.3 bits (120), Expect = 9e-07
Identities = 28/214 (13%), Positives = 54/214 (25%), Gaps = 60/214 (28%)
Query: 250 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA---------SATELYLTNITRHQHDS- 299
VR C A NP+ W N + L + ++ D
Sbjct: 29 AANTVRFRCPAAGNPTP-SISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPS--DRG 85
Query: 300 -----------IVKCEVQVSVIGSNR--------------LVEGTDVRLYCKAEANPSHM 334
++ + V+ + V G+DV +CK ++
Sbjct: 86 NYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDA-QP 144
Query: 335 KYRWYINDQPVPAAASATELYLTNITRHQHDSIVK-------------------CEVHND 375
+W + + + + + V+ C N
Sbjct: 145 HIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNF 204
Query: 376 VGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVN 409
+G +E + L V V+ D V+
Sbjct: 205 IGVAEKAFWLSVHGPRAA--EEELVEADEAGSVH 236
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 84.9 bits (210), Expect = 4e-19
Identities = 23/172 (13%), Positives = 45/172 (26%), Gaps = 23/172 (13%)
Query: 235 APKVQVSVIGSNRLV-EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNIT 293
PK + + V + V L C+ +P +W+ N +P Y
Sbjct: 2 PPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPT--HTQPSYRFKAN 59
Query: 294 RHQHDSIVKCEVQ-----------------VSVIGSNRLVEGTDVRLYCKAEANPSHMKY 336
C+ V EG + L C + + +K
Sbjct: 60 N-NDSGEYTCQTGQTSLSDPVHLTVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKV 118
Query: 337 RWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVT 388
++ N + + + H C + S+ + +T
Sbjct: 119 TFFQNGKSQKFSHLDPTFSIPQANHS-HSGDYHCTGNIGYT-LFSSKPVTIT 168
Score = 79.9 bits (197), Expect = 2e-17
Identities = 34/181 (18%), Positives = 61/181 (33%), Gaps = 22/181 (12%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPE-ITWIHEDSDKVVGNSPNLTLLMTSDDLA 603
+ P + V + V L C +P + I W H + P+ ++D +
Sbjct: 5 AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNND-S 63
Query: 604 GRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTW 663
G Y C+ + + + ++ G+T + C ++ P KVT+
Sbjct: 64 GEYTCQTGQ---TSLSDPVHLTVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTF 120
Query: 664 SYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYG---SDSVE 720
G+ D T I ++ H H G Y+C+ + Y S V
Sbjct: 121 FQNGKSQKFSHLD--------------PTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVT 166
Query: 721 I 721
I
Sbjct: 167 I 167
Score = 64.5 bits (157), Expect = 5e-12
Identities = 23/183 (12%), Positives = 51/183 (27%), Gaps = 31/183 (16%)
Query: 127 TVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEAS 186
+ + P ++Q D++ L C A I W + ++ + +
Sbjct: 6 VLKLEPPWINVLQEDSV--------TLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFK 57
Query: 187 VDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSN 246
+ + + +TCQ T + L V + V +
Sbjct: 58 AN----------------NNDSGEYTCQTGQ----TSLSDPVHLTVLFEWLVLQT--PHL 95
Query: 247 RLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQ 306
EG + L C + + +K ++ N + + + H C
Sbjct: 96 EFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLDPTFSIPQANHS-HSGDYHCTGN 154
Query: 307 VSV 309
+
Sbjct: 155 IGY 157
Score = 63.3 bits (154), Expect = 1e-11
Identities = 23/133 (17%), Positives = 45/133 (33%), Gaps = 5/133 (3%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPE-ITWIHEDSDKVVGNSPNLTLLMTSDDLA 449
+ P + V + V L C +P + I W H + P+ ++D +
Sbjct: 5 AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNND-S 63
Query: 450 GRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTW 509
G Y C+ + + + ++ G+T + C ++ P KVT+
Sbjct: 64 GEYTCQTGQ---TSLSDPVHLTVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTF 120
Query: 510 SYRGEEIGVGSSD 522
G+ D
Sbjct: 121 FQNGKSQKFSHLD 133
Score = 62.9 bits (153), Expect = 2e-11
Identities = 34/191 (17%), Positives = 54/191 (28%), Gaps = 45/191 (23%)
Query: 32 MEPQDQTAVVGSRVTLPCRVIDKTGV--LQWTKDDFALGPHRNLSGFDRYAMIGSDEEGD 89
+EP + VTL C+ +QW + + H
Sbjct: 9 LEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQ----------------- 51
Query: 90 YSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDR 149
+ +D Y CQ L +P LTVL ++Q L E
Sbjct: 52 -PSYRFKANNNDSGEYTCQTGQTSLSDPV------HLTVLFEW---LVLQTPHLEFQEGE 101
Query: 150 EIELECISANGKPPAEITW-IDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHN 208
I L C S KP ++T+ +G S++ T + H+
Sbjct: 102 TIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLD---------------PTFSIPQANHSHS 146
Query: 209 TTFTCQAQNTA 219
+ C
Sbjct: 147 GDYHCTGNIGY 157
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 86.0 bits (213), Expect = 4e-19
Identities = 39/196 (19%), Positives = 64/196 (32%), Gaps = 29/196 (14%)
Query: 541 VTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLT---LLM 597
+ PR P + V +G L C +G P P I W ++V + + +L+
Sbjct: 6 EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYK-GGERVETDKDDPRSHRMLL 64
Query: 598 TSDDL--------------AGRYYCKASVMGFPEVGAEATVYLKG-RPTIISH-RTQFGI 641
S L G Y C A V +A++ + R +
Sbjct: 65 PSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVA 124
Query: 642 PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHD 701
G+ A +EC P ++W G + D+ + L+I +R
Sbjct: 125 VGEPAVMECQPPRGHPEPTISWKKDGSPL--DDKDERITIRG-------GKLMITYTRKS 175
Query: 702 HFGVYNCSVSNPYGSD 717
G Y C +N G
Sbjct: 176 DAGKYVCVGTNMVGER 191
Score = 84.9 bits (210), Expect = 1e-18
Identities = 40/214 (18%), Positives = 65/214 (30%), Gaps = 30/214 (14%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
+ P D G TL C+ G ++W K + ++ R +
Sbjct: 11 RIVEHPSDLIVSKGEPATLNCKA---EGRPTPTIEWYKGGERVETDKDDPRSHRMLL--- 64
Query: 85 DEEGD---YSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQG- 140
G + D+ Y C V+ LGE S A+L V + Q
Sbjct: 65 -PSGSLFFLRIVHGRKSRPDEGVYVC-VARNYLGE--AVSHDASLEVAIL--RDDFRQNP 118
Query: 141 DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVL 200
+ +EC G P I+W + D R T L++
Sbjct: 119 SDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDK---------DERITIRGGKLMI 169
Query: 201 TPKKEHHNTTFTCQAQNTADRTY-KVARLKLLVK 233
T ++ + C N +VA L +L +
Sbjct: 170 TYTRKSDAGKYVCVGTNMVGERESEVAELTVLER 203
Score = 69.1 bits (169), Expect = 3e-13
Identities = 41/206 (19%), Positives = 62/206 (30%), Gaps = 42/206 (20%)
Query: 387 VTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLT---LLM 443
+ PR P + V +G L C +G P P I W ++V + + +L+
Sbjct: 6 EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYK-GGERVETDKDDPRSHRMLL 64
Query: 444 TSDDL--------------AGRYYCKASVMGFPEVGAEATVYLKG-RPTIISH-RTQFGI 487
S L G Y C A V +A++ + R +
Sbjct: 65 PSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVA 124
Query: 488 PGDTARVECSAFSIPPPEKVTWSYRGEEI-----------------GVGSSD--DYS--V 526
G+ A +EC P ++W G + SD Y
Sbjct: 125 VGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVG 184
Query: 527 HNDVGKSEDSE-TLDVTYGPRFRARP 551
N VG+ E L V P F
Sbjct: 185 TNMVGERESEVAELTVLERPSFVKAA 210
Score = 63.3 bits (154), Expect = 2e-11
Identities = 29/114 (25%), Positives = 36/114 (31%), Gaps = 19/114 (16%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVI--DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDE 86
F P D VG + C+ + W KD L D I
Sbjct: 113 DFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDK------DERITIRGG- 165
Query: 87 EGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQG 140
L I D +Y C V T ++GE S A LTVL P V+
Sbjct: 166 ----KLMITYTRKSDAGKYVC-VGTNMVGE--RESEVAELTVLE---RPSFVKA 209
Score = 47.9 bits (114), Expect = 4e-06
Identities = 32/194 (16%), Positives = 52/194 (26%), Gaps = 48/194 (24%)
Query: 248 LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATE----------LYLTNIT---R 294
+ +G L CKAE P+ WY + V L+ I +
Sbjct: 21 VSKGEPATLNCKAEGRPT-PTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRK 79
Query: 295 HQHDS-------------IVKCEVQVSVIG----------SNRLVEGTDVRLYCKA-EAN 330
+ D V + + V + G + C+ +
Sbjct: 80 SRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGH 139
Query: 331 PSHMKYRWYINDQPVPAAA-----SATELYLTNITRHQHDS-IVKCEVHNDVGKSEDSE- 383
P W + P+ +L +T + D+ C N VG+ E
Sbjct: 140 P-EPTISWKKDGSPLDDKDERITIRGGKLMITYTRK--SDAGKYVCVGTNMVGERESEVA 196
Query: 384 TLDVTYGPRFRARP 397
L V P F
Sbjct: 197 ELTVLERPSFVKAA 210
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 85.8 bits (212), Expect = 5e-19
Identities = 32/210 (15%), Positives = 63/210 (30%), Gaps = 40/210 (19%)
Query: 545 PRFRARPYSVQVDRGAGVNLL-CDVDGNPAPEITWIH-----EDSDK----VVGNSPNLT 594
F +V++ V + ++ +I + K + N+ +
Sbjct: 3 DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE 62
Query: 595 LLM---TSDDLAGRYYCKAS-------------VMGFPEVGAEAT-----VYLKGRPTII 633
+ M +D G Y + F ++ EA K P +
Sbjct: 63 MFMEKLQDED-EGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFV 121
Query: 634 SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTL 693
+ + ++C +I + W EI S D+ +D + TL
Sbjct: 122 EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREI---SVDEKHDFKDGI-----CTL 173
Query: 694 IIRESRHDHFGVYNCSVSNPYGSDSVEIML 723
+I E G+Y + + G D + L
Sbjct: 174 LITEFSKKDAGIYEVILKDDRGKDKSRLKL 203
Score = 78.8 bits (194), Expect = 1e-16
Identities = 27/218 (12%), Positives = 68/218 (31%), Gaps = 30/218 (13%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRVIDKTGVLQ--WTKDDFALGPHRNLSGFDRYAMIGSDEE 87
F + +V + +G + + ++ + + +Y M
Sbjct: 5 FTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNE------KEIFEGPKYKMHIDRNT 58
Query: 88 GDYSLEIYPVMLDDDARYQCQVS------------TGILGEPAIRSRFATLTVLVPPDPP 135
G + + + +D+ Y Q+ G + + + + P
Sbjct: 59 GIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGP 118
Query: 136 RIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVK 195
V+ + T + + L+C AN K I W + + + + +
Sbjct: 119 HFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGI-------- 170
Query: 196 STLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVK 233
TL++T + + ++ + +RLKL+ +
Sbjct: 171 CTLLITEFSKKDAGIYEVILKDDRGKD--KSRLKLVDE 206
Score = 63.0 bits (153), Expect = 3e-11
Identities = 20/173 (11%), Positives = 47/173 (27%), Gaps = 34/173 (19%)
Query: 391 PRFRARPYSVQVDRGAGVNLL-CDVDGNPAPEITWIH-----EDSDK----VVGNSPNLT 440
F +V++ V + ++ +I + K + N+ +
Sbjct: 3 DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE 62
Query: 441 LLM---TSDDLAGRYYCKAS-------------VMGFPEVGAEAT-----VYLKGRPTII 479
+ M +D G Y + F ++ EA K P +
Sbjct: 63 MFMEKLQDED-EGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFV 121
Query: 480 SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGK 532
+ + ++C +I + W EI + + + +
Sbjct: 122 EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREI--SVDEKHDFKDGICT 172
Score = 58.8 bits (142), Expect = 8e-10
Identities = 29/183 (15%), Positives = 52/183 (28%), Gaps = 43/183 (23%)
Query: 314 RLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA----------SATELYLTNITRHQ 363
++E VR + +AE + K + N++ + E+++ +
Sbjct: 13 EILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQD-- 70
Query: 364 HDS-IVKCEVHNDVGKSEDSETLDVTY-------------------GPRFRARPYSVQVD 403
D ++ + + + L GP F S +V
Sbjct: 71 EDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF-VEYLSWEVT 129
Query: 404 RGAGVNLLCDVDGNPAP-EITWIHED-----SDKVVGNSPNLTLL---MTSDDLAGRYYC 454
V L C V I W ++ +K TLL + D AG Y
Sbjct: 130 GECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKD-AGIYEV 188
Query: 455 KAS 457
Sbjct: 189 ILK 191
Score = 53.8 bits (129), Expect = 4e-08
Identities = 20/149 (13%), Positives = 45/149 (30%), Gaps = 19/149 (12%)
Query: 146 TEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKE 205
E ++ + A++ +I + + + +D + + + ++
Sbjct: 15 LEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKY--KMHIDRNTGII--EMFMEKLQD 70
Query: 206 HHNTTFTCQAQN-----TADRTYKVARLKLLVKYAPKVQVSVIG----------SNRLVE 250
T+T Q Q+ + K L K A + I S +
Sbjct: 71 EDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTG 130
Query: 251 GTDVRLYCKAEANPSHMKYRWYINDQPVP 279
+V L CK WY +++ +
Sbjct: 131 ECNVLLKCKVANIKKETHIVWYKDEREIS 159
Score = 45.3 bits (107), Expect = 3e-05
Identities = 24/195 (12%), Positives = 54/195 (27%), Gaps = 56/195 (28%)
Query: 247 RLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA----------SATELYLTNITR-- 294
++E VR + +AE + K + N++ + E+++ +
Sbjct: 13 EILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDED 72
Query: 295 -----------------------------------HQHDSIVKCEVQVSVIGSNRLVEGT 319
+ + I K S +
Sbjct: 73 EGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGEC 132
Query: 320 DVRLYCKAEANPSHMKYRWYINDQPVPA------AASATELYLTNITRHQHDSIVKCEVH 373
+V L CK WY +++ + L +T ++ + I + +
Sbjct: 133 NVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSK-KDAGIYEVILK 191
Query: 374 NDVGKSEDSETLDVT 388
+D G +D L +
Sbjct: 192 DDRG--KDKSRLKLV 204
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 84.6 bits (209), Expect = 9e-19
Identities = 31/206 (15%), Positives = 57/206 (27%), Gaps = 36/206 (17%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVD-GNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDL- 602
F P ++ RG L C + PE+ W+ + + +S + + D+
Sbjct: 3 SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62
Query: 603 -----------------AGRYYCKASVMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGD 644
G+Y C + V V L+G P + +
Sbjct: 63 DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANT 122
Query: 645 TARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFG 704
+ C A P P + W + + +
Sbjct: 123 PFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHG-------------PQRSLHVPGLNKTS 169
Query: 705 VYNCSVSNPYG---SDSVEIMLKPQK 727
++C N G S + I + PQ+
Sbjct: 170 SFSCEAHNAKGVTTSRTATITVLPQQ 195
Score = 81.1 bits (200), Expect = 1e-17
Identities = 37/205 (18%), Positives = 63/205 (30%), Gaps = 27/205 (13%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRVIDKTGV---LQWTKDDFALGPHRNLSGFDRYAMIGSDE 86
F P + T G TL C++ G + W +D L + D+
Sbjct: 5 FVGNPGNITGARGLTGTLRCQL-QVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDD 63
Query: 87 -EGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQG-DTLY 144
L I + L D +YQC V G S+ + + P ++ +
Sbjct: 64 WIVVSQLRITSLQLSDTGQYQCLVFLG-HQT--FVSQPGYVGLEG---LPYFLEEPEDRT 117
Query: 145 TTEDREIELECISANGKP-PAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPK 203
+ L C A G P P ++ W+ ++A L
Sbjct: 118 VAANTPFNLSC-QAQGPPEPVDLLWL-------------QDAVPLATAPGHGPQRSLHVP 163
Query: 204 KEHHNTTFTCQAQNTADRTYKVARL 228
+ ++F+C+A N T
Sbjct: 164 GLNKTSSFSCEAHNAKGVTTSRTAT 188
Score = 73.4 bits (180), Expect = 6e-15
Identities = 32/193 (16%), Positives = 55/193 (28%), Gaps = 38/193 (19%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVD-GNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDL- 448
F P ++ RG L C + PE+ W+ + + +S + + D+
Sbjct: 3 SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62
Query: 449 -----------------AGRYYCKASVMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGD 490
G+Y C + V V L+G P + +
Sbjct: 63 DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANT 122
Query: 491 TARVECSAFSIPPPEKVTWSYRGEEIGVGSSDD---------------YS--VHNDVGKS 533
+ C A P P + W + +S HN G +
Sbjct: 123 PFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSLHVPGLNKTSSFSCEAHNAKGVT 182
Query: 534 EDSETLDVTYGPR 546
S T +T P+
Sbjct: 183 T-SRTATITVLPQ 194
Score = 73.0 bits (179), Expect = 9e-15
Identities = 26/162 (16%), Positives = 44/162 (27%), Gaps = 20/162 (12%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVK------ 369
G L C+ + + W + Q + A S +V
Sbjct: 15 ARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITS 74
Query: 370 ----------CEVHNDVGKSE-DSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNP 418
C V + + P F P V NL C G P
Sbjct: 75 LQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPP 134
Query: 419 AP-EITWIHEDS--DKVVGNSPNLTLLMTSDDLAGRYYCKAS 457
P ++ W+ + G+ P +L + + + C+A
Sbjct: 135 EPVDLLWLQDAVPLATAPGHGPQRSLHVPGLNKTSSFSCEAH 176
Score = 66.5 bits (162), Expect = 1e-12
Identities = 26/175 (14%), Positives = 45/175 (25%), Gaps = 38/175 (21%)
Query: 475 RPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYS-------- 525
+ + G G T + C P +V W G+ + + S
Sbjct: 2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQ 61
Query: 526 -------------------------VHNDVGKSE-DSETLDVTYGPRFRARPYSVQVDRG 559
V + + P F P V
Sbjct: 62 DDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAAN 121
Query: 560 AGVNLLCDVDGNPAP-EITWIHEDS--DKVVGNSPNLTLLMTSDDLAGRYYCKAS 611
NL C G P P ++ W+ + G+ P +L + + + C+A
Sbjct: 122 TPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSLHVPGLNKTSSFSCEAH 176
Score = 65.7 bits (160), Expect = 3e-12
Identities = 21/149 (14%), Positives = 44/149 (29%), Gaps = 5/149 (3%)
Query: 134 PPRIVQGDTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRRT 192
P + + L C P E+ W+ DG +++ T+ + +
Sbjct: 3 SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62
Query: 193 TVK--STLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVE 250
S L +T + + C + ++ P + +
Sbjct: 63 DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVS-QPGYVGLEGLPYF-LEEPEDRTVAA 120
Query: 251 GTDVRLYCKAEANPSHMKYRWYINDQPVP 279
T L C+A+ P + W + P+
Sbjct: 121 NTPFNLSCQAQGPPEPVDLLWLQDAVPLA 149
Score = 55.7 bits (134), Expect = 9e-09
Identities = 31/181 (17%), Positives = 54/181 (29%), Gaps = 38/181 (20%)
Query: 249 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASA-----------------TELYLTN 291
G L C+ + + W + Q + A S ++L +T+
Sbjct: 15 ARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITS 74
Query: 292 ITRH-----------QHDSIVKCEVQVSVIG---------SNRLVEGTDVRLYCKAEANP 331
+ H + V V + G + T L C+A+ P
Sbjct: 75 LQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPP 134
Query: 332 SHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGP 391
+ W + P+ A ++ S CE HN G + S T +T P
Sbjct: 135 EPVDLLWLQDAVPLATAPGHGPQRSLHVPGLNKTSSFSCEAHNAKGVTT-SRTATITVLP 193
Query: 392 R 392
+
Sbjct: 194 Q 194
Score = 49.9 bits (119), Expect = 7e-07
Identities = 25/113 (22%), Positives = 37/113 (32%), Gaps = 30/113 (26%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV-----LQWTKDDFALGPHRNLSGFDRYAMIG 83
F EP+D+T + L C+ G L W +D L
Sbjct: 108 YFLEEPEDRTVAANTPFNLSCQA---QGPPEPVDLLWLQDAVPLATAP------------ 152
Query: 84 SDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPR 136
SL + L+ + + C+ G SR AT+TVL P +
Sbjct: 153 -GHGPQRSLHV--PGLNKTSSFSCEAHN-AKGV--TTSRTATITVL----PQQ 195
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 84.4 bits (208), Expect = 1e-18
Identities = 39/219 (17%), Positives = 69/219 (31%), Gaps = 28/219 (12%)
Query: 29 KFAMEPQDQTAV-VGSRVTLPCRVIDK-TGVLQWTKDDFALGPHRNLSGFDRYAMIGSDE 86
K P+ + +G V+L C + W L+G +E
Sbjct: 2 KIETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQI-----DSPLNGKVT------NE 50
Query: 87 EGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTT 146
+L + PV ++ Y C + + + + P P I L
Sbjct: 51 GTTSTLTMNPVSFGNEHSYLCTATCE----SRKLEKGIQVEIYSFPKDPEIHLSGPL--E 104
Query: 147 EDREIELECISANGKPPA--EITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKK 204
+ I ++C A+ P EI + G + S + + + + TP
Sbjct: 105 AGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKS--LEVTFTPVI 162
Query: 205 EHHNTTFTCQAQNTADR-----TYKVARLKLLVKYAPKV 238
E C+A+ D T + A +L V +PK
Sbjct: 163 EDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPKN 201
Score = 73.7 bits (180), Expect = 7e-15
Identities = 28/172 (16%), Positives = 51/172 (29%), Gaps = 10/172 (5%)
Query: 553 SVQVDRGAGVNLLCDVDGNPAPEITWIHED------SDKVVGNSPNLTLLMTSDDLAGRY 606
G V+L C G +P +W + G + LT+ S Y
Sbjct: 10 RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSY 69
Query: 607 YCKASVMGFPEVGAEATVYLKGRPTIIS-HRTQFGIPGDTARVECSAFSIPPPEKVTWS- 664
C A+ ++ V + P H + G V+CS + P +++
Sbjct: 70 LCTATCES-RKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDL 128
Query: 665 YRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGS 716
+G+ + + S + + E + D V C
Sbjct: 129 LKGDHL-MKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE 179
Score = 63.3 bits (153), Expect = 3e-11
Identities = 24/202 (11%), Positives = 59/202 (29%), Gaps = 35/202 (17%)
Query: 126 LTVLVPPDPPRIVQ-GDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEE 184
+ P+ + Q GD+ + L C S G +W + ++ E
Sbjct: 1 FKIETTPESRYLAQIGDS--------VSLTC-STTGCESPFFSWRTQIDSPLNGKVTNE- 50
Query: 185 ASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIG 244
STL + P + ++ C A + + K ++++ Y+ +
Sbjct: 51 --------GTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEI---YSFPKDPEIHL 99
Query: 245 SNRLVEGTDVRLYCKAEANP--SHMKYRWYINDQPVP-----------AAASATELYLTN 291
S L G + + C ++ D + + + +
Sbjct: 100 SGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFT 159
Query: 292 ITRHQHDSIVKCEVQVSVIGSN 313
++ C ++ + +
Sbjct: 160 PVIEDIGKVLVCRAKLHIDEMD 181
Score = 60.2 bits (145), Expect = 3e-10
Identities = 28/194 (14%), Positives = 59/194 (30%), Gaps = 27/194 (13%)
Query: 304 EVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQ-----PVPAAASATELYLTN 358
+++ + G V L C + W V + + L +
Sbjct: 2 KIETTPESRYLAQIGDSVSLTCSTTGCE-SPFFSWRTQIDSPLNGKVTNEGTTSTLTMNP 60
Query: 359 ITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGN- 417
++ ++ C + K E +++ P+ S ++ G + + C V
Sbjct: 61 VSF-GNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVY 119
Query: 418 --PAPEITW-----------IHEDSDKVVGNSPNLTLLMT--SDDLAGRYYCKASV---- 458
EI ED+D+ + +L + T +D+ C+A +
Sbjct: 120 PFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE 179
Query: 459 MGFPEVGAEATVYL 472
M +A L
Sbjct: 180 MDSVPTVRQAVKEL 193
Score = 58.2 bits (140), Expect = 1e-09
Identities = 29/156 (18%), Positives = 56/156 (35%), Gaps = 12/156 (7%)
Query: 399 SVQVDRGAGVNLLCDVDGNPAPEITWIHED------SDKVVGNSPNLTLLMTSDDLAGRY 452
G V+L C G +P +W + G + LT+ S Y
Sbjct: 10 RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSY 69
Query: 453 YCKASVMGFPEVGAEATVYLKGRPTIIS-HRTQFGIPGDTARVECSAFSIPPPEKVTWS- 510
C A+ ++ V + P H + G V+CS + P +++
Sbjct: 70 LCTATCES-RKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDL 128
Query: 511 YRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPR 546
+G+ + + + KS ++++L+VT+ P
Sbjct: 129 LKGDHL---MKSQEFLEDADRKSLETKSLEVTFTPV 161
Score = 52.9 bits (126), Expect = 7e-08
Identities = 23/112 (20%), Positives = 32/112 (28%), Gaps = 11/112 (9%)
Query: 28 QKFAMEPQDQTAVVGSRVTLPCRVID----KTGVLQWTKDDFALGPHRNLSGFDRYAMIG 83
K G +T+ C V D + K D + L DR
Sbjct: 92 PKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADR----K 147
Query: 84 SDEEGDYSLEIYPVMLDDDARYQCQVSTGILG---EPAIRSRFATLTVLVPP 132
S E + PV+ D C+ I P +R L V + P
Sbjct: 148 SLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISP 199
Score = 52.9 bits (126), Expect = 9e-08
Identities = 28/180 (15%), Positives = 55/180 (30%), Gaps = 42/180 (23%)
Query: 488 PGDTARVECSAFSIPPPEKVTW------SYRGEEIGVGSSDDYSV--------------- 526
GD+ + CS P +W G+ G++ ++
Sbjct: 15 IGDSVSLTCSTTGCESPF-FSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTA 73
Query: 527 HNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGN---PAPEITW----- 578
+ K E +++ P+ S ++ G + + C V EI
Sbjct: 74 TCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDH 133
Query: 579 ------IHEDSDKVVGNSPNLTLLMT--SDDLAGRYYCKASV----MGFPEVGAEATVYL 626
ED+D+ + +L + T +D+ C+A + M +A L
Sbjct: 134 LMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKEL 193
Score = 45.9 bits (108), Expect = 2e-05
Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 10/82 (12%)
Query: 642 PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHD 701
GD+ + CS P +W + D + EG STL +
Sbjct: 15 IGDSVSLTCSTTGCESPF-FSWR---------TQIDSPLNGKVTNEGTTSTLTMNPVSFG 64
Query: 702 HFGVYNCSVSNPYGSDSVEIML 723
+ Y C+ + I +
Sbjct: 65 NEHSYLCTATCESRKLEKGIQV 86
Score = 44.4 bits (104), Expect = 5e-05
Identities = 20/202 (9%), Positives = 48/202 (23%), Gaps = 47/202 (23%)
Query: 237 KVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQ-----PVPAAASATELYLTN 291
K++ + G V L C + W V + + L +
Sbjct: 2 KIETTPESRYLAQIGDSVSLTCSTTGCE-SPFFSWRTQIDSPLNGKVTNEGTTSTLTMNP 60
Query: 292 ITRHQHDSIVKC-----------EVQVSVIG---------SNRLVEGTDVRLYCKAEANP 331
++ ++ C +QV + S L G + + C
Sbjct: 61 VSF-GNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVY 119
Query: 332 --SHMKYRWYINDQPVP-----------AAASATELYLTNITRHQHDSIVKCEVHNDVGK 378
++ D + + + + ++ C + +
Sbjct: 120 PFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE 179
Query: 379 -------SEDSETLDVTYGPRF 393
+ + L V P+
Sbjct: 180 MDSVPTVRQAVKELQVYISPKN 201
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 83.4 bits (206), Expect = 2e-18
Identities = 28/179 (15%), Positives = 53/179 (29%), Gaps = 23/179 (12%)
Query: 235 APKVQVSVIGSNRLV-EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNIT 293
K +VS+ + +G +V L C +W+ N + + L + N
Sbjct: 2 PQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE--TNSSLNIVNAK 59
Query: 294 RHQHDSIVKCEVQVS-----------------VIGSNRLVEGTDVRLYCKAEANPSHMKY 336
+ KC+ Q + ++EG + L C N K
Sbjct: 60 F-EDSGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKV 118
Query: 337 RWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVG-KSEDSETLDVTYGPRFR 394
+Y + + + + +TN T C + + V PR +
Sbjct: 119 IYYKDGEALKYWYENHNISITNATVE-DSGTYYCTGKVWQLDYESEPLNITVIKAPREK 176
Score = 81.5 bits (201), Expect = 7e-18
Identities = 26/185 (14%), Positives = 58/185 (31%), Gaps = 22/185 (11%)
Query: 541 VTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPE-ITWIHEDSDKVVGNSPNLTLLMTS 599
V P+ P ++ +G V L C+ + W H + + +L ++
Sbjct: 1 VPQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFH-NGSLSEETNSSLNIVNAK 59
Query: 600 DDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPE 659
+ +G Y C+ + E + + ++ + + G + C +
Sbjct: 60 FEDSGEYKCQHQQVNESE---PVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVY 116
Query: 660 KVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYG---S 716
KV + GE + + + I + + G Y C+ S
Sbjct: 117 KVIYYKDGEALKYWYEN--------------HNISITNATVEDSGTYYCTGKVWQLDYES 162
Query: 717 DSVEI 721
+ + I
Sbjct: 163 EPLNI 167
Score = 69.9 bits (171), Expect = 6e-14
Identities = 24/180 (13%), Positives = 54/180 (30%), Gaps = 22/180 (12%)
Query: 387 VTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPE-ITWIHEDSDKVVGNSPNLTLLMTS 445
V P+ P ++ +G V L C+ + W H + + +L ++
Sbjct: 1 VPQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFH-NGSLSEETNSSLNIVNAK 59
Query: 446 DDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPE 505
+ +G Y C+ + E + + ++ + + G + C +
Sbjct: 60 FEDSGEYKCQHQQVNESE---PVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVY 116
Query: 506 KVTWSYRGEEIGVGSSD--------------DY--SVHNDVG-KSEDSETLDVTYGPRFR 548
KV + GE + + Y + + + V PR +
Sbjct: 117 KVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPREK 176
Score = 64.5 bits (157), Expect = 5e-12
Identities = 35/210 (16%), Positives = 59/210 (28%), Gaps = 46/210 (21%)
Query: 33 EPQDQTAVVGSRVTLPCRVIDKTGV--LQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDY 90
P G VTL C + V +W + EE +
Sbjct: 10 NPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLS------------------EETNS 51
Query: 91 SLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDRE 150
SL I +D Y+CQ EP F+ +L +++G L+
Sbjct: 52 SLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEV-VMEGQPLF------ 104
Query: 151 IELECISANGKPPAEITW-IDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNT 209
L C ++ + DG + +T +
Sbjct: 105 --LRCHGWRNWDVYKVIYYKDGEALKYWYEN---------------HNISITNATVEDSG 147
Query: 210 TFTCQAQNTADRTYKVARLKLLVKYAPKVQ 239
T+ C + Y+ L + V AP+ +
Sbjct: 148 TYYCTGKVWQ-LDYESEPLNITVIKAPREK 176
Score = 63.0 bits (153), Expect = 2e-11
Identities = 28/170 (16%), Positives = 52/170 (30%), Gaps = 32/170 (18%)
Query: 127 TVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEA 185
V + P RI +G+ + L C N + W +G+
Sbjct: 6 KVSLNPPWNRIFKGENVT--------LTCNGNNFFEVSSTKWFHNGS------------- 44
Query: 186 SVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGS 245
S+L + K + + CQ Q + + L V + +
Sbjct: 45 ----LSEETNSSLNIVNAKFEDSGEYKCQHQQVN----ESEPVYLEVFSDWLL--LQASA 94
Query: 246 NRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRH 295
++EG + L C N K +Y + + + + +TN T
Sbjct: 95 EVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVE 144
Score = 59.1 bits (143), Expect = 4e-10
Identities = 21/172 (12%), Positives = 54/172 (31%), Gaps = 18/172 (10%)
Query: 475 RPTIISH--RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHND--- 529
+P + + + G+ + C+ + W + G ++ ++ N
Sbjct: 4 KPKVSLNPPWNRI-FKGENVTLTCNGNNFFEVSSTKWFHNGSLSE-ETNSSLNIVNAKFE 61
Query: 530 --------VGKSEDSETLDVTYGPR-FRARPYSVQVDRGAGVNLLCDVDGN-PAPEITWI 579
+ +SE + + + + V G + L C N ++ +
Sbjct: 62 DSGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYY 121
Query: 580 HEDSD-KVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRP 630
+ K + N+++ + + +G YYC V + + P
Sbjct: 122 KDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP 173
Score = 49.5 bits (118), Expect = 8e-07
Identities = 14/100 (14%), Positives = 30/100 (30%), Gaps = 19/100 (19%)
Query: 629 RPTIISH--RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLK 686
+P + + + G+ + C+ + W + G
Sbjct: 4 KPKVSLNPPWNRI-FKGENVTLTCNGNNFFEVSSTKWFHNGSLS---------------- 46
Query: 687 EGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726
E S+L I ++ + G Y C S+ V + +
Sbjct: 47 EETNSSLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSD 86
Score = 43.7 bits (103), Expect = 7e-05
Identities = 17/111 (15%), Positives = 33/111 (29%), Gaps = 21/111 (18%)
Query: 24 QYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQ--WTKDDFALGPHRNLSGFDRYAM 81
+ ++ + + G + L C V + + KD AL
Sbjct: 82 EVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYE--------- 132
Query: 82 IGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP 132
++++ I ++D Y C L S +TV+ P
Sbjct: 133 -------NHNISITNATVEDSGTYYCTGKVWQLDY---ESEPLNITVIKAP 173
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 83.0 bits (205), Expect = 4e-18
Identities = 29/169 (17%), Positives = 60/169 (35%), Gaps = 8/169 (4%)
Query: 312 SNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCE 371
R++E V L C+ +P +W+ N+ + + AS ++ T +C+
Sbjct: 16 WYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQAS--SYFIDAATV-DDSGEYRCQ 72
Query: 372 VHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAP-EITWIHEDSD 430
S D L+V G P V ++L C N A ++T++
Sbjct: 73 TQLST-LS-DPVQLEVHIGWLLLQAPRWV-FKEEDPIHLRCHSWKNTALHKVTYLQNGKG 129
Query: 431 -KVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTI 478
K ++ + + + +G Y+C+ V + + +
Sbjct: 130 RKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAV 178
Score = 78.0 bits (192), Expect = 2e-16
Identities = 29/177 (16%), Positives = 55/177 (31%), Gaps = 23/177 (12%)
Query: 235 APKVQVSVIGSNRLV-EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNIT 293
PK V + V E V L C+ +P +W+ N+ + + AS ++ T
Sbjct: 5 LPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQAS--SYFIDAAT 62
Query: 294 RHQHDSIVKCEVQVS-----------------VIGSNRLVEGTDVRLYCKAEANPSHMKY 336
+C+ Q+S E + L C + N + K
Sbjct: 63 V-DDSGEYRCQTQLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKV 121
Query: 337 RWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVG-KSEDSETLDVTYGPR 392
+ N + ++ Y+ T + C S ++ + +T G
Sbjct: 122 TYLQNGKGRKYFHHNSDFYIPKATL-KDSGSYFCRGLVGSKNVSSETVQITITQGLA 177
Score = 73.8 bits (181), Expect = 6e-15
Identities = 27/190 (14%), Positives = 56/190 (29%), Gaps = 24/190 (12%)
Query: 551 PYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKA 610
P +V V L C +P + T + + + + + + D +G Y C+
Sbjct: 14 PQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASSYFIDAATVDDSGEYRCQT 73
Query: 611 SVMGFPEVGAEATVYL--KGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGE 668
+ + V L ++ D + C ++ KVT+ G+
Sbjct: 74 QLSTLSD-----PVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGK 128
Query: 669 EIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSN---PYGSDSVEIMLKP 725
+ S I ++ G Y C S++V+I +
Sbjct: 129 GRKYFHHN--------------SDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQ 174
Query: 726 QKSFPLLLIL 735
+ +
Sbjct: 175 GLAVSTISSF 184
Score = 64.9 bits (158), Expect = 6e-12
Identities = 23/158 (14%), Positives = 49/158 (31%), Gaps = 15/158 (9%)
Query: 489 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGS------------SDDYSVHNDVGKSEDS 536
D+ ++C P + W + I + S +Y + D
Sbjct: 22 KDSVTLKCQGAYSPEDQSTQWFHNESLISSQASSYFIDAATVDDSGEYRCQTQLSTLSDP 81
Query: 537 ETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAP-EITWIHEDSD-KVVGNSPNLT 594
L+V G P V ++L C N A ++T++ K ++ +
Sbjct: 82 VQLEVHIGWLLLQAPRWV-FKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSDFY 140
Query: 595 LLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTI 632
+ + +G Y+C+ V + + +
Sbjct: 141 IPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAV 178
Score = 60.7 bits (147), Expect = 2e-10
Identities = 32/209 (15%), Positives = 61/209 (29%), Gaps = 46/209 (22%)
Query: 33 EPQDQTAVVGSRVTLPCRVIDKTGV--LQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDY 90
EPQ + VTL C+ QW ++ + +
Sbjct: 13 EPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQAS------------------ 54
Query: 91 SLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDRE 150
S I +DD Y+CQ L +P L V + ++Q E+
Sbjct: 55 SYFIDAATVDDSGEYRCQTQLSTLSDPV------QLEVHIGWL---LLQAPRWVFKEEDP 105
Query: 151 IELECISANGKPPAEITW-IDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNT 209
I L C S ++T+ +G G + S + +
Sbjct: 106 IHLRCHSWKNTALHKVTYLQNGKGRKYFH---------------HNSDFYIPKATLKDSG 150
Query: 210 TFTCQAQNTADRTYKVARLKLLVKYAPKV 238
++ C+ + + +++ + V
Sbjct: 151 SYFCRGLVGS-KNVSSETVQITITQGLAV 178
Score = 58.7 bits (142), Expect = 7e-10
Identities = 23/169 (13%), Positives = 48/169 (28%), Gaps = 24/169 (14%)
Query: 397 PYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKA 456
P +V V L C +P + T + + + + + + D +G Y C+
Sbjct: 14 PQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASSYFIDAATVDDSGEYRCQT 73
Query: 457 SVMGFPEVGAEATVYL--KGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGE 514
+ + V L ++ D + C ++ KVT+ G+
Sbjct: 74 QLSTLSD-----PVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGK 128
Query: 515 EIGVGSSD--------------DY--SVHNDVG-KSEDSETLDVTYGPR 546
+ Y S ++ + +T G
Sbjct: 129 GRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLA 177
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 84.9 bits (209), Expect = 5e-18
Identities = 47/327 (14%), Positives = 84/327 (25%), Gaps = 56/327 (17%)
Query: 32 MEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAM-IGSDEEGDY 90
+ P G V + C L G + G+
Sbjct: 4 VSPSKVILPRGGSVLVTCSTS---------------CDQPKLLGIETPLPKKELLLPGNN 48
Query: 91 SLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDRE 150
+ +D++ C + + LTV P+ + + +
Sbjct: 49 RKVYELSNVQEDSQPMCYSNCP----DGQSTAKTFLTVYWTPERVELAPLPSWQP-VGKN 103
Query: 151 IELECISANGKPPAEIT--WIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHN 208
+ L C G P A +T + G + V E A V T + +++HH
Sbjct: 104 LTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEV---------TTTVLVRRDHHG 154
Query: 209 TTFTCQAQNTAD------RTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEA 262
F+C+ + A +L P ++ L T + C +
Sbjct: 155 ANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDG 214
Query: 263 NP--SHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTD 320
S + + DQ + +T K V V+
Sbjct: 215 LFPVSEAQVHLALGDQRLNP----------TVTYGNDSFSAKASVSVTAEDEG------T 258
Query: 321 VRLYCKAEANPSHMKYRWYINDQPVPA 347
RL C + + PA
Sbjct: 259 QRLTCAVILGNQSQETLQTVTIYSFPA 285
Score = 64.1 bits (155), Expect = 4e-11
Identities = 44/296 (14%), Positives = 88/296 (29%), Gaps = 31/296 (10%)
Query: 306 QVSVIGSNRLVE-GTDVRLYCKAE-ANPSHMKYRWYINDQPVPAAASATELYLTNITRHQ 363
Q SV S ++ G V + C P + + + + + ++Y ++ Q
Sbjct: 1 QTSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVY--ELSNVQ 58
Query: 364 HDSIVKCEVHNDVGKSEDSETLDVTYGP-RFRARPYSVQVDRGAGVNLLCDVDG-NPAPE 421
DS C + G+S L V + P R P G + L C V+G P
Sbjct: 59 EDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRAN 118
Query: 422 ITW--------IHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGA------- 466
+T + + T+L+ D + C+ + P+
Sbjct: 119 LTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSA 178
Query: 467 --EATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDY 524
+ ++ + V CS + P + + + +
Sbjct: 179 PYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRL--NPTV 236
Query: 525 SVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAG---VNLLCDVDGNPAPEIT 577
+ ND ++ S ++ + + V G + PAP +
Sbjct: 237 TYGNDSFSAKASVSVTAE---DEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVI 289
Score = 62.6 bits (151), Expect = 1e-10
Identities = 39/287 (13%), Positives = 76/287 (26%), Gaps = 47/287 (16%)
Query: 394 RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDL--AGR 451
P V + RG V + C + + K + N + ++ +
Sbjct: 3 SVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQ 62
Query: 452 YYCKASVMGF-PEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWS 510
C ++ TVY ++ + G + C P +T
Sbjct: 63 PMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVV 122
Query: 511 -YRGEE-----------------IGVGSSDD---YS--VHNDVG--------KSEDSETL 539
RGE+ + V +S D+ + L
Sbjct: 123 LLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQL 182
Query: 540 DVTYGPRFRAR-PYSVQVDRGAGVNLLCDVDGN-PAPEITWIHEDSDKVV-------GNS 590
P + ++ ++C +DG P E D+ + +S
Sbjct: 183 QTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDS 242
Query: 591 PNLTLLMT---SDDLAGRYYCKASVMGFP-EVGAEATVYLKGRPTII 633
+ ++ D+ R C + E T+Y P +I
Sbjct: 243 FSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVI 289
Score = 60.3 bits (145), Expect = 8e-10
Identities = 33/223 (14%), Positives = 66/223 (29%), Gaps = 27/223 (12%)
Query: 28 QKFAMEPQDQTAVVGSRVTLPCRVID----KTGVLQWTKDDFALGPHRNLSGFDRYAMIG 83
++ + P VG +TL C+V + + + L +
Sbjct: 87 ERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVG--------- 137
Query: 84 SDEEGDYSLEIYPVMLDDDARYQCQV--STGILGEPAIRSRFATLTVLV---PPDPPRIV 138
E + + + A + C+ G + A + P PP++V
Sbjct: 138 --EPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLV 195
Query: 139 QGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTL 198
L D + + C P +E G N VT + K+++
Sbjct: 196 SPRVL--EVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYG----NDSFSAKASV 249
Query: 199 VLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVS 241
+T ++ TC + + + AP V ++
Sbjct: 250 SVT-AEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILT 291
Score = 59.5 bits (143), Expect = 1e-09
Identities = 27/188 (14%), Positives = 52/188 (27%), Gaps = 12/188 (6%)
Query: 548 RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDL--AGR 605
P V + RG V + C + + K + N + ++ +
Sbjct: 3 SVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQ 62
Query: 606 YYCKASVMGF-PEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWS 664
C ++ TVY ++ + G + C P +T
Sbjct: 63 PMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVV 122
Query: 665 -YRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723
RGE+ E + E + T + R H ++C +E+
Sbjct: 123 LLRGEKELKR--------EPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFE 174
Query: 724 KPQKSFPL 731
+ L
Sbjct: 175 NTSAPYQL 182
Score = 56.8 bits (136), Expect = 1e-08
Identities = 41/291 (14%), Positives = 84/291 (28%), Gaps = 52/291 (17%)
Query: 239 QVSVIGSNRLVE-GTDVRLYCKAE-ANPSHMKYRWYINDQPVPAAASATELYLTNITRHQ 296
Q SV S ++ G V + C P + + + + + ++Y ++ Q
Sbjct: 1 QTSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVY--ELSNVQ 58
Query: 297 HDSIVKCEV--------------------QVSVIGSNRLV-EGTDVRLYCKAEAN--PSH 333
DS C +V + G ++ L C+ E ++
Sbjct: 59 EDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRAN 118
Query: 334 MKYRWYINDQPVPAAASATELYLTNIT----RHQHDSIVKCEVHNDVG--------KSED 381
+ ++ + + E T R H + C D+ +
Sbjct: 119 LTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSA 178
Query: 382 SETLDVTYGPRFRAR-PYSVQVDRGAGVNLLCDVDGN-PAPEITWIHEDSDKVV------ 433
L P + ++ ++C +DG P E D+ +
Sbjct: 179 PYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTY 238
Query: 434 -GNSPNLTLLMT---SDDLAGRYYCKASVMGFP-EVGAEATVYLKGRPTII 479
+S + ++ D+ R C + E T+Y P +I
Sbjct: 239 GNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVI 289
Score = 54.1 bits (129), Expect = 9e-08
Identities = 37/285 (12%), Positives = 74/285 (25%), Gaps = 42/285 (14%)
Query: 488 PGDTARVECSAFSIPPPEKVTWS-YRGEEIGVGSSDDYSVHNDVGKSEDSE--------- 537
G + V CS S P+ + ++ + ++ V+ EDS+
Sbjct: 13 RGGSVLVTCST-SCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNCPD 71
Query: 538 -TLDVTYGPRFRARPYSVQ-------VDRGAGVNLLCDVDG-NPAPEITW--------IH 580
P V+ G + L C V+G P +T +
Sbjct: 72 GQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELK 131
Query: 581 EDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGA---------EATVYLKGRPT 631
+ T+L+ D + C+ + P+ + ++
Sbjct: 132 REPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATP 191
Query: 632 IISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKS 691
+ V CS + P + + + + Y K +
Sbjct: 192 PQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSV 251
Query: 692 TLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFPLLLILT 736
T + + C+V S + +ILT
Sbjct: 252 T-----AEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILT 291
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 81.8 bits (202), Expect = 5e-18
Identities = 26/161 (16%), Positives = 58/161 (36%), Gaps = 8/161 (4%)
Query: 312 SNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCE 371
++E V L C+ +P +W+ N+ + + A+ ++ T + +C+
Sbjct: 16 WYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS--QASSYFIDAATVN-DSGEYRCQ 72
Query: 372 VHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGN-PAPEITWIHEDSD 430
+ D L+V G P V ++L C N ++T++ D
Sbjct: 73 TNLSTL--SDPVQLEVHIGWLLLQAPRWV-FKEEDPIHLRCHSWKNTALHKVTYLQNGKD 129
Query: 431 -KVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATV 470
K ++ + + + +G Y+C+ V +
Sbjct: 130 RKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNI 170
Score = 79.5 bits (196), Expect = 3e-17
Identities = 25/178 (14%), Positives = 54/178 (30%), Gaps = 23/178 (12%)
Query: 232 VKYAPKVQVSVIGSNRLV-EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLT 290
+ PK V + V E V L C+ +P +W+ N+ + + A+ ++
Sbjct: 2 TEDLPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS--QASSYFID 59
Query: 291 NITRHQHDSIVKCEVQVSV-----------------IGSNRLVEGTDVRLYCKAEANPSH 333
T + +C+ +S E + L C + N +
Sbjct: 60 AATVN-DSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTAL 118
Query: 334 MKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGK-SEDSETLDVTYG 390
K + N + ++ ++ T C S ++ + +T
Sbjct: 119 HKVTYLQNGKDRKYFHHNSDFHIPKATLK-DSGSYFCRGLVGSKNVSSETVNITITQA 175
Score = 73.4 bits (180), Expect = 5e-15
Identities = 24/174 (13%), Positives = 52/174 (29%), Gaps = 20/174 (11%)
Query: 551 PYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKA 610
P V V L C +P T + + + + + + + +G Y C+
Sbjct: 14 PQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDAATVNDSGEYRCQT 73
Query: 611 SVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEI 670
++ + + + ++ D + C ++ KVT+ G++
Sbjct: 74 NLSTLSD---PVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDR 130
Query: 671 GVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSN---PYGSDSVEI 721
+ S I ++ G Y C S++V I
Sbjct: 131 KYFHHN--------------SDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNI 170
Score = 64.5 bits (157), Expect = 4e-12
Identities = 23/165 (13%), Positives = 51/165 (30%), Gaps = 16/165 (9%)
Query: 475 RPTIISHRTQFGI-PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSD----------- 522
+ + + + D+ ++C P W + I +S
Sbjct: 7 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDAATVNDS 66
Query: 523 -DYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGN-PAPEITWIH 580
+Y ++ D L+V G P V ++L C N ++T++
Sbjct: 67 GEYRCQTNLSTLSDPVQLEVHIGWLLLQAPRWV-FKEEDPIHLRCHSWKNTALHKVTYLQ 125
Query: 581 EDSD-KVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATV 624
D K ++ + + + +G Y+C+ V +
Sbjct: 126 NGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNI 170
Score = 63.4 bits (154), Expect = 1e-11
Identities = 30/206 (14%), Positives = 60/206 (29%), Gaps = 46/206 (22%)
Query: 33 EPQDQTAVVGSRVTLPCRVIDKTGV--LQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDY 90
EPQ + + VTL C+ QW ++ + +
Sbjct: 13 EPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQAS------------------ 54
Query: 91 SLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDRE 150
S I ++D Y+CQ + L +P L V + ++Q E+
Sbjct: 55 SYFIDAATVNDSGEYRCQTNLSTLSDPV------QLEVHIGW---LLLQAPRWVFKEEDP 105
Query: 151 IELECISANGKPPAEITW-IDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNT 209
I L C S ++T+ +G + S + +
Sbjct: 106 IHLRCHSWKNTALHKVTYLQNGKDRKYFH---------------HNSDFHIPKATLKDSG 150
Query: 210 TFTCQAQNTADRTYKVARLKLLVKYA 235
++ C+ + + + + A
Sbjct: 151 SYFCRGLVGSKNVSS-ETVNITITQA 175
Score = 58.3 bits (141), Expect = 7e-10
Identities = 17/133 (12%), Positives = 43/133 (32%), Gaps = 4/133 (3%)
Query: 397 PYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKA 456
P V V L C +P T + + + + + + + +G Y C+
Sbjct: 14 PQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDAATVNDSGEYRCQT 73
Query: 457 SVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEI 516
++ + + + ++ D + C ++ KVT+ G++
Sbjct: 74 NLSTLSD---PVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDR 130
Query: 517 GV-GSSDDYSVHN 528
+ D+ +
Sbjct: 131 KYFHHNSDFHIPK 143
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 81.0 bits (199), Expect = 5e-18
Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 11/118 (9%)
Query: 24 QYREQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDD---FALGPHRNLSGFDRY 79
+ D+T V G V L C+V D + LQW+ G R L +R
Sbjct: 35 NLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRD-NRI 93
Query: 80 AMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRI 137
++ S + S+ I V L D+ Y C + T +R+ + +TVL P P I
Sbjct: 94 QLVTSTP-HELSISISNVALADEGEYTCSIFTM-----PVRTAKSLVTVLGIPQKPII 145
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 82.3 bits (203), Expect = 6e-17
Identities = 44/298 (14%), Positives = 85/298 (28%), Gaps = 29/298 (9%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTGV--LQWTKDDFALGPHRNL---------SGFDRYAMI 82
+ + G L C V V +QW + GP R L +
Sbjct: 10 DKSVSVAAGESAILHCTVTSLIPVGPIQWFRGA---GPARELIYNQKEGHFPRVTTVSES 66
Query: 83 GSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDT 142
E D+S+ I + D Y C + +S T + +V G
Sbjct: 67 TKRENMDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPA 126
Query: 143 LYTTEDREIELECISANGKP-PAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLT 201
T + C S P + W + + + ST +
Sbjct: 127 ARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIH-STAKVV 185
Query: 202 PKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAE 261
+E ++ C+ + + + L + + + V + C+
Sbjct: 186 LTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVR 245
Query: 262 A-NPSHMKYRWYINDQPVPAAASATEL-----------YLT-NITRHQHDSIVKCEVQ 306
P ++ W N ++T +L N++ H+ D + C+V+
Sbjct: 246 KFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVE 303
Score = 46.5 bits (110), Expect = 2e-05
Identities = 28/205 (13%), Positives = 57/205 (27%), Gaps = 29/205 (14%)
Query: 28 QKFAMEPQDQTAVVGSRVTLPCRVID---KTGVLQWTKDDFALGPHRNLSGFDRYAMIGS 84
+ A V+ C + L+W K+ L +G
Sbjct: 118 SAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELS-----DFQTNVDPVGE 172
Query: 85 DEEGDYS----LEIYPVMLDDDARYQCQV-----STGILGEPAIRSRFATLTVLVPPDPP 135
YS ++ D ++ C+V L A S + +
Sbjct: 173 S--VSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQ 230
Query: 136 RIVQGDTLYTTEDREIELECISANGKP-PAEITWIDGTGTVMSNVRVTEEASVDGRRTTV 194
+ + + + C P ++TW++ + T + DG +
Sbjct: 231 PVRAENQ--------VNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWM 282
Query: 195 KSTLVLTPKKEHHNTTFTCQAQNTA 219
S L++ + TCQ ++
Sbjct: 283 -SWLLVNVSAHRDDVKLTCQVEHDG 306
Score = 43.8 bits (103), Expect = 2e-04
Identities = 42/210 (20%), Positives = 66/210 (31%), Gaps = 52/210 (24%)
Query: 551 PYSVQVDRGAGVNLLCDVDGN-----------PAPEITWIHE-----------DSDKVVG 588
SV V G L C V P I+ S+
Sbjct: 10 DKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKR 69
Query: 589 NSPNLTLLMTS---DDLAGRYYC----KASVMGFPEVGAEATVYLKGRP--TIISHRTQF 639
+ + ++ +++ D AG YYC K S + GA + ++ +P ++S
Sbjct: 70 ENMDFSISISNITPAD-AGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAAR 128
Query: 640 GIPGDTARVECSA--FSIPPPEKVTWSYRGEEIG--------VGSSDDYSVLEDPLKEGI 689
P T C + FS P + W G E+ VG S YS+
Sbjct: 129 ATPQHTVSFTCESHGFS-PRDITLKWFKNGNELSDFQTNVDPVGESVSYSI--------- 178
Query: 690 KSTLIIRESRHDHFGVYNCSVSNPYGSDSV 719
ST + +R D C V++
Sbjct: 179 HSTAKVVLTREDVHSQVICEVAHVTLQGDP 208
Score = 37.6 bits (87), Expect = 0.015
Identities = 45/301 (14%), Positives = 86/301 (28%), Gaps = 61/301 (20%)
Query: 153 LECISANGKPPAEITWIDGTG---TVMSNVRVTEEASVDGRRTTVK-----STLVLTPKK 204
L C + P I W G G ++ N + V + K ++ ++
Sbjct: 23 LHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNIT 82
Query: 205 EHHNTTFTCQAQNTADRTY---KVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAE 261
T+ C A +L V+ P V + R V C++
Sbjct: 83 PADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESH 142
Query: 262 A-NPSHMKYRWYINDQPVPAAASATELYLTNIT------------RHQHDSIVKCEVQ-- 306
+P + +W+ N + + + +++ R S V CEV
Sbjct: 143 GFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHV 202
Query: 307 ---------------------VSVIGSNRLVEGTDVRLYCKAEA-NPSHMKYRWYINDQP 344
+ + V + C+ P ++ W N
Sbjct: 203 TLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKFYPQRLQLTWLENGNV 262
Query: 345 VPAAASATEL-----------YLT-NITRHQHDSIVKCEV-HNDVGKSEDSETLDVTYGP 391
++T +L N++ H+ D + C+V H+ S L V+
Sbjct: 263 SRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKVSTRH 322
Query: 392 R 392
Sbjct: 323 H 323
Score = 36.5 bits (84), Expect = 0.035
Identities = 54/355 (15%), Positives = 97/355 (27%), Gaps = 97/355 (27%)
Query: 397 PYSVQVDRGAGVNLLCDVDGN-----------PAPEITWIHE-----------DSDKVVG 434
SV V G L C V P I+ S+
Sbjct: 10 DKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKR 69
Query: 435 NSPNLTLLMTS---DDLAGRYYC----KASVMGFPEVGAEATVYLKGRP--TIISHRTQF 485
+ + ++ +++ D AG YYC K S + GA + ++ +P ++S
Sbjct: 70 ENMDFSISISNITPAD-AGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAAR 128
Query: 486 GIPGDTARVECSA--FSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTY 543
P T C + FS P + W + + +
Sbjct: 129 ATPQHTVSFTCESHGFS-PRDITLKWF----------KNGNELSDFQ----------TNV 167
Query: 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLA 603
P + YS+ +++T +D+
Sbjct: 168 DPVGESVSYSI-----------------------------------HSTAKVVLTREDVH 192
Query: 604 GRYYCKA---SVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSA--FSIPPP 658
+ C+ ++ G P G P + Q + V C F P
Sbjct: 193 SQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKFY-PQR 251
Query: 659 EKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNP 713
++TW G ++ + +D S L++ S H C V +
Sbjct: 252 LQLTWLENGNVSRTETASTVTENKDGTYN-WMSWLLVNVSAHRDDVKLTCQVEHD 305
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 78.8 bits (194), Expect = 9e-17
Identities = 35/200 (17%), Positives = 62/200 (31%), Gaps = 32/200 (16%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPE--ITWIHEDSDKVVGNSPNLTLLMTSDDL 602
P V+V G G+ LLCD + + W+ + + + T+ +L
Sbjct: 9 PFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNL 68
Query: 603 ---------AGRYYCKASVMGFPEVGAEATVYLKGRPT----------IISHRTQFGIPG 643
G Y C S + + L P ++ + + + G
Sbjct: 69 YIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMG 128
Query: 644 DTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHF 703
+EC A P P+ + W E + S + L I + +
Sbjct: 129 QNVTLECFALGNPVPD-IRWRKVLEPM---PSTAEISTSG-------AVLKIFNIQLEDE 177
Query: 704 GVYNCSVSNPYGSDSVEIML 723
G+Y C N G D + +
Sbjct: 178 GIYECEAENIRGKDKHQARI 197
Score = 77.2 bits (190), Expect = 3e-16
Identities = 40/217 (18%), Positives = 72/217 (33%), Gaps = 28/217 (12%)
Query: 20 GSLAQYREQKFAMEPQDQTAVVGSRVTLPCRV---IDKTGVLQWTKDDFALGPHRNLSGF 76
G + Y + E + G + L C +W ++F + +
Sbjct: 1 GPGSGYLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMD---K 57
Query: 77 DRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVP----P 132
R+ + +L I V D Y C VS+ ++ S+F L + P
Sbjct: 58 RRFVSQTNG-----NLYIANVEASDKGNYSCFVSS-PSITKSVFSKFIPLIPIPERTTKP 111
Query: 133 DPPRIVQG-DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRR 191
P IV +Y + + LEC A G P +I W + S ++
Sbjct: 112 YPADIVVQFKDVYALMGQNVTLECF-ALGNPVPDIRWRKVLEPMPSTAEISTS------- 163
Query: 192 TTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARL 228
+ L + + + C+A+N + AR+
Sbjct: 164 ---GAVLKIFNIQLEDEGIYECEAENIRGKDKHQARI 197
Score = 74.2 bits (182), Expect = 4e-15
Identities = 34/168 (20%), Positives = 52/168 (30%), Gaps = 25/168 (14%)
Query: 314 RLVEGTDVRLYCKAEAN-PSHMKYRWYINDQPVPAAASATE--------LYLTNITRHQH 364
R+ EG + L C + P + YRW +N+ PV LY+ N+
Sbjct: 19 RVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEA-SD 77
Query: 365 DSIVKCEVHNDVGKSEDSETLDVT----------YGPRFRARPYSVQVDRGAGVNLLCDV 414
C V + Y + V G V L C
Sbjct: 78 KGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFA 137
Query: 415 DGNPAPEITWIHED-----SDKVVGNSPNLTLLMTSDDLAGRYYCKAS 457
GNP P+I W + ++ + L + + G Y C+A
Sbjct: 138 LGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAE 185
Score = 61.8 bits (150), Expect = 6e-11
Identities = 24/163 (14%), Positives = 39/163 (23%), Gaps = 40/163 (24%)
Query: 489 GDTARVECSA-FSIPPPEKVTWSYRGEEIGVGSSD----------------------DYS 525
G + C + P W + + +YS
Sbjct: 23 GKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYS 82
Query: 526 --VHNDVGKSEDSETLDVT----------YGPRFRARPYSVQVDRGAGVNLLCDVDGNPA 573
V + Y + V G V L C GNP
Sbjct: 83 CFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPV 142
Query: 574 PEITWIHED-----SDKVVGNSPNLTLLMTSDDLAGRYYCKAS 611
P+I W + ++ + L + + G Y C+A
Sbjct: 143 PDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAE 185
Score = 61.1 bits (148), Expect = 1e-10
Identities = 32/192 (16%), Positives = 57/192 (29%), Gaps = 42/192 (21%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPE--ITWIHEDSDKVVGNSPNLTLLMTSDDL 448
P V+V G G+ LLCD + + W+ + + + T+ +L
Sbjct: 9 PFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNL 68
Query: 449 ---------AGRYYCKASVMGFPEVGAEATVYLKGRPT----------IISHRTQFGIPG 489
G Y C S + + L P ++ + + + G
Sbjct: 69 YIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMG 128
Query: 490 DTARVECSAFSIPPPEKVTWSYRGEEI----------------GVGSSDD--YS--VHND 529
+EC A P P+ + W E + + D+ Y N
Sbjct: 129 QNVTLECFALGNPVPD-IRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENI 187
Query: 530 VGKSEDSETLDV 541
GK + + V
Sbjct: 188 RGKDKHQARIYV 199
Score = 51.8 bits (124), Expect = 2e-07
Identities = 34/178 (19%), Positives = 58/178 (32%), Gaps = 25/178 (14%)
Query: 130 VPPDPPRIVQGDTLYTTEDREIELECISANGKPPA-EITWIDGTGTVMSNVRVTEEASVD 188
+ P PP + E + + L C P W+ V ++D
Sbjct: 7 LDPFPPEERP--EVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPV--------FITMD 56
Query: 189 GRRTTVKS--TLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLV-------KYAPKVQ 239
RR ++ L + + ++C + + ++ L+ K P
Sbjct: 57 KRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADI 116
Query: 240 VSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA----SATELYLTNIT 293
V + G +V L C A NP RW +P+P+ A S L + NI
Sbjct: 117 VVQFKDVYALMGQNVTLECFALGNPVP-DIRWRKVLEPMPSTAEISTSGAVLKIFNIQ 173
Score = 51.0 bits (122), Expect = 3e-07
Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 20/110 (18%)
Query: 5 TRVQSALWVLLALSMGSLAQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQW 60
V S L+ + + Y ++ +D A++G VTL C G ++W
Sbjct: 92 KSVFSKFIPLIPIPERTTKPY-PADIVVQFKDVYALMGQNVTLECFA---LGNPVPDIRW 147
Query: 61 TKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVS 110
K + +S L+I+ + L+D+ Y+C+
Sbjct: 148 RKVLEPMPSTAEISTSGA------------VLKIFNIQLEDEGIYECEAE 185
Score = 49.1 bits (117), Expect = 1e-06
Identities = 17/89 (19%), Positives = 25/89 (28%), Gaps = 7/89 (7%)
Query: 643 GDTARVECSA-FSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHD 701
G + C + P W + + V + L I
Sbjct: 23 GKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQT------NGNLYIANVEAS 76
Query: 702 HFGVYNCSVSNPYGSDSVEIMLKPQKSFP 730
G Y+C VS+P + SV P P
Sbjct: 77 DKGNYSCFVSSPSITKSVFSKFIPLIPIP 105
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 75.7 bits (186), Expect = 1e-16
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 9/102 (8%)
Query: 34 PQDQTAVVGSRVTLPCRVI-DKTGVLQWTKDDFAL--GPHRNLSGFDRYAMIGSDEEGDY 90
Q+ T V G L CRV + LQW+ + +R ++ + +
Sbjct: 13 TQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASW-HEL 71
Query: 91 SLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP 132
S+ + V L D+ +Y C + T +++ A LTVL P
Sbjct: 72 SISVSDVSLSDEGQYTCSLFTM-----PVKTSKAYLTVLGVP 108
Score = 31.0 bits (70), Expect = 0.58
Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 10/75 (13%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEI-----GVGSSDD-YSVLEDPLKEGIKSTLIIR 696
G TA + C + WS ++ D+ ++ E ++ +
Sbjct: 21 GGTAILTCRVDQNDNT-SLQWSNPAQQTLYFDDKKALRDNRIELVRASWHE---LSISVS 76
Query: 697 ESRHDHFGVYNCSVS 711
+ G Y CS+
Sbjct: 77 DVSLSDEGQYTCSLF 91
Score = 29.1 bits (65), Expect = 2.2
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 390 GPRF-RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD 430
G + +V V G L C VD N + W +
Sbjct: 5 GSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQ 46
Score = 29.1 bits (65), Expect = 2.2
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 544 GPRF-RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD 584
G + +V V G L C VD N + W +
Sbjct: 5 GSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQ 46
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 81.1 bits (199), Expect = 2e-16
Identities = 42/235 (17%), Positives = 73/235 (31%), Gaps = 33/235 (14%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRVIDK------TGVLQWTKDDFALGPHRNLSGFDRYAMIG 83
P + + + C +D + W + + N+
Sbjct: 123 PMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVI--------- 173
Query: 84 SDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD---PPRIV-- 138
+L ++ ++ Y C V+ G +R T+ V+ P PP I
Sbjct: 174 ---PEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSP 230
Query: 139 -QGDTLYTTEDREIELEC---ISANGKPPAEITW-IDGTGTVMSNVRVTEEASVDGRRT- 192
E+ + C S E+ W IDG + VT S+ RT
Sbjct: 231 NDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTE 290
Query: 193 --TVKSTLVLTP-KKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIG 244
T L + E ++ C A++ K A++K V AP+ V +
Sbjct: 291 DETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKV-PAPRYTVELAC 344
Score = 79.5 bits (195), Expect = 7e-16
Identities = 37/239 (15%), Positives = 68/239 (28%), Gaps = 34/239 (14%)
Query: 526 VHNDVGKSEDSETLDV----TYGPRFRARPYSVQVDRGAGVNLLCD-----VDGNPAPEI 576
+ N S+ + L+V + P + C + P I
Sbjct: 98 LRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTI 157
Query: 577 TWIHE-----DSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMG---FPEVGAEATVYLKG 628
TW + + V+ NL+ L+ G Y C + + TV + G
Sbjct: 158 TWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVG 217
Query: 629 RPTII---------SHRTQFGIPGDTARVECSAFSIP---PPEKVTWSYRGEEIGVGSSD 676
P H PG+ + C+ + +V W+ G++ + D
Sbjct: 218 SPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITID 277
Query: 677 DYSV----LEDPLKEGIKSTLIIRESRHDHFGV-YNCSVSNPYGSDSVEIMLKPQKSFP 730
E L I++ + Y C + G + +K + P
Sbjct: 278 VTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKVPAP 336
Score = 66.0 bits (160), Expect = 1e-11
Identities = 41/278 (14%), Positives = 71/278 (25%), Gaps = 51/278 (18%)
Query: 316 VEGTDVRLYCKAEANPSHMKY----------RWYINDQPVPAAASATELYLTNITRHQHD 365
E R+ C + Y WY Q N + D
Sbjct: 20 FEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKD 79
Query: 366 SIV------------KCEVHNDVGKSEDSETLDV----TYGPRFRARPYSVQVDRGAGVN 409
+ C + N S+ + L+V + P
Sbjct: 80 VLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQR 139
Query: 410 LLCD-----VDGNPAPEITWIHE-----DSDKVVGNSPNLTLLMTSDDLAGRYYCKASVM 459
+ C + P ITW + + V+ NL+ L+ G Y C +
Sbjct: 140 ITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYP 199
Query: 460 G---FPEVGAEATVYLKGRPTII---------SHRTQFGIPGDTARVECSAFSIP---PP 504
+ TV + G P H PG+ + C+ +
Sbjct: 200 ENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSR 259
Query: 505 EKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVT 542
+V W+ G++ + D + + ET
Sbjct: 260 NEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQI 297
Score = 63.0 bits (152), Expect = 2e-10
Identities = 36/276 (13%), Positives = 68/276 (24%), Gaps = 47/276 (17%)
Query: 33 EPQDQTAVVGSRVTLPCRVIDKTG------------VLQWTKDDFALGPHRNLSGFDRYA 80
+ + C + + L W ++
Sbjct: 13 TMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPEN 72
Query: 81 MIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLV--PPDPPRIV 138
I + L P +L+D Y C + L V+ +
Sbjct: 73 RISKE---KDVLWFRPTLLNDTGNYTCMLR----NTTYCSKVAFPLEVVQKDSCFNSPMK 125
Query: 139 QGDTLYTTEDREIELECIS----ANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTV 194
E + C + ITW G + + V E
Sbjct: 126 LPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPE---------- 175
Query: 195 KSTLVLTPKKEHHNTTFTCQAQNTAD-RTYKVAR-LKLLVKYAPKVQVSVIGSNRL---- 248
L +N +TC + RT+ + R L + V +PK V + +
Sbjct: 176 GMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVV 235
Query: 249 ---VEGTDVRLYCKAEANPS---HMKYRWYINDQPV 278
G ++ + C + + W I+ +
Sbjct: 236 YEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKP 271
Score = 42.9 bits (100), Expect = 4e-04
Identities = 37/320 (11%), Positives = 69/320 (21%), Gaps = 104/320 (32%)
Query: 249 VEGTDVRLYCKAEANPSHMKY----------RWYINDQPVPAAASATE------------ 286
E R+ C + Y WY Q
Sbjct: 20 FEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKD 79
Query: 287 -LYLTNITRHQHDS------------IVKCEVQVSVIGSN-------------RLVEGTD 320
L+ +D+ K + V+ + +E
Sbjct: 80 VLWFRPTL--LNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGI 137
Query: 321 VRLYC-----KAEANPSHMKYRWYINDQPVPAA----ASATELYLTNITRHQHDS----- 366
R+ C ++ WY+ + L ++
Sbjct: 138 QRITCPNVDGYFPSSVKP-TITWYMGCYKIQNFNNVIPEGMNLSFLIALIS--NNGNYTC 194
Query: 367 IVKCEVHNDVGKSEDSETLDVTYGPRFRARPY--------SVQVDRGAGVNLLCDV---- 414
+V + + T+ V P+ P + + G + + C V
Sbjct: 195 VVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSF 254
Query: 415 DGNPAPEITWIHEDSD----------------KVVGNSPNLTLLM----TSDDLAGRYYC 454
+ E+ W + + +L TS+DL Y C
Sbjct: 255 LMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVC 314
Query: 455 KAS-VMGFPEVGAEATVYLK 473
A G +K
Sbjct: 315 HARSAKGE----VAKAAKVK 330
Score = 41.0 bits (95), Expect = 0.002
Identities = 15/100 (15%), Positives = 34/100 (34%), Gaps = 11/100 (11%)
Query: 641 IPGDTARVECSAFSIP----------PPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIK 690
+ AR++C F + W + ++ + ++ + E+ + + K
Sbjct: 20 FEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKE-K 78
Query: 691 STLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFP 730
L R + + G Y C + N V L+ +
Sbjct: 79 DVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDS 118
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 77.9 bits (191), Expect = 2e-16
Identities = 25/194 (12%), Positives = 52/194 (26%), Gaps = 21/194 (10%)
Query: 554 VQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV---------GNSPNLTLLMTSDDLAG 604
+ ++ V + C ++ +K + T+ AG
Sbjct: 19 ITENKNKTVVIPCLG-SISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAG 77
Query: 605 RYYCKASVMGFPEVGAEATVYLKGRP----TIISHRTQFGIPGDTARVECSAFSIPPPE- 659
+C+A + V + G + G+ + C+A +
Sbjct: 78 MVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGI 137
Query: 660 KVTWSYRGEEIGVGS--SDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD 717
W Y + + D + STL I G+Y C+ S+ +
Sbjct: 138 DFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTK 197
Query: 718 SVEIML----KPQK 727
+ P +
Sbjct: 198 KNSTFVRVHEDPIE 211
Score = 62.5 bits (151), Expect = 5e-11
Identities = 21/199 (10%), Positives = 44/199 (22%), Gaps = 13/199 (6%)
Query: 38 TAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPV 97
T V +PC + + + + G I
Sbjct: 20 TENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKG--------FTIPSY 71
Query: 98 MLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELEC-I 156
M+ C+ E + + V + + + ++ L C
Sbjct: 72 MISYAGMVFCEAKIN--DESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTA 129
Query: 157 SANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVK--STLVLTPKKEHHNTTFTCQ 214
+ W + V + K STL + +TC
Sbjct: 130 RTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCA 189
Query: 215 AQNTADRTYKVARLKLLVK 233
A + +++
Sbjct: 190 ASSGLMTKKNSTFVRVHED 208
Score = 50.6 bits (120), Expect = 6e-07
Identities = 18/172 (10%), Positives = 43/172 (25%), Gaps = 14/172 (8%)
Query: 132 PDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRR 191
+ +++ + + C+ + ++ + DG R
Sbjct: 8 ASVSDQHGVVYITENKNKTVVIPCLGSI--SNLNVSLCARYPE--------KRFVPDGNR 57
Query: 192 TTV--KSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAP-KVQVSVIGSNRL 248
+ K + + C+A+ + + + ++V Y V +S L
Sbjct: 58 ISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIEL 117
Query: 249 VEGTDVRLYCKAEANPSHM-KYRWYINDQPVPAAASATELYLTNITRHQHDS 299
G + L C A + + W T
Sbjct: 118 SVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKF 169
Score = 48.6 bits (115), Expect = 3e-06
Identities = 16/146 (10%), Positives = 37/146 (25%), Gaps = 15/146 (10%)
Query: 400 VQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV---------GNSPNLTLLMTSDDLAG 450
+ ++ V + C ++ +K + T+ AG
Sbjct: 19 ITENKNKTVVIPCLG-SISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAG 77
Query: 451 RYYCKASVMGFPEVGAEATVYLKGRP----TIISHRTQFGIPGDTARVECSAFSIPPPE- 505
+C+A + V + G + G+ + C+A +
Sbjct: 78 MVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGI 137
Query: 506 KVTWSYRGEEIGVGSSDDYSVHNDVG 531
W Y + + + G
Sbjct: 138 DFNWEYPSSKHQHKKLVNRDLKTQSG 163
Score = 48.2 bits (114), Expect = 3e-06
Identities = 16/107 (14%), Positives = 30/107 (28%), Gaps = 7/107 (6%)
Query: 33 EPQDQTAVVGSRVTLPCRVI---DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGD 89
VG ++ L C + W + ++ + ++
Sbjct: 111 PSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFL 170
Query: 90 YSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPR 136
+L I V D Y C S+G+ + + V P R
Sbjct: 171 STLTIDGVTRSDQGLYTCAASSGL-MT---KKNSTFVRVHEDPIEGR 213
Score = 42.9 bits (100), Expect = 2e-04
Identities = 22/170 (12%), Positives = 44/170 (25%), Gaps = 30/170 (17%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVPA------AASATELYLTNITRHQHDSIVKC 370
+ V + C + ++ ++ S + + + +V C
Sbjct: 23 KNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMI-SYAGMVFC 81
Query: 371 EVHNDVGKSEDSETLDVTYGPRFR----ARPYSVQVDRGAGVNLLCDVDGNP--APEITW 424
E + + + V G R + + +++ G + L C + W
Sbjct: 82 EAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNW 141
Query: 425 IHEDSDKVVGNSPNLTLLMTSDDL-----------------AGRYYCKAS 457
+ S N L S G Y C AS
Sbjct: 142 EYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAAS 191
Score = 35.9 bits (82), Expect = 0.039
Identities = 23/171 (13%), Positives = 37/171 (21%), Gaps = 49/171 (28%)
Query: 488 PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVH-------------------- 527
T + C SI V+ R E +
Sbjct: 23 KNKTVVIPCLG-SISNL-NVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVF 80
Query: 528 ----NDVGKSEDSETLDVTYGPRFR----ARPYSVQVDRGAGVNLLCDVDGNP--APEIT 577
+ + + V G R + + +++ G + L C +
Sbjct: 81 CEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFN 140
Query: 578 WIHEDSDKVVGNSPNLTLLMTSDDL-----------------AGRYYCKAS 611
W + S N L S G Y C AS
Sbjct: 141 WEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAAS 191
Score = 32.8 bits (74), Expect = 0.36
Identities = 13/104 (12%), Positives = 24/104 (23%), Gaps = 16/104 (15%)
Query: 304 EVQVSVIGSNRLVEGTDVRLYCKAEANPSHM-KYRWYINDQPVPAAASATELYLTNITRH 362
+V +S L G + L C A + + W T
Sbjct: 106 DVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSE 165
Query: 363 QHDSIV---------------KCEVHNDVGKSEDSETLDVTYGP 391
+ C + + ++S + V P
Sbjct: 166 MKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDP 209
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 72.3 bits (177), Expect = 3e-15
Identities = 19/108 (17%), Positives = 35/108 (32%), Gaps = 7/108 (6%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRVID-KTGVLQW-TKDDFALGPHRNLSGFDRYAMIGSDEE 87
+ T G +TL C K LQW T F + + + +
Sbjct: 4 LTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSA 63
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPP 135
S+ + V L D+ Y+C + ++ ++ + VL
Sbjct: 64 NQLSITVPNVTLQDEGVYKCLHYSD-----SVSTKEVKVIVLATMKGE 106
Score = 33.4 bits (76), Expect = 0.11
Identities = 15/110 (13%), Positives = 25/110 (22%), Gaps = 20/110 (18%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDS------DKVVGNSPNLTLLMT 444
++ V+ G + L C + W+ + V + LL
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61
Query: 445 SDDL------------AGRYYCKASVMGFPEVGAEATVYLKGRPTIISHR 482
S + G Y C E V + R
Sbjct: 62 SANQLSITVPNVTLQDEGVYKC--LHYSDSVSTKEVKVIVLATMKGEFCR 109
Score = 33.4 bits (76), Expect = 0.11
Identities = 15/110 (13%), Positives = 25/110 (22%), Gaps = 20/110 (18%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDS------DKVVGNSPNLTLLMT 598
++ V+ G + L C + W+ + V + LL
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61
Query: 599 SDDL------------AGRYYCKASVMGFPEVGAEATVYLKGRPTIISHR 636
S + G Y C E V + R
Sbjct: 62 SANQLSITVPNVTLQDEGVYKC--LHYSDSVSTKEVKVIVLATMKGEFCR 109
Score = 31.1 bits (70), Expect = 0.63
Identities = 15/97 (15%), Positives = 30/97 (30%), Gaps = 13/97 (13%)
Query: 643 GDTARVECSAFSIPPPEKVTWSY-RGEEIGVG-----SSDDYSVLEDPLKEGIKSTLIIR 696
G T ++C + W G I + + Y +L + ++ +
Sbjct: 16 GQTLTLKCVTSLRKNS-SLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQL---SITVP 71
Query: 697 ESRHDHFGVYNCSV-SNPYGSDS--VEIMLKPQKSFP 730
GVY C S+ + V ++ + F
Sbjct: 72 NVTLQDEGVYKCLHYSDSVSTKEVKVIVLATMKGEFC 108
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 74.2 bits (182), Expect = 3e-15
Identities = 27/204 (13%), Positives = 55/204 (26%), Gaps = 41/204 (20%)
Query: 38 TAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSD---------EE 87
G V L C K+ W + S + +D ++
Sbjct: 6 LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 65
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTE 147
G++ L I + ++D Y C+V + + D ++QG +L
Sbjct: 66 GNFPLIIKNLKIEDSDTYICEVED-----QKEEVQLLVFGLTANSD-THLLQGQSL---- 115
Query: 148 DREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHH 207
L + + G + TL ++ +
Sbjct: 116 ----TLTL-ESPPGSSPSVQCRSPRGKNIQG----------------GKTLSVSQLELQD 154
Query: 208 NTTFTCQAQNTADRTYKVARLKLL 231
+ T+TC + + +L
Sbjct: 155 SGTWTCTVLQNQKKVEFKIDIVVL 178
Score = 65.0 bits (158), Expect = 4e-12
Identities = 23/187 (12%), Positives = 50/187 (26%), Gaps = 49/187 (26%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVK------ 369
+G V L C A S +++ W ++Q + L + +
Sbjct: 8 KKGDTVELTCTASQKKS-IQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQG 66
Query: 370 ------------------CEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLL 411
CEV + + + +T + +G + L
Sbjct: 67 NFPLIIKNLKIEDSDTYICEVEDQKEEVQ-LLVFGLTANS-------DTHLLQGQSLTLT 118
Query: 412 CDVDGNPAPEITWIHEDSDKVVGNSPNLTLL-MTSDDLAGRYYCKAS------------- 457
+ +P + + G L++ + D +G + C
Sbjct: 119 LESPPGSSPSVQCRSPRGKNIQGGK-TLSVSQLELQD-SGTWTCTVLQNQKKVEFKIDIV 176
Query: 458 VMGFPEV 464
V+ F +
Sbjct: 177 VLAFQKA 183
Score = 64.6 bits (157), Expect = 5e-12
Identities = 29/206 (14%), Positives = 53/206 (25%), Gaps = 56/206 (27%)
Query: 553 SVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGN----------------------- 589
V +G V L C + + W + + K++GN
Sbjct: 4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLW 63
Query: 590 -SPNLTL----LMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGD 644
N L L D + Y C+ + V L + T + G
Sbjct: 64 DQGNFPLIIKNLKIED--SDTYICEVE-------DQKEEVQLLVFGLTANSDTHL-LQGQ 113
Query: 645 TARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFG 704
+ + + P V S ++ TL + + G
Sbjct: 114 SLTLTLESPPGSSPS-VQCR----------SPRGKNIQG------GKTLSVSQLELQDSG 156
Query: 705 VYNCSVSNPYGSDSVEIMLKPQKSFP 730
+ C+V +I + +F
Sbjct: 157 TWTCTVLQNQKKVEFKIDIVVL-AFQ 181
Score = 61.5 bits (149), Expect = 6e-11
Identities = 26/234 (11%), Positives = 60/234 (25%), Gaps = 68/234 (29%)
Query: 399 SVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASV 458
V +G V L C + + W + + K++GN G + K
Sbjct: 4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQ-------------GSFLTKGPS 50
Query: 459 MGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGV 518
+ +++ +G +I + D+ C
Sbjct: 51 KLNDRADSRRSLWDQGNFPLIIKNLK---IEDSDTYICEV-------------------- 87
Query: 519 GSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW 578
+ + + +T + +G + L + +P +
Sbjct: 88 --------EDQKEEVQ-LLVFGLTANS-------DTHLLQGQSLTLTLESPPGSSPSVQC 131
Query: 579 IHEDSDKVVGNSPNLTLL-MTSDDLAGRYYCKAS-------------VMGFPEV 618
+ G L++ + D +G + C V+ F +
Sbjct: 132 RSPRGKNIQGGK-TLSVSQLELQD-SGTWTCTVLQNQKKVEFKIDIVVLAFQKA 183
Score = 51.5 bits (123), Expect = 1e-07
Identities = 23/194 (11%), Positives = 59/194 (30%), Gaps = 40/194 (20%)
Query: 141 DTLYTTEDREIELECISANGKPPAEITWIDG--------TGTVMSNVRVTEEASVDGRRT 192
+ + +EL C +A+ K + W + G+ ++ D RR+
Sbjct: 3 KVVLGKKGDTVELTC-TASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRS 61
Query: 193 TVKS---TLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLV 249
L++ K + T+ C+ ++ + +V L + + +
Sbjct: 62 LWDQGNFPLIIKNLKIEDSDTYICEVED---QKEEVQLLVFGLTANSDTHL--------L 110
Query: 250 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDS---------- 299
+G + L ++ + L ++ + DS
Sbjct: 111 QGQSLTLTLESPPGS-SPSVQCRSPRGKNIQGGK--TLSVSQLEL--QDSGTWTCTVLQN 165
Query: 300 --IVKCEVQVSVIG 311
V+ ++ + V+
Sbjct: 166 QKKVEFKIDIVVLA 179
Score = 48.4 bits (115), Expect = 2e-06
Identities = 22/175 (12%), Positives = 45/175 (25%), Gaps = 41/175 (23%)
Query: 249 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVK------ 302
+G V L C A S +++ W ++Q + L + +
Sbjct: 8 KKGDTVELTCTASQKKS-IQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQG 66
Query: 303 ------------------CEVQ------------VSVIGSNRLVEGTDVRLYCKAEANPS 332
CEV+ ++ L++G + L ++
Sbjct: 67 NFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGS- 125
Query: 333 HMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDV 387
+ L ++ + Q C V + K E + V
Sbjct: 126 SPSVQCRSPRGKNIQGGK--TLSVSQLEL-QDSGTWTCTVLQNQKKVEFKIDIVV 177
Score = 40.0 bits (93), Expect = 0.001
Identities = 13/106 (12%), Positives = 26/106 (24%), Gaps = 31/106 (29%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGD 89
D + G +TL +Q G + +G
Sbjct: 104 NSDTHLLQGQSLTLTLES---PPGSSPSVQCRSPR------------------GKNIQGG 142
Query: 90 YSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPP 135
+L + + L D + C V + + ++V
Sbjct: 143 KTLSVSQLELQDSGTWTCTVLQN------QKKVEFKIDIVVLAFQK 182
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 74.5 bits (183), Expect = 3e-15
Identities = 36/197 (18%), Positives = 64/197 (32%), Gaps = 37/197 (18%)
Query: 559 GAGVNLLCDV-DGNPAPEITWIH-----EDSDKVV----GNSPNLTLLMTSDDLAGRYYC 608
G+ L V ++ W H SD+V G L + + + G+Y
Sbjct: 17 AEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVM 76
Query: 609 KAS-------------VMGFPEVGAE------ATVYLKGRPTIISH--RTQFGIPGDTAR 647
+ + E AE A + K R ++ G
Sbjct: 77 ELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALN 136
Query: 648 VECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYN 707
+ C+ + PPPE V+W + + +D ++ + G + I G Y
Sbjct: 137 LTCNVWGDPPPE-VSWLKNEKALA--QTDHCNLKFE---AGRTAYFTINGVSTADSGKYG 190
Query: 708 CSVSNPYGSDSVEIMLK 724
V N YGS++ + +
Sbjct: 191 LVVKNKYGSETSDFTVS 207
Score = 64.9 bits (158), Expect = 7e-12
Identities = 27/225 (12%), Positives = 62/225 (27%), Gaps = 40/225 (17%)
Query: 31 AMEPQD-QTAVVGSRVTLPCRVIDKTGVLQ--WTKDDFALGPHRNLSGFDRYAMIGSDEE 87
A+ D + + L V L+ W+ + A+ DR +
Sbjct: 5 ALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYS------DRVKTGVTG-- 56
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD-------------- 133
L+I +D +Y ++ G + L+ +
Sbjct: 57 EQIWLQINEPTPNDKGKYVMELFDGK-TG---HQKTVDLSGQAYDEAYAEFQRLKQAAIA 112
Query: 134 ---PPRIVQG--DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVD 188
R++ G D + E + + L C + G PP E++W+ + +
Sbjct: 113 EKNRARVLGGLPDVVTIQEGKALNLTC-NVWGDPPPEVSWLKNEKALAQTDHCNLKFEAG 171
Query: 189 GRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVK 233
+ + + + +N + + +
Sbjct: 172 R-----TAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 211
Score = 61.8 bits (150), Expect = 9e-11
Identities = 30/197 (15%), Positives = 62/197 (31%), Gaps = 53/197 (26%)
Query: 311 GSNRLVEGTDVRLYCKAEANPSH---------MKYRWYINDQPVPAA------ASATELY 355
GS+ + TD+++ AE + +K W N + + + +++
Sbjct: 1 GSSIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIW 60
Query: 356 LTNITR-HQHDS-IVKCEVHNDVGKSEDSETLDV---------------------TYGPR 392
L I +D E+ + + + L
Sbjct: 61 LQ-INEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARV 119
Query: 393 FRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDL---- 448
P V + G +NL C+V G+P PE++W+ +K + + + L +
Sbjct: 120 LGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKN--EKALAQTDHCNLKFEAGRTAYFT 177
Query: 449 --------AGRYYCKAS 457
+G+Y
Sbjct: 178 INGVSTADSGKYGLVVK 194
Score = 56.8 bits (137), Expect = 4e-09
Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 7/100 (7%)
Query: 628 GRPTIISHRT-QFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLK 686
G +S + + ++ KV WS+ G I SD
Sbjct: 1 GSSIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIR--YSDRVKTGVT--- 55
Query: 687 EGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726
G + L I E + G Y + + + L Q
Sbjct: 56 -GEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQ 94
Score = 55.6 bits (134), Expect = 1e-08
Identities = 21/106 (19%), Positives = 32/106 (30%), Gaps = 18/106 (16%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAMIGSD 85
P T G + L C V G + W K++ AL D + +
Sbjct: 120 LGGLPDVVTIQEGKALNLTCNV---WGDPPPEVSWLKNEKALAQT------DHCNLK-FE 169
Query: 86 EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVP 131
I V D +Y V G + T++V +P
Sbjct: 170 AGRTAYFTINGVSTADSGKYGLVV-KNKYGS---ETSDFTVSVFIP 211
Score = 53.3 bits (128), Expect = 5e-08
Identities = 22/164 (13%), Positives = 46/164 (28%), Gaps = 28/164 (17%)
Query: 136 RIVQGDTLYTTEDRE-IELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRRTT 193
+ L E I+L ++ W +G+ + + RV V G
Sbjct: 4 IALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGS-AIRYSDRVK--TGVTGE--- 57
Query: 194 VKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLK------------------LLVKYA 235
+ L + + + + + K L + K
Sbjct: 58 -QIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNR 116
Query: 236 PKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVP 279
+V + + EG + L C +P + W N++ +
Sbjct: 117 ARVLGGLPDVVTIQEGKALNLTCNVWGDP-PPEVSWLKNEKALA 159
Score = 49.1 bits (117), Expect = 2e-06
Identities = 28/160 (17%), Positives = 53/160 (33%), Gaps = 34/160 (21%)
Query: 405 GAGVNLLCDV-DGNPAPEITWIH-----EDSDKVV----GNSPNLTLLMTSDDLAGRYYC 454
G+ L V ++ W H SD+V G L + + + G+Y
Sbjct: 17 AEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVM 76
Query: 455 KAS-------------VMGFPEVGAE------ATVYLKGRPTIISH--RTQFGIPGDTAR 493
+ + E AE A + K R ++ G
Sbjct: 77 ELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALN 136
Query: 494 VECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKS 533
+ C+ + PPPE V+W + + +D ++ + G++
Sbjct: 137 LTCNVWGDPPPE-VSWLKNEKAL--AQTDHCNLKFEAGRT 173
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 74.9 bits (184), Expect = 3e-15
Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 12/121 (9%)
Query: 604 GRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTW 663
Y +S + V + +Y P + + G+ + C F+ P ++W
Sbjct: 1 ATYAAASSAL----VPRGSHMY---APKLQGPVAVYTWEGNQVNITCEVFAYPSA-TISW 52
Query: 664 SYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723
G+ + + + + S L + + FG YNC+ N G +S+E +L
Sbjct: 53 FRDGQLLPSSNYSNIKIYNT----PSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFIL 108
Query: 724 K 724
Sbjct: 109 V 109
Score = 64.8 bits (158), Expect = 9e-12
Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 11/111 (9%)
Query: 33 EPQDQTAVVGSRVTLPCRVI-DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYS 91
P G++V + C V + + W +D L S + + +
Sbjct: 24 GPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPS----SNYSNIKIYNTP--SASY 77
Query: 92 LEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDT 142
LE+ P +D Y C +G+ S L P P I Q +
Sbjct: 78 LEVTPDSENDFGNYNCTAVN-RIGQ---ESLEFILVQADTPSSPSIDQVEP 124
Score = 50.2 bits (120), Expect = 6e-07
Identities = 37/201 (18%), Positives = 59/201 (29%), Gaps = 47/201 (23%)
Query: 384 TLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPN----- 438
Y P+ + P +V G VN+ C+V P+ I+W + N N
Sbjct: 13 RGSHMYAPKLQG-PVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYN 71
Query: 439 ------LTLLMTSDDLAGRYYCKASVMGFPEVG-AEATVYLK-----GRPTII------- 479
L + S++ G Y C A +G L P+I
Sbjct: 72 TPSASYLEVTPDSENDFGNYNCTAVN----RIGQESLEFILVQADTPSSPSIDQVEPYSS 127
Query: 480 SHRTQFGIPGDTARVECSAFSI--PPPEKVTWSYRGEEIGVGSSD------------DYS 525
+ + QF P T V + + W + + S + Y+
Sbjct: 128 TAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYA 187
Query: 526 V----HNDVGKSEDSETLDVT 542
V N G E S +
Sbjct: 188 VRLAALNGKGLGEISAASEFK 208
Score = 48.3 bits (115), Expect = 3e-06
Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 9/126 (7%)
Query: 124 ATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVT 182
A + P++ +YT E ++ + C P A I+W DG + +
Sbjct: 9 ALVPRGSHMYAPKLQGPVAVYTWEGNQVNITC-EVFAYPSATISWFRDG-----QLLPSS 62
Query: 183 EEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAP--KVQV 240
+++ T S L +TP E+ + C A N + L + QV
Sbjct: 63 NYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSIDQV 122
Query: 241 SVIGSN 246
S
Sbjct: 123 EPYSST 128
Score = 47.5 bits (113), Expect = 5e-06
Identities = 22/102 (21%), Positives = 34/102 (33%), Gaps = 17/102 (16%)
Query: 538 TLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPN----- 592
Y P+ + P +V G VN+ C+V P+ I+W + N N
Sbjct: 13 RGSHMYAPKLQG-PVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYN 71
Query: 593 ------LTLLMTSDDLAGRYYCKASVMGFPEVG-AEATVYLK 627
L + S++ G Y C A +G L
Sbjct: 72 TPSASYLEVTPDSENDFGNYNCTAVN----RIGQESLEFILV 109
Score = 36.7 bits (85), Expect = 0.022
Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 17/100 (17%)
Query: 315 LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPA----------AASATELYLTNITRHQH 364
EG V + C+ A PS W+ + Q +P+ SA+ L +T + +
Sbjct: 30 TWEGNQVNITCEVFAYPS-ATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSE--N 86
Query: 365 DS-IVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVD 403
D C N +G+ L P + P QV+
Sbjct: 87 DFGNYNCTAVNRIGQESLEFILVQADTP---SSPSIDQVE 123
Score = 35.6 bits (82), Expect = 0.049
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 215 AQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYIN 274
A A + V R YAPK+Q V + EG V + C+ A PS W+ +
Sbjct: 1 ATYAAASSALVPRGS--HMYAPKLQGPV--AVYTWEGNQVNITCEVFAYPS-ATISWFRD 55
Query: 275 DQPVP 279
Q +P
Sbjct: 56 GQLLP 60
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 73.4 bits (180), Expect = 5e-15
Identities = 29/206 (14%), Positives = 55/206 (26%), Gaps = 41/206 (19%)
Query: 33 EPQDQTAVVGSRVTLPCRVI---DKTGVLQWTK--DDFALGPHRN----LSGFDRYAMIG 83
+ +G + L D ++W K D + R D Y +
Sbjct: 5 NALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFK 64
Query: 84 SDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTL 143
+ +L+I + DD Y+ + G+ + F L + P+I
Sbjct: 65 -----NGTLKIKHLKTDDQDIYKVSIYD-TKGKNVLEKIF-DLKIQERVSKPKI------ 111
Query: 144 YTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPK 203
+ L C E+ DG+ + ++
Sbjct: 112 -SWTCINTTLTC-EVMNGTDPELNL-----------------YQDGKHLKLSQRVITHKW 152
Query: 204 KEHHNTTFTCQAQNTADRTYKVARLK 229
+ F C A N + V +
Sbjct: 153 TTSLSAKFKCTAGNKVSKESSVEPVS 178
Score = 55.7 bits (134), Expect = 6e-09
Identities = 30/201 (14%), Positives = 48/201 (23%), Gaps = 54/201 (26%)
Query: 554 VQVDRGAGVNLLCD--VDGNPAPEITWIHEDSDKVVGN----------------SPNLTL 595
G +NL + +I W K + N TL
Sbjct: 9 TWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTL 68
Query: 596 LM---TSDDLAGRYYCKASVMGFPEVGAEATVYLK-----GRPTIISHRTQFGIPGDTAR 647
+ +DD Y V E LK +P I
Sbjct: 69 KIKHLKTDD-QDIYKVSIYDTKGKNV-LEKIFDLKIQERVSKPKIS-------WTCINTT 119
Query: 648 VECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYN 707
+ C + PE + G+ LK +I + +
Sbjct: 120 LTCEVMNGTDPE-LNLYQDGK---------------HLKLS--QRVITHKWTTSLSAKFK 161
Query: 708 CSVSNPYGSDSVEIMLK-PQK 727
C+ N +S + P+K
Sbjct: 162 CTAGNKVSKESSVEPVSCPEK 182
Score = 55.3 bits (133), Expect = 1e-08
Identities = 14/142 (9%), Positives = 36/142 (25%), Gaps = 11/142 (7%)
Query: 142 TLYTTEDREIELEC-ISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRRTTVKS--T 197
+ ++I L+ +I W ++ R +E + + T
Sbjct: 8 ETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGT 67
Query: 198 LVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLY 257
L + K + +T + L ++ + L
Sbjct: 68 LKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKIS------WTCINTTLT 121
Query: 258 CKAEANPSHMKYRWYINDQPVP 279
C+ + Y + + +
Sbjct: 122 CEVMNGTD-PELNLYQDGKHLK 142
Score = 53.7 bits (129), Expect = 3e-08
Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 6/104 (5%)
Query: 354 LYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCD 413
L + ++ I K +++ GK+ + D+ R +P + L C+
Sbjct: 68 LKIKHLKT-DDQDIYKVSIYDTKGKNVLEKIFDLKIQERVS-KP-KISWT-CINTTLTCE 123
Query: 414 VDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS 457
V PE+ + K + S + + L+ ++ C A
Sbjct: 124 VMNGTDPELNLYQD--GKHLKLSQRVITHKWTTSLSAKFKCTAG 165
Score = 45.3 bits (107), Expect = 2e-05
Identities = 12/85 (14%), Positives = 23/85 (27%), Gaps = 5/85 (5%)
Query: 304 EVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQ 363
++Q V + L C+ + Y + + + + + T
Sbjct: 101 KIQERVSKPKISWTCINTTLTCEVMNGTD-PELNLYQDGKHLK---LSQRVITHKWTTSL 156
Query: 364 HDSIVKCEVHNDVGKSEDSETLDVT 388
KC N V K E +
Sbjct: 157 SAKF-KCTAGNKVSKESSVEPVSCP 180
Score = 44.9 bits (106), Expect = 3e-05
Identities = 27/182 (14%), Positives = 42/182 (23%), Gaps = 49/182 (26%)
Query: 400 VQVDRGAGVNLLCD--VDGNPAPEITWIHEDSDKVVGN----------------SPNLTL 441
G +NL + +I W K + N TL
Sbjct: 9 TWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTL 68
Query: 442 LM---TSDDLAGRYYCKASVMGFPEVGAEATVYLK-----GRPTIISHRTQFGIPGDTAR 493
+ +DD Y V E LK +P I
Sbjct: 69 KIKHLKTDD-QDIYKVSIYDTKGKNV-LEKIFDLKIQERVSKPKIS-------WTCINTT 119
Query: 494 VECSAFSIPPPEKVTWSYRGEEIGVGS-----------SDDYS--VHNDVGKSEDSETLD 540
+ C + PE + G+ + + S + N V K E +
Sbjct: 120 LTCEVMNGTDPE-LNLYQDGKHLKLSQRVITHKWTTSLSAKFKCTAGNKVSKESSVEPVS 178
Query: 541 VT 542
Sbjct: 179 CP 180
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 75.3 bits (184), Expect = 5e-15
Identities = 34/243 (13%), Positives = 58/243 (23%), Gaps = 44/243 (18%)
Query: 33 EPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS---- 84
+ G V LPC + W K + G + G
Sbjct: 8 THTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVE 67
Query: 85 -----------------DEEGDYSLEIYPVMLDDDARYQCQVST-GILGEPAIRSRFATL 126
+L + V D RY CQV+ I E + ++ L
Sbjct: 68 SDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVL 127
Query: 127 TVLVPPDPPRIVQ--GDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEE 184
V + + + E +I + C A +TW G + T +
Sbjct: 128 KVTGHTPSNNVHVSTAEVVQVDEGNDITMTC-PCTDCANANVTWYTGPTFFENYETGTYQ 186
Query: 185 ASVDGRRTTVKS---------------TLVLTPKKEHHNTTFTCQAQNTADRTYKVARLK 229
+ + + LV+ K C+
Sbjct: 187 PLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSST 246
Query: 230 LLV 232
+L
Sbjct: 247 ILK 249
Score = 63.0 bits (152), Expect = 5e-11
Identities = 44/267 (16%), Positives = 69/267 (25%), Gaps = 67/267 (25%)
Query: 397 PYSVQVDRGAGVNLLCDVD---GNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYY 453
V+V G V L C P I+W+ S + L G
Sbjct: 9 HTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGL-GFVE 67
Query: 454 CKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRG 513
+ F + A+V PT+ P D R C
Sbjct: 68 SDSYKESFGDFLGRASVANLAAPTLRLTHVH---PQDGGRYWCQVA-------------- 110
Query: 514 EEIGVGSSDDYSVHNDVGKSEDSETLDVTYG----PRFRARPYSVQVDRGAGVNLLCDVD 569
+S+ + G S L VT + VQVD G + + C
Sbjct: 111 ---------QWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCT 161
Query: 570 GNPAPEITWIHEDSDKVVGN----------------------------SPNLTLLMTS-- 599
+TW + S L++ +
Sbjct: 162 DCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAK 221
Query: 600 -DDLAGRYYCKA-SVMGFPEVGAEATV 624
D AGR +C+ + G + +T+
Sbjct: 222 ITD-AGRVWCELATGQGELDADRSSTI 247
Score = 63.0 bits (152), Expect = 6e-11
Identities = 32/238 (13%), Positives = 52/238 (21%), Gaps = 66/238 (27%)
Query: 551 PYSVQVDRGAGVNLLCDVD---GNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDL----- 602
V+V G V L C P I+W+ S + L
Sbjct: 9 HTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVES 68
Query: 603 ---------------------------------AGRYYCKAS------VMGFPEVGAEAT 623
GRY+C+ + G
Sbjct: 69 DSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLK 128
Query: 624 VYLKGRPTII---SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSV 680
V + + G+ + C VTW + Y
Sbjct: 129 VTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANAN-VTWYTGPTFFENYETGTYQP 187
Query: 681 LEDPLKEGIKS---------------TLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723
L + + GI L+IR ++ G C ++ G +
Sbjct: 188 LANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSS 245
Score = 50.7 bits (120), Expect = 6e-07
Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 18/115 (15%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRVIDK-TGVLQWTKDDFAL-----GPHRNLSGFDRYAMIG 83
+ G+ +T+ C D + W G ++ L+ +++ +
Sbjct: 139 HVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITW 198
Query: 84 SDEE--------GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLV 130
E G +L I + D R C+++TG GE + T+L
Sbjct: 199 FSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQ-GEL---DADRSSTILK 249
Score = 50.7 bits (120), Expect = 7e-07
Identities = 39/277 (14%), Positives = 73/277 (26%), Gaps = 76/277 (27%)
Query: 238 VQVSVIGSNRLV-EGTDVRLYCKAEANPSH--MKYRWYINDQPVPAAASATELYLTNITR 294
+ V + V G V L C + W P
Sbjct: 3 MTVRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPD---------------- 46
Query: 295 HQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATEL 354
+ + + + + ++++ + ++ V A+ T L
Sbjct: 47 -----------RSTKVFKGNYNWQGEGLGFVESDSYKES--FGDFLGRASVANLAAPT-L 92
Query: 355 YLTNITRHQHDSIVKCEVHN-----DVGKSEDSETLDVTYG----PRFRARPYSVQVDRG 405
LT++ Q C+V + G S L VT + VQVD G
Sbjct: 93 RLTHVHP-QDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEG 151
Query: 406 AGVNLLCDVDGNPAPEITWIHEDSDKVVGN----------------------------SP 437
+ + C +TW + S
Sbjct: 152 NDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSG 211
Query: 438 NLTLLMTS---DDLAGRYYCKA-SVMGFPEVGAEATV 470
L++ + D AGR +C+ + G + +T+
Sbjct: 212 ARNLVIRAAKITD-AGRVWCELATGQGELDADRSSTI 247
Score = 50.3 bits (119), Expect = 1e-06
Identities = 43/223 (19%), Positives = 62/223 (27%), Gaps = 41/223 (18%)
Query: 126 LTVLVPPDPPRIVQGDTLYTTEDREIELEC--ISANGKPPAEITWI-------------- 169
+TV + G T +EL C AN P I+W+
Sbjct: 3 MTVRTTHTEVEVHAGGT--------VELPCSYQLANDTQPPVISWLKGASPDRSTKVFKG 54
Query: 170 ------DGTGTVMSNVRVTEEASVDGRRTTVKS---TLVLTPKKEHHNTTFTCQAQNTAD 220
+G G V S+ GR + TL LT + CQ +
Sbjct: 55 NYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSI 114
Query: 221 RT-----YKVARLKLLVKYAPKVQVSVIGSNRLV-EGTDVRLYCKAEANPSHMKYRWYIN 274
RT K LK+ V EG D+ + C + WY
Sbjct: 115 RTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCAN-ANVTWYTG 173
Query: 275 DQPVPAAASATELYLTNITRHQHDSIV-KCEVQVSVIGSNRLV 316
+ T L N + + + S G+ LV
Sbjct: 174 PTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLV 216
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 77.7 bits (190), Expect = 8e-15
Identities = 71/574 (12%), Positives = 142/574 (24%), Gaps = 122/574 (21%)
Query: 34 PQDQTAVVGSRVTLPCRV----IDKTGVLQWTKDDFAL--------GPHRNLSGFDRYAM 81
P++ +V G+ V++ C +++ W + + + R +
Sbjct: 7 PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANL 66
Query: 82 IGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGD 141
E G + + I + DD RY+C + R +++ V P +
Sbjct: 67 TNFPENGTFVVNIAQLSQDDSGRYKCGLGIN------SRGLSFDVSLEVSQGPGLLNDTK 120
Query: 142 TLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTE--EASVDGRRTTVKS--- 196
R + + C + G V + R +
Sbjct: 121 VYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGT 180
Query: 197 -----TLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVE- 250
++V+ + + CQA + ++ K A L++L V + GS
Sbjct: 181 GQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCA 240
Query: 251 -----GTDVRLYCKAEANPSHMKYRWYINDQPVPA-----------AASATELYLTNITR 294
+ C+ + + + PA + + +T + +
Sbjct: 241 LGPEVANVAKFLCRQSSGENC-DVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRK 299
Query: 295 ------------------HQHDSIVKCEVQVSVIGSN-----RLVEGTDVRLYCKAEANP 331
+ V + V G+ V + C
Sbjct: 300 EDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKE 359
Query: 332 SHMKYRWYINDQPVPAAASAT--------------------------ELYLTNITRHQHD 365
S W + + + L +T D
Sbjct: 360 SKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTS--RD 417
Query: 366 S-IVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVD----GNPAP 420
+ C + D E + P + +V G + + C
Sbjct: 418 AGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPG-NVTAVLGETLKVPCHFPCKFSSYEKY 476
Query: 421 EITWIHEDSDKVVG--------------NSPNLTLLMTS---DDLAGRYYCKASVMGFPE 463
W + + NS ++L + D G Y+C F
Sbjct: 477 WCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRAD-EGWYWCGVKQGHFYG 535
Query: 464 VGAEATVYLKGRPTIISHRTQFGIPGDTARVECS 497
A V ++ R S D A E
Sbjct: 536 ETAAVYVAVEERKAAGSRDVS-LAKADAAPDEKV 568
Score = 76.2 bits (186), Expect = 2e-14
Identities = 58/503 (11%), Positives = 118/503 (23%), Gaps = 100/503 (19%)
Query: 317 EGTDVRLYCKAEANPSH-MKYRWYINDQP----VPAAASATELYLTNITRHQHDSIVK-- 369
G V + C + + K + + ++ Y I +
Sbjct: 126 LGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLF 185
Query: 370 ----------------CEVHNDVGKSEDSETLDVTYGPRFRARPY---------SVQVDR 404
C+ +D ++ + L V ++ +
Sbjct: 186 SVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEV 245
Query: 405 GAGVNLLCDVDGNPAPEITWIHEDSDKVVGNS----------PNLTLLMTS---DDLAGR 451
LC ++ + ++++T +D AGR
Sbjct: 246 ANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKED-AGR 304
Query: 452 YYCKASVMGFPEVGAEATVYLK----GRPTIISHRTQFGIPGDTARVECSAFSIPPPEKV 507
Y C A G + G+ + S G+ G + V C
Sbjct: 305 YLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIK 364
Query: 508 TWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCD 567
W V + S+ + G G +
Sbjct: 365 YWCLWEGAQNGRCPLLVDSEGWVKAQYEGR--------------LSLLEEPGNGTFTV-- 408
Query: 568 VDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLK 627
L L + D AG Y+C + ++
Sbjct: 409 ------------------------ILNQLTSRD--AGFYWCLTNGDTLWRT-TVEIKIIE 441
Query: 628 GRPTIISHRTQFGIPGDTARVECSAFSIPPPEK---VTWSYRGEEIGVGSSDDYS-VLED 683
G P + + G+T +V C + W+ G + + S +
Sbjct: 442 GEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVN 501
Query: 684 PLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD---SVEIMLKPQKSFPLLLILTGVIG 740
+ +L + G Y C V + +V + ++ +K+ +
Sbjct: 502 CDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDVSLAKAD 561
Query: 741 CVVILVALTMVVILCQRKVKKPP 763
L + K + P
Sbjct: 562 AAPDEKVLDSGFREIENKAIQDP 584
Score = 71.2 bits (173), Expect = 9e-13
Identities = 52/423 (12%), Positives = 101/423 (23%), Gaps = 90/423 (21%)
Query: 381 DSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLT 440
+S ++ Y P R R C + ++ + + N T
Sbjct: 16 NSVSITCYYPPTSVNRHTRKYWCRQGARGG-CITLISSEGYVSSKYAGRANLTNFPENGT 74
Query: 441 LLMTSDDL----AGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVEC 496
++ L +GRY C + + +G + + G T + C
Sbjct: 75 FVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINC 134
Query: 497 SAFSIPPPEKVTWSYRGEEI-------------------------------------GVG 519
+ K Y+ + +
Sbjct: 135 PFKTENAQ-KRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLR 193
Query: 520 SSD--DYS--VHNDVGKSEDSETLDVTYGPRFRARPY---------SVQVDRGAGVNLLC 566
SD Y +D ++ + L V ++ + LC
Sbjct: 194 LSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLC 253
Query: 567 DVDGNPAPEITWIHEDSDKVVGNS----------PNLTLLMTS---DDLAGRYYCKASVM 613
++ + ++++T +D AGRY C A
Sbjct: 254 RQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKED-AGRYLCGAHSD 312
Query: 614 GFPEVGAEATVYLK----GRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWS----- 664
G + G+ + S G+ G + V C W
Sbjct: 313 GQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGA 372
Query: 665 ---------YRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYG 715
+ S+LE+P T+I+ + G Y C +
Sbjct: 373 QNGRCPLLVDSEGWVKAQYEGRLSLLEEP--GNGTFTVILNQLTSRDAGFYWCLTNGDTL 430
Query: 716 SDS 718
+
Sbjct: 431 WRT 433
Score = 53.5 bits (127), Expect = 2e-07
Identities = 29/261 (11%), Positives = 67/261 (25%), Gaps = 27/261 (10%)
Query: 27 EQKFAMEPQDQTAVVGSRVTLPCRV--IDKTGVLQWTKDDFAL----------GPHRNLS 74
E P V GS V + C + + W + A
Sbjct: 331 ESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQ 390
Query: 75 GFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDP 134
R +++ G +++ + + D Y C + T+ + +
Sbjct: 391 YEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDT-------LWRTTVEIKIIEGE 443
Query: 135 PRIVQGDTLYTTEDREIELECISANGKPPAEITWI----DGTGTVMSNVRVTEEASVDGR 190
P + + +++ C E W G + S +A V+
Sbjct: 444 PNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCD 503
Query: 191 RTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVE 250
+ +L L + C + A + + V+ + L +
Sbjct: 504 ENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAA-VYVAVEERK---AAGSRDVSLAK 559
Query: 251 GTDVRLYCKAEANPSHMKYRW 271
++ ++ +
Sbjct: 560 ADAAPDEKVLDSGFREIENKA 580
Score = 52.3 bits (124), Expect = 7e-07
Identities = 34/251 (13%), Positives = 69/251 (27%), Gaps = 25/251 (9%)
Query: 535 DSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLT 594
+S ++ Y P R R C + ++ + + N T
Sbjct: 16 NSVSITCYYPPTSVNRHTRKYWCRQGARGG-CITLISSEGYVSSKYAGRANLTNFPENGT 74
Query: 595 LLMTSDDL----AGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVEC 650
++ L +GRY C + + +G + + G T + C
Sbjct: 75 FVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINC 134
Query: 651 SAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKS-----------TLIIRESR 699
+ K Y+ + D S +P G +++I + R
Sbjct: 135 PFKTENAQ-KRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLR 193
Query: 700 HDHFGVYNCSVSNPYGSDSVEIMLKPQKSFPLLLILTGVIG------CVVILVALTMVVI 753
G Y C + S+ Q P ++ + C + +
Sbjct: 194 LSDAGQYLCQAGDDSNSNKKNA--DLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKF 251
Query: 754 LCQRKVKKPPP 764
LC++ +
Sbjct: 252 LCRQSSGENCD 262
Score = 45.8 bits (107), Expect = 8e-05
Identities = 25/157 (15%), Positives = 46/157 (29%), Gaps = 13/157 (8%)
Query: 18 SMGSLAQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTG-----VLQWTKDDFALGPHRN 72
+ + + P + TAV+G + +PC K +W P ++
Sbjct: 433 TTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQD 492
Query: 73 LSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP 132
+ + + SL + V D+ Y C V G A + V V
Sbjct: 493 EGP-SKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFY-----GETAAVYVAVEE 546
Query: 133 DPPRIVQGDTLYTTEDREIELECISANGKPPAEITWI 169
+ + + E + +G E I
Sbjct: 547 RKAAGSRDVS--LAKADAAPDEKVLDSGFREIENKAI 581
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 74.9 bits (183), Expect = 8e-15
Identities = 37/264 (14%), Positives = 74/264 (28%), Gaps = 48/264 (18%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGF-------- 76
+ VG V + C V + W + +
Sbjct: 7 GLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPT 66
Query: 77 ----DRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP 132
+R ++G D SL + V D+ Y C++ + + + V P
Sbjct: 67 GRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRL----KNESMVMKKPVELWVLP 122
Query: 133 DPPRIVQGDTLYTTEDREIELECI--SANGKPPAEITWIDGTGT---------------- 174
+ PR ++ ++ C S K ++ W+ +G+
Sbjct: 123 EEPRDLR-----VRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRS 177
Query: 175 --VMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLV 232
S R + G + ++ L KE +TC + K L ++
Sbjct: 178 GKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQ 237
Query: 233 KYAPKVQVSVIGSNRLVEGTDVRL 256
Q ++ + +G L
Sbjct: 238 DEF---QRTISPTPPTDKGQQGIL 258
Score = 67.2 bits (163), Expect = 3e-12
Identities = 36/243 (14%), Positives = 65/243 (26%), Gaps = 57/243 (23%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDV---DGNPAPEITWIHEDSDKVVGN------------ 589
P ++V G V + C V + + W+
Sbjct: 6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVP 65
Query: 590 ---------------SPNLTLL---MTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPT 631
+ +LL + D G Y C+ + V + V L P
Sbjct: 66 TGRFQNRSHLVGDTFHNDGSLLLQDVQKAD-EGIYTCEIRLKNESMV-MKKPVELWVLPE 123
Query: 632 IISHRTQFGIPGDTARVECSAFSIPPPE--KVTWSYRG-----EEIGVGSSDDYSVLEDP 684
R GDT ++ CS S KV W + EE + + +
Sbjct: 124 E--PRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQ 181
Query: 685 LKEGIKS-------------TLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFPL 731
++ ++ ++ + G+Y CS+ I+L +
Sbjct: 182 SLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQ 241
Query: 732 LLI 734
I
Sbjct: 242 RTI 244
Score = 48.7 bits (115), Expect = 4e-06
Identities = 30/192 (15%), Positives = 50/192 (26%), Gaps = 42/192 (21%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDV---DGNPAPEITWIHEDSDKVVGN------------ 435
P ++V G V + C V + + W+
Sbjct: 6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVP 65
Query: 436 ---------------SPNLTLL---MTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPT 477
+ +LL + D G Y C+ + V + V L P
Sbjct: 66 TGRFQNRSHLVGDTFHNDGSLLLQDVQKAD-EGIYTCEIRLKNESMV-MKKPVELWVLPE 123
Query: 478 IISHRTQFGIPGDTARVECSAFSIPPPE--KVTWSYRGEEIGVGSSDDYSVHNDVGKSED 535
R GDT ++ CS S KV W + G + ++ + D
Sbjct: 124 E--PRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSS---GSHTEEETVLSYDSNMRSG 178
Query: 536 SETLDVTYGPRF 547
+ R
Sbjct: 179 KFQSLGRFRNRV 190
Score = 31.8 bits (71), Expect = 1.0
Identities = 19/162 (11%), Positives = 41/162 (25%), Gaps = 46/162 (28%)
Query: 370 CEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWI---- 425
CE+ + +++ P P ++V G + C + +T +
Sbjct: 101 CEIRLKNESMVMKKPVELWVLPEE---PRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMF 157
Query: 426 ----HEDSDKVVGNSPNLTLLMTSDDL----------------------------AGRYY 453
H + + V+ N+ G Y
Sbjct: 158 SSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYT 217
Query: 454 CKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVE 495
C V ++ + T+ L ++ Q I +
Sbjct: 218 CSIYV---GKLESRKTIVL----HVVQDEFQRTISPTPPTDK 252
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 68.9 bits (169), Expect = 2e-14
Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 16/107 (14%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEG 88
+F +D + G TL C + ++W + L P D+Y++ E
Sbjct: 10 RFQEALKDLEVLEGGAATLRCVLSSVAAPVKWCYGNNVLRPG------DKYSL--RQEGA 61
Query: 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPP 135
L + + D RY C ++ ATLTV P P
Sbjct: 62 MLELVVRNLRPQDSGRYSCSFGD--------QTTSATLTVTALPSGP 100
Score = 45.0 bits (107), Expect = 5e-06
Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 15/99 (15%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVV----GNSPNLTL 441
RF+ ++V G L C + AP + W + + DK G L +
Sbjct: 9 VRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVV 67
Query: 442 LMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIIS 480
+GRY C + AT+ + P+ S
Sbjct: 68 RNLRPQDSGRYSCSFG-----DQTTSATLTVTALPSGPS 101
Score = 45.0 bits (107), Expect = 5e-06
Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 15/99 (15%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVV----GNSPNLTL 595
RF+ ++V G L C + AP + W + + DK G L +
Sbjct: 9 VRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVV 67
Query: 596 LMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIIS 634
+GRY C + AT+ + P+ S
Sbjct: 68 RNLRPQDSGRYSCSFG-----DQTTSATLTVTALPSGPS 101
Score = 44.6 bits (106), Expect = 7e-06
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
G A + C S+ P V W Y + D YS+ ++ G L++R R
Sbjct: 23 GGAATLRCVLSSVAAP--VKWCYGNNVLR--PGDKYSLRQE----GAMLELVVRNLRPQD 74
Query: 703 FGVYNCSVSN 712
G Y+CS +
Sbjct: 75 SGRYSCSFGD 84
Score = 30.0 bits (68), Expect = 1.0
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 489 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHND 529
G A + C S+ P V W Y + D YS+ +
Sbjct: 23 GGAATLRCVLSSVAAP--VKWCYGNNVL--RPGDKYSLRQE 59
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 68.9 bits (169), Expect = 3e-14
Identities = 28/111 (25%), Positives = 35/111 (31%), Gaps = 17/111 (15%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
F M+ + G VT CRV G + W KD + P + I
Sbjct: 10 FFEMKLKHYKIFEGMPVTFTCRV---AGNPKPKIYWFKDGKQISPK------SDHYTIQR 60
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPP 135
D +G SL LDDD Y + G S L V P
Sbjct: 61 DLDGTCSLHTTASTLDDDGNYTIMAAN-PQGR---ISCTGRLMVQAVNSGP 107
Score = 50.4 bits (121), Expect = 1e-07
Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 14/99 (14%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVV-----GNSPNL 439
P F + ++ G V C V GNP P+I W I SD + +L
Sbjct: 9 PFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSL 68
Query: 440 TLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPT 477
++ D G Y A+ G + + ++ +
Sbjct: 69 HTTASTLDDDGNYTIMAANPQG--RISCTGRLMVQAVNS 105
Score = 50.4 bits (121), Expect = 1e-07
Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 14/99 (14%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVV-----GNSPNL 593
P F + ++ G V C V GNP P+I W I SD + +L
Sbjct: 9 PFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSL 68
Query: 594 TLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPT 631
++ D G Y A+ G + + ++ +
Sbjct: 69 HTTASTLDDDGNYTIMAANPQG--RISCTGRLMVQAVNS 105
Score = 49.7 bits (119), Expect = 1e-07
Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 5/81 (6%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
G C P P K+ W G++I SD Y++ D +G +L S D
Sbjct: 23 GMPVTFTCRVAGNPKP-KIYWFKDGKQI-SPKSDHYTIQRDL--DGT-CSLHTTASTLDD 77
Query: 703 FGVYNCSVSNPYGSDSVEIML 723
G Y +NP G S L
Sbjct: 78 DGNYTIMAANPQGRISCTGRL 98
Score = 32.7 bits (75), Expect = 0.13
Identities = 13/84 (15%), Positives = 24/84 (28%), Gaps = 10/84 (11%)
Query: 314 RLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQ--------HD 365
++ EG V C+ NP K W+ + + + + + D
Sbjct: 19 KIFEGMPVTFTCRVAGNPK-PKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDD 77
Query: 366 S-IVKCEVHNDVGKSEDSETLDVT 388
N G+ + L V
Sbjct: 78 DGNYTIMAANPQGRISCTGRLMVQ 101
Score = 32.7 bits (75), Expect = 0.14
Identities = 20/100 (20%), Positives = 28/100 (28%), Gaps = 8/100 (8%)
Query: 131 PPDPPRIVQG-DTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVD 188
P E + C G P +I W DG + T + +D
Sbjct: 5 SSGAPFFEMKLKHYKIFEGMPVTFTC-RVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLD 63
Query: 189 GRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARL 228
G +L T + +T A N R RL
Sbjct: 64 GT-----CSLHTTASTLDDDGNYTIMAANPQGRISCTGRL 98
Score = 29.2 bits (66), Expect = 1.9
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 247 RLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPA 280
++ EG V C+ NP K W+ + + +
Sbjct: 19 KIFEGMPVTFTCRVAGNPK-PKIYWFKDGKQISP 51
Score = 29.2 bits (66), Expect = 2.3
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 489 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHND 529
G C P P K+ W G++I SD Y++ D
Sbjct: 23 GMPVTFTCRVAGNPKP-KIYWFKDGKQI-SPKSDHYTIQRD 61
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 68.9 bits (169), Expect = 3e-14
Identities = 29/111 (26%), Positives = 39/111 (35%), Gaps = 18/111 (16%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
F P D T G + C+V +G+ L W D + P D +
Sbjct: 11 HFLQAPGDLTVQEGKLCRMDCKV---SGLPTPDLSWQLDGKPVRP-------DSAHKMLV 60
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPP 135
E G +SL I PV D Y C ++T G+ S L V P
Sbjct: 61 RENGVHSLIIEPVTSRDAGIYTC-IATNRAGQ---NSFSLELVVAAKESGP 107
Score = 52.4 bits (126), Expect = 2e-08
Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 15/102 (14%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSD-KVVGNSPNLTLLM 443
P F P + V G + C V G P P+++W + DS K++ + L+
Sbjct: 10 PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLI 69
Query: 444 ----TSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIIS 480
TS D AG Y C A+ G + + + + + S
Sbjct: 70 IEPVTSRD-AGIYTCIATNRAG--QNSFSLELVVAAKESGPS 108
Score = 52.4 bits (126), Expect = 2e-08
Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 15/102 (14%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSD-KVVGNSPNLTLLM 597
P F P + V G + C V G P P+++W + DS K++ + L+
Sbjct: 10 PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLI 69
Query: 598 ----TSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIIS 634
TS D AG Y C A+ G + + + + + S
Sbjct: 70 IEPVTSRD-AGIYTCIATNRAG--QNSFSLELVVAAKESGPS 108
Score = 52.0 bits (125), Expect = 3e-08
Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 7/97 (7%)
Query: 629 RPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKE 687
RP + G R++C +P P+ ++W G+ + + +L E
Sbjct: 9 RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPD-LSWQLDGKPVR--PDSAHKMLVR---E 62
Query: 688 GIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
+LII G+Y C +N G +S + L
Sbjct: 63 NGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELV 99
Score = 39.7 bits (93), Expect = 6e-04
Identities = 19/104 (18%), Positives = 36/104 (34%), Gaps = 7/104 (6%)
Query: 134 PPRIVQG-DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRT 192
P +Q L E + ++C +G P +++W V + +G
Sbjct: 9 RPHFLQAPGDLTVQEGKLCRMDC-KVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGV-- 65
Query: 193 TVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAP 236
+L++ P +TC A N A + L + K +
Sbjct: 66 ---HSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESG 106
Score = 36.2 bits (84), Expect = 0.009
Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 13/84 (15%)
Query: 314 RLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAAS---------ATELYLTNITRHQH 364
+ EG R+ CK P+ W ++ +PV ++ L + +T
Sbjct: 20 TVQEGKLCRMDCKVSGLPTP-DLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTS--R 76
Query: 365 DS-IVKCEVHNDVGKSEDSETLDV 387
D+ I C N G++ S L V
Sbjct: 77 DAGIYTCIATNRAGQNSFSLELVV 100
Score = 30.4 bits (69), Expect = 0.83
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 247 RLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA 282
+ EG R+ CK P+ W ++ +PV +
Sbjct: 20 TVQEGKLCRMDCKVSGLPTP-DLSWQLDGKPVRPDS 54
Score = 28.9 bits (65), Expect = 3.1
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 475 RPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEI 516
RP + G R++C +P P+ ++W G+ +
Sbjct: 9 RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPD-LSWQLDGKPV 50
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 71.6 bits (175), Expect = 3e-14
Identities = 32/199 (16%), Positives = 63/199 (31%), Gaps = 31/199 (15%)
Query: 34 PQDQTAVVGSRVTLPCRV--IDKTGVLQWTKDDFAL-------GPHRNLSGFDRYAMIGS 84
P ++G VTLP +K + W ++ +L + +
Sbjct: 5 PLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRL 64
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLY 144
+ YSL++ + ++D Y+ Q+ST + S TL +L ++ L+
Sbjct: 65 NFTQSYSLQLSNLKMEDTGSYRAQISTK--TSAKLSSY--TLRILRQLRNIQVTNHSQLF 120
Query: 145 TTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPK- 203
E+ L C + W G + + L ++
Sbjct: 121 QNMTCELHLTCSVEDADDNVSFRW-----------------EALGNTLSSQPNLTVSWDP 163
Query: 204 KEHHNTTFTCQAQNTADRT 222
+ +TC A+N
Sbjct: 164 RISSEQDYTCIAENAVSNL 182
Score = 52.3 bits (125), Expect = 1e-07
Identities = 25/203 (12%), Positives = 49/203 (24%), Gaps = 45/203 (22%)
Query: 551 PYSVQVDRGAGVNLLCDVD-GNPAPEITWIHEDSDKVVGN-------------------- 589
P V G V L + G ITW+ ++
Sbjct: 5 PLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRL 64
Query: 590 --SPNLTLL---MTSDDLAGRYYCKASVMGFPEVGA--EATVYLKGRPTIISHRTQFGIP 642
+ + +L + +D G Y + S ++ + + + +H F
Sbjct: 65 NFTQSYSLQLSNLKMED-TGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNM 123
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
+ CS W G + + + + R
Sbjct: 124 TCELHLTCSVEDADDNVSFRWEALGNTLSSQPN----------------LTVSWDPRISS 167
Query: 703 FGVYNCSVSNPYGSDSVEIMLKP 725
Y C N + S + +
Sbjct: 168 EQDYTCIAENAVSNLSFSVSAQK 190
Score = 48.8 bits (116), Expect = 1e-06
Identities = 27/181 (14%), Positives = 53/181 (29%), Gaps = 18/181 (9%)
Query: 135 PRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVM---------SNVRVTEEA 185
P +V G + L G+ ITW+ ++ + VT
Sbjct: 5 PLMVNG-----ILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPK 59
Query: 186 SVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGS 245
T +L L+ K ++ Q L +++ +QV+
Sbjct: 60 QGKRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTL-RILRQLRNIQVTNHSQ 118
Query: 246 NRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEV 305
++ L C E ++ +RW + S L ++ R + C
Sbjct: 119 LFQNMTCELHLTCSVEDADDNVSFRWEALGNTLS---SQPNLTVSWDPRISSEQDYTCIA 175
Query: 306 Q 306
+
Sbjct: 176 E 176
Score = 41.5 bits (97), Expect = 4e-04
Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 5/85 (5%)
Query: 304 EVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQ 363
+QV+ ++ L C E ++ +RW + S L ++ R
Sbjct: 110 NIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLS---SQPNLTVSWDPRIS 166
Query: 364 HDSIVKCEVHNDVGKSEDSETLDVT 388
+ C N V S S ++
Sbjct: 167 SEQDYTCIAENAV--SNLSFSVSAQ 189
Score = 38.8 bits (90), Expect = 0.003
Identities = 25/169 (14%), Positives = 44/169 (26%), Gaps = 30/169 (17%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATE---------------------- 353
+ G V L + A W N+ +
Sbjct: 11 ILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSY 70
Query: 354 -LYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPR--FRARPYSVQVDRGAGVNL 410
L L+N+ + + ++ S TL + R + + ++L
Sbjct: 71 SLQLSNLKM-EDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHL 129
Query: 411 LCDV-DGNPAPEITWIHEDSDKVVGNSPNLTL-LMTSDDLAGRYYCKAS 457
C V D + W + + PNLT+ Y C A
Sbjct: 130 TCSVEDADDNVSFRWEA--LGNTLSSQPNLTVSWDPRISSEQDYTCIAE 176
Score = 37.7 bits (87), Expect = 0.008
Identities = 20/153 (13%), Positives = 39/153 (25%), Gaps = 29/153 (18%)
Query: 397 PYSVQVDRGAGVNLLCDVD-GNPAPEITWIHEDSDKVVGN-------------------- 435
P V G V L + G ITW+ ++
Sbjct: 5 PLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRL 64
Query: 436 --SPNLTLL---MTSDDLAGRYYCKASVMGFPEVGA--EATVYLKGRPTIISHRTQFGIP 488
+ + +L + +D G Y + S ++ + + + +H F
Sbjct: 65 NFTQSYSLQLSNLKMED-TGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNM 123
Query: 489 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSS 521
+ CS W G + +
Sbjct: 124 TCELHLTCSVEDADDNVSFRWEALGNTLSSQPN 156
Score = 31.9 bits (72), Expect = 0.68
Identities = 14/121 (11%), Positives = 38/121 (31%), Gaps = 14/121 (11%)
Query: 640 GIPGDTARVECSAFSIPPPEKVTWSYRGEEIGV----GSSDDYSVLEDPLKEGIKS---- 691
GI G++ + + +TW + + + + +P + +
Sbjct: 10 GILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQS 69
Query: 692 -TLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFPLLLI-----LTGVIGCVVIL 745
+L + + + G Y +S + L+ + + + L + C + L
Sbjct: 70 YSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHL 129
Query: 746 V 746
Sbjct: 130 T 130
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 70.9 bits (173), Expect = 5e-14
Identities = 23/190 (12%), Positives = 48/190 (25%), Gaps = 29/190 (15%)
Query: 32 MEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGD-- 89
++P+ G + L C P G + + G
Sbjct: 7 LQPRVAFVERGGSLWLNCSTN---------------CPRPERGGLETSLRRNGTQRGLRW 51
Query: 90 YSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDR 149
+ ++ + + + + C + PD ++
Sbjct: 52 LARQLVDI-REPETQPVCFFRCA----RRTLQARGLIRTFQRPDRVELMPLPPWQP-VGE 105
Query: 150 EIELECISANGKPPA--EITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHH 207
L C P A +T + G + E T + ++E H
Sbjct: 106 NFTLSCRVPGAGPRASLTLTLLRG-AQELIRRSFAGEPPRARGAV---LTATVLARREDH 161
Query: 208 NTTFTCQAQN 217
F+C+A+
Sbjct: 162 GANFSCRAEL 171
Score = 63.9 bits (155), Expect = 1e-11
Identities = 22/178 (12%), Positives = 43/178 (24%), Gaps = 7/178 (3%)
Query: 548 RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSD--DLAGR 605
+P V+RG + L C + D + +
Sbjct: 6 DLQPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGLRWLARQLVDIREPETQ 65
Query: 606 YYCKASVMGFP-EVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWS 664
C + + + + + G+ + C P +T +
Sbjct: 66 PVCFFRCARRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLT 125
Query: 665 -YRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEI 721
RG + E P G T + R DH ++C + +
Sbjct: 126 LLRGAQE---LIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDLRPHGLGL 180
Score = 50.8 bits (121), Expect = 4e-07
Identities = 14/127 (11%), Positives = 30/127 (23%), Gaps = 4/127 (3%)
Query: 394 RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSD--DLAGR 451
+P V+RG + L C + D + +
Sbjct: 6 DLQPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGLRWLARQLVDIREPETQ 65
Query: 452 YYCKASVMGFP-EVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWS 510
C + + + + + G+ + C P +T +
Sbjct: 66 PVCFFRCARRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLT 125
Query: 511 -YRGEEI 516
RG +
Sbjct: 126 LLRGAQE 132
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 67.7 bits (166), Expect = 6e-14
Identities = 25/107 (23%), Positives = 37/107 (34%), Gaps = 14/107 (13%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEG 88
+ +D TA G RV L C V + ++W K+ + P RY + E
Sbjct: 9 MVTKQLEDTTAYCGERVELECEVSEDDANVKWFKNGEEIIPGPK----SRYRI--RVEGK 62
Query: 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPP 135
+ L I D A Y + G A L+V + P
Sbjct: 63 KHILIIEGATKADAAEYSVMTTGG--------QSSAKLSVDLKSGPS 101
Score = 50.0 bits (120), Expect = 9e-08
Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 6/70 (8%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
G+ +EC S V W GEEI G Y + + G K LII +
Sbjct: 22 GERVELECEV-SEDDAN-VKWFKNGEEIIPGPKSRYRIRVE----GKKHILIIEGATKAD 75
Query: 703 FGVYNCSVSN 712
Y+ +
Sbjct: 76 AAEYSVMTTG 85
Score = 38.1 bits (89), Expect = 0.002
Identities = 10/81 (12%), Positives = 18/81 (22%), Gaps = 16/81 (19%)
Query: 390 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDL- 448
G + G V L C+V + W + + P + +
Sbjct: 7 GIMVTKQLEDTTAYCGERVELECEVS-EDDANVKWFKN--GEEIIPGPKSRYRIRVEGKK 63
Query: 449 ------------AGRYYCKAS 457
A Y +
Sbjct: 64 HILIIEGATKADAAEYSVMTT 84
Score = 38.1 bits (89), Expect = 0.002
Identities = 10/81 (12%), Positives = 18/81 (22%), Gaps = 16/81 (19%)
Query: 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDL- 602
G + G V L C+V + W + + P + +
Sbjct: 7 GIMVTKQLEDTTAYCGERVELECEVS-EDDANVKWFKN--GEEIIPGPKSRYRIRVEGKK 63
Query: 603 ------------AGRYYCKAS 611
A Y +
Sbjct: 64 HILIIEGATKADAAEYSVMTT 84
Score = 33.1 bits (76), Expect = 0.095
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 489 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHND 529
G+ +EC S V W GEEI G Y + +
Sbjct: 22 GERVELECEV-SEDDAN-VKWFKNGEEIIPGPKSRYRIRVE 60
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 70.4 bits (172), Expect = 7e-14
Identities = 32/206 (15%), Positives = 60/206 (29%), Gaps = 32/206 (15%)
Query: 38 TAVVGSRVTLPCRVIDKTG----VLQWTKD--------------DFALGPHRNLSGFDRY 79
TA +G RVTL + + W K D FD +
Sbjct: 2 TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIH 61
Query: 80 AMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQ 139
+ L + + D Y C++ G ++ L+V+ P V
Sbjct: 62 -----RSANTFFLVVTAANISHDGNYLCRMKLG----ETEVTKQEHLSVVKPLTL--SVH 110
Query: 140 GDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLV 199
+ + + + C + N P + W+ G + + + S V
Sbjct: 111 SERSQFPDFSVLTVTC-TVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSL--SVAV 167
Query: 200 LTPKKEHHNTTFTCQAQNTADRTYKV 225
+ + TC +N + + V
Sbjct: 168 DLSLPKPWHLPVTCVGKNDKEEAHGV 193
Score = 68.5 bits (167), Expect = 4e-13
Identities = 33/187 (17%), Positives = 56/187 (29%), Gaps = 16/187 (8%)
Query: 536 SETLDVTYGPR-----FRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNS 590
S V+ GP F+ P QV G ++ P IH N+
Sbjct: 13 SYWRRVSLGPEIEVSWFKLGPGEEQVLIGR-MHHDVIFIEWPFRGFFDIHRS-----ANT 66
Query: 591 PNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVE 649
L + + G Y C+ +G EV + + + T+ H V
Sbjct: 67 FFLVVTAANISHDGNYLCRMK-LGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVT 125
Query: 650 CSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCS 709
C+ + P P V W ++ + V+++ +G S + C
Sbjct: 126 CTVNAFPHP-HVQWLMPEGVEPAPTAANGGVMKEK--DGSLSVAVDLSLPKPWHLPVTCV 182
Query: 710 VSNPYGS 716
N
Sbjct: 183 GKNDKEE 189
Score = 64.7 bits (157), Expect = 7e-12
Identities = 20/160 (12%), Positives = 40/160 (25%), Gaps = 23/160 (14%)
Query: 312 SNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCE 371
V + P + + + A+ L +T HD C
Sbjct: 34 GEEQVLIGRMHHDVIFIEWPFRGFFDIHRS-------ANTFFLVVTAANI-SHDGNYLCR 85
Query: 372 VHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED--- 428
+ + E L V Q + + + C V+ P P + W+ +
Sbjct: 86 MKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVE 145
Query: 429 -----SDKVVGNSPNLTLLM------TSDDLAGRYYCKAS 457
++ V + +L + C
Sbjct: 146 PAPTAANGGVMKEKDGSLSVAVDLSLPKPW-HLPVTCVGK 184
Score = 57.3 bits (138), Expect = 2e-09
Identities = 29/156 (18%), Positives = 47/156 (30%), Gaps = 16/156 (10%)
Query: 382 SETLDVTYGPR-----FRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNS 436
S V+ GP F+ P QV G ++ P IH N+
Sbjct: 13 SYWRRVSLGPEIEVSWFKLGPGEEQVLIGR-MHHDVIFIEWPFRGFFDIHRS-----ANT 66
Query: 437 PNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVE 495
L + + G Y C+ +G EV + + + T+ H V
Sbjct: 67 FFLVVTAANISHDGNYLCRMK-LGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVT 125
Query: 496 CSAFSIPPPEKVTWSYRGEEIGVGSSDD--YSVHND 529
C+ + P P V W ++ + D
Sbjct: 126 CTVNAFPHP-HVQWLMPEGVEPAPTAANGGVMKEKD 160
Score = 54.7 bits (131), Expect = 2e-08
Identities = 12/101 (11%), Positives = 26/101 (25%), Gaps = 15/101 (14%)
Query: 525 SVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-- 582
+ + E L V Q + + + C V+ P P + W+ +
Sbjct: 85 RMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGV 144
Query: 583 ------SDKVVGNSPNLTLLM------TSDDLAGRYYCKAS 611
++ V + +L + C
Sbjct: 145 EPAPTAANGGVMKEKDGSLSVAVDLSLPKPW-HLPVTCVGK 184
Score = 48.9 bits (116), Expect = 2e-06
Identities = 23/145 (15%), Positives = 46/145 (31%), Gaps = 17/145 (11%)
Query: 149 REIELECI--SANGKPPAEITWI--------DGTGTVMSNVRVTEE---ASVDGRRTTVK 195
+ L + P E++W G + +V E D R+
Sbjct: 7 ERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANT 66
Query: 196 STLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVR 255
LV+T H+ + C+ + K L ++ P ++ + + +
Sbjct: 67 FFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVK---PLTLSVHSERSQFPDFSVLT 123
Query: 256 LYCKAEANPSHMKYRWYINDQPVPA 280
+ C A P +W + + PA
Sbjct: 124 VTCTVNAFPHP-HVQWLMPEGVEPA 147
Score = 41.2 bits (96), Expect = 7e-04
Identities = 12/86 (13%), Positives = 22/86 (25%), Gaps = 17/86 (19%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
++ + S +T+ C V +QW + +G
Sbjct: 106 TLSVHSERSQFPDFSVLTVTCTV---NAFPHPHVQWLMPEGVEPAPTAANG--GVMK--- 157
Query: 85 DEEGDYSLEI---YPVMLDDDARYQC 107
E D SL + + C
Sbjct: 158 --EKDGSLSVAVDLSLPKPWHLPVTC 181
Score = 39.2 bits (91), Expect = 0.003
Identities = 13/95 (13%), Positives = 27/95 (28%), Gaps = 13/95 (13%)
Query: 643 GDTARVECSA--FSIPPPEKVTWSYRGEEI-----------GVGSSDDYSVLEDPLKEGI 689
G+ + S+ P +V+W G + + D +
Sbjct: 6 GERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSAN 65
Query: 690 KSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
L++ + H G Y C + + + L
Sbjct: 66 TFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLS 100
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 67.4 bits (165), Expect = 1e-13
Identities = 23/107 (21%), Positives = 38/107 (35%), Gaps = 17/107 (15%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEG 88
KF +++ A G+ L C + K ++W K L DR+++ +
Sbjct: 21 KFTEGLRNEEATEGATAVLRCEL-SKMAPVEWWKGHETLRDG------DRHSL--RQDGA 71
Query: 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPP 135
L+I ++ +D Y C A LTV P P
Sbjct: 72 RCELQIRGLVAEDAGEYLCMCGKE--------RTSAMLTVRAMPSGP 110
Score = 44.7 bits (106), Expect = 1e-05
Identities = 19/117 (16%), Positives = 34/117 (29%), Gaps = 17/117 (14%)
Query: 374 NDVGKSEDSETLDVT-YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED---- 428
+ S L V +F + + GA L C++ + W
Sbjct: 2 SSGSSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLR 59
Query: 429 -SDKVV----GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIIS 480
D+ G L + + AG Y C + A + ++ P+ S
Sbjct: 60 DGDRHSLRQDGARCELQIRGLVAEDAGEYLCMCG-----KERTSAMLTVRAMPSGPS 111
Score = 44.7 bits (106), Expect = 1e-05
Identities = 19/117 (16%), Positives = 34/117 (29%), Gaps = 17/117 (14%)
Query: 528 NDVGKSEDSETLDVT-YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED---- 582
+ S L V +F + + GA L C++ + W
Sbjct: 2 SSGSSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLR 59
Query: 583 -SDKVV----GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIIS 634
D+ G L + + AG Y C + A + ++ P+ S
Sbjct: 60 DGDRHSLRQDGARCELQIRGLVAEDAGEYLCMCG-----KERTSAMLTVRAMPSGPS 111
Score = 42.7 bits (101), Expect = 4e-05
Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 11/110 (10%)
Query: 620 AEATVYLKGRPTIISH--RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDD 677
A + ++ P + R + G TA + C + P V W E + D
Sbjct: 9 TSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKMAP---VEWWKGHETLR--DGDR 63
Query: 678 YSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQK 727
+S+ +D G + L IR + G Y C S + + P
Sbjct: 64 HSLRQD----GARCELQIRGLVAEDAGEYLCMCGKERTSAMLTVRAMPSG 109
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 66.7 bits (163), Expect = 2e-13
Identities = 20/109 (18%), Positives = 37/109 (33%), Gaps = 17/109 (15%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
F +PQ + + G V L C++ + + L W +++ + + +
Sbjct: 17 MFIYKPQSKKVLEGDSVKLECQI---SAIPPPKLFWKRNNEMVQFN------TDRISLYQ 67
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD 133
D G +L I V D Y + G + L V P+
Sbjct: 68 DNTGRVTLLIKDVNKKDAGWYTV-SAVNEAGV---TTCNTRLDVTARPN 112
Score = 60.5 bits (147), Expect = 3e-11
Identities = 26/117 (22%), Positives = 44/117 (37%), Gaps = 16/117 (13%)
Query: 376 VGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDS 429
+G + + P F +P S +V G V L C + P P++ W + ++
Sbjct: 1 MGHHHHHHSHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNT 60
Query: 430 DKV---VGNSPNLTLL---MTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTII 479
D++ N+ +TLL + D AG Y A G + + RP
Sbjct: 61 DRISLYQDNTGRVTLLIKDVNKKD-AGWYTVSAVNEAG--VTTCNTRLDVTARPNQT 114
Score = 60.5 bits (147), Expect = 3e-11
Identities = 26/117 (22%), Positives = 44/117 (37%), Gaps = 16/117 (13%)
Query: 530 VGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDS 583
+G + + P F +P S +V G V L C + P P++ W + ++
Sbjct: 1 MGHHHHHHSHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNT 60
Query: 584 DKV---VGNSPNLTLL---MTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTII 633
D++ N+ +TLL + D AG Y A G + + RP
Sbjct: 61 DRISLYQDNTGRVTLLIKDVNKKD-AGWYTVSAVNEAG--VTTCNTRLDVTARPNQT 114
Score = 57.0 bits (138), Expect = 6e-10
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 641 IPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRH 700
+ GD+ ++EC +IPPP K+ W E + ++D S+ +D + TL+I++
Sbjct: 28 LEGDSVKLECQISAIPPP-KLFWKRNNEMVQF-NTDRISLYQD---NTGRVTLLIKDVNK 82
Query: 701 DHFGVYNCSVSNPYGSDSVEIML----KPQKSFP 730
G Y S N G + L +P ++ P
Sbjct: 83 KDAGWYTVSAVNEAGVTTCNTRLDVTARPNQTLP 116
Score = 40.8 bits (96), Expect = 2e-04
Identities = 23/121 (19%), Positives = 39/121 (32%), Gaps = 17/121 (14%)
Query: 121 SRFATLTVLVPPD---PPRIVQGDTLYTTEDREIELECISANGKPPAEITWI-DGTGTVM 176
+ P P+ + E ++LEC + PP ++ W +
Sbjct: 5 HHHHSHEHKRAPMFIYKPQSKK-----VLEGDSVKLEC-QISAIPPPKLFWKRNNEMVQF 58
Query: 177 SNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAP 236
+ R++ GR TL++ + +T A N A T RL V P
Sbjct: 59 NTDRISLYQDNTGR-----VTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLD--VTARP 111
Query: 237 K 237
Sbjct: 112 N 112
Score = 37.0 bits (86), Expect = 0.005
Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 10/87 (11%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRH--------QHDS- 366
+EG V+L C+ A P K W N++ V LY N R + D+
Sbjct: 28 LEGDSVKLECQISAIPP-PKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAG 86
Query: 367 IVKCEVHNDVGKSEDSETLDVTYGPRF 393
N+ G + + LDVT P
Sbjct: 87 WYTVSAVNEAGVTTCNTRLDVTARPNQ 113
Score = 31.6 bits (72), Expect = 0.35
Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 27/87 (31%)
Query: 487 IPGDTARVECSAFSIPPPEKVTWSYRGEEI----------------------GVGSSDD- 523
+ GD+ ++EC +IPPP K+ W E + V D
Sbjct: 28 LEGDSVKLECQISAIPPP-KLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAG 86
Query: 524 -YSVH--NDVGKSEDSETLDVTYGPRF 547
Y+V N+ G + + LDVT P
Sbjct: 87 WYTVSAVNEAGVTTCNTRLDVTARPNQ 113
Score = 29.7 bits (67), Expect = 2.0
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 249 VEGTDVRLYCKAEANPSHMKYRWYINDQPVP 279
+EG V+L C+ A P K W N++ V
Sbjct: 28 LEGDSVKLECQISAIPP-PKLFWKRNNEMVQ 57
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 65.8 bits (161), Expect = 3e-13
Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 12/100 (12%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEG 88
+DQ VG RV + V ++ + W K+ L + RY +
Sbjct: 10 LIVTPLEDQQVFVGDRVEMAVEVSEEGAQVMWMKNGVELTREDSFKA--RYRF--KKDGK 65
Query: 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
+ L V+ +D RYQ + G A L V
Sbjct: 66 RHILIFSDVVQEDRGRYQVITNGG--------QCEAELIV 97
Score = 48.5 bits (116), Expect = 4e-07
Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 5/84 (5%)
Query: 630 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688
I++ Q GD + S + V W G E+ D + K+G
Sbjct: 9 VLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQ-VMWMKNGVELT--REDSFKARYRFKKDG 64
Query: 689 IKSTLIIRESRHDHFGVYNCSVSN 712
+ LI + + G Y +
Sbjct: 65 KRHILIFSDVVQEDRGRYQVITNG 88
Score = 37.7 bits (88), Expect = 0.002
Identities = 12/80 (15%), Positives = 20/80 (25%), Gaps = 14/80 (17%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSD-------KVVGNSP 437
QV G V + +V ++ W + + K G
Sbjct: 9 VLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRH 67
Query: 438 NLTLLMTSDDLAGRYYCKAS 457
L + GRY +
Sbjct: 68 ILIFSDVVQEDRGRYQVITN 87
Score = 37.7 bits (88), Expect = 0.002
Identities = 12/80 (15%), Positives = 20/80 (25%), Gaps = 14/80 (17%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSD-------KVVGNSP 591
QV G V + +V ++ W + + K G
Sbjct: 9 VLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRH 67
Query: 592 NLTLLMTSDDLAGRYYCKAS 611
L + GRY +
Sbjct: 68 ILIFSDVVQEDRGRYQVITN 87
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 66.5 bits (162), Expect = 3e-13
Identities = 29/117 (24%), Positives = 39/117 (33%), Gaps = 18/117 (15%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTGVL--QWTKDDFAL-----------GPHRNLSGFDRYA 80
+ VVG VTLPC G+ W + G RY
Sbjct: 4 YVEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYN 63
Query: 81 MIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDP-PR 136
+ G EGD SL I + D Y C+V + T ++ V P+ PR
Sbjct: 64 LKGHISEGDVSLTIENSVESDSGLYCCRVEIP----GWFNDQKVTFSLQVKPELVPR 116
Score = 29.5 bits (66), Expect = 2.1
Identities = 17/108 (15%), Positives = 32/108 (29%), Gaps = 21/108 (19%)
Query: 640 GIPGDTARVECSAFSIPPPEKVTW---------------SYRGEEIGVGSSDDYSVLEDP 684
G+ G + C+ + W G + S Y++
Sbjct: 9 GVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHI 68
Query: 685 LKEGIKSTLIIRESRHDHFGVYNCSVSNP----YGSDSVEIMLKPQKS 728
+ + +L I S G+Y C V P + + +KP+
Sbjct: 69 SEGDV--SLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQVKPELV 114
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 65.4 bits (160), Expect = 4e-13
Identities = 23/107 (21%), Positives = 32/107 (29%), Gaps = 16/107 (14%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEG 88
+DQ G V L C + + W KD A+ +Y ++ E
Sbjct: 10 AIIKPLEDQWVAPGEDVELRCELSRAGTPVHWLKDRKAIRKS------QKYDVV--CEGT 61
Query: 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPP 135
L I L D Y C+V A+L V P
Sbjct: 62 MAMLVIRGASLKDAGEYTCEVEAS-KST-------ASLHVEEKASGP 100
Score = 52.3 bits (126), Expect = 1e-08
Identities = 23/99 (23%), Positives = 35/99 (35%), Gaps = 9/99 (9%)
Query: 630 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688
II Q+ PG+ + C P V W + I S Y V+ + G
Sbjct: 9 AAIIKPLEDQWVAPGEDVELRCELSRAGTP--VHWLKDRKAIR--KSQKYDVVCE----G 60
Query: 689 IKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQK 727
+ L+IR + G Y C V + S+ + K
Sbjct: 61 TMAMLVIRGASLKDAGEYTCEVEASKSTASLHVEEKASG 99
Score = 42.3 bits (100), Expect = 6e-05
Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 15/96 (15%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVV----GNSPNLTL 441
V G V L C++ P + W+ + S K G L +
Sbjct: 9 AAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLVI 67
Query: 442 LMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPT 477
S AG Y C+ + A+++++ + +
Sbjct: 68 RGASLKDAGEYTCEVE-----ASKSTASLHVEEKAS 98
Score = 42.3 bits (100), Expect = 6e-05
Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 15/96 (15%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVV----GNSPNLTL 595
V G V L C++ P + W+ + S K G L +
Sbjct: 9 AAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLVI 67
Query: 596 LMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPT 631
S AG Y C+ + A+++++ + +
Sbjct: 68 RGASLKDAGEYTCEVE-----ASKSTASLHVEEKAS 98
Score = 30.0 bits (68), Expect = 0.96
Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 5/55 (9%)
Query: 476 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHND 529
II Q+ PG+ + C P V W + I S Y V +
Sbjct: 9 AAIIKPLEDQWVAPGEDVELRCELSRAGTP--VHWLKDRKAI--RKSQKYDVVCE 59
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 65.6 bits (160), Expect = 1e-12
Identities = 39/130 (30%), Positives = 46/130 (35%), Gaps = 22/130 (16%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
F D V GS C+V G + W KDD + R+ I
Sbjct: 43 YFTKTILDMEVVEGSAARFDCKV---EGYPDPEVMWFKDDNPVKE-------SRHFQIDY 92
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLY 144
DEEG+ SL I V DDDA+Y C + LGE A L V
Sbjct: 93 DEEGNCSLTISEVCGDDDAKYTC-KAVNSLGE--ATCT-AELLVETMGKEGEGEGE---- 144
Query: 145 TTEDREIELE 154
ED E E E
Sbjct: 145 GEEDEEEEEE 154
Score = 55.2 bits (133), Expect = 5e-09
Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 17/125 (13%)
Query: 367 IVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH 426
I +V N+ E+ P F ++V G+ C V+G P PE+ W
Sbjct: 18 INANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFK 77
Query: 427 EDSDKVVGNSPNLTLLMTSDDL------------AGRYYCKAS-VMGFPEVGAEATVYLK 473
+ D V S + + + +Y CKA +G E A + ++
Sbjct: 78 D--DNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLG--EATCTAELLVE 133
Query: 474 GRPTI 478
Sbjct: 134 TMGKE 138
Score = 54.5 bits (131), Expect = 8e-09
Identities = 27/130 (20%), Positives = 39/130 (30%), Gaps = 16/130 (12%)
Query: 603 AGRYYCKA-------SVMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFS 654
+G + F E AE ++K P + G AR +C
Sbjct: 10 SGSSPTSPINANKVENEDAFLEEVAEEKPHVK--PYFTKTILDMEVVEGSAARFDCKVEG 67
Query: 655 IPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPY 714
P P +V W + S + + D E +L I E D Y C N
Sbjct: 68 YPDP-EVMWFKDDNPVK--ESRHFQIDYD---EEGNCSLTISEVCGDDDAKYTCKAVNSL 121
Query: 715 GSDSVEIMLK 724
G + L
Sbjct: 122 GEATCTAELL 131
Score = 53.3 bits (128), Expect = 2e-08
Identities = 24/120 (20%), Positives = 40/120 (33%), Gaps = 17/120 (14%)
Query: 526 VHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDK 585
V N+ E+ P F ++V G+ C V+G P PE+ W + D
Sbjct: 23 VENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKD--DN 80
Query: 586 VVGNSPNLTLLMTSDDL------------AGRYYCKAS-VMGFPEVGAEATVYLKGRPTI 632
V S + + + +Y CKA +G E A + ++
Sbjct: 81 PVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLG--EATCTAELLVETMGKE 138
Score = 43.3 bits (102), Expect = 7e-05
Identities = 22/147 (14%), Positives = 41/147 (27%), Gaps = 16/147 (10%)
Query: 94 IYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD---PPRIVQGDTLYTTEDRE 150
+ + + + E A A V P + E
Sbjct: 4 MSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTIL-----DMEVVEGSA 58
Query: 151 IELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTT 210
+C G P E+ W V + + +G +L ++ +
Sbjct: 59 ARFDC-KVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGN-----CSLTISEVCGDDDAK 112
Query: 211 FTCQAQNTADRTYKVARLKLLVKYAPK 237
+TC+A N+ +LLV+ K
Sbjct: 113 YTCKAVNSLGEA--TCTAELLVETMGK 137
Score = 34.8 bits (80), Expect = 0.057
Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 13/100 (13%)
Query: 314 RLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA---------SATELYLTNITRHQH 364
+VEG+ R CK E P + W+ +D PV + L ++ +
Sbjct: 52 EVVEGSAARFDCKVEGYPD-PEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVC--GD 108
Query: 365 DS-IVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVD 403
D C+ N +G++ + L V + + D
Sbjct: 109 DDAKYTCKAVNSLGEATCTAELLVETMGKEGEGEGEGEED 148
Score = 32.5 bits (74), Expect = 0.31
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 212 TCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRW 271
+ +N +VA K V P I +VEG+ R CK E P + W
Sbjct: 20 ANKVENEDAFLEEVAEEKPHV--KPYF-TKTILDMEVVEGSAARFDCKVEGYPD-PEVMW 75
Query: 272 YINDQPVP 279
+ +D PV
Sbjct: 76 FKDDNPVK 83
Score = 31.0 bits (70), Expect = 0.98
Identities = 24/142 (16%), Positives = 39/142 (27%), Gaps = 36/142 (25%)
Query: 449 AGRYYCKA-------SVMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFS 500
+G + F E AE ++K P + G AR +C
Sbjct: 10 SGSSPTSPINANKVENEDAFLEEVAEEKPHVK--PYFTKTILDMEVVEGSAARFDCKVEG 67
Query: 501 IPPPEKVTWSYRGEEI---------------------GVGSSDD--YSV--HNDVGKSED 535
P P +V W + V DD Y+ N +G++
Sbjct: 68 YPDP-EVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATC 126
Query: 536 SETLDVTYGPRFRARPYSVQVD 557
+ L V + + D
Sbjct: 127 TAELLVETMGKEGEGEGEGEED 148
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 68.2 bits (166), Expect = 1e-12
Identities = 39/235 (16%), Positives = 74/235 (31%), Gaps = 34/235 (14%)
Query: 32 MEPQDQTAVVGSRVTLPCRVIDKTGV------LQWTKDDFALGPHRNLSGFDRYAMIGSD 85
M Q + VT+ C + + + W L + + F+ +
Sbjct: 8 MAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKS--LTFDKEVKVFEFFGDHQEA 65
Query: 86 ------------EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD 133
+ GD SL + + L++ Y+C+V P L V+ P
Sbjct: 66 FRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVT----PLKAQGTVQLEVVASPA 121
Query: 134 PPRIVQGDTLYTTEDREIELECISANGKPPA-EITWIDGTGTVMSNVRVTEEASVDGRRT 192
++ + ++ E + C S+ P A ITW T + ++E+
Sbjct: 122 SRLLLDQVGM---KENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIK 178
Query: 193 ------TVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVS 241
V S L L +E T + C ++ + T + L +
Sbjct: 179 NMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTAARHSLSETE 233
Score = 42.7 bits (100), Expect = 3e-04
Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 10/119 (8%)
Query: 603 AGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSA--FSIPPPEK 660
AG Y C+ V + + + P Q G+ + + C + F P
Sbjct: 94 AGEYRCEVVVTPL-KAQGTVQLEVVASPASRLLLDQVGMKENEDKYMCESSGFY-PEAIN 151
Query: 661 VTWSYRGEEIGVGSS-DDYSVLEDPLKEG-----IKSTLIIRESRHDHFGVYNCSVSNP 713
+TW + ++ + + +K + S L + S+ D VY C V +
Sbjct: 152 ITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHA 210
Score = 32.3 bits (73), Expect = 0.61
Identities = 18/110 (16%), Positives = 35/110 (31%), Gaps = 16/110 (14%)
Query: 631 TIISHRTQFGIPGDTARVECSAFSIPPPE----KVTW----SYRGEEIGV-----GSSDD 677
+++ TQ D + C+ F P +TW +E+ V +
Sbjct: 6 EMMAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEA 65
Query: 678 YSVLEDPLKEGIKS---TLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
+ +KS +L + + + G Y C V + L+
Sbjct: 66 FRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLE 115
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 64.0 bits (156), Expect = 1e-12
Identities = 17/103 (16%), Positives = 30/103 (29%), Gaps = 16/103 (15%)
Query: 33 EPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSL 92
+ T RV L C + W KD + + + + + L
Sbjct: 16 DKVSLTFTTSERVVLTCELSRVDFPATWYKDGQKVEES------ELLVV--KMDGRKHRL 67
Query: 93 EIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPP 135
+ + D ++C+ S F +TV P P
Sbjct: 68 ILPEAKVQDSGEFECRTEG--------VSAFFGVTVQDPSGPS 102
Score = 44.7 bits (106), Expect = 7e-06
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 8/71 (11%)
Query: 642 PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHD 701
+ + C S TW G+++ S+ V D G K LI+ E++
Sbjct: 24 TSERVVLTCEL-SRVDFP-ATWYKDGQKVE--ESELLVVKMD----GRKHRLILPEAKVQ 75
Query: 702 HFGVYNCSVSN 712
G + C
Sbjct: 76 DSGEFECRTEG 86
Score = 34.7 bits (80), Expect = 0.027
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 10/67 (14%)
Query: 399 SVQVDRGAGVNLLCDVDGNPAPEITWIH-----EDSDKVV----GNSPNLTLLMTSDDLA 449
S+ V L C++ TW E+S+ +V G L L +
Sbjct: 19 SLTFTTSERVVLTCELSR-VDFPATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDS 77
Query: 450 GRYYCKA 456
G + C+
Sbjct: 78 GEFECRT 84
Score = 34.7 bits (80), Expect = 0.027
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 10/67 (14%)
Query: 553 SVQVDRGAGVNLLCDVDGNPAPEITWIH-----EDSDKVV----GNSPNLTLLMTSDDLA 603
S+ V L C++ TW E+S+ +V G L L +
Sbjct: 19 SLTFTTSERVVLTCELSR-VDFPATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDS 77
Query: 604 GRYYCKA 610
G + C+
Sbjct: 78 GEFECRT 84
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 63.9 bits (156), Expect = 1e-12
Identities = 25/112 (22%), Positives = 41/112 (36%), Gaps = 19/112 (16%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEG 88
+F + + + A G+ TL C + K ++W K L RY++ +
Sbjct: 10 RFTQDLKTKEASEGATATLQCEL-SKVAPVEWKKGPETLRDG------GRYSL--KQDGT 60
Query: 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQG 140
L+I+ + + D Y C ATLTV P R +G
Sbjct: 61 RCELQIHDLSVADAGEYSCMCGQ--------ERTSATLTVRAL--PARFTEG 102
Score = 45.4 bits (108), Expect = 5e-06
Identities = 17/103 (16%), Positives = 31/103 (30%), Gaps = 16/103 (15%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVV----GNSPNLTL 441
RF + + GA L C++ + + W + G L +
Sbjct: 9 ARFTQDLKTKEASEGATATLQCEL--SKVAPVEWKKGPETLRDGGRYSLKQDGTRCELQI 66
Query: 442 LMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQ 484
S AG Y C + AT+ ++ P + +
Sbjct: 67 HDLSVADAGEYSCMCG-----QERTSATLTVRALPARFTEGSG 104
Score = 45.4 bits (108), Expect = 5e-06
Identities = 17/103 (16%), Positives = 31/103 (30%), Gaps = 16/103 (15%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVV----GNSPNLTL 595
RF + + GA L C++ + + W + G L +
Sbjct: 9 ARFTQDLKTKEASEGATATLQCEL--SKVAPVEWKKGPETLRDGGRYSLKQDGTRCELQI 66
Query: 596 LMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQ 638
S AG Y C + AT+ ++ P + +
Sbjct: 67 HDLSVADAGEYSCMCG-----QERTSATLTVRALPARFTEGSG 104
Score = 43.9 bits (104), Expect = 1e-05
Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 9/85 (10%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
G TA ++C + V W E + YS+ +D G + L I +
Sbjct: 23 GATATLQCE---LSKVAPVEWKKGPETLR--DGGRYSLKQD----GTRCELQIHDLSVAD 73
Query: 703 FGVYNCSVSNPYGSDSVEIMLKPQK 727
G Y+C S ++ + P +
Sbjct: 74 AGEYSCMCGQERTSATLTVRALPAR 98
Score = 28.1 bits (63), Expect = 4.7
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 5/41 (12%)
Query: 489 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHND 529
G TA ++C + V W E + YS+ D
Sbjct: 23 GATATLQCE---LSKVAPVEWKKGPETL--RDGGRYSLKQD 58
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 63.6 bits (155), Expect = 1e-12
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAG 450
+ P V G V L C+V P+P+I W+ + + SP L L G
Sbjct: 11 VQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQG 70
Query: 451 RYYCKAS-VMGFPEVGAEATV 470
Y C A+ P+ ++
Sbjct: 71 TYSCVATHSSHGPQESRAVSI 91
Score = 63.6 bits (155), Expect = 1e-12
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAG 604
+ P V G V L C+V P+P+I W+ + + SP L L G
Sbjct: 11 VQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQG 70
Query: 605 RYYCKAS-VMGFPEVGAEATV 624
Y C A+ P+ ++
Sbjct: 71 TYSCVATHSSHGPQESRAVSI 91
Score = 55.5 bits (134), Expect = 9e-10
Identities = 20/107 (18%), Positives = 32/107 (29%), Gaps = 26/107 (24%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
+ +EP+ G VTL C V + W KD L
Sbjct: 12 QLVVEPEGGAVAPGGTVTLTCEV---PAQPSPQIHWMKDGVPLPL--------------- 53
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVP 131
L + + D Y C + G SR +++++ P
Sbjct: 54 --PPSPVLILPEIGPQDQGTYSCVATHSSHGPQE--SRAVSISIIEP 96
Score = 47.8 bits (114), Expect = 6e-07
Identities = 17/102 (16%), Positives = 31/102 (30%), Gaps = 18/102 (17%)
Query: 619 GAEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDD 677
G+ + L ++ PG T + C + P P ++ W G + + S
Sbjct: 1 GSSGSSGL-EEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSP-QIHWMKDGVPLPLPPS-- 56
Query: 678 YSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSV 719
LI+ E G Y+C ++
Sbjct: 57 -------------PVLILPEIGPQDQGTYSCVATHSSHGPQE 85
Score = 42.8 bits (101), Expect = 3e-05
Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHND 375
G V L C+ A PS + W + P+P S L L I Q C +
Sbjct: 23 APGGTVTLTCEVPAQPS-PQIHWMKDGVPLPLPPSPV-LILPEIGP-QDQGTYSCVATHS 79
Query: 376 VGKSEDSETLDVT 388
++S + ++
Sbjct: 80 SHGPQESRAVSIS 92
Score = 35.8 bits (83), Expect = 0.009
Identities = 17/113 (15%), Positives = 37/113 (32%), Gaps = 26/113 (23%)
Query: 121 SRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNV 179
S + ++V P+ + G T + L C +P +I W+ DG +
Sbjct: 6 SGLEEVQLVVEPEGGAVAPGGT--------VTLTC-EVPAQPSPQIHWMKDGVPLPLPP- 55
Query: 180 RVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLV 232
L+L T++C A +++ + + + +
Sbjct: 56 ---------------SPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISI 93
Score = 34.7 bits (80), Expect = 0.020
Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 18/94 (19%)
Query: 465 GAEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSS-- 521
G+ + L ++ PG T + C + P P ++ W G + + S
Sbjct: 1 GSSGSSGL-EEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSP-QIHWMKDGVPLPLPPSPV 58
Query: 522 --------DD---YS--VHNDVGKSEDSETLDVT 542
D YS + ++S + ++
Sbjct: 59 LILPEIGPQDQGTYSCVATHSSHGPQESRAVSIS 92
Score = 33.2 bits (76), Expect = 0.075
Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 249 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITR 294
G V L C+ A PS + W + P+P S L L I
Sbjct: 23 APGGTVTLTCEVPAQPS-PQIHWMKDGVPLPLPPSPV-LILPEIGP 66
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 66.3 bits (161), Expect = 2e-12
Identities = 24/188 (12%), Positives = 47/188 (25%), Gaps = 26/188 (13%)
Query: 32 MEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYS 91
+ P+ + + C + G + +E
Sbjct: 7 VRPKKLAVEPKGSLEVNCSTT---------------CNQPEVGGLETSLNKILLDEQAQW 51
Query: 92 LEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREI 151
+ D QC + S + ++V PP + TL +
Sbjct: 52 KHYLVSNISHDTVLQCHFTCS----GKQESMNSNVSVYQPPRQVILTLQPTLVA-VGKSF 106
Query: 152 ELECISANGKPPA--EITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNT 209
+EC +P + G + + A +T T +E +
Sbjct: 107 TIECRVPTVEPLDSLTLFLFRG-NETLHYETFGKAAPAPQ---EATATFNSTADREDGHR 162
Query: 210 TFTCQAQN 217
F+C A
Sbjct: 163 NFSCLAVL 170
Score = 56.7 bits (136), Expect = 3e-09
Identities = 26/177 (14%), Positives = 54/177 (30%), Gaps = 6/177 (3%)
Query: 548 RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSD-DLAGRY 606
RP + V+ + + C N + ++ + S+
Sbjct: 6 HVRPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLNKILLDEQAQWKHYLVSNISHDTVL 65
Query: 607 YCKASVMGFP-EVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWS- 664
C + G + + +VY R I++ + G + +EC ++ P + +T
Sbjct: 66 QCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFL 125
Query: 665 YRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEI 721
+RG E + + +T R D ++C S I
Sbjct: 126 FRGNETLHYETFGKAAPAPQEAT---ATFNSTADREDGHRNFSCLAVLDLMSRGGNI 179
Score = 48.2 bits (114), Expect = 3e-06
Identities = 20/126 (15%), Positives = 43/126 (34%), Gaps = 3/126 (2%)
Query: 394 RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSD-DLAGRY 452
RP + V+ + + C N + ++ + S+
Sbjct: 6 HVRPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLNKILLDEQAQWKHYLVSNISHDTVL 65
Query: 453 YCKASVMGFP-EVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWS- 510
C + G + + +VY R I++ + G + +EC ++ P + +T
Sbjct: 66 QCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFL 125
Query: 511 YRGEEI 516
+RG E
Sbjct: 126 FRGNET 131
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 63.6 bits (155), Expect = 2e-12
Identities = 25/111 (22%), Positives = 38/111 (34%), Gaps = 18/111 (16%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEG 88
+ AV RV L C + ++WTKD + + E+
Sbjct: 15 VYPSGKVYVAAVRLERVVLTCELCRPWAEVRWTKDGEEVVES------PALLL--QKEDT 66
Query: 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQ 139
L + V L+D Y C++ S T+TV P P RI+
Sbjct: 67 VRRLVLPAVQLEDSGEYLCEIDD--------ESASFTVTVTEP--PVRIIY 107
Score = 45.1 bits (107), Expect = 6e-06
Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 8/70 (11%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
+ + C P E V W+ GEE+ S + KE L++ + +
Sbjct: 28 LERVVLTCEL-CRPWAE-VRWTKDGEEVV--ESPALLLQ----KEDTVRRLVLPAVQLED 79
Query: 703 FGVYNCSVSN 712
G Y C + +
Sbjct: 80 SGEYLCEIDD 89
Score = 41.7 bits (98), Expect = 1e-04
Identities = 23/115 (20%), Positives = 38/115 (33%), Gaps = 15/115 (13%)
Query: 379 SEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH-----EDSDKVV 433
S S DV+ + + V R V L C++ P E+ W +S ++
Sbjct: 2 SSGSSGTDVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALL 60
Query: 434 ----GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQ 484
L L + +G Y C+ + A TV + P I +
Sbjct: 61 LQKEDTVRRLVLPAVQLEDSGEYLCEID-----DESASFTVTVTEPPVRIIYSGP 110
Score = 41.7 bits (98), Expect = 1e-04
Identities = 23/115 (20%), Positives = 38/115 (33%), Gaps = 15/115 (13%)
Query: 533 SEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH-----EDSDKVV 587
S S DV+ + + V R V L C++ P E+ W +S ++
Sbjct: 2 SSGSSGTDVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALL 60
Query: 588 ----GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQ 638
L L + +G Y C+ + A TV + P I +
Sbjct: 61 LQKEDTVRRLVLPAVQLEDSGEYLCEID-----DESASFTVTVTEPPVRIIYSGP 110
Score = 30.5 bits (69), Expect = 0.80
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 489 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHND 529
+ + C P E V W+ GEE+ S + +
Sbjct: 28 LERVVLTCEL-CRPWAE-VRWTKDGEEV--VESPALLLQKE 64
Score = 30.5 bits (69), Expect = 0.98
Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 11/94 (11%)
Query: 124 ATLTVLVPPDPPRIVQGDT-LYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRV 181
+ + G + + L C +P AE+ W DG V+ + +
Sbjct: 3 SGSSGTDVSSWIVYPSGKVYVAAVRLERVVLTCEL--CRPWAEVRWTKDGE-EVVESPAL 59
Query: 182 TEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQA 215
+ LVL + + + C+
Sbjct: 60 --LLQKEDTV----RRLVLPAVQLEDSGEYLCEI 87
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 63.2 bits (154), Expect = 2e-12
Identities = 18/95 (18%), Positives = 28/95 (29%), Gaps = 4/95 (4%)
Query: 630 PTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGI 689
PTI + + + P P + W Y G + S + +
Sbjct: 5 PTIT--FLESPTSDHHWCIPFTVKGNPKPA-LQWFYNGAIL-NESKYICTKIHVTNHTEY 60
Query: 690 KSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
L + H + G Y N YG D +I
Sbjct: 61 HGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAH 95
Score = 42.8 bits (101), Expect = 4e-05
Identities = 17/105 (16%), Positives = 29/105 (27%), Gaps = 6/105 (5%)
Query: 134 PPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTT 193
P I T D + + G P + W G +++ + T
Sbjct: 4 APTITF--LESPTSDHHWCIPF-TVKGNPKPALQWFYN-GAILNESKYICTKIHVTNHTE 59
Query: 194 VKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKV 238
L L +N +T A+N + K P +
Sbjct: 60 YHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAH--FMGWPGI 102
Score = 42.8 bits (101), Expect = 4e-05
Identities = 17/108 (15%), Positives = 30/108 (27%), Gaps = 22/108 (20%)
Query: 387 VTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDS------------DKVVG 434
V + P + + V GNP P + W + +
Sbjct: 1 VHFAPTIT---FLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNH 57
Query: 435 NSPNLTLLM---TSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTI 478
+ L + T + G Y A G + + + + G P I
Sbjct: 58 TEYHGCLQLDNPTHMN-NGDYTLIAKNEYG--KDEKQISAHFMGWPGI 102
Score = 42.8 bits (101), Expect = 4e-05
Identities = 17/108 (15%), Positives = 30/108 (27%), Gaps = 22/108 (20%)
Query: 541 VTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDS------------DKVVG 588
V + P + + V GNP P + W + +
Sbjct: 1 VHFAPTIT---FLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNH 57
Query: 589 NSPNLTLLM---TSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTI 632
+ L + T + G Y A G + + + + G P I
Sbjct: 58 TEYHGCLQLDNPTHMN-NGDYTLIAKNEYG--KDEKQISAHFMGWPGI 102
Score = 39.7 bits (93), Expect = 5e-04
Identities = 12/101 (11%), Positives = 27/101 (26%), Gaps = 14/101 (13%)
Query: 37 QTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSL 92
++ +P V G LQW + L + + + E L
Sbjct: 11 ESPTSDHHWCIPFTV---KGNPKPALQWFYNGAILNESKY---ICTKIHVTNHTEYHGCL 64
Query: 93 EIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD 133
++ ++ Y G+ + + + P
Sbjct: 65 QLDNPTHMNNGDYTLIAKN-EYGK---DEKQISAHFMGWPG 101
Score = 37.8 bits (88), Expect = 0.002
Identities = 13/92 (14%), Positives = 22/92 (23%), Gaps = 17/92 (18%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPA-------------AASATELYLTNITRH 362
+ + NP +W+ N + L L N T
Sbjct: 14 TSDHHWCIPFTVKGNPKP-ALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHM 72
Query: 363 QHDS-IVKCEVHNDVGKSEDSETLDVTYGPRF 393
++ N+ GK E + P
Sbjct: 73 --NNGDYTLIAKNEYGKDEKQISAHFMGWPGI 102
Score = 33.2 bits (76), Expect = 0.083
Identities = 10/63 (15%), Positives = 16/63 (25%), Gaps = 5/63 (7%)
Query: 476 PTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSED 535
PTI + + + P P + W Y G + S V +
Sbjct: 5 PTIT--FLESPTSDHHWCIPFTVKGNPKPA-LQWFYNGAIL--NESKYICTKIHVTNHTE 59
Query: 536 SET 538
Sbjct: 60 YHG 62
Score = 29.3 bits (66), Expect = 1.9
Identities = 7/48 (14%), Positives = 14/48 (29%), Gaps = 5/48 (10%)
Query: 232 VKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVP 279
V +AP + + + NP +W+ N +
Sbjct: 1 VHFAPTITFL----ESPTSDHHWCIPFTVKGNPKP-ALQWFYNGAILN 43
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 63.2 bits (154), Expect = 2e-12
Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 17/108 (15%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEG 88
+E + G + L CR+ D + W +D L +R + G
Sbjct: 5 SSGVEVESFLVHPGDLLQLRCRLRDDVQSINWLRDGVQLAES------NRTRITGE---- 54
Query: 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVL-VPPDPP 135
+E+ + D Y C S+ G + + ++ V P P
Sbjct: 55 --EVEVQDSVPADSGLYACVTSSP-SGSD---TTYFSVNVSDALPSGP 96
Score = 50.1 bits (120), Expect = 1e-07
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 12/82 (14%)
Query: 642 PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHD 701
PGD ++ C + W G ++ S+ + + +++S
Sbjct: 17 PGDLLQLRCRLRDDVQS--INWLRDGVQLA--ESNRTRI--------TGEEVEVQDSVPA 64
Query: 702 HFGVYNCSVSNPYGSDSVEIML 723
G+Y C S+P GSD+ +
Sbjct: 65 DSGLYACVTSSPSGSDTTYFSV 86
Score = 45.1 bits (107), Expect = 5e-06
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 6/72 (8%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH-----EDSDKVVGNSPNLTLLMTS 445
S V G + L C + + I W+ +S++ + + +
Sbjct: 4 GSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEEVEVQDSV 62
Query: 446 DDLAGRYYCKAS 457
+G Y C S
Sbjct: 63 PADSGLYACVTS 74
Score = 45.1 bits (107), Expect = 5e-06
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 6/72 (8%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH-----EDSDKVVGNSPNLTLLMTS 599
S V G + L C + + I W+ +S++ + + +
Sbjct: 4 GSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEEVEVQDSV 62
Query: 600 DDLAGRYYCKAS 611
+G Y C S
Sbjct: 63 PADSGLYACVTS 74
Score = 38.5 bits (90), Expect = 0.001
Identities = 10/82 (12%), Positives = 28/82 (34%), Gaps = 9/82 (10%)
Query: 315 LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA----SATELYLTNITRHQHDS-IVK 369
+ G ++L C+ + W + + + + E+ + + DS +
Sbjct: 15 VHPGDLLQLRCRLRDDV--QSINWLRDGVQLAESNRTRITGEEVEVQDSVP--ADSGLYA 70
Query: 370 CEVHNDVGKSEDSETLDVTYGP 391
C + G +++V+
Sbjct: 71 CVTSSPSGSDTTYFSVNVSDAL 92
Score = 30.4 bits (69), Expect = 0.73
Identities = 14/111 (12%), Positives = 28/111 (25%), Gaps = 24/111 (21%)
Query: 127 TVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEA 185
+ V + + GD L +L C I W+ DG +
Sbjct: 5 SSGVEVESFLVHPGDLL--------QLRC-RLRDDVQ-SINWLRDG-----------VQL 43
Query: 186 SVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAP 236
+ R + + + + C + + + V A
Sbjct: 44 AESNRTRITGEEVEVQDSVPADSGLYACVTSSPSGSD--TTYFSVNVSDAL 92
Score = 29.7 bits (67), Expect = 1.2
Identities = 4/32 (12%), Positives = 11/32 (34%), Gaps = 2/32 (6%)
Query: 248 LVEGTDVRLYCKAEANPSHMKYRWYINDQPVP 279
+ G ++L C+ + W + +
Sbjct: 15 VHPGDLLQLRCRLRDDV--QSINWLRDGVQLA 44
Score = 29.7 bits (67), Expect = 1.2
Identities = 10/78 (12%), Positives = 22/78 (28%), Gaps = 22/78 (28%)
Query: 488 PGDTARVECSAFSIPPPEKVTWSYRGEEI----------------GVGSSD--DYS--VH 527
PGD ++ C + W G ++ +D Y+
Sbjct: 17 PGDLLQLRCRLRDDVQS--INWLRDGVQLAESNRTRITGEEVEVQDSVPADSGLYACVTS 74
Query: 528 NDVGKSEDSETLDVTYGP 545
+ G +++V+
Sbjct: 75 SPSGSDTTYFSVNVSDAL 92
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 63.2 bits (154), Expect = 3e-12
Identities = 25/108 (23%), Positives = 36/108 (33%), Gaps = 19/108 (17%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAMIGS 84
F P+ V G+ L C V G V+ W K L R +
Sbjct: 15 CFLRFPRPVRVVSGAEAELKCVV---LGEPPPVVVWEKGGQQLAASE------RLSF--P 63
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP 132
+ ++ L + + D Y C + GE A +TVL PP
Sbjct: 64 ADGAEHGLLLTAALPTDAGVYVC-RARNAAGE---AYAAAAVTVLEPP 107
Score = 57.4 bits (139), Expect = 3e-10
Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 8/96 (8%)
Query: 630 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688
P + R + G A ++C PPP V W G+++ +S+ S D G
Sbjct: 14 PCFLRFPRPVRVVSGAEAELKCVVLGEPPPV-VVWEKGGQQLA--ASERLSFPAD----G 66
Query: 689 IKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
+ L++ + GVY C N G +
Sbjct: 67 AEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVT 102
Score = 52.8 bits (127), Expect = 1e-08
Identities = 29/105 (27%), Positives = 35/105 (33%), Gaps = 12/105 (11%)
Query: 382 SETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD---------KV 432
+ + D P F P V+V GA L C V G P P + W
Sbjct: 5 ASSGDQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPA 64
Query: 433 VGNSPNLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRP 476
G L L AG Y C+A G E A A V + P
Sbjct: 65 DGAEHGLLLTAALPTDAGVYVCRARNAAG--EAYAAAAVTVLEPP 107
Score = 52.8 bits (127), Expect = 1e-08
Identities = 29/105 (27%), Positives = 35/105 (33%), Gaps = 12/105 (11%)
Query: 536 SETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD---------KV 586
+ + D P F P V+V GA L C V G P P + W
Sbjct: 5 ASSGDQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPA 64
Query: 587 VGNSPNLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRP 630
G L L AG Y C+A G E A A V + P
Sbjct: 65 DGAEHGLLLTAALPTDAGVYVCRARNAAG--EAYAAAAVTVLEPP 107
Score = 40.1 bits (94), Expect = 3e-04
Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 8/104 (7%)
Query: 131 PPDPPRIVQG-DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDG 189
PP ++ + E EL+C G+PP + W G + ++ R++ DG
Sbjct: 10 QGSPPCFLRFPRPVRVVSGAEAELKC-VVLGEPPPVVVWEKGGQQLAASERLS--FPADG 66
Query: 190 RRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVK 233
+ L+LT + C+A+N A Y A + +L
Sbjct: 67 A----EHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEP 106
Score = 34.7 bits (80), Expect = 0.030
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 476 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGK 532
P + R + G A ++C PPP V W G+++ +S+ S D +
Sbjct: 14 PCFLRFPRPVRVVSGAEAELKCVVLGEPPPV-VVWEKGGQQL--AASERLSFPADGAE 68
Score = 34.3 bits (79), Expect = 0.035
Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 12/81 (14%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA--------SATELYLTNITRHQHDS- 366
V G + L C P W Q + A+ + L LT D+
Sbjct: 26 VSGAEAELKCVVLGEPP-PVVVWEKGGQQLAASERLSFPADGAEHGLLLTAAL--PTDAG 82
Query: 367 IVKCEVHNDVGKSEDSETLDV 387
+ C N G++ + + V
Sbjct: 83 VYVCRARNAAGEAYAAAAVTV 103
Score = 29.3 bits (66), Expect = 2.1
Identities = 8/32 (25%), Positives = 10/32 (31%), Gaps = 1/32 (3%)
Query: 249 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPA 280
V G + L C P W Q + A
Sbjct: 26 VSGAEAELKCVVLGEPP-PVVVWEKGGQQLAA 56
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 62.4 bits (152), Expect = 3e-12
Identities = 13/101 (12%), Positives = 28/101 (27%), Gaps = 16/101 (15%)
Query: 28 QKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEE 87
F+ +P+ GS ++W + + ++Y + + E
Sbjct: 9 SAFSKKPRSVEVAAGSPAVFEAETERAGVKVRWQRGGSDISAS------NKYGL--ATEG 60
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
++L + V D Y + L V
Sbjct: 61 TRHTLTVREVGPADQGSYAVIAGSS--------KVKFDLKV 93
Score = 48.1 bits (115), Expect = 4e-07
Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 12/82 (14%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
G A E + V W G +I +S+ Y + + G + TL +RE
Sbjct: 23 GSPAVFEAET-ERAGVK-VRWQRGGSDIS--ASNKYGLATE----GTRHTLTVREVGPAD 74
Query: 703 FGVYNCSVSNPYGSDSVEIMLK 724
G Y GS V+ LK
Sbjct: 75 QGSYAVIA----GSSKVKFDLK 92
Score = 43.9 bits (104), Expect = 1e-05
Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 10/75 (13%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVV----GNSPNLTL 441
F +P SV+V G+ + + ++ W S+K G LT+
Sbjct: 9 SAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGTRHTLTV 67
Query: 442 LMTSDDLAGRYYCKA 456
G Y A
Sbjct: 68 REVGPADQGSYAVIA 82
Score = 43.9 bits (104), Expect = 1e-05
Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 10/75 (13%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVV----GNSPNLTL 595
F +P SV+V G+ + + ++ W S+K G LT+
Sbjct: 9 SAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGTRHTLTV 67
Query: 596 LMTSDDLAGRYYCKA 610
G Y A
Sbjct: 68 REVGPADQGSYAVIA 82
Score = 30.8 bits (70), Expect = 0.53
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 489 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHND 529
G A E + V W G +I +S+ Y + +
Sbjct: 23 GSPAVFEAET-ERAGVK-VRWQRGGSDI--SASNKYGLATE 59
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 62.7 bits (153), Expect = 4e-12
Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 18/106 (16%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
+F P++ + G + +V +G+ + W + + D +
Sbjct: 7 RFIQVPENMSIDEGRFCRMDFKV---SGLPAPDVSWYLNGRTVQS-------DDLHKMIV 56
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLV 130
E+G +SL V D Y C V+ GE + L VL
Sbjct: 57 SEKGLHSLIFEVVRASDAGAYAC-VAKNRAGE---ATFTVQLDVLA 98
Score = 53.9 bits (130), Expect = 4e-09
Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 7/96 (7%)
Query: 630 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688
P I G R++ +P P+ V+W G + S D + ++ E
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAPD-VSWYLNGRTVQ--SDDLHKMIVS---EK 59
Query: 689 IKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
+LI R G Y C N G + + L
Sbjct: 60 GLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLD 95
Score = 50.8 bits (122), Expect = 5e-08
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 14/79 (17%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDL-- 448
PRF P ++ +D G + V G PAP+++W + V + ++++ L
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLN--GRTVQSDDLHKMIVSEKGLHS 63
Query: 449 ----------AGRYYCKAS 457
AG Y C A
Sbjct: 64 LIFEVVRASDAGAYACVAK 82
Score = 50.8 bits (122), Expect = 5e-08
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 14/79 (17%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDL-- 602
PRF P ++ +D G + V G PAP+++W + V + ++++ L
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLN--GRTVQSDDLHKMIVSEKGLHS 63
Query: 603 ----------AGRYYCKAS 611
AG Y C A
Sbjct: 64 LIFEVVRASDAGAYACVAK 82
Score = 43.5 bits (103), Expect = 2e-05
Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 7/101 (6%)
Query: 134 PPRIVQG-DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRT 192
PPR +Q + + E R ++ +G P +++W TV S+ S G
Sbjct: 5 PPRFIQVPENMSIDEGRFCRMDF-KVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGL-- 61
Query: 193 TVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVK 233
+L+ + + C A+N A +L +L K
Sbjct: 62 ---HSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAK 99
Score = 33.5 bits (77), Expect = 0.053
Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 13/83 (15%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAAS---------ATELYLTNITRHQHDS 366
EG R+ K P+ WY+N + V + L + D+
Sbjct: 18 DEGRFCRMDFKVSGLPAP-DVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRA--SDA 74
Query: 367 -IVKCEVHNDVGKSEDSETLDVT 388
C N G++ + LDV
Sbjct: 75 GAYACVAKNRAGEATFTVQLDVL 97
Score = 30.0 bits (68), Expect = 0.87
Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 4/57 (7%)
Query: 476 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVG 531
P I G R++ +P P+ V+W G + S D + +
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAPD-VSWYLNGRTV--QSDDLHKMIVSEK 59
Score = 30.0 bits (68), Expect = 0.99
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 249 VEGTDVRLYCKAEANPSHMKYRWYINDQPVP 279
EG R+ K P+ WY+N + V
Sbjct: 18 DEGRFCRMDFKVSGLPAP-DVSWYLNGRTVQ 47
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 62.3 bits (152), Expect = 5e-12
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 6/96 (6%)
Query: 630 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688
P I + G V C+ P PE VTWS G +I + +
Sbjct: 6 PKIEALPSDISIDEGKVLTVACAFTGEPTPE-VTWSCGGRKIHSQEQGRFHIENT----D 60
Query: 689 IKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
+TLII + + G+Y S+ N +GSDS + +
Sbjct: 61 DLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIH 96
Score = 56.2 bits (136), Expect = 6e-10
Identities = 18/104 (17%), Positives = 31/104 (29%), Gaps = 17/104 (16%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAMIGS 84
K P D + G +T+ C TG + W+ + R+ + +
Sbjct: 7 KIEALPSDISIDEGKVLTVACAF---TGEPTPEVTWSCGGRKIHS----QEQGRFHIENT 59
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
D +L I V D Y + G S + +
Sbjct: 60 D--DLTTLIIMDVQKQDGGLYTLSLGN-EFGS---DSATVNIHI 97
Score = 54.2 bits (131), Expect = 3e-09
Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 15/80 (18%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDD--- 447
P+ A P + +D G + + C G P PE+TW + + + + + D
Sbjct: 6 PKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCG--GRKIHSQEQGRFHIENTDDLT 63
Query: 448 -L---------AGRYYCKAS 457
L G Y
Sbjct: 64 TLIIMDVQKQDGGLYTLSLG 83
Score = 54.2 bits (131), Expect = 3e-09
Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 15/80 (18%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDD--- 601
P+ A P + +D G + + C G P PE+TW + + + + + D
Sbjct: 6 PKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCG--GRKIHSQEQGRFHIENTDDLT 63
Query: 602 -L---------AGRYYCKAS 611
L G Y
Sbjct: 64 TLIIMDVQKQDGGLYTLSLG 83
Score = 38.1 bits (89), Expect = 0.002
Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 8/101 (7%)
Query: 131 PPDPPRIVQG-DTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVD 188
P PP+I + E + + + C + G+P E+TW G + E+
Sbjct: 2 PGIPPKIEALPSDISIDEGKVLTVAC-AFTGEPTPEVTWSCGG-----RKIHSQEQGRFH 55
Query: 189 GRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLK 229
T +TL++ ++ +T N +
Sbjct: 56 IENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIH 96
Score = 36.5 bits (85), Expect = 0.005
Identities = 10/84 (11%), Positives = 27/84 (32%), Gaps = 14/84 (16%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASA----------TELYLTNITRHQHD 365
EG + + C P+ + W + + + T L + ++ + D
Sbjct: 18 DEGKVLTVACAFTGEPT-PEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQK--QD 74
Query: 366 S-IVKCEVHNDVGKSEDSETLDVT 388
+ + N+ G + + +
Sbjct: 75 GGLYTLSLGNEFGSDSATVNIHIR 98
Score = 35.0 bits (81), Expect = 0.017
Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 476 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKS 533
P I + G V C+ P PE VTWS G +I + + N +
Sbjct: 6 PKIEALPSDISIDEGKVLTVACAFTGEPTPE-VTWSCGGRKIHSQEQGRFHIENTDDLT 63
Score = 30.0 bits (68), Expect = 1.1
Identities = 5/35 (14%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 249 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAAS 283
EG + + C P+ + W + + +
Sbjct: 18 DEGKVLTVACAFTGEPT-PEVTWSCGGRKIHSQEQ 51
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 62.0 bits (151), Expect = 5e-12
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 6/82 (7%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
G + C + +VTW + ++ +S+ Y + + + L +++
Sbjct: 16 GGHVKYVCKIENYDQSTQVTWYFGVRQLE--NSEKYEITYE----DGVAILYVKDITKLD 69
Query: 703 FGVYNCSVSNPYGSDSVEIMLK 724
G Y C V N YG DS L
Sbjct: 70 DGTYRCKVVNDYGEDSSYAELF 91
Score = 56.2 bits (136), Expect = 5e-10
Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 14/101 (13%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRV--IDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEE 87
+ + G V C++ D++ + W R L ++Y + + E+
Sbjct: 4 VSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGV------RQLENSEKYEI--TYED 55
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
G L + + DD Y+C+V GE S +A L V
Sbjct: 56 GVAILYVKDITKLDDGTYRCKVVN-DYGE---DSSYAELFV 92
Score = 42.3 bits (100), Expect = 5e-05
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 11/81 (13%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA--------SATELYLTNITRHQHDS- 366
EG V+ CK E + WY + + + LY+ +IT + D
Sbjct: 14 EEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDIT--KLDDG 71
Query: 367 IVKCEVHNDVGKSEDSETLDV 387
+C+V ND G+ L V
Sbjct: 72 TYRCKVVNDYGEDSSYAELFV 92
Score = 41.9 bits (99), Expect = 7e-05
Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 19/101 (18%)
Query: 390 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAP-EITWIHEDSDKVVGNSPNLTLLM----- 443
G + + G V +C ++ ++TW + + NS +
Sbjct: 1 GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFG--VRQLENSEKYEITYEDGVA 58
Query: 444 -------TSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRP 476
T D G Y CK G E + A +++KG
Sbjct: 59 ILYVKDITKLD-DGTYRCKVVNDYG--EDSSYAELFVKGVR 96
Score = 41.9 bits (99), Expect = 7e-05
Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 19/101 (18%)
Query: 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAP-EITWIHEDSDKVVGNSPNLTLLM----- 597
G + + G V +C ++ ++TW + + NS +
Sbjct: 1 GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFG--VRQLENSEKYEITYEDGVA 58
Query: 598 -------TSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRP 630
T D G Y CK G E + A +++KG
Sbjct: 59 ILYVKDITKLD-DGTYRCKVVNDYG--EDSSYAELFVKGVR 96
Score = 36.5 bits (85), Expect = 0.004
Identities = 8/45 (17%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 489 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKS 533
G + C + +VTW + ++ +S+ Y + + G +
Sbjct: 16 GGHVKYVCKIENYDQSTQVTWYFGVRQL--ENSEKYEITYEDGVA 58
Score = 35.4 bits (82), Expect = 0.014
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 249 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPA 280
EG V+ CK E + WY + +
Sbjct: 14 EEGGHVKYVCKIENYDQSTQVTWYFGVRQLEN 45
Score = 27.3 bits (61), Expect = 8.3
Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 6/84 (7%)
Query: 146 TEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKE 205
E ++ C N ++TW G + ++ + E + + + L + +
Sbjct: 14 EEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKY--EITYEDGV----AILYVKDITK 67
Query: 206 HHNTTFTCQAQNTADRTYKVARLK 229
+ T+ C+ N A L
Sbjct: 68 LDDGTYRCKVVNDYGEDSSYAELF 91
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 62.0 bits (151), Expect = 6e-12
Identities = 19/104 (18%), Positives = 36/104 (34%), Gaps = 15/104 (14%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEG 88
K DQT +G + L C + + +WTK+ + DR + +
Sbjct: 9 KILTPLTDQTVNLGKEICLKCEISENIPG-KWTKNGLPVQES------DRLKV--VQKGR 59
Query: 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP 132
+ L I + +D+ Y + + A + V+ P
Sbjct: 60 IHKLVIANALTEDEGDYVFAPDAYNV------TLPAKVHVISGP 97
Score = 40.8 bits (96), Expect = 1e-04
Identities = 13/78 (16%), Positives = 25/78 (32%), Gaps = 9/78 (11%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
G ++C P W+ G + SD V++ G L+I + +
Sbjct: 22 GKEICLKCEISENIP---GKWTKNGLPVQ--ESDRLKVVQK----GRIHKLVIANALTED 72
Query: 703 FGVYNCSVSNPYGSDSVE 720
G Y + + +
Sbjct: 73 EGDYVFAPDAYNVTLPAK 90
Score = 38.5 bits (90), Expect = 0.001
Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 14/97 (14%)
Query: 390 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH-----EDSDKVV----GNSPNLT 440
G + V+ G + L C++ N W ++SD++ G L
Sbjct: 7 GLKILTPLTDQTVNLGKEICLKCEISEN--IPGKWTKNGLPVQESDRLKVVQKGRIHKLV 64
Query: 441 LLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPT 477
+ + G Y V A V++ P+
Sbjct: 65 IANALTEDEGDYVFAPDA---YNVTLPAKVHVISGPS 98
Score = 38.5 bits (90), Expect = 0.001
Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 14/97 (14%)
Query: 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH-----EDSDKVV----GNSPNLT 594
G + V+ G + L C++ N W ++SD++ G L
Sbjct: 7 GLKILTPLTDQTVNLGKEICLKCEISEN--IPGKWTKNGLPVQESDRLKVVQKGRIHKLV 64
Query: 595 LLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPT 631
+ + G Y V A V++ P+
Sbjct: 65 IANALTEDEGDYVFAPDA---YNVTLPAKVHVISGPS 98
Score = 28.5 bits (64), Expect = 3.0
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 3/30 (10%)
Query: 249 VEGTDVRLYCKAEANPSHMKYRWYINDQPV 278
G ++ L C+ N +W N PV
Sbjct: 20 NLGKEICLKCEISENI---PGKWTKNGLPV 46
Score = 28.5 bits (64), Expect = 3.0
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 3/30 (10%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPV 345
G ++ L C+ N +W N PV
Sbjct: 20 NLGKEICLKCEISENI---PGKWTKNGLPV 46
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 62.4 bits (152), Expect = 6e-12
Identities = 20/113 (17%), Positives = 39/113 (34%), Gaps = 21/113 (18%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
++QT +G + + C +G + W KD+ L +
Sbjct: 12 TITGNLENQTTSIGESIEVSCTA---SGNPPPQIMWFKDN------ETLVEDSGIVL--- 59
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRI 137
++G+ +L I V +D+ Y CQ +LG A + + +
Sbjct: 60 -KDGNRNLTIRRVRKEDEGLYTCQA-CSVLGC---AKVEAFFIIEGAQEKTNL 107
Score = 58.1 bits (141), Expect = 2e-10
Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 12/104 (11%)
Query: 384 TLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVVGNSPN 438
T+ P + G + + C GNP P+I W ++ +V N
Sbjct: 4 TVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGN 63
Query: 439 LTLLMTS---DDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTI 478
L + +D G Y C+A V+G EA ++G
Sbjct: 64 RNLTIRRVRKED-EGLYTCQACSVLG--CAKVEAFFIIEGAQEK 104
Score = 58.1 bits (141), Expect = 2e-10
Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 12/104 (11%)
Query: 538 TLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVVGNSPN 592
T+ P + G + + C GNP P+I W ++ +V N
Sbjct: 4 TVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGN 63
Query: 593 LTLLMTS---DDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTI 632
L + +D G Y C+A V+G EA ++G
Sbjct: 64 RNLTIRRVRKED-EGLYTCQACSVLG--CAKVEAFFIIEGAQEK 104
Score = 54.3 bits (131), Expect = 3e-09
Identities = 25/105 (23%), Positives = 39/105 (37%), Gaps = 10/105 (9%)
Query: 621 EATVYLKGRPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYS 679
+ TV + PTI + Q G++ V C+A PPP+ + W E +
Sbjct: 2 QLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQ-IMWFKDNETLV--EDSGIV 58
Query: 680 VLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
+ + L IR R + G+Y C + G VE
Sbjct: 59 LKDG------NRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFI 97
Score = 41.2 bits (97), Expect = 2e-04
Identities = 24/113 (21%), Positives = 43/113 (38%), Gaps = 13/113 (11%)
Query: 126 LTVLVPPDPPRIVQG-DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEE 184
LTVL P I + T+ IE+ C +A+G PP +I W T++ + + +
Sbjct: 3 LTVLERV-APTITGNLENQTTSIGESIEVSC-TASGNPPPQIMWFKDNETLVEDSGIVLK 60
Query: 185 ASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPK 237
L + ++ +TCQA + A ++ A +
Sbjct: 61 DGN--------RNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFI--IEGAQE 103
Score = 38.9 bits (91), Expect = 0.001
Identities = 10/85 (11%), Positives = 28/85 (32%), Gaps = 10/85 (11%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPA------AASATELYLTNITRHQHDS-IV 368
G + + C A NP + W+ +++ + L + + + D +
Sbjct: 23 SIGESIEVSCTASGNPPP-QIMWFKDNETLVEDSGIVLKDGNRNLTIRRVR--KEDEGLY 79
Query: 369 KCEVHNDVGKSEDSETLDVTYGPRF 393
C+ + +G ++ +
Sbjct: 80 TCQACSVLGCAKVEAFFIIEGAQEK 104
Score = 32.7 bits (75), Expect = 0.13
Identities = 11/54 (20%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 227 RLKLLVKYAPKVQVSVIGSNRLV-EGTDVRLYCKAEANPSHMKYRWYINDQPVP 279
+L +L + AP + ++ N+ G + + C A NP + W+ +++ +
Sbjct: 2 QLTVLERVAPTITGNL--ENQTTSIGESIEVSCTASGNPPP-QIMWFKDNETLV 52
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 61.2 bits (149), Expect = 1e-11
Identities = 19/107 (17%), Positives = 27/107 (25%), Gaps = 16/107 (14%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEG 88
F E + C+ + W K L ++ S E
Sbjct: 10 CFTEELTNLQVEEKGTAVFTCKTEHPAATVTWRKGL------LELRASGKHQP--SQEGL 61
Query: 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPP 135
L I + D Y C + +SR A L V P
Sbjct: 62 TLRLTISALEKADSDTYTCDIGQ-------AQSR-AQLLVQGRRSGP 100
Score = 45.4 bits (108), Expect = 5e-06
Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 15/99 (15%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVV----GNSPNLTL 441
F ++QV+ C +PA +TW S K G + LT+
Sbjct: 9 NCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTI 67
Query: 442 LMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIIS 480
+ Y C + + A + ++GR + S
Sbjct: 68 SALEKADSDTYTCDIG-----QAQSRAQLLVQGRRSGPS 101
Score = 45.4 bits (108), Expect = 5e-06
Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 15/99 (15%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVV----GNSPNLTL 595
F ++QV+ C +PA +TW S K G + LT+
Sbjct: 9 NCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTI 67
Query: 596 LMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIIS 634
+ Y C + + A + ++GR + S
Sbjct: 68 SALEKADSDTYTCDIG-----QAQSRAQLLVQGRRSGPS 101
Score = 44.6 bits (106), Expect = 9e-06
Identities = 16/102 (15%), Positives = 30/102 (29%), Gaps = 11/102 (10%)
Query: 630 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688
TA C P VTW E+ +S + ++ G
Sbjct: 9 NCFTEELTNLQVEEKGTAVFTCKT-EHPAAT-VTWRKGLLELR--ASGKHQPSQE----G 60
Query: 689 IKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFP 730
+ L I Y C + +++++ ++S P
Sbjct: 61 LTLRLTISALEKADSDTYTCDIGQ--AQSRAQLLVQGRRSGP 100
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 61.6 bits (150), Expect = 1e-11
Identities = 26/111 (23%), Positives = 36/111 (32%), Gaps = 19/111 (17%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAMIGS 84
+ P+DQ G V L +V TG W K + + + +
Sbjct: 9 QIIQFPEDQKVRAGESVELFGKV---TGTQPITCTWMKFR------KQIQESEHMKV--E 57
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPP 135
+ E L I + Y V LG R LTV+ PDPP
Sbjct: 58 NSENGSKLTILAARQEHCGCYTLLVEN-KLGS---RQAQVNLTVVDKPDPP 104
Score = 58.5 bits (142), Expect = 1e-10
Identities = 23/96 (23%), Positives = 33/96 (34%), Gaps = 8/96 (8%)
Query: 630 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688
P II Q G++ + P TW ++I S+ V
Sbjct: 8 PQIIQFPEDQKVRAGESVELFGKVTGTQPIT-CTWMKFRKQIQ--ESEHMKVENS----E 60
Query: 689 IKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
S L I +R +H G Y V N GS ++ L
Sbjct: 61 NGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLT 96
Score = 54.6 bits (132), Expect = 3e-09
Identities = 22/97 (22%), Positives = 31/97 (31%), Gaps = 14/97 (14%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVVGNSPNLTLLM- 443
P+ P +V G V L V G TW I E V NS N + L
Sbjct: 8 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 67
Query: 444 ---TSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRP 476
+ G Y +G A+ + + +P
Sbjct: 68 LAARQEH-CGCYTLLVENKLG--SRQAQVNLTVVDKP 101
Score = 54.6 bits (132), Expect = 3e-09
Identities = 22/97 (22%), Positives = 31/97 (31%), Gaps = 14/97 (14%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVVGNSPNLTLLM- 597
P+ P +V G V L V G TW I E V NS N + L
Sbjct: 8 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 67
Query: 598 ---TSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRP 630
+ G Y +G A+ + + +P
Sbjct: 68 LAARQEH-CGCYTLLVENKLG--SRQAQVNLTVVDKP 101
Score = 39.6 bits (93), Expect = 6e-04
Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 8/104 (7%)
Query: 134 PPRIVQG-DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRT 192
P+I+Q + +EL G P TW+ + + + E S +G
Sbjct: 7 GPQIIQFPEDQKVRAGESVELFG-KVTGTQPITCTWMKFRKQIQESEHMKVENSENG--- 62
Query: 193 TVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAP 236
S L + ++ H +T +N L ++ K P
Sbjct: 63 ---SKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDP 103
Score = 35.0 bits (81), Expect = 0.021
Identities = 11/82 (13%), Positives = 23/82 (28%), Gaps = 12/82 (14%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA--------SATELYLTNITRHQHDS- 366
G V L+ K + W + + + + ++L + +
Sbjct: 20 RAGESVELFGKVTGTQP-ITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQ--EHCG 76
Query: 367 IVKCEVHNDVGKSEDSETLDVT 388
V N +G + L V
Sbjct: 77 CYTLLVENKLGSRQAQVNLTVV 98
Score = 31.5 bits (72), Expect = 0.33
Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 4/59 (6%)
Query: 476 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKS 533
P II Q G++ + P TW ++I S+ V N S
Sbjct: 8 PQIIQFPEDQKVRAGESVELFGKVTGTQPIT-CTWMKFRKQI--QESEHMKVENSENGS 63
Score = 27.7 bits (62), Expect = 8.6
Identities = 5/30 (16%), Positives = 9/30 (30%), Gaps = 1/30 (3%)
Query: 249 VEGTDVRLYCKAEANPSHMKYRWYINDQPV 278
G V L+ K + W + +
Sbjct: 20 RAGESVELFGKVTGTQP-ITCTWMKFRKQI 48
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 63.4 bits (154), Expect = 1e-11
Identities = 32/190 (16%), Positives = 49/190 (25%), Gaps = 33/190 (17%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTGVLQWTKDD--FALGPHRNLSGFDRYAMIGSDEEGDYS 91
Q VV VT + W K A + F + + S
Sbjct: 2 SQQIYGVVYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGS 61
Query: 92 LEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREI 151
L IY + D+ Y+ + +F L VL P I E
Sbjct: 62 LTIYNLTSSDEDEYEMESPNI-----TDTMKF-FLYVLEMVSKPMI-------YWECSNA 108
Query: 152 ELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTF 211
L C G E+ G + S ++ + + F
Sbjct: 109 TLTCEVLEG-TDVELKLYQGKEHLRSL-----------------RQKTMSYQWTNLRAPF 150
Query: 212 TCQAQNTADR 221
C+A N +
Sbjct: 151 KCKAVNRVSQ 160
Score = 36.4 bits (84), Expect = 0.016
Identities = 17/105 (16%), Positives = 31/105 (29%), Gaps = 12/105 (11%)
Query: 354 LYLTNITRHQHDSIV-KCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLC 412
L + N+T D + E N + L V + + L C
Sbjct: 62 LTIYNLTSS--DEDEYEMESPNITDTMKF--FLYVLEMV-----SKPMIYWECSNATLTC 112
Query: 413 DVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS 457
+V E+ + + + T+ +L + CKA
Sbjct: 113 EVLEGTDVELKLYQ--GKEHLRSLRQKTMSYQWTNLRAPFKCKAV 155
Score = 35.7 bits (82), Expect = 0.028
Identities = 13/102 (12%), Positives = 31/102 (30%), Gaps = 5/102 (4%)
Query: 287 LYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVP 346
Y V V E ++ L C+ + ++ + Y + +
Sbjct: 74 EYEMESPNITDTMKFFLYVLEMVSKPMIYWECSNATLTCEVL-EGTDVELKLYQGKEHLR 132
Query: 347 AAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVT 388
S + ++ + KC+ N V + + E ++
Sbjct: 133 ---SLRQKTMSYQWTNLRAPF-KCKAVNRVSQESEMEVVNCP 170
Score = 34.9 bits (80), Expect = 0.055
Identities = 20/187 (10%), Positives = 43/187 (22%), Gaps = 57/187 (30%)
Query: 562 VNLLCDVDGNPAPEITWIHEDS-----------------DKVVGNSPNLTLL---MTSDD 601
V P E+ W + ++V ++ + +L +TS D
Sbjct: 13 VTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSD 71
Query: 602 LAGRYYCKASVMGFPEVGAEATVYLK-----GRPTIISHRTQFGIPGDTARVECSAFSIP 656
Y ++ + +L +P I A + C
Sbjct: 72 -EDEYEMESP-----NITDTMKFFLYVLEMVSKPMIYWE-------CSNATLTCEVLEGT 118
Query: 657 PPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGS 716
E + E + + + + C N
Sbjct: 119 DVE-LKLYQGKEHLRSLR-----------------QKTMSYQWTNLRAPFKCKAVNRVSQ 160
Query: 717 DSVEIML 723
+S ++
Sbjct: 161 ESEMEVV 167
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 61.2 bits (149), Expect = 1e-11
Identities = 22/113 (19%), Positives = 34/113 (30%), Gaps = 14/113 (12%)
Query: 20 GSLAQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRY 79
GS + + + D T + C V D+ +W K+ + P R
Sbjct: 1 GSSGSSGQLEVLQDIADLTVKAAEQAVFKCEVSDEKVTGKWYKNGVEVRPS------KRI 54
Query: 80 AMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP 132
+ S + L I V +D+ Y L S A L L
Sbjct: 55 TI--SHVGRFHKLVIDDVRPEDEGDYTFVPDGYAL------SLSAKLNFLEIK 99
Score = 50.1 bits (120), Expect = 1e-07
Identities = 17/102 (16%), Positives = 30/102 (29%), Gaps = 9/102 (8%)
Query: 627 KGRPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPL 685
G+ ++ + A +C S W G E+ S ++
Sbjct: 6 SGQLEVLQDIADLTVKAAEQAVFKCEV-SDEKVT-GKWYKNGVEVR--PSKRITISHV-- 59
Query: 686 KEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQK 727
G L+I + R + G Y S S ++ K
Sbjct: 60 --GRFHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLNFLEIK 99
Score = 39.7 bits (93), Expect = 5e-04
Identities = 9/76 (11%), Positives = 15/76 (19%), Gaps = 10/76 (13%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVV----GNSPNLTL 441
+ V C+V W S ++ G L +
Sbjct: 9 LEVLQDIADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISHVGRFHKLVI 67
Query: 442 LMTSDDLAGRYYCKAS 457
+ G Y
Sbjct: 68 DDVRPEDEGDYTFVPD 83
Score = 39.7 bits (93), Expect = 5e-04
Identities = 9/76 (11%), Positives = 15/76 (19%), Gaps = 10/76 (13%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVV----GNSPNLTL 595
+ V C+V W S ++ G L +
Sbjct: 9 LEVLQDIADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISHVGRFHKLVI 67
Query: 596 LMTSDDLAGRYYCKAS 611
+ G Y
Sbjct: 68 DDVRPEDEGDYTFVPD 83
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 60.4 bits (147), Expect = 2e-11
Identities = 23/104 (22%), Positives = 33/104 (31%), Gaps = 19/104 (18%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
QD T S + TG WTKD A+ +Y +
Sbjct: 8 VIVTGLQDTTVSSDSVAKFAVKA---TGEPRPTAIWTKDGKAITQGG------KYKLS-- 56
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
+++G + LEI+ D Y C G S LT+
Sbjct: 57 EDKGGFFLEIHKTDTSDSGLYTC-TVKNSAGS---VSSSCKLTI 96
Score = 54.2 bits (131), Expect = 3e-09
Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 8/96 (8%)
Query: 629 RPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKE 687
+P I++ + A+ A P P W+ G+ I Y + ED
Sbjct: 6 KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPT-AIWTKDGKAIT--QGGKYKLSED---- 58
Query: 688 GIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723
L I ++ G+Y C+V N GS S L
Sbjct: 59 KGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKL 94
Score = 50.0 bits (120), Expect = 1e-07
Identities = 14/91 (15%), Positives = 21/91 (23%), Gaps = 12/91 (13%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVVGNSPNLTLLM- 443
P V + G P P W I + + L
Sbjct: 7 PVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEI 66
Query: 444 ---TSDDLAGRYYCKAS-VMGFPEVGAEATV 470
+ D +G Y C G + T+
Sbjct: 67 HKTDTSD-SGLYTCTVKNSAGSVSSSCKLTI 96
Score = 50.0 bits (120), Expect = 1e-07
Identities = 14/91 (15%), Positives = 21/91 (23%), Gaps = 12/91 (13%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVVGNSPNLTLLM- 597
P V + G P P W I + + L
Sbjct: 7 PVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEI 66
Query: 598 ---TSDDLAGRYYCKAS-VMGFPEVGAEATV 624
+ D +G Y C G + T+
Sbjct: 67 HKTDTSD-SGLYTCTVKNSAGSVSSSCKLTI 96
Score = 34.2 bits (79), Expect = 0.030
Identities = 16/98 (16%), Positives = 30/98 (30%), Gaps = 12/98 (12%)
Query: 134 PPRIVQG-DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSN--VRVTEEASVDGR 190
P IV G + D + A G+P W + +++E+
Sbjct: 6 KPVIVTGLQDTTVSSDSVAKFAV-KATGEPRPTAIWTKDGKAITQGGKYKLSEDKGG--- 61
Query: 191 RTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARL 228
L + + +TC +N+A +L
Sbjct: 62 -----FFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKL 94
Score = 33.8 bits (78), Expect = 0.051
Identities = 13/81 (16%), Positives = 21/81 (25%), Gaps = 12/81 (14%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA--------SATELYLTNITRHQHDS- 366
+ + KA P W + + + L + DS
Sbjct: 19 SSDSVAKFAVKATGEPR-PTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTD--TSDSG 75
Query: 367 IVKCEVHNDVGKSEDSETLDV 387
+ C V N G S L +
Sbjct: 76 LYTCTVKNSAGSVSSSCKLTI 96
Score = 31.5 bits (72), Expect = 0.30
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 4/60 (6%)
Query: 475 RPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKS 533
+P I++ + A+ A P P W+ G+ I Y + D G
Sbjct: 6 KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPT-AIWTKDGKAI--TQGGKYKLSEDKGGF 62
Score = 29.9 bits (68), Expect = 1.1
Identities = 4/31 (12%), Positives = 9/31 (29%), Gaps = 1/31 (3%)
Query: 249 VEGTDVRLYCKAEANPSHMKYRWYINDQPVP 279
+ + KA P W + + +
Sbjct: 19 SSDSVAKFAVKATGEPR-PTAIWTKDGKAIT 48
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 60.7 bits (147), Expect = 2e-11
Identities = 23/110 (20%), Positives = 37/110 (33%), Gaps = 15/110 (13%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDD----------FALGPHRNLSGFDRY 79
P+ T V + C G ++W + G H + +
Sbjct: 8 PESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGR 67
Query: 80 AMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGIL-GEPAIRSRFATLTV 128
+ GD SL+I + +DD Y C+V+ G IR + L V
Sbjct: 68 LKVSHKVPGDVSLQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKIIELRV 117
Score = 33.8 bits (77), Expect = 0.069
Identities = 23/119 (19%), Positives = 38/119 (31%), Gaps = 19/119 (15%)
Query: 628 GRPTIISHRTQFGIPGDTARVEC--SAFSIPPPEKVTWSYRGEEIGV-----GSSDDYSV 680
G PT+ + + G +++C V W R V S+ D+
Sbjct: 1 GHPTLKTPESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQ 60
Query: 681 LED-------PLKEGIKSTLIIRESRHDHFGVYNCSVSN--PYGSDSVE---IMLKPQK 727
K +L I + D Y C V+ P G+ + I L+ +K
Sbjct: 61 QAKYRGRLKVSHKVPGDVSLQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKIIELRVRK 119
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 60.4 bits (147), Expect = 2e-11
Identities = 18/104 (17%), Positives = 32/104 (30%), Gaps = 19/104 (18%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
+ +P+ T G C G + W + L R+ + +
Sbjct: 16 RILTKPRSMTVYEGESARFSCDT---DGEPVPTVTWLRKGQVLSTS------ARHQV--T 64
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
+ + EI V D+ Y V G+ + TLT+
Sbjct: 65 TTKYKSTFEISSVQASDEGNYSV-VVENSEGK---QEAEFTLTI 104
Score = 56.6 bits (137), Expect = 6e-10
Identities = 19/88 (21%), Positives = 28/88 (31%), Gaps = 13/88 (14%)
Query: 381 DSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLT 440
+ T R +P S+ V G CD DG P P +TW+ + +V+ S
Sbjct: 5 HHHSSKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRK--GQVLSTSARHQ 62
Query: 441 LLMTSDDL-----------AGRYYCKAS 457
+ T G Y
Sbjct: 63 VTTTKYKSTFEISSVQASDEGNYSVVVE 90
Score = 56.6 bits (137), Expect = 6e-10
Identities = 19/88 (21%), Positives = 28/88 (31%), Gaps = 13/88 (14%)
Query: 535 DSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLT 594
+ T R +P S+ V G CD DG P P +TW+ + +V+ S
Sbjct: 5 HHHSSKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRK--GQVLSTSARHQ 62
Query: 595 LLMTSDDL-----------AGRYYCKAS 611
+ T G Y
Sbjct: 63 VTTTKYKSTFEISSVQASDEGNYSVVVE 90
Score = 55.1 bits (133), Expect = 2e-09
Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 8/99 (8%)
Query: 630 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688
I++ R+ G++AR C P P VTW +G+ + +S + V
Sbjct: 15 ARILTKPRSMTVYEGESARFSCDTDGEPVPT-VTWLRKGQVLS--TSARHQVTTT----K 67
Query: 689 IKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQK 727
KST I + G Y+ V N G E L QK
Sbjct: 68 YKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQK 106
Score = 40.4 bits (95), Expect = 2e-04
Identities = 13/97 (13%), Positives = 32/97 (32%), Gaps = 8/97 (8%)
Query: 134 PPRIVQG-DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRT 192
RI+ ++ E C +G+P +TW+ + ++ R +
Sbjct: 14 AARILTKPRSMTVYEGESARFSC-DTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYK--- 69
Query: 193 TVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLK 229
ST ++ + ++ +N+ + L
Sbjct: 70 ---STFEISSVQASDEGNYSVVVENSEGKQEAEFTLT 103
Score = 35.8 bits (83), Expect = 0.011
Identities = 16/81 (19%), Positives = 25/81 (30%), Gaps = 12/81 (14%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAAS--------ATELYLTNITRHQHDS- 366
EG R C + P W Q + +A + ++++ D
Sbjct: 27 YEGESARFSCDTDGEPVP-TVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQA--SDEG 83
Query: 367 IVKCEVHNDVGKSEDSETLDV 387
V N GK E TL +
Sbjct: 84 NYSVVVENSEGKQEAEFTLTI 104
Score = 32.7 bits (75), Expect = 0.14
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 476 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKS 533
I++ R+ G++AR C P P VTW +G+ + +S + V KS
Sbjct: 15 ARILTKPRSMTVYEGESARFSCDTDGEPVPT-VTWLRKGQVL--STSARHQVTTTKYKS 70
Score = 28.1 bits (63), Expect = 4.5
Identities = 8/34 (23%), Positives = 11/34 (32%), Gaps = 1/34 (2%)
Query: 249 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA 282
EG R C + P W Q + +A
Sbjct: 27 YEGESARFSCDTDGEPVP-TVTWLRKGQVLSTSA 59
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 60.5 bits (147), Expect = 3e-11
Identities = 28/121 (23%), Positives = 37/121 (30%), Gaps = 21/121 (17%)
Query: 20 GSLAQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSG 75
GS P +QT V L C TG + W KD +
Sbjct: 1 GSSGSSGPPVIRQGPVNQTVAVDGTFVLSCVA---TGSPVPTILWRKDGVLVSTQD---- 53
Query: 76 FDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPP 135
R + + L+I L D RY C ST GE + A + V P
Sbjct: 54 -SRIKQLENG-----VLQIRYAKLGDTGRYTCIAST-PSGE---ATWSAYIEVQEFGVPV 103
Query: 136 R 136
+
Sbjct: 104 Q 104
Score = 56.3 bits (136), Expect = 9e-10
Identities = 21/95 (22%), Positives = 29/95 (30%), Gaps = 10/95 (10%)
Query: 630 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688
P I Q T + C A P P + W G + LE+
Sbjct: 9 PVIRQGPVNQTVAVDGTFVLSCVATGSPVPT-ILWRKDGVLV-STQDSRIKQLEN----- 61
Query: 689 IKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723
L IR ++ G Y C S P G + +
Sbjct: 62 --GVLQIRYAKLGDTGRYTCIASTPSGEATWSAYI 94
Score = 54.4 bits (131), Expect = 5e-09
Identities = 24/100 (24%), Positives = 32/100 (32%), Gaps = 14/100 (14%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNS-----PNLTL---- 441
P R P + V L C G+P P I W + +S N L
Sbjct: 9 PVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRY 68
Query: 442 LMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIIS 480
D GRY C AS G E A + ++ +
Sbjct: 69 AKLGD--TGRYTCIASTPSG--EATWSAYIEVQEFGVPVQ 104
Score = 54.4 bits (131), Expect = 5e-09
Identities = 24/100 (24%), Positives = 32/100 (32%), Gaps = 14/100 (14%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNS-----PNLTL---- 595
P R P + V L C G+P P I W + +S N L
Sbjct: 9 PVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRY 68
Query: 596 LMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIIS 634
D GRY C AS G E A + ++ +
Sbjct: 69 AKLGD--TGRYTCIASTPSG--EATWSAYIEVQEFGVPVQ 104
Score = 45.9 bits (109), Expect = 4e-06
Identities = 24/105 (22%), Positives = 34/105 (32%), Gaps = 12/105 (11%)
Query: 134 PPRIVQGDTLYT-TEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRR 191
PP I QG T D L C A G P I W DG + R+ + +
Sbjct: 8 PPVIRQGPVNQTVAVDGTFVLSC-VATGSPVPTILWRKDGVLVSTQDSRIKQLEN----- 61
Query: 192 TTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAP 236
L + K +TC A + A +++ P
Sbjct: 62 ----GVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVP 102
Score = 34.4 bits (79), Expect = 0.037
Identities = 16/101 (15%), Positives = 26/101 (25%), Gaps = 12/101 (11%)
Query: 315 LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAAS------ATELYLTNITRHQHDS-I 367
+ L C A +P W + V S L + D+
Sbjct: 20 VAVDGTFVLSCVATGSPVP-TILWRKDGVLVSTQDSRIKQLENGVLQIRYAKL--GDTGR 76
Query: 368 VKCEVHNDVGKSEDSETLDVTYGPRFRA--RPYSVQVDRGA 406
C G++ S ++V RP + A
Sbjct: 77 YTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTDPNLIPSA 117
Score = 32.0 bits (73), Expect = 0.26
Identities = 16/111 (14%), Positives = 24/111 (21%), Gaps = 28/111 (25%)
Query: 476 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVH------- 527
P I Q T + C A P P + W G +
Sbjct: 9 PVIRQGPVNQTVAVDGTFVLSCVATGSPVPT-ILWRKDGVLV-STQDSRIKQLENGVLQI 66
Query: 528 ----------------NDVGKSEDSETLDVTYGPRFRA--RPYSVQVDRGA 560
G++ S ++V RP + A
Sbjct: 67 RYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTDPNLIPSA 117
Score = 28.2 bits (63), Expect = 5.5
Identities = 7/36 (19%), Positives = 10/36 (27%), Gaps = 1/36 (2%)
Query: 248 LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAAS 283
+ L C A +P W + V S
Sbjct: 20 VAVDGTFVLSCVATGSPVP-TILWRKDGVLVSTQDS 54
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 60.1 bits (146), Expect = 3e-11
Identities = 16/118 (13%), Positives = 28/118 (23%), Gaps = 18/118 (15%)
Query: 20 GSLAQYREQKFAMEPQDQTAVVGSRVTLPCRVI--DKTGVLQWTKDDFALGPHRNLSGFD 77
GS + + G + C + + WT +G
Sbjct: 1 GSSGSSGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSS------S 54
Query: 78 RYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPP 135
R+ + + Y L + D V + A+L V P
Sbjct: 55 RFQA--TRQGRKYILVVREAAPSDAGEVVFSVRG--------LTSKASLIVRERSGPS 102
Score = 52.4 bits (126), Expect = 2e-08
Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 6/86 (6%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
G++ EC + W+ G+ +G SS + G K L++RE+
Sbjct: 23 GESCSFECVLSHESASDPAMWTVGGKTVG--SSSRFQATRQ----GRKYILVVREAAPSD 76
Query: 703 FGVYNCSVSNPYGSDSVEIMLKPQKS 728
G SV S+ + + S
Sbjct: 77 AGEVVFSVRGLTSKASLIVRERSGPS 102
Score = 44.7 bits (106), Expect = 9e-06
Identities = 13/100 (13%), Positives = 30/100 (30%), Gaps = 15/100 (15%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDV-DGNPAPEITWIH-----EDSDKVV----GNSPNLT 440
R +++V G + C + + + W S + G L
Sbjct: 9 VGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILV 68
Query: 441 LLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIIS 480
+ + AG + ++A++ ++ R S
Sbjct: 69 VREAAPSDAGEVVFSVR-----GLTSKASLIVRERSGPSS 103
Score = 44.7 bits (106), Expect = 9e-06
Identities = 13/100 (13%), Positives = 30/100 (30%), Gaps = 15/100 (15%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDV-DGNPAPEITWIH-----EDSDKVV----GNSPNLT 594
R +++V G + C + + + W S + G L
Sbjct: 9 VGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILV 68
Query: 595 LLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIIS 634
+ + AG + ++A++ ++ R S
Sbjct: 69 VREAAPSDAGEVVFSVR-----GLTSKASLIVRERSGPSS 103
Score = 34.7 bits (80), Expect = 0.028
Identities = 19/107 (17%), Positives = 32/107 (29%), Gaps = 13/107 (12%)
Query: 132 PDPPRIVQG-DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGR 190
I + T+ E EC+ ++ W G TV S+ R +A+ GR
Sbjct: 6 SGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRF--QATRQGR 63
Query: 191 RTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPK 237
K LV+ + + L+V+
Sbjct: 64 ----KYILVVREAAPSDAGEVVFSVRGLTSKA------SLIVRERSG 100
Score = 30.8 bits (70), Expect = 0.60
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 489 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHND 529
G++ EC + W+ G+ + GSS +
Sbjct: 23 GESCSFECVLSHESASDPAMWTVGGKTV--GSSSRFQATRQ 61
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 60.2 bits (146), Expect = 4e-11
Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 5/95 (5%)
Query: 630 PTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGI 689
P ++S +E PPP + W + G+ + S V E
Sbjct: 9 PRVVSLEE--PELRLEHCIEFVVRGNPPPT-LHWLHNGQPLR--ESKIIHVEYYQEGEIS 63
Query: 690 KSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
+ L+ + H + G Y NP G+ + I
Sbjct: 64 EGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGH 98
Score = 47.9 bits (114), Expect = 8e-07
Identities = 25/120 (20%), Positives = 43/120 (35%), Gaps = 10/120 (8%)
Query: 126 LTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEE 184
LTV PP R+V E +E G PP + W+ +G + + + E
Sbjct: 3 LTVYYPP---RVVS--LEEPELRLEHCIEF-VVRGNPPPTLHWLHNGQ-PLRESKIIHVE 55
Query: 185 ASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIG 244
+G + L+ ++N +T A+N + L + P +VS
Sbjct: 56 YYQEGEISE--GCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSPTP 113
Score = 43.7 bits (103), Expect = 2e-05
Identities = 22/111 (19%), Positives = 31/111 (27%), Gaps = 21/111 (18%)
Query: 385 LDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVV------ 433
L V Y PR + + V GNP P + W+H S +
Sbjct: 3 LTVYYPPRVVSLEEPE---LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQE 59
Query: 434 GNSPNLTLLM---TSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIIS 480
G LL T + G Y A +G + P +
Sbjct: 60 GEISEGCLLFNKPTHYN-NGNYTLIAKNPLG--TANQTINGHFLKEPFPVD 107
Score = 43.7 bits (103), Expect = 2e-05
Identities = 22/111 (19%), Positives = 31/111 (27%), Gaps = 21/111 (18%)
Query: 539 LDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVV------ 587
L V Y PR + + V GNP P + W+H S +
Sbjct: 3 LTVYYPPRVVSLEEPE---LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQE 59
Query: 588 GNSPNLTLLM---TSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIIS 634
G LL T + G Y A +G + P +
Sbjct: 60 GEISEGCLLFNKPTHYN-NGNYTLIAKNPLG--TANQTINGHFLKEPFPVD 107
Score = 39.0 bits (91), Expect = 0.001
Identities = 14/102 (13%), Positives = 22/102 (21%), Gaps = 15/102 (14%)
Query: 39 AVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEI 94
+ + V G L W + L S E + L
Sbjct: 17 PELRLEHCIEFVV---RGNPPPTLHWLHNGQPLRE----SKIIHVEYYQEGEISEGCLLF 69
Query: 95 YPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPR 136
++ Y LG ++ L P P
Sbjct: 70 NKPTHYNNGNYTLIAKN-PLGT---ANQTINGHFLKEPFPVD 107
Score = 28.6 bits (64), Expect = 4.5
Identities = 13/88 (14%), Positives = 21/88 (23%), Gaps = 14/88 (15%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVP------------AAASATELYLTNITRHQ 363
+ + NP W N QP+ S L T H
Sbjct: 18 ELRLEHCIEFVVRGNPPP-TLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPT-HY 75
Query: 364 HDSIVKCEVHNDVGKSEDSETLDVTYGP 391
++ N +G + + P
Sbjct: 76 NNGNYTLIAKNPLGTANQTINGHFLKEP 103
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 60.1 bits (146), Expect = 4e-11
Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 8/82 (9%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
G+ + P P+ V W+ G + + V + +R++
Sbjct: 39 GEQLNLVVPFQGKPRPQ-VVWTKGGAPL---DTSRVHVRTSDFD----TVFFVRQAARSD 90
Query: 703 FGVYNCSVSNPYGSDSVEIMLK 724
G Y SV D+ I ++
Sbjct: 91 SGEYELSVQIENMKDTATIRIR 112
Score = 46.2 bits (110), Expect = 3e-06
Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 18/96 (18%)
Query: 391 PRFRARPY---SVQVDRGAGVNLLCDVDGNPAPEITWIHE----DSDKV-VGNSPNLTLL 442
P+ R + + G +NL+ G P P++ W D+ +V V S T+
Sbjct: 22 PKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVF 81
Query: 443 M----TSDDLAGRYYCKASVMGFPEVG-AEATVYLK 473
D +G Y + E AT+ ++
Sbjct: 82 FVRQAARSD-SGEYELSVQI----ENMKDTATIRIR 112
Score = 46.2 bits (110), Expect = 3e-06
Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 18/96 (18%)
Query: 545 PRFRARPY---SVQVDRGAGVNLLCDVDGNPAPEITWIHE----DSDKV-VGNSPNLTLL 596
P+ R + + G +NL+ G P P++ W D+ +V V S T+
Sbjct: 22 PKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVF 81
Query: 597 M----TSDDLAGRYYCKASVMGFPEVG-AEATVYLK 627
D +G Y + E AT+ ++
Sbjct: 82 FVRQAARSD-SGEYELSVQI----ENMKDTATIRIR 112
Score = 43.5 bits (103), Expect = 3e-05
Identities = 17/103 (16%), Positives = 27/103 (26%), Gaps = 20/103 (19%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGD 89
Q VG ++ L G + WTK L R + SD D
Sbjct: 31 RQTYIRKVGEQLNLVVPF---QGKPRPQVVWTKGGAPLDT-------SRVHVRTSD--FD 78
Query: 90 YSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP 132
+ D Y+ V + + + V+
Sbjct: 79 TVFFVRQAARSDSGEYELSVQI-ENMK---DTATIRIRVVEKA 117
Score = 37.4 bits (87), Expect = 0.004
Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 14/109 (12%)
Query: 115 GEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDRE----IELECISANGKPPAEITWID 170
G + +T+ +PP+I L T R+ + L GKP ++ W
Sbjct: 4 GSSGTLA--QPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVV-PFQGKPRPQVVWTK 60
Query: 171 GTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTA 219
G G + RV S + + + + Q
Sbjct: 61 G-GAPLDTSRVHVRTSDFD------TVFFVRQAARSDSGEYELSVQIEN 102
Score = 33.9 bits (78), Expect = 0.061
Identities = 12/80 (15%), Positives = 23/80 (28%), Gaps = 11/80 (13%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAA-------ASATELYLTNITRHQHDS-IV 368
G + L + P + W P+ + T ++ R DS
Sbjct: 38 VGEQLNLVVPFQGKPRP-QVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAAR--SDSGEY 94
Query: 369 KCEVHNDVGKSEDSETLDVT 388
+ V + K + + V
Sbjct: 95 ELSVQIENMKDTATIRIRVV 114
Score = 32.7 bits (75), Expect = 0.15
Identities = 7/45 (15%), Positives = 14/45 (31%), Gaps = 4/45 (8%)
Query: 489 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKS 533
G+ + P P+ V W+ G + + V +
Sbjct: 39 GEQLNLVVPFQGKPRPQ-VVWTKGGAPL---DTSRVHVRTSDFDT 79
Score = 30.1 bits (68), Expect = 1.4
Identities = 7/50 (14%), Positives = 16/50 (32%), Gaps = 3/50 (6%)
Query: 232 VKYAPKVQVSVIGSNRLV--EGTDVRLYCKAEANPSHMKYRWYINDQPVP 279
+ PK+++ + G + L + P + W P+
Sbjct: 18 IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRP-QVVWTKGGAPLD 66
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 61.5 bits (149), Expect = 5e-11
Identities = 23/196 (11%), Positives = 48/196 (24%), Gaps = 39/196 (19%)
Query: 33 EPQDQTAVVGSRVTLPCR---VIDKTGVLQWTKDDFALGPHRNLSGF----DRYAMIGSD 85
+ +G + L + D ++W + + + + ++
Sbjct: 2 DSGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILA-- 59
Query: 86 EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYT 145
+ L+I + DD Y V + G + L +L P I
Sbjct: 60 ---NGDLKIKNLTRDDSGTYNVTVYSTN-GTRILNKAL-DLRILEMVSKPMI-------Y 107
Query: 146 TEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKE 205
E L C E+ ++ +
Sbjct: 108 WECSNATLTC-EVLEGTDVELKL-----------------YQGKEHLRSLRQKTMSYQWT 149
Query: 206 HHNTTFTCQAQNTADR 221
+ F C+A N +
Sbjct: 150 NLRAPFKCKAVNRVSQ 165
Score = 54.2 bits (130), Expect = 2e-08
Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 6/104 (5%)
Query: 354 LYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCD 413
L + N+TR V++ G ++ LD+ + + L C+
Sbjct: 63 LKIKNLTR-DDSGTYNVTVYSTNGTRILNKALDLRILEMV---SKPMIYWECSNATLTCE 118
Query: 414 VDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS 457
V E+ + + + T+ +L + CKA
Sbjct: 119 VLEGTDVELKLYQG--KEHLRSLRQKTMSYQWTNLRAPFKCKAV 160
Score = 51.1 bits (122), Expect = 2e-07
Identities = 20/149 (13%), Positives = 44/149 (29%), Gaps = 12/149 (8%)
Query: 159 NGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKS-TLVLTPKKEHHNTTFTCQAQN 217
E+ W G+ V R + G + + L + + T+ +
Sbjct: 23 MTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYS 82
Query: 218 TADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQP 277
T L L + V +I E ++ L C+ ++ + Y +
Sbjct: 83 TNGTRILNKALDL--RILEMVSKPMI----YWECSNATLTCEVLEGT-DVELKLYQGKEH 135
Query: 278 VPAAASATELYLTNITRHQHDSIVKCEVQ 306
+ S + ++ + KC+
Sbjct: 136 LR---SLRQKTMSYQWTNLRAPF-KCKAV 160
Score = 50.0 bits (119), Expect = 5e-07
Identities = 24/187 (12%), Positives = 44/187 (23%), Gaps = 41/187 (21%)
Query: 551 PYSVQVDRGAGVNLLCDV--DGNPAPEITWIHEDS--------------DKVVGNSPNLT 594
+V G G+NL + E+ W + N
Sbjct: 3 SGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGD 62
Query: 595 LL---MTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECS 651
L +T DD +G Y + + L+ + A + C
Sbjct: 63 LKIKNLTRDD-SGTYNVTVYSTNGTRI-LNKALDLRILEMVSKPMIY--WECSNATLTCE 118
Query: 652 AFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVS 711
E + E L+ + T+ + + + C
Sbjct: 119 VLEGTDVE-LKLYQGKE---------------HLRSLRQKTMSYQWTNLR--APFKCKAV 160
Query: 712 NPYGSDS 718
N +S
Sbjct: 161 NRVSQES 167
Score = 47.6 bits (113), Expect = 3e-06
Identities = 13/86 (15%), Positives = 28/86 (32%), Gaps = 5/86 (5%)
Query: 526 VHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDK 585
V++ G ++ LD+ + + L C+V E+ +
Sbjct: 80 VYSTNGTRILNKALDLRILEMV---SKPMIYWECSNATLTCEVLEGTDVELKLYQG--KE 134
Query: 586 VVGNSPNLTLLMTSDDLAGRYYCKAS 611
+ + T+ +L + CKA
Sbjct: 135 HLRSLRQKTMSYQWTNLRAPFKCKAV 160
Score = 42.6 bits (100), Expect = 2e-04
Identities = 10/73 (13%), Positives = 27/73 (36%), Gaps = 5/73 (6%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHND 375
E ++ L C+ ++ + Y + + S + ++ + KC+ N
Sbjct: 108 WECSNATLTCEVLEGT-DVELKLYQGKEHLR---SLRQKTMSYQWTNLRAPF-KCKAVNR 162
Query: 376 VGKSEDSETLDVT 388
V + + E ++
Sbjct: 163 VSQESEMEVVNCP 175
Score = 38.0 bits (88), Expect = 0.005
Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 2/84 (2%)
Query: 639 FGIPGDTARVECSAFSIPPP-EKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKS-TLIIR 696
+G G + F + ++V W + L+ E + + L I+
Sbjct: 7 WGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIK 66
Query: 697 ESRHDHFGVYNCSVSNPYGSDSVE 720
D G YN +V + G+ +
Sbjct: 67 NLTRDDSGTYNVTVYSTNGTRILN 90
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 62.4 bits (151), Expect = 5e-11
Identities = 33/213 (15%), Positives = 60/213 (28%), Gaps = 24/213 (11%)
Query: 33 EPQDQTAVVGSRVTLPCRVIDKT-GVLQWTKDDFALGPHRNLSGFDRYAMIGSDEE---- 87
E + V L + G W K + M + +
Sbjct: 5 EAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGR 64
Query: 88 ----GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTL 143
+ SL + + D Y ++ V P P + +T
Sbjct: 65 EIIYSNGSLLFQMITMKDMGVYTLDMTDENYR---RTQATVRFHVHQPVTQPFLQVTNT- 120
Query: 144 YTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPK 203
E + L C+S A I W+ + ++ R+T S + L + P
Sbjct: 121 TVKELDSVTLTCLS--NDIGANIQWLFNSQSLQLTERMT--LSQNNS------ILRIDPI 170
Query: 204 KEHHNTTFTCQAQNTADRTYKVARLKLLVKYAP 236
K + C+ N + +KL + + P
Sbjct: 171 KREDAGEYQCEISNPVSVR-RSNSIKLDIIFDP 202
Score = 58.5 bits (141), Expect = 1e-09
Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 13/109 (11%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEG 88
+ ++ + T VTL C D +QW + ++L +R + ++
Sbjct: 112 QPFLQVTNTTVKELDSVTLTCLSNDIGANIQWLFN------SQSLQLTERMTLSQNNS-- 163
Query: 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRI 137
L I P+ +D YQC++S + RS L ++ P
Sbjct: 164 --ILRIDPIKREDAGEYQCEISNPV---SVRRSNSIKLDIIFDPHHHHH 207
Score = 55.8 bits (134), Expect = 8e-09
Identities = 30/196 (15%), Positives = 55/196 (28%), Gaps = 36/196 (18%)
Query: 555 QVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGN-----------------------SP 591
QV V LL W ++ +
Sbjct: 10 QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYS 69
Query: 592 NLTLLM---TSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARV 648
N +LL T D G Y + + A ++ T + + V
Sbjct: 70 NGSLLFQMITMKD-MGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSV 128
Query: 649 ECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC 708
+ S + W + + + + ++ ++ ++ S L I + + G Y C
Sbjct: 129 TLTCLSNDIGANIQWLFNSQSLQL--TERMTLSQN------NSILRIDPIKREDAGEYQC 180
Query: 709 SVSNPYGS-DSVEIML 723
+SNP S I L
Sbjct: 181 EISNPVSVRRSNSIKL 196
Score = 52.4 bits (125), Expect = 1e-07
Identities = 26/186 (13%), Positives = 52/186 (27%), Gaps = 30/186 (16%)
Query: 128 VLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDG---------TGTVMSN 178
V + PP++ + + + L W G V ++
Sbjct: 2 VTIEAVPPQVAEDN--------NVLLLV-HNLPLALGAFAWYKGNTTAIDKEIARFVPNS 52
Query: 179 VRVTEEASVDGRRTTVKS-TLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPK 237
+ GR + +L+ +T + R + + + +
Sbjct: 53 NMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQ 112
Query: 238 VQVSVIGSNRLV-EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT------ELYLT 290
+ V +N V E V L C + ++ +W N Q + T L +
Sbjct: 113 PFLQV--TNTTVKELDSVTLTCLSNDIGAN--IQWLFNSQSLQLTERMTLSQNNSILRID 168
Query: 291 NITRHQ 296
I R
Sbjct: 169 PIKRED 174
Score = 48.9 bits (116), Expect = 2e-06
Identities = 32/198 (16%), Positives = 50/198 (25%), Gaps = 56/198 (28%)
Query: 249 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA------------------------SA 284
E +V L + WY + S
Sbjct: 12 AEDNNVLLLVHNLPLAL-GAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSN 70
Query: 285 TELYLTNITR-----------HQHDSIVKCEVQVSVIG---------SNRLV-EGTDVRL 323
L IT ++ + V+ V +N V E V L
Sbjct: 71 GSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTL 130
Query: 324 YCKAEANPSHMKYRWYINDQPVPAAASAT------ELYLTNITRHQHDSIVKCEVHNDVG 377
C + ++ +W N Q + T L + I R CE+ N V
Sbjct: 131 TCLSNDIGAN--IQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQ-CEISNPVS 187
Query: 378 KSE-DSETLDVTYGPRFR 394
+S LD+ + P
Sbjct: 188 VRRSNSIKLDIIFDPHHH 205
Score = 42.7 bits (100), Expect = 2e-04
Identities = 26/197 (13%), Positives = 47/197 (23%), Gaps = 50/197 (25%)
Query: 401 QVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGN-----------------------SP 437
QV V LL W ++ +
Sbjct: 10 QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYS 69
Query: 438 NLTLLM---TSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARV 494
N +LL T D G Y + + A ++ T + + V
Sbjct: 70 NGSLLFQMITMKD-MGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSV 128
Query: 495 ECSAFSIPPPEKVTWSYRGEEI------------------GVGSSD--DYS--VHNDVGK 532
+ S + W + + + + D +Y + N V
Sbjct: 129 TLTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSV 188
Query: 533 SE-DSETLDVTYGPRFR 548
+S LD+ + P
Sbjct: 189 RRSNSIKLDIIFDPHHH 205
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 59.9 bits (145), Expect = 5e-11
Identities = 18/108 (16%), Positives = 30/108 (27%), Gaps = 8/108 (7%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTGVL---QWTKDDFALGPHRNLSGFDRYAMIGS--DEEG 88
+ +A G + L C + T + W + D L G+
Sbjct: 10 TGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGP 69
Query: 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPR 136
L + + ++D Y C T G + L VL
Sbjct: 70 GLGLTLQSLTVNDTGEYFCIYHTYPDG---TYTGRIFLEVLESSVAEH 114
Score = 41.8 bits (98), Expect = 1e-04
Identities = 15/92 (16%), Positives = 35/92 (38%), Gaps = 8/92 (8%)
Query: 640 GIPGDTARVECSAFSIPPPE--KVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKS----TL 693
G + ++C S + +V W + + + + ++D + K+ + L
Sbjct: 15 AEKGGSIILQCH-LSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGL 73
Query: 694 IIRESRHDHFGVYNCSVS-NPYGSDSVEIMLK 724
++ + G Y C P G+ + I L+
Sbjct: 74 TLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLE 105
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 59.2 bits (144), Expect = 5e-11
Identities = 24/104 (23%), Positives = 33/104 (31%), Gaps = 18/104 (17%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAMIGS 84
F + DQ+ G V + RV G V+ W ++ + P D+
Sbjct: 7 TFKVSLMDQSVREGQDVIMSIRV---QGEPKPVVSWLRNRQPVRP-------DQRRFAEE 56
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
E G L I D Y C+ G R A L V
Sbjct: 57 AEGGLCRLRILAAERGDAGFYTCKAVN-EYGA---RQCEARLEV 96
Score = 51.9 bits (125), Expect = 2e-08
Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 6/82 (7%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
G + P P V+W + + ++ + G L I +
Sbjct: 20 GQDVIMSIRVQGEPKP-VVSWLRNRQPV-RPDQRRFAEEAE----GGLCRLRILAAERGD 73
Query: 703 FGVYNCSVSNPYGSDSVEIMLK 724
G Y C N YG+ E L+
Sbjct: 74 AGFYTCKAVNEYGARQCEARLE 95
Score = 51.1 bits (123), Expect = 3e-08
Identities = 24/95 (25%), Positives = 34/95 (35%), Gaps = 13/95 (13%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVV----GNSPNLT 440
P F+ V G V + V G P P ++W + D + G L
Sbjct: 6 PTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLR 65
Query: 441 LLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKG 474
+L AG Y CKA G EA + ++G
Sbjct: 66 ILAAERGDAGFYTCKAVNEYG--ARQCEARLEVRG 98
Score = 51.1 bits (123), Expect = 3e-08
Identities = 24/95 (25%), Positives = 34/95 (35%), Gaps = 13/95 (13%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVV----GNSPNLT 594
P F+ V G V + V G P P ++W + D + G L
Sbjct: 6 PTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLR 65
Query: 595 LLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKG 628
+L AG Y CKA G EA + ++G
Sbjct: 66 ILAAERGDAGFYTCKAVNEYG--ARQCEARLEVRG 98
Score = 36.9 bits (86), Expect = 0.004
Identities = 18/82 (21%), Positives = 27/82 (32%), Gaps = 13/82 (15%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAAS---------ATELYLTNITRHQHDS 366
EG DV + + + P W N QPV L + R D+
Sbjct: 18 REGQDVIMSIRVQGEPK-PVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAER--GDA 74
Query: 367 -IVKCEVHNDVGKSEDSETLDV 387
C+ N+ G + L+V
Sbjct: 75 GFYTCKAVNEYGARQCEARLEV 96
Score = 33.4 bits (77), Expect = 0.064
Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 9/98 (9%)
Query: 134 PPRIVQG--DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRR 191
PP D E +++ + G+P ++W+ V + R E + G
Sbjct: 5 PPTFKVSLMDQ-SVREGQDVIMSI-RVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGL- 61
Query: 192 TTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLK 229
L + + +TC+A N ARL+
Sbjct: 62 ----CRLRILAAERGDAGFYTCKAVNEYGARQCEARLE 95
Score = 32.6 bits (75), Expect = 0.12
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 249 VEGTDVRLYCKAEANPSHMKYRWYINDQPV 278
EG DV + + + P W N QPV
Sbjct: 18 REGQDVIMSIRVQGEPK-PVVSWLRNRQPV 46
Score = 30.7 bits (70), Expect = 0.49
Identities = 6/43 (13%), Positives = 13/43 (30%), Gaps = 2/43 (4%)
Query: 489 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVG 531
G + P P V+W + + ++ + G
Sbjct: 20 GQDVIMSIRVQGEPKP-VVSWLRNRQPV-RPDQRRFAEEAEGG 60
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 58.9 bits (143), Expect = 6e-11
Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 8/97 (8%)
Query: 629 RPTIISHRTQFGIP-GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKE 687
+P I++ + I G T +E P P TW+ + + V
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPT-ATWTVGDSGAA--LAPELLVDAK---- 54
Query: 688 GIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
+++ ++ G Y V N G D +
Sbjct: 55 SSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVI 91
Score = 53.9 bits (130), Expect = 3e-09
Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 16/94 (17%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVVGNSPNLTLLM- 443
P+ +++ G NL D G P P TW + +V + T +
Sbjct: 3 PKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFF 62
Query: 444 ---TSDDLAGRYYCKASVMGFPEVG-AEATVYLK 473
D +G Y K E+G EA +
Sbjct: 63 PSAKRAD-SGNYKLKVKN----ELGEDEAIFEVI 91
Score = 53.9 bits (130), Expect = 3e-09
Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 16/94 (17%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVVGNSPNLTLLM- 597
P+ +++ G NL D G P P TW + +V + T +
Sbjct: 3 PKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFF 62
Query: 598 ---TSDDLAGRYYCKASVMGFPEVG-AEATVYLK 627
D +G Y K E+G EA +
Sbjct: 63 PSAKRAD-SGNYKLKVKN----ELGEDEAIFEVI 91
Score = 48.9 bits (117), Expect = 2e-07
Identities = 15/104 (14%), Positives = 23/104 (22%), Gaps = 19/104 (18%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAMIGS 84
K + G L G WT D + +
Sbjct: 4 KILTASRKIKIKAGFTHNLEVDF---IGAPDPTATWTVGD------SGAALAPELLV--D 52
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
+ S+ D Y+ +V LGE + V
Sbjct: 53 AKSSTTSIFFPSAKRADSGNYKLKVKN-ELGE---DEAIFEVIV 92
Score = 35.8 bits (83), Expect = 0.009
Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 14/84 (16%)
Query: 314 RLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA--------SATELYLTNITRHQHD 365
++ G L P W + D A S T ++ + R D
Sbjct: 13 KIKAGFTHNLEVDFIGAPDP-TATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKR--AD 69
Query: 366 S-IVKCEVHNDVGKSEDSETLDVT 388
S K +V N++G ED +V
Sbjct: 70 SGNYKLKVKNELG--EDEAIFEVI 91
Score = 33.8 bits (78), Expect = 0.035
Identities = 12/97 (12%), Positives = 25/97 (25%), Gaps = 8/97 (8%)
Query: 134 PPRIVQGDTLYT-TEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRT 192
P+I+ LE G P TW G + +A
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEV-DFIGAPDPTATWTVGDSGAALAPELLVDAKSS---- 56
Query: 193 TVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLK 229
+++ K + + + +N + +
Sbjct: 57 --TTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVI 91
Score = 31.9 bits (73), Expect = 0.17
Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 4/60 (6%)
Query: 475 RPTIISHRTQFGIP-GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKS 533
+P I++ + I G T +E P P TW+ + + V +
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPT-ATWTVGDSGA--ALAPELLVDAKSSTT 58
Score = 28.4 bits (64), Expect = 3.3
Identities = 5/34 (14%), Positives = 8/34 (23%), Gaps = 1/34 (2%)
Query: 247 RLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPA 280
++ G L P W + D
Sbjct: 13 KIKAGFTHNLEVDFIGAPDP-TATWTVGDSGAAL 45
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 61.4 bits (149), Expect = 7e-11
Identities = 29/200 (14%), Positives = 50/200 (25%), Gaps = 49/200 (24%)
Query: 33 EPQDQTAVVGSRVTLPCRVI-------------DKTGVLQWTKDDFALGPHRNLSGFDRY 79
+ A+ GS VTL +L++ + DR
Sbjct: 5 SVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFK--DRV 62
Query: 80 AMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQ 139
+ ++ +L IY V +D Y ++ + I T+ V P I
Sbjct: 63 DLDKTN----GALRIYNVSKEDRGDYYMRMLHETEDQWKI-----TMEVYEMVSKPMI-- 111
Query: 140 GDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLV 199
E L C G E+
Sbjct: 112 -----YWECSNATLTCEVLEG-TDVELKL-----------------YQGKEHLRSLRQKT 148
Query: 200 LTPKKEHHNTTFTCQAQNTA 219
++ + + F C+A N
Sbjct: 149 MSYQWTNLRAPFKCKAVNRV 168
Score = 43.3 bits (102), Expect = 8e-05
Identities = 18/164 (10%), Positives = 44/164 (26%), Gaps = 32/164 (19%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATE---------------------L 354
+ G++V L S+ + W L
Sbjct: 12 ITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGAL 71
Query: 355 YLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAG-VNLLCD 413
+ N+++ + + ++ + + T++V + L C+
Sbjct: 72 RIYNVSK-EDRGDYYMRMLHE-TEDQWKITMEVY------EMVSKPMIYWECSNATLTCE 123
Query: 414 VDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS 457
V E+ + + + T+ +L + CKA
Sbjct: 124 VLEGTDVELKLYQG--KEHLRSLRQKTMSYQWTNLRAPFKCKAV 165
Score = 43.0 bits (101), Expect = 1e-04
Identities = 27/193 (13%), Positives = 50/193 (25%), Gaps = 51/193 (26%)
Query: 551 PYSVQVDRGAGVNLLCDVD-GNPAPEITWIHEDSDKVVG--------------------N 589
+V G+ V L +TW+H + K++ +
Sbjct: 6 VPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLD 65
Query: 590 SPNLTLL---MTSDDLAGRYYCKASVMGFPEVGAEATVYLK-GRPTIISHRTQFGIPGDT 645
N L ++ +D G YY + + VY +P I
Sbjct: 66 KTNGALRIYNVSKED-RGDYYMRMLHETEDQWKITMEVYEMVSKPMIYWE-------CSN 117
Query: 646 ARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGV 705
A + C E + E L+ + T+ + +
Sbjct: 118 ATLTCEVLEGTDVE-LKLYQGKE---------------HLRSLRQKTMSYQWTNLR--AP 159
Query: 706 YNCSVSNPYGSDS 718
+ C N +S
Sbjct: 160 FKCKAVNRVSQES 172
Score = 39.5 bits (92), Expect = 0.002
Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 7/101 (6%)
Query: 288 YLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPA 347
Y+ + + + EV V E ++ L C+ + ++ + Y + +
Sbjct: 85 YMRMLHETEDQWKITMEVYEMVSKPMIYWECSNATLTCEVL-EGTDVELKLYQGKEHLR- 142
Query: 348 AASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVT 388
S + ++ + + KC+ N V S++SE V
Sbjct: 143 --SLRQKTMSYQWTNL-RAPFKCKAVNRV--SQESEMEVVN 178
Score = 31.8 bits (72), Expect = 0.59
Identities = 23/158 (14%), Positives = 40/158 (25%), Gaps = 34/158 (21%)
Query: 397 PYSVQVDRGAGVNLLCDVD-GNPAPEITWIHEDSDKVVG--------------------N 435
+V G+ V L +TW+H + K++ +
Sbjct: 6 VPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLD 65
Query: 436 SPNLTLL---MTSDDLAGRYYCKASVMGFPEVGAEATVYLK-GRPTIISHRTQFGIPGDT 491
N L ++ +D G YY + + VY +P I
Sbjct: 66 KTNGALRIYNVSKED-RGDYYMRMLHETEDQWKITMEVYEMVSKPMIYWE-------CSN 117
Query: 492 ARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHND 529
A + C E + E + S
Sbjct: 118 ATLTCEVLEGTDVE-LKLYQGKEHLRSLRQKTMSYQWT 154
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 59.3 bits (144), Expect = 7e-11
Identities = 17/105 (16%), Positives = 30/105 (28%), Gaps = 16/105 (15%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVI-DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEE 87
+ +D GS T CR+ + W D L + + + +
Sbjct: 15 HIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHAN------ELNEID-AQPG 67
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP 132
G + L + + L D + + A L V P
Sbjct: 68 GYHVLTLRQLALKDSGTIYFEAGD--------QRASAALRVTEKP 104
Score = 47.8 bits (114), Expect = 9e-07
Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 15/100 (15%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH-----EDSDKVV-----GNSPNLT 440
V V G+ C + + W ++ G LT
Sbjct: 14 VHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLT 73
Query: 441 LLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIIS 480
L + +G Y +A + A A + + +P++ S
Sbjct: 74 LRQLALKDSGTIYFEAG-----DQRASAALRVTEKPSVFS 108
Score = 47.8 bits (114), Expect = 9e-07
Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 15/100 (15%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH-----EDSDKVV-----GNSPNLT 594
V V G+ C + + W ++ G LT
Sbjct: 14 VHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLT 73
Query: 595 LLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIIS 634
L + +G Y +A + A A + + +P++ S
Sbjct: 74 LRQLALKDSGTIYFEAG-----DQRASAALRVTEKPSVFS 108
Score = 41.2 bits (97), Expect = 1e-04
Identities = 9/70 (12%), Positives = 18/70 (25%), Gaps = 6/70 (8%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
G +A C V W + +++ + G L +R+
Sbjct: 28 GSSATFRCRISPANYEP-VHWFLDKTPLH--ANELNEIDAQ---PGGYHVLTLRQLALKD 81
Query: 703 FGVYNCSVSN 712
G +
Sbjct: 82 SGTIYFEAGD 91
Score = 29.7 bits (67), Expect = 1.5
Identities = 8/52 (15%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 229 KLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPA 280
LV+ + + + EG+ C+ W+++ P+ A
Sbjct: 6 SGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYE-PVHWFLDKTPLHA 56
Score = 29.3 bits (66), Expect = 2.3
Identities = 6/45 (13%), Positives = 12/45 (26%), Gaps = 3/45 (6%)
Query: 489 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKS 533
G +A C V W + +++ + G
Sbjct: 28 GSSATFRCRISPANYEP-VHWFLDKTPL--HANELNEIDAQPGGY 69
Score = 29.3 bits (66), Expect = 2.5
Identities = 6/32 (18%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPA 347
EG+ C+ W+++ P+ A
Sbjct: 26 QEGSSATFRCRISPANYE-PVHWFLDKTPLHA 56
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 58.5 bits (142), Expect = 1e-10
Identities = 19/104 (18%), Positives = 28/104 (26%), Gaps = 17/104 (16%)
Query: 30 FAMEPQDQTAV-VGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEG 88
FA V G RV + D ++W K+ + P +Y +
Sbjct: 10 FAKILDPAYQVDKGGRVRFVVELADPKLEVKWYKNGQEIRPS------TKYIF--EHKGC 61
Query: 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP 132
L I + DD+ Y L V P
Sbjct: 62 QRILFINNCQMTDDSEYYVTAGD--------EKCSTELFVRSGP 97
Score = 46.2 bits (110), Expect = 2e-06
Identities = 15/70 (21%), Positives = 21/70 (30%), Gaps = 8/70 (11%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
G R + P E V W G+EI S Y G + L I +
Sbjct: 23 GGRVRFVVEL-ADPKLE-VKWYKNGQEIR--PSTKYIFEHK----GCQRILFINNCQMTD 74
Query: 703 FGVYNCSVSN 712
Y + +
Sbjct: 75 DSEYYVTAGD 84
Score = 39.7 bits (93), Expect = 4e-04
Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 16/98 (16%)
Query: 390 GPRF-RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVV----GNSPNL 439
G F + + QVD+G V + ++ +P E+ W S K + G L
Sbjct: 7 GAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRIL 65
Query: 440 TLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPT 477
+ YY A + ++++ P+
Sbjct: 66 FINNCQMTDDSEYYVTAG-----DEKCSTELFVRSGPS 98
Score = 39.7 bits (93), Expect = 4e-04
Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 16/98 (16%)
Query: 544 GPRF-RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVV----GNSPNL 593
G F + + QVD+G V + ++ +P E+ W S K + G L
Sbjct: 7 GAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRIL 65
Query: 594 TLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPT 631
+ YY A + ++++ P+
Sbjct: 66 FINNCQMTDDSEYYVTAG-----DEKCSTELFVRSGPS 98
Score = 30.4 bits (69), Expect = 0.73
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 4/41 (9%)
Query: 489 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHND 529
G R + P E V W G+EI S Y +
Sbjct: 23 GGRVRFVVEL-ADPKLE-VKWYKNGQEI--RPSTKYIFEHK 59
Score = 28.5 bits (64), Expect = 3.7
Identities = 12/105 (11%), Positives = 29/105 (27%), Gaps = 16/105 (15%)
Query: 134 PPRIVQG--DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRR 191
+ + + A+ P E+ W + + + E G
Sbjct: 7 GAAFAKILDPAYQVDKGGRVRFVVELAD--PKLEVKWYKNGQEIRPSTKYIFEH--KGC- 61
Query: 192 TTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAP 236
+ L + + ++ + A + T +L V+ P
Sbjct: 62 ---QRILFINNCQMTDDSEYYVTAGDEKCST------ELFVRSGP 97
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 61.4 bits (148), Expect = 1e-10
Identities = 32/196 (16%), Positives = 49/196 (25%), Gaps = 42/196 (21%)
Query: 553 SVQVDR-GAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTS--DDLAGRYYCK 609
V + V L CD A ITW + + S D G Y CK
Sbjct: 11 KVYDYQEDGSVLLTCDA---EAKNITWFKDGKMIGFLTEDKKKWNLGSNAKDPRGMYQCK 67
Query: 610 AS-----------VMGFPEVGAEATVYLKGRPTIISHRT----------------QFGIP 642
S MG + + + + + I
Sbjct: 68 GSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSIS 127
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
G T + C + P ++ W + + IG D + S +
Sbjct: 128 GTTVILTCPQY---PGSEILWQHNDKNIGGDEDDKNI------GSDEDHLSLKEFSELEQ 178
Query: 703 FGVYNCSVSNPYGSDS 718
G Y C D+
Sbjct: 179 SGYYVCYPRGSKPEDA 194
Score = 45.7 bits (107), Expect = 2e-05
Identities = 27/161 (16%), Positives = 42/161 (26%), Gaps = 36/161 (22%)
Query: 399 SVQVDR-GAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTS--DDLAGRYYCK 455
V + V L CD A ITW + + S D G Y CK
Sbjct: 11 KVYDYQEDGSVLLTCDA---EAKNITWFKDGKMIGFLTEDKKKWNLGSNAKDPRGMYQCK 67
Query: 456 AS-----------VMGFPEVGAEATVYLKGRPTIISHRT----------------QFGIP 488
S MG + + + + + I
Sbjct: 68 GSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSIS 127
Query: 489 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHND 529
G T + C P ++ W + + IG D ++
Sbjct: 128 GTTVILTCPQ---YPGSEILWQHNDKNIGGDEDDKNIGSDE 165
Score = 42.6 bits (99), Expect = 2e-04
Identities = 31/198 (15%), Positives = 50/198 (25%), Gaps = 50/198 (25%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDV 376
E V L C AEA W+ + + + + + + +C+ +
Sbjct: 17 EDGSVLLTCDAEAKN----ITWFKDGKMIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNK 72
Query: 377 GKSED------------SETLDVTYGPRFRARPYSVQVDR---------------GAGVN 409
K + + A+ + G V
Sbjct: 73 SKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVI 132
Query: 410 LLCDVDGNPAPEITW------IHEDSDKVVGNSPNLTLLMTS----DDLAGRYYCKASVM 459
L C P EI W I D D S L + + +G Y C
Sbjct: 133 LTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQ-SGYYVCYPR-- 187
Query: 460 GFPEVG--AEATVYLKGR 475
A +YL+ R
Sbjct: 188 --GSKPEDANFYLYLRAR 203
Score = 39.5 bits (91), Expect = 0.002
Identities = 31/212 (14%), Positives = 48/212 (22%), Gaps = 57/212 (26%)
Query: 147 EDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEH 206
ED + L C ITW + T K L +
Sbjct: 17 EDGSVLLTC----DAEAKNITWFKDGKMIGFL-------------TEDKKKWNLGSNAKD 59
Query: 207 HNTTFTCQAQNTADRTYKV----------ARLKLLVKYAPKVQVSVIGSNRL-------- 248
+ C+ + +V + A K GS+
Sbjct: 60 PRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQ 119
Query: 249 ------VEGTDVRLYCKAEANPSHMKYRWYINDQPVPA-------AASATELYLTNITRH 295
+ GT V L C W ND+ + + L L +
Sbjct: 120 TPYKVSISGTTVILTCPQYPGSE---ILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSEL 176
Query: 296 QHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKA 327
+ C E + LY +A
Sbjct: 177 EQSGYYVCYP------RGSKPEDANFYLYLRA 202
Score = 38.3 bits (88), Expect = 0.005
Identities = 31/200 (15%), Positives = 47/200 (23%), Gaps = 49/200 (24%)
Query: 42 GSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDD 101
V L C K + W KD MIG E + D
Sbjct: 18 DGSVLLTCDAEAKN--ITWFKDG---------------KMIGFLTEDKKKWNLGSNAKDP 60
Query: 102 DARYQCQVSTGI---------LGEPAIRSRFATLTVLVP------------PDPPRIVQG 140
YQC+ S +G + A + I Q
Sbjct: 61 RGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQT 120
Query: 141 DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVL 200
+ + L C P +EI W + + S + L L
Sbjct: 121 PYKVSISGTTVILTCPQ---YPGSEILWQHNDKNIGGDEDDKNIGSDED-------HLSL 170
Query: 201 TPKKEHHNT-TFTCQAQNTA 219
E + + C + +
Sbjct: 171 KEFSELEQSGYYVCYPRGSK 190
Score = 34.9 bits (79), Expect = 0.079
Identities = 16/108 (14%), Positives = 31/108 (28%), Gaps = 14/108 (12%)
Query: 24 QYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIG 83
E + + ++ G+ V L C + W +D +G +
Sbjct: 110 GNEEMGGITQTPYKVSISGTTVILTCPQ-YPGSEILWQHNDKNIGGDEDDK--------- 159
Query: 84 SDEEGDYSLEIYPV-MLDDDARYQCQVSTGILGEPAIRSRFATLTVLV 130
+ + L + L+ Y C G E + + L V
Sbjct: 160 NIGSDEDHLSLKEFSELEQSGYYVC-YPRGSKPE--DANFYLYLRARV 204
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 58.1 bits (141), Expect = 1e-10
Identities = 11/100 (11%), Positives = 21/100 (21%), Gaps = 16/100 (16%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEG 88
+ VG + + QW L + ++
Sbjct: 7 EVEKPLYGVEVFVGETAHFEIELSEPDVHGQWKLKGQPLAAS------PDCEI--IEDGK 58
Query: 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
+ L ++ L Q + A L V
Sbjct: 59 KHILILHNCQLGMTGEVSFQAANT--------KSAANLKV 90
Score = 48.8 bits (117), Expect = 2e-07
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
G+TA E S P W +G+ + +S D ++ED G K LI+ +
Sbjct: 20 GETAHFEIE-LSEPDVH-GQWKLKGQPLA--ASPDCEIIED----GKKHILILHNCQLGM 71
Query: 703 FGVYNCSVSN 712
G + +N
Sbjct: 72 TGEVSFQAAN 81
Score = 40.4 bits (95), Expect = 2e-04
Identities = 12/75 (16%), Positives = 19/75 (25%), Gaps = 10/75 (13%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVV----GNSPNLTL 441
Y V+V G + ++ P W + S G L L
Sbjct: 6 IEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILIL 64
Query: 442 LMTSDDLAGRYYCKA 456
+ G +A
Sbjct: 65 HNCQLGMTGEVSFQA 79
Score = 40.4 bits (95), Expect = 2e-04
Identities = 12/75 (16%), Positives = 19/75 (25%), Gaps = 10/75 (13%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVV----GNSPNLTL 595
Y V+V G + ++ P W + S G L L
Sbjct: 6 IEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILIL 64
Query: 596 LMTSDDLAGRYYCKA 610
+ G +A
Sbjct: 65 HNCQLGMTGEVSFQA 79
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 57.8 bits (140), Expect = 1e-10
Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 10/95 (10%)
Query: 630 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688
P I+ Q TA ++C A P P ++W G G ++ E
Sbjct: 9 PIILQGPANQTLAVDGTALLKCKATGDPLPV-ISWLKEGFTF-PGRDPRATIQEQ----- 61
Query: 689 IKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723
TL I+ R G Y C ++ G S +L
Sbjct: 62 --GTLQIKNLRISDTGTYTCVATSSSGETSWSAVL 94
Score = 55.5 bits (134), Expect = 1e-09
Identities = 25/114 (21%), Positives = 36/114 (31%), Gaps = 21/114 (18%)
Query: 20 GSLAQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSG 75
GS P +QT V L C+ TG + W K+ F
Sbjct: 1 GSSGSSGPPIILQGPANQTLAVDGTALLKCKA---TGDPLPVISWLKEGFTFPGRD---- 53
Query: 76 FDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVL 129
R + +L+I + + D Y C ++ GE S A L V
Sbjct: 54 -PRATIQEQG-----TLQIKNLRISDTGTYTCVATSS-SGE---TSWSAVLDVT 97
Score = 51.6 bits (124), Expect = 2e-08
Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 11/76 (14%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLL-------- 442
P P + + L C G+P P I+W+ + G P T+
Sbjct: 9 PIILQGPANQTLAVDGTALLKCKATGDPLPVISWLK-EGFTFPGRDPRATIQEQGTLQIK 67
Query: 443 -MTSDDLAGRYYCKAS 457
+ D G Y C A+
Sbjct: 68 NLRISD-TGTYTCVAT 82
Score = 51.6 bits (124), Expect = 2e-08
Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 11/76 (14%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLL-------- 596
P P + + L C G+P P I+W+ + G P T+
Sbjct: 9 PIILQGPANQTLAVDGTALLKCKATGDPLPVISWLK-EGFTFPGRDPRATIQEQGTLQIK 67
Query: 597 -MTSDDLAGRYYCKAS 611
+ D G Y C A+
Sbjct: 68 NLRISD-TGTYTCVAT 82
Score = 47.0 bits (112), Expect = 1e-06
Identities = 26/103 (25%), Positives = 37/103 (35%), Gaps = 12/103 (11%)
Query: 128 VLVPPDPPRIVQG-DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEAS 186
PP I+QG D L+C A G P I+W+ T
Sbjct: 2 SSGSSGPPIILQGPANQTLAVDGTALLKC-KATGDPLPVISWLKEGFTFPGR-------- 52
Query: 187 VDGRRTTVKS-TLVLTPKKEHHNTTFTCQAQNTADRTYKVARL 228
D R T + TL + + T+TC A +++ T A L
Sbjct: 53 -DPRATIQEQGTLQIKNLRISDTGTYTCVATSSSGETSWSAVL 94
Score = 36.6 bits (85), Expect = 0.005
Identities = 18/81 (22%), Positives = 25/81 (30%), Gaps = 10/81 (12%)
Query: 315 LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATE------LYLTNITRHQHDS-I 367
L L CKA +P W P L + N+ D+
Sbjct: 20 LAVDGTALLKCKATGDPLP-VISWLKEGFTFPGRDPRATIQEQGTLQIKNLR--ISDTGT 76
Query: 368 VKCEVHNDVGKSEDSETLDVT 388
C + G++ S LDVT
Sbjct: 77 YTCVATSSSGETSWSAVLDVT 97
Score = 35.1 bits (81), Expect = 0.020
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Query: 476 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHND 529
P I+ Q TA ++C A P P ++W G G ++
Sbjct: 9 PIILQGPANQTLAVDGTALLKCKATGDPLPV-ISWLKEGFTF-PGRDPRATIQEQ 61
Score = 31.6 bits (72), Expect = 0.24
Identities = 8/36 (22%), Positives = 9/36 (25%), Gaps = 1/36 (2%)
Query: 248 LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAAS 283
L L CKA +P W P
Sbjct: 20 LAVDGTALLKCKATGDPLP-VISWLKEGFTFPGRDP 54
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 58.3 bits (141), Expect = 2e-10
Identities = 28/115 (24%), Positives = 43/115 (37%), Gaps = 19/115 (16%)
Query: 34 PQDQTAVVGSRVTLPCRV----IDKTGVLQ--WTKDDFA---------LGPHRNLSGFDR 78
P +G VTLPC + ++ T V Q W + + GP + S
Sbjct: 7 PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLE 66
Query: 79 YAMIGSDEE-GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP 132
+ E + SL ++ + ++D+ Y C T G RS L VL P
Sbjct: 67 FVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQG---SRSVDIWLRVLAKP 118
Score = 29.0 bits (65), Expect = 3.2
Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 17/102 (16%)
Query: 640 GIPGDTARVECSAFSIPPP----EKVTWSYRGEEIGV-----------GSSDDYSVLEDP 684
G GD+ + C ++TW+ GE + S +
Sbjct: 12 GFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAAR 71
Query: 685 LKEGIKS-TLIIRESRHDHFGVYNCSVSN-PYGSDSVEIMLK 724
L +++ +L + R + G Y C P GS SV+I L+
Sbjct: 72 LGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLR 113
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta
barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 58.4 bits (141), Expect = 2e-10
Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 14/88 (15%)
Query: 38 TAVVGSRVTLPCRVIDKTG---VLQWTKDDFAL-----------GPHRNLSGFDRYAMIG 83
+G VTLPC + + + W K G +Y ++G
Sbjct: 7 IGFLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLLG 66
Query: 84 SDEEGDYSLEIYPVMLDDDARYQCQVST 111
+ G+ SL I D Y C++
Sbjct: 67 KVQFGEVSLTISNTNRGDSGVYCCRIEV 94
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 57.3 bits (139), Expect = 2e-10
Identities = 12/67 (17%), Positives = 22/67 (32%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAG 450
+ P S ++ G+ + L C G+P P W + + + G
Sbjct: 4 LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQG 63
Query: 451 RYYCKAS 457
Y+C
Sbjct: 64 TYWCHVY 70
Score = 57.3 bits (139), Expect = 2e-10
Identities = 12/67 (17%), Positives = 22/67 (32%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAG 604
+ P S ++ G+ + L C G+P P W + + + G
Sbjct: 4 LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQG 63
Query: 605 RYYCKAS 611
Y+C
Sbjct: 64 TYWCHVY 70
Score = 50.8 bits (122), Expect = 4e-08
Identities = 24/105 (22%), Positives = 37/105 (35%), Gaps = 20/105 (19%)
Query: 629 RPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKE 687
+ I +Q +PG T ++C A P P W ++ E PL
Sbjct: 3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPH-YQW-FKNEL--------------PLTH 46
Query: 688 GIKSTLIIRESRHDHFGVYNCSVSNPYG---SDSVEIMLKPQKSF 729
K ++ +H G Y C V N S VEI++ +
Sbjct: 47 ETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNL 91
Score = 48.9 bits (117), Expect = 2e-07
Identities = 19/109 (17%), Positives = 31/109 (28%), Gaps = 27/109 (24%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
+ +EP Q + GS + L C G QW K++ L
Sbjct: 5 QICVEPTSQKLMPGSTLVLQCVA---VGSPIPHYQWFKNELPL----------------- 44
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD 133
E + V L+ Y C V S+ + + +
Sbjct: 45 THETKKLYMVPYVDLEHQGTYWCHVY-NDRDS--QDSKKVEIIIDELNN 90
Score = 47.7 bits (114), Expect = 5e-07
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 315 LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHN 374
L+ G+ + L C A +P Y+W+ N+ P+ + + +H C V+N
Sbjct: 15 LMPGSTLVLQCVAVGSPIP-HYQWFKNELPLTHETKKL-YMVPYVDL-EHQGTYWCHVYN 71
Query: 375 DVGKSEDSETLDVT 388
D S+DS+ +++
Sbjct: 72 DRD-SQDSKKVEII 84
Score = 40.0 bits (94), Expect = 3e-04
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 248 LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITR 294
L+ G+ + L C A +P Y+W+ N+ P+ + +
Sbjct: 15 LMPGSTLVLQCVAVGSPIP-HYQWFKNELPLTHETKKL-YMVPYVDL 59
Score = 35.8 bits (83), Expect = 0.008
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Query: 475 RPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHN 528
+ I +Q +PG T ++C A P P W + + Y V
Sbjct: 3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPH-YQWFKNELPLTHETKKLYMVPY 56
Score = 33.5 bits (77), Expect = 0.058
Identities = 19/101 (18%), Positives = 30/101 (29%), Gaps = 26/101 (25%)
Query: 124 ATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVT 182
+ L + V P +++ G TL L+C A G P W + +T
Sbjct: 2 SKLQICVEPTSQKLMPGSTL--------VLQC-VAVGSPIPHYQWFKNEL-------PLT 45
Query: 183 EEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTY 223
E ++ H T+ C N D
Sbjct: 46 HETK---------KLYMVPYVDLEHQGTYWCHVYNDRDSQD 77
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 61.8 bits (149), Expect = 2e-10
Identities = 37/248 (14%), Positives = 74/248 (29%), Gaps = 24/248 (9%)
Query: 312 SNRLVEGTDVRLYCKAEAN---PSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIV 368
+ G L + PS++ Y W +DQP + L + + T S
Sbjct: 11 KRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTAT--LTVADATSENAGSY- 67
Query: 369 KCEVHNDVGKSE-DSETLDVTYGPR--FRARPYSVQVDRGAGVNLLCDVD---GNPAPEI 422
K V + + +SE + P V V L V G +
Sbjct: 68 KVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADN 127
Query: 423 TWIH---EDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTII 479
+H + V+ + ++T+ + D G Y K + A A+ + +
Sbjct: 128 YELHYSWSKGEDVIDTTQDITIQEFTADKNGVYTVKVWG-ESEDSAASASTKIMLATMNV 186
Query: 480 SHRTQFGI---PGDTARVECSAFSIPPPE-----KVTWSYRGEEIGVGSSDDYSVHNDVG 531
G+ + + +T Y G + ++VG
Sbjct: 187 DQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVG 246
Query: 532 KSEDSETL 539
++ + ++
Sbjct: 247 EALEGFSI 254
Score = 61.4 bits (148), Expect = 4e-10
Identities = 35/264 (13%), Positives = 70/264 (26%), Gaps = 52/264 (19%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRVIDKTGVL-----QWTKDDFALGPHRNLSGFDRYAMIGS 84
+++ + + G TL V + WTKDD
Sbjct: 5 VSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPH----------------- 47
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLY 144
E +L + ++ Y+ V + I + Y
Sbjct: 48 -ENNTATLTVADATSENAGSYKVTV-QDTDTM--TSVESEVFLMEEAELIVNITEPQHFY 103
Query: 145 TTEDREIELEC--ISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTP 202
+ ++EL + GK PA+ + S + +
Sbjct: 104 VSSQTDVELHATVKFSGGKTPADNYEL------------HYSWSKGEDVIDTTQDITIQE 151
Query: 203 KKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAP-KVQVSVIGSNRLVEGTDVRLYCKAE 261
N +T + ++ + A + A V V+ S + G ++ L
Sbjct: 152 FTADKNGVYTVKVWGESEDSAASAS--TKIMLATMNVDQDVVESKTVALGNEISLNYVVS 209
Query: 262 AN---------PSHMKYRWYINDQ 276
+ +KY WY+ +
Sbjct: 210 EDIVGDSSGMPNLTIKYNWYLQRE 233
Score = 56.4 bits (135), Expect = 1e-08
Identities = 36/299 (12%), Positives = 73/299 (24%), Gaps = 42/299 (14%)
Query: 476 PTIISH-RTQFGIPGDTARVECSAFSIPPPEK---VTWSYRGEEIGVGSSD--------- 522
T+ + + GD + + P TW+ + ++
Sbjct: 3 FTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTATLTVADATSE 62
Query: 523 ---DYSVH--NDVGKSE-DSETLDVTYGPR--FRARPYSVQVDRGAGVNLLCDVD---GN 571
Y V + + +SE + P V V L V G
Sbjct: 63 NAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGK 122
Query: 572 PAPEITWIH---EDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKG 628
+ +H + V+ + ++T+ + D G Y K + A A+ +
Sbjct: 123 TPADNYELHYSWSKGEDVIDTTQDITIQEFTADKNGVYTVKVWG-ESEDSAASASTKIML 181
Query: 629 RPTIISHRTQFGI---PGDTARVECSAFSI---------PPPEKVTWSYRGEEIGVGSSD 676
+ G+ + K W + E +
Sbjct: 182 ATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLI 241
Query: 677 DYSVLEDPLKEGIKS--TLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFPLLL 733
V E I L + +D + C + + + S +
Sbjct: 242 GSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIEDETVEVAASTSRKCSM 300
Score = 55.2 bits (132), Expect = 3e-08
Identities = 38/279 (13%), Positives = 78/279 (27%), Gaps = 59/279 (21%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGN-PAPE---ITWIHEDSDKVVGNSPNLTLLMTSD 446
+ G G L V G+ P P TW D N+ LT+ +
Sbjct: 3 FTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTK-DDQPHENNTATLTVADATS 61
Query: 447 DLAGRYYCKASVM-GFPEVGAEATVYLKGRPTIISHRT--QFGIPGDTARVECS---AFS 500
+ AG Y V +E + + + + + + +
Sbjct: 62 ENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGG 121
Query: 501 IPPPEKVTWSY---RGEEIGVGSSD------------DYS--VHNDVGKSEDSETLDVTY 543
P + Y +GE++ + D Y+ V + S S + +
Sbjct: 122 KTPADNYELHYSWSKGEDVIDTTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIML 181
Query: 544 GPRFRARPY----------SVQVDRGAGVNLLCDVDGNPAPEITWI-------------- 579
+ + ++ +++ D G P I +
Sbjct: 182 ATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLI 241
Query: 580 ---HEDSDKVVGNSPNLTLLM---TSDDLAGRYYCKASV 612
++ + +P+ L T DD +++C A +
Sbjct: 242 GSEVGEALEGFSITPDGHLFKESATYDD-TAKFWCVAKL 279
Score = 42.9 bits (100), Expect = 3e-04
Identities = 25/170 (14%), Positives = 50/170 (29%), Gaps = 36/170 (21%)
Query: 127 TVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAE---ITWIDGTGTVMSNVRVTE 183
TV + + + GD L A +P TW
Sbjct: 4 TVSIQSNKRCFLAGDG--------FTLTATVAGDEPLPSNLTYTW--------------- 40
Query: 184 EASVDGRR-TTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSV 242
+ D + +TL + + ++ Q+T T + + L+ + V ++
Sbjct: 41 --TKDDQPHENNTATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITE 98
Query: 243 IGSNRLVEGTDVRLYCKAE-------ANPSHMKYRWYINDQPVPAAASAT 285
+ TDV L+ + A+ + Y W + + T
Sbjct: 99 PQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQDIT 148
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 56.9 bits (138), Expect = 3e-10
Identities = 24/97 (24%), Positives = 31/97 (31%), Gaps = 7/97 (7%)
Query: 382 SETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVVGN 435
S + + P F + V G L C V G P P ITW I
Sbjct: 3 SGSSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAG 62
Query: 436 SPNLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVY 471
L + + G Y C A +G A TV+
Sbjct: 63 VAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTVH 99
Score = 56.9 bits (138), Expect = 3e-10
Identities = 24/97 (24%), Positives = 31/97 (31%), Gaps = 7/97 (7%)
Query: 536 SETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVVGN 589
S + + P F + V G L C V G P P ITW I
Sbjct: 3 SGSSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAG 62
Query: 590 SPNLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVY 625
L + + G Y C A +G A TV+
Sbjct: 63 VAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTVH 99
Score = 54.3 bits (131), Expect = 3e-09
Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 22/104 (21%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
F+ +D + G L C V G + W + + R+ +
Sbjct: 13 SFSSVLKDCAVIEGQDFVLQCSV---RGTPVPRITWLLNGQPIQYARS-----------T 58
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
E G L I + +D Y C ++ LG+ + A +TV
Sbjct: 59 CEAGVAELHIQDALPEDHGTYTC-LAENALGQ--VSCS-AWVTV 98
Score = 48.5 bits (116), Expect = 3e-07
Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 11/107 (10%)
Query: 619 GAEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDD 677
G+ + ++ P+ S + I G ++CS P P ++TW G+ I
Sbjct: 1 GSSGSSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVP-RITWLLNGQPI---QYAR 56
Query: 678 YSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
+ + L I+++ + G Y C N G S +
Sbjct: 57 STCEAG------VAELHIQDALPEDHGTYTCLAENALGQVSCSAWVT 97
Score = 39.6 bits (93), Expect = 4e-04
Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 9/78 (11%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATE-----LYLTNITRHQHDS-IVK 369
+EG D L C P + W +N QP+ A S E L++ + D
Sbjct: 24 IEGQDFVLQCSVRGTP-VPRITWLLNGQPIQYARSTCEAGVAELHIQDAL--PEDHGTYT 80
Query: 370 CEVHNDVGKSEDSETLDV 387
C N +G+ S + V
Sbjct: 81 CLAENALGQVSCSAWVTV 98
Score = 34.6 bits (80), Expect = 0.022
Identities = 21/110 (19%), Positives = 38/110 (34%), Gaps = 20/110 (18%)
Query: 124 ATLTVLVPPD---PPRIVQGDTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNV 179
+ + V P + D E ++ L+C S G P ITW+ +G +
Sbjct: 4 GSSGMEVAPSFSSVLK----DC-AVIEGQDFVLQC-SVRGTPVPRITWLLNG-----QPI 52
Query: 180 RVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLK 229
+ G + L + + T+TC A+N + A +
Sbjct: 53 QYARSTCEAGV-----AELHIQDALPEDHGTYTCLAENALGQVSCSAWVT 97
Score = 31.9 bits (73), Expect = 0.19
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 232 VKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVP 279
++ AP SV+ ++EG D L C P + W +N QP+
Sbjct: 8 MEVAPSF-SSVLKDCAVIEGQDFVLQCSVRGTP-VPRITWLLNGQPIQ 53
Score = 31.5 bits (72), Expect = 0.27
Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 23/99 (23%)
Query: 465 GAEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEI------- 516
G+ + ++ P+ S + I G ++CS P P ++TW G+ I
Sbjct: 1 GSSGSSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVP-RITWLLNGQPIQYARSTC 59
Query: 517 ----------GVGSSDD--YSV--HNDVGKSEDSETLDV 541
D Y+ N +G+ S + V
Sbjct: 60 EAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 62.4 bits (152), Expect = 3e-10
Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 11/98 (11%)
Query: 629 RPTIISHRTQ--FGIPGDTARVECSAFSIPPPEKVTW-SYRGEEIGVGSSDDYSVLEDPL 685
R I + Q F G T + C A PPP + W S R + S+ +V D
Sbjct: 384 RARIRDRKAQQVFVDEGHTVQFVCRADGDPPPA-ILWLSPRKHLVSAKSNGRLTVFPD-- 440
Query: 686 KEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723
TL +R ++ G Y C +N G+DS+ L
Sbjct: 441 -----GTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHL 473
Score = 46.6 bits (111), Expect = 4e-05
Identities = 20/93 (21%), Positives = 27/93 (29%), Gaps = 11/93 (11%)
Query: 375 DVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG 434
D + V VD G V +C DG+P P I W+ +V
Sbjct: 370 DFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLS-PRKHLVS 428
Query: 435 NSPN----------LTLLMTSDDLAGRYYCKAS 457
N L + G Y C A+
Sbjct: 429 AKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAA 461
Score = 46.6 bits (111), Expect = 4e-05
Identities = 20/93 (21%), Positives = 27/93 (29%), Gaps = 11/93 (11%)
Query: 529 DVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG 588
D + V VD G V +C DG+P P I W+ +V
Sbjct: 370 DFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLS-PRKHLVS 428
Query: 589 NSPN----------LTLLMTSDDLAGRYYCKAS 611
N L + G Y C A+
Sbjct: 429 AKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAA 461
Score = 43.2 bits (102), Expect = 3e-04
Identities = 23/100 (23%), Positives = 35/100 (35%), Gaps = 13/100 (13%)
Query: 133 DPPRIV--QGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGR 190
RI + ++ E ++ C A+G PP I W+ ++S
Sbjct: 383 RRARIRDRKAQQVFVDEGHTVQFVC-RADGDPPPAILWLSPRKHLVSA--------KSNG 433
Query: 191 RTTVKS--TLVLTPKKEHHNTTFTCQAQNTADRTYKVARL 228
R TV TL + + N T+ C A N A L
Sbjct: 434 RLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHL 473
Score = 37.0 bits (86), Expect = 0.027
Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 13/97 (13%)
Query: 33 EPQDQTAVVGSRVTLPCRVI-DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYS 91
+ Q G V CR D + W + R + +G +
Sbjct: 391 KAQQVFVDEGHTVQFVCRADGDPPPAILWLSPR---KHLVSAKSNGRLTV---FPDG--T 442
Query: 92 LEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
LE+ + D+ Y C ++ G S A L V
Sbjct: 443 LEVRYAQVQDNGTYLC-IAANAGGN---DSMPAHLHV 475
Score = 35.8 bits (83), Expect = 0.080
Identities = 17/112 (15%), Positives = 31/112 (27%), Gaps = 13/112 (11%)
Query: 288 YLTNITRHQHDSIVKCE---VQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQP 344
+ + C ++ + EG V+ C+A+ +P W +
Sbjct: 367 EFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPP-PAILWLSPRKH 425
Query: 345 VPAAASATE--------LYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVT 388
+ +A S L + Q + C N G L V
Sbjct: 426 LVSAKSNGRLTVFPDGTLEVRYAQV-QDNGTYLCIAANAGGNDSMPAHLHVR 476
Score = 32.4 bits (74), Expect = 0.73
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 475 RPTIISHRTQ--FGIPGDTARVECSAFSIPPPEKVTW-SYRGEEIGVGSSDDYSVHND 529
R I + Q F G T + C A PPP + W S R + S+ +V D
Sbjct: 384 RARIRDRKAQQVFVDEGHTVQFVCRADGDPPPA-ILWLSPRKHLVSAKSNGRLTVFPD 440
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 56.5 bits (137), Expect = 5e-10
Identities = 17/86 (19%), Positives = 23/86 (26%), Gaps = 14/86 (16%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
K Q QT GS RV G +W K+ +
Sbjct: 7 KIFERIQSQTVGQGSDAHFRVRV---VGKPDPECEWYKNGVKIER-------SDRIYWYW 56
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVS 110
E+ L I V +D A +
Sbjct: 57 PEDNVCELVIRDVTGEDSASIMVKAI 82
Score = 53.4 bits (129), Expect = 5e-09
Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 17/98 (17%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDL-- 448
P+ R S V +G+ + V G P PE W + S + D++
Sbjct: 6 PKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKN--GVKIERSDRIYWYWPEDNVCE 63
Query: 449 ----------AGRYYCKAS-VMGFPEVGAEATVYLKGR 475
+ KA + G E + A + ++ +
Sbjct: 64 LVIRDVTGEDSASIMVKAINIAG--ETSSHAFLLVQAK 99
Score = 53.4 bits (129), Expect = 5e-09
Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 17/98 (17%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDL-- 602
P+ R S V +G+ + V G P PE W + S + D++
Sbjct: 6 PKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKN--GVKIERSDRIYWYWPEDNVCE 63
Query: 603 ----------AGRYYCKAS-VMGFPEVGAEATVYLKGR 629
+ KA + G E + A + ++ +
Sbjct: 64 LVIRDVTGEDSASIMVKAINIAG--ETSSHAFLLVQAK 99
Score = 53.4 bits (129), Expect = 7e-09
Identities = 21/96 (21%), Positives = 27/96 (28%), Gaps = 7/96 (7%)
Query: 630 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688
P I ++Q G A P PE W G +I SD E
Sbjct: 6 PKIFERIQSQTVGQGSDAHFRVRVVGKPDPE-CEWYKNGVKIE--RSDRIYWYWP---ED 59
Query: 689 IKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
L+IR+ + N G S L
Sbjct: 60 NVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLL 95
Score = 31.5 bits (72), Expect = 0.31
Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 13/82 (15%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT---------ELYLTNITRHQHDS 366
+G+D + P + WY N + + EL + ++T DS
Sbjct: 18 GQGSDAHFRVRVVGKPD-PECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVT--GEDS 74
Query: 367 -IVKCEVHNDVGKSEDSETLDV 387
+ + N G++ L V
Sbjct: 75 ASIMVKAINIAGETSSHAFLLV 96
Score = 30.7 bits (70), Expect = 0.54
Identities = 17/97 (17%), Positives = 29/97 (29%), Gaps = 7/97 (7%)
Query: 134 PPRIVQG-DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRT 192
P+I + + + + GKP E W + + R+ D
Sbjct: 5 APKIFERIQSQTVGQGSDAHFRV-RVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNV-- 61
Query: 193 TVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLK 229
LV+ + + +A N A T A L
Sbjct: 62 ---CELVIRDVTGEDSASIMVKAINIAGETSSHAFLL 95
Score = 29.2 bits (66), Expect = 2.1
Identities = 13/55 (23%), Positives = 17/55 (30%), Gaps = 4/55 (7%)
Query: 476 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHND 529
P I ++Q G A P PE W G +I SD +
Sbjct: 6 PKIFERIQSQTVGQGSDAHFRVRVVGKPDPE-CEWYKNGVKI--ERSDRIYWYWP 57
Score = 28.0 bits (63), Expect = 5.5
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 235 APKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPV 278
APK+ I S + +G+D + P + WY N +
Sbjct: 5 APKI-FERIQSQTVGQGSDAHFRVRVVGKPD-PECEWYKNGVKI 46
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 56.9 bits (137), Expect = 5e-10
Identities = 21/87 (24%), Positives = 27/87 (31%), Gaps = 15/87 (17%)
Query: 38 TAVVGSRVTLPCRV----IDKTGVLQWTKDDFAL-----------GPHRNLSGFDRYAMI 82
VG LPC + W K + RY +
Sbjct: 5 KVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLK 64
Query: 83 GSDEEGDYSLEIYPVMLDDDARYQCQV 109
G +GD SL I V LDD Y C++
Sbjct: 65 GDLNKGDVSLIIKNVTLDDHGTYCCRI 91
Score = 30.7 bits (69), Expect = 0.62
Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 21/89 (23%)
Query: 643 GDTARVECSAFSIPPPEK---VTW---------------SYRGEEIGVGSSDDYSVLEDP 684
G A + CS +++P + W + S Y + D
Sbjct: 9 GKNAYLPCS-YTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDL 67
Query: 685 LKEGIKSTLIIRESRHDHFGVYNCSVSNP 713
K + +LII+ D G Y C + P
Sbjct: 68 NKGDV--SLIIKNVTLDDHGTYCCRIQFP 94
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 56.6 bits (136), Expect = 6e-10
Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 4/92 (4%)
Query: 630 PTIISH-RTQFGIPGDTARVECSAFSIP-PPEKVTWSYRGEEIGVGSSDDYSVLEDPLKE 687
P I TQ I G CSA S P W E + ++Y+ L E
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70
Query: 688 GIK--STLIIRESRHDHFGVYNCSVSNPYGSD 717
++ + L +R G Y C +SN +GS
Sbjct: 71 LMEYTTILRLRNVEFTSEGXYQCVISNHFGSS 102
Score = 52.0 bits (124), Expect = 3e-08
Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 6/103 (5%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV---LQWTKDDFALGPHRNLSGFDRYAMIGSD 85
+ ++P+ Q+A+ GS V+ C + W D+ AL + A G
Sbjct: 12 QITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGEL 71
Query: 86 EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
E L + V + YQC +S G S A LT+
Sbjct: 72 MEYTTILRLRNVEFTSEGXYQCVISNH-FGS--SYSVXAXLTI 111
Score = 41.6 bits (97), Expect = 1e-04
Identities = 13/93 (13%), Positives = 26/93 (27%), Gaps = 19/93 (20%)
Query: 384 TLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------------------- 424
D P+ +P + G+ V+ C + +T+
Sbjct: 4 VCDDFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAH 63
Query: 425 IHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS 457
+ +++ + L L G Y C S
Sbjct: 64 LRAQGGELMEYTTILRLRNVEFTSEGXYQCVIS 96
Score = 41.6 bits (97), Expect = 1e-04
Identities = 13/93 (13%), Positives = 26/93 (27%), Gaps = 19/93 (20%)
Query: 538 TLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------------------- 578
D P+ +P + G+ V+ C + +T+
Sbjct: 4 VCDDFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAH 63
Query: 579 IHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS 611
+ +++ + L L G Y C S
Sbjct: 64 LRAQGGELMEYTTILRLRNVEFTSEGXYQCVIS 96
Score = 37.4 bits (86), Expect = 0.003
Identities = 16/65 (24%), Positives = 20/65 (30%), Gaps = 2/65 (3%)
Query: 476 PTIISH-RTQFGIPGDTARVECSAFSIP-PPEKVTWSYRGEEIGVGSSDDYSVHNDVGKS 533
P I TQ I G CSA S P W E + ++Y+ G
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70
Query: 534 EDSET 538
T
Sbjct: 71 LMEYT 75
Score = 35.4 bits (81), Expect = 0.017
Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 18/79 (22%)
Query: 316 VEGTDVRLYCKAEANPS-HMKYRWYINDQPVPAAASAT----------------ELYLTN 358
+ G+DV C A ++ M + W +++ + A L L N
Sbjct: 23 IXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRN 82
Query: 359 ITRHQHDSIVKCEVHNDVG 377
+ + +C + N G
Sbjct: 83 VE-FTSEGXYQCVISNHFG 100
Score = 33.1 bits (75), Expect = 0.11
Identities = 12/93 (12%), Positives = 25/93 (26%), Gaps = 4/93 (4%)
Query: 135 PRIVQG-DTLYTTEDREIELEC-ISANGKPPAEITWIDGTGTV--MSNVRVTEEASVDGR 190
P+I +T ++ C +++ P W + + G
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70
Query: 191 RTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTY 223
+ L L + + C N +Y
Sbjct: 71 LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSY 103
Score = 32.0 bits (72), Expect = 0.23
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 249 VEGTDVRLYCKAEANPS-HMKYRWYINDQPVPAAASAT 285
+ G+DV C A ++ M + W +++ + A
Sbjct: 23 IXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMEN 60
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 61.0 bits (148), Expect = 8e-10
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 8/82 (9%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
GDT + C KV S E++ S+ + + L ++ + +
Sbjct: 261 GDTLTIRCDTKQQGMT-KVWVSPSNEQVLSQGSNGSVSVRN-------GDLFFKKVQVED 312
Query: 703 FGVYNCSVSNPYGSDSVEIMLK 724
GVY C ++++ + LK
Sbjct: 313 GGVYTCYAMGETFNETLSVELK 334
Score = 45.2 bits (107), Expect = 7e-05
Identities = 15/120 (12%), Positives = 32/120 (26%), Gaps = 23/120 (19%)
Query: 396 RPYSVQVDRGAGVNLLCDVDGNPAPEITW-------IHEDSDK--VVGNSPNLTLLMTSD 446
+ + + G + + CD ++ + + S+ V N +L
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNG-DLFFKKVQV 310
Query: 447 DLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPE 505
+ G Y C A + + H T + +A P+
Sbjct: 311 EDGGVYTCYAMGETF--NETLSVELKVYNFTLHGHHDT----------LNAAADPWSHPQ 358
Score = 45.2 bits (107), Expect = 7e-05
Identities = 15/120 (12%), Positives = 32/120 (26%), Gaps = 23/120 (19%)
Query: 550 RPYSVQVDRGAGVNLLCDVDGNPAPEITW-------IHEDSDK--VVGNSPNLTLLMTSD 600
+ + + G + + CD ++ + + S+ V N +L
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNG-DLFFKKVQV 310
Query: 601 DLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPE 659
+ G Y C A + + H T + +A P+
Sbjct: 311 EDGGVYTCYAMGETF--NETLSVELKVYNFTLHGHHDT----------LNAAADPWSHPQ 358
Score = 36.7 bits (85), Expect = 0.035
Identities = 14/107 (13%), Positives = 25/107 (23%), Gaps = 18/107 (16%)
Query: 131 PPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGR 190
GDTL + C + ++ V+S +G
Sbjct: 252 KESAWEAHLGDTLT--------IRC-DTKQQGMTKVWVSPSNEQVLSQ-------GSNGS 295
Query: 191 RTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPK 237
+ L + +TC A ++L V
Sbjct: 296 VSVRNGDLFFKKVQVEDGGVYTCYAMGETFNE--TLSVELKVYNFTL 340
Score = 35.2 bits (81), Expect = 0.090
Identities = 18/116 (15%), Positives = 30/116 (25%), Gaps = 15/116 (12%)
Query: 33 EPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSL 92
+ A +G +T+ C + W + +G + L
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVR--------NGDL 303
Query: 93 EIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTED 148
V ++D Y C + G + L V DTL D
Sbjct: 304 FFKKVQVEDGGVYTC-YAMGETFN---ETLSVELKVYNFTLHGH---HDTLNAAAD 352
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 55.6 bits (134), Expect = 8e-10
Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 16/100 (16%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEG 88
+E + G + L CR+ D + W +D L +R + G
Sbjct: 11 GVPVEVESLLVHPGDLLQLRCRLRDDVQSINWLRDGVQLVES------NRTRITGE---- 60
Query: 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
+E+ + D Y C S+ G + + ++ V
Sbjct: 61 --EVEVRDSIPADSGLYACVTSSP-SGSD---TTYFSVNV 94
Score = 46.7 bits (111), Expect = 1e-06
Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 12/82 (14%)
Query: 642 PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHD 701
PGD ++ C + W G ++ S+ + + + +R+S
Sbjct: 23 PGDLLQLRCRL-RDDVQ-SINWLRDGVQLV--ESNRTRITGE--------EVEVRDSIPA 70
Query: 702 HFGVYNCSVSNPYGSDSVEIML 723
G+Y C S+P GSD+ +
Sbjct: 71 DSGLYACVTSSPSGSDTTYFSV 92
Score = 43.2 bits (102), Expect = 2e-05
Identities = 12/72 (16%), Positives = 24/72 (33%), Gaps = 6/72 (8%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVVGNSPNLTLLMTS 445
S+ V G + L C + + I W+ + S++ + + +
Sbjct: 10 WGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITGEEVEVRDSI 68
Query: 446 DDLAGRYYCKAS 457
+G Y C S
Sbjct: 69 PADSGLYACVTS 80
Score = 43.2 bits (102), Expect = 2e-05
Identities = 12/72 (16%), Positives = 24/72 (33%), Gaps = 6/72 (8%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVVGNSPNLTLLMTS 599
S+ V G + L C + + I W+ + S++ + + +
Sbjct: 10 WGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITGEEVEVRDSI 68
Query: 600 DDLAGRYYCKAS 611
+G Y C S
Sbjct: 69 PADSGLYACVTS 80
Score = 39.0 bits (91), Expect = 7e-04
Identities = 10/79 (12%), Positives = 28/79 (35%), Gaps = 9/79 (11%)
Query: 315 LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA----SATELYLTNITRHQHDS-IVK 369
+ G ++L C+ + W + + + + E+ + + DS +
Sbjct: 21 VHPGDLLQLRCRLRDDV--QSINWLRDGVQLVESNRTRITGEEVEVRDSIPA--DSGLYA 76
Query: 370 CEVHNDVGKSEDSETLDVT 388
C + G +++V+
Sbjct: 77 CVTSSPSGSDTTYFSVNVS 95
Score = 30.5 bits (69), Expect = 0.68
Identities = 10/75 (13%), Positives = 22/75 (29%), Gaps = 22/75 (29%)
Query: 488 PGDTARVECSAFSIPPPEKVTWSYRGEEI----------------GVGSSD--DYS--VH 527
PGD ++ C + W G ++ +D Y+
Sbjct: 23 PGDLLQLRCRL-RDDVQ-SINWLRDGVQLVESNRTRITGEEVEVRDSIPADSGLYACVTS 80
Query: 528 NDVGKSEDSETLDVT 542
+ G +++V+
Sbjct: 81 SPSGSDTTYFSVNVS 95
Score = 29.0 bits (65), Expect = 2.0
Identities = 6/45 (13%), Positives = 14/45 (31%), Gaps = 2/45 (4%)
Query: 235 APKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVP 279
P + S + G ++L C+ + W + +
Sbjct: 8 QPWGVPVEVESLLVHPGDLLQLRCRLRDDV--QSINWLRDGVQLV 50
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 55.8 bits (135), Expect = 8e-10
Identities = 21/114 (18%), Positives = 35/114 (30%), Gaps = 16/114 (14%)
Query: 16 ALSMGSLAQYREQKFAMEPQDQTAVV-GSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLS 74
S+ + + F + + V G ++ L + D ++W K+ +
Sbjct: 4 HHHHSSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVELADHDAEVKWLKNGQEIQMSG--- 60
Query: 75 GFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
+Y +L I L DDA YQC V L V
Sbjct: 61 --SKYIF--ESIGAKRTLTISQCSLADDAAYQCVVGG--------EKCSTELFV 102
Score = 45.4 bits (108), Expect = 4e-06
Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 12/84 (14%)
Query: 384 TLDVTYGPRFRAR-PYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVV--- 433
++D F+ + + QV +G + L ++ + E+ W I K +
Sbjct: 9 SMDEKKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFES 67
Query: 434 -GNSPNLTLLMTSDDLAGRYYCKA 456
G LT+ S Y C
Sbjct: 68 IGAKRTLTISQCSLADDAAYQCVV 91
Score = 45.4 bits (108), Expect = 4e-06
Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 12/84 (14%)
Query: 538 TLDVTYGPRFRAR-PYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVV--- 587
++D F+ + + QV +G + L ++ + E+ W I K +
Sbjct: 9 SMDEKKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFES 67
Query: 588 -GNSPNLTLLMTSDDLAGRYYCKA 610
G LT+ S Y C
Sbjct: 68 IGAKRTLTISQCSLADDAAYQCVV 91
Score = 44.7 bits (106), Expect = 9e-06
Identities = 18/70 (25%), Positives = 22/70 (31%), Gaps = 7/70 (10%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
G R+ + E V W G+EI S Y G K TL I +
Sbjct: 31 GHKIRLTVEL-ADHDAE-VKWLKNGQEI-QMSGSKYIFESI----GAKRTLTISQCSLAD 83
Query: 703 FGVYNCSVSN 712
Y C V
Sbjct: 84 DAAYQCVVGG 93
Score = 30.8 bits (70), Expect = 0.62
Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 11/94 (11%)
Query: 127 TVLVPPDPPRIVQG--DTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTE 183
+ + + ++ +I L A+ AE+ W+ +G MS +
Sbjct: 8 SSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVELAD--HDAEVKWLKNGQEIQMSGSKYIF 65
Query: 184 EASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQN 217
E+ G K TL ++ + + C
Sbjct: 66 ES--IGA----KRTLTISQCSLADDAAYQCVVGG 93
Score = 29.6 bits (67), Expect = 1.6
Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 3/41 (7%)
Query: 489 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHND 529
G R+ + E V W G+EI S Y +
Sbjct: 31 GHKIRLTVEL-ADHDAE-VKWLKNGQEI-QMSGSKYIFESI 68
Score = 28.1 bits (63), Expect = 5.1
Identities = 9/51 (17%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 228 LKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPV 278
+ K + Q + + ++ +G +RL + A+ + +W N Q +
Sbjct: 8 SSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHD-AEVKWLKNGQEI 56
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 55.8 bits (135), Expect = 1e-09
Identities = 19/104 (18%), Positives = 31/104 (29%), Gaps = 19/104 (18%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAMIGS 84
+ + + G V ++W + L + +
Sbjct: 10 RITLRMRSHRVPCGQNTRFILNV---QSKPTAEVKWYHNG------VELQESSKIHY--T 58
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
+ G +LEI DD Y+ T GE S +ATL V
Sbjct: 59 NTSGVLTLEILDCHTDDSGTYRAVC-TNYKGE---ASDYATLDV 98
Score = 53.5 bits (129), Expect = 6e-09
Identities = 23/96 (23%), Positives = 29/96 (30%), Gaps = 8/96 (8%)
Query: 630 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688
P I R+ G R + S P E V W + G E+ S
Sbjct: 9 PRITLRMRSHRVPCGQNTRFILNVQSKPTAE-VKWYHNGVELQ--ESSKIHYTNT----S 61
Query: 689 IKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
TL I + D G Y +N G S L
Sbjct: 62 GVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLD 97
Score = 52.3 bits (126), Expect = 2e-08
Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 14/101 (13%)
Query: 385 LDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVVGNSPN 438
+ + PR R S +V G + +V P E+ W + E S N+
Sbjct: 3 FTLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSG 62
Query: 439 LTLLM----TSDDLAGRYYCKAS-VMGFPEVGAEATVYLKG 474
+ L +DD +G Y + G E AT+ + G
Sbjct: 63 VLTLEILDCHTDD-SGTYRAVCTNYKG--EASDYATLDVTG 100
Score = 52.3 bits (126), Expect = 2e-08
Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 14/101 (13%)
Query: 539 LDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVVGNSPN 592
+ + PR R S +V G + +V P E+ W + E S N+
Sbjct: 3 FTLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSG 62
Query: 593 LTLLM----TSDDLAGRYYCKAS-VMGFPEVGAEATVYLKG 628
+ L +DD +G Y + G E AT+ + G
Sbjct: 63 VLTLEILDCHTDD-SGTYRAVCTNYKG--EASDYATLDVTG 100
Score = 34.2 bits (79), Expect = 0.038
Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 12/84 (14%)
Query: 314 RLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA--------SATELYLTNITRHQHD 365
R+ G + R ++ P+ + +WY N + ++ L + + D
Sbjct: 19 RVPCGQNTRFILNVQSKPT-AEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCH--TDD 75
Query: 366 S-IVKCEVHNDVGKSEDSETLDVT 388
S + N G++ D TLDVT
Sbjct: 76 SGTYRAVCTNYKGEASDYATLDVT 99
Score = 31.9 bits (73), Expect = 0.24
Identities = 15/57 (26%), Positives = 19/57 (33%), Gaps = 4/57 (7%)
Query: 476 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVG 531
P I R+ G R + S P E V W + G E+ S N G
Sbjct: 9 PRITLRMRSHRVPCGQNTRFILNVQSKPTAE-VKWYHNGVEL--QESSKIHYTNTSG 62
Score = 31.1 bits (71), Expect = 0.38
Identities = 10/50 (20%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 229 KLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPV 278
+ +AP++ + S+R+ G + R ++ P+ + +WY N +
Sbjct: 2 PFTLDHAPRI-TLRMRSHRVPCGQNTRFILNVQSKPT-AEVKWYHNGVEL 49
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 56.3 bits (135), Expect = 1e-09
Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 3/85 (3%)
Query: 643 GDTARVECSAFSIPPPE-KVTWSYRGEEIGVGS--SDDYSVLEDPLKEGIKSTLIIRESR 699
G+ + C+A + W Y + + D + STL I
Sbjct: 23 GEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVT 82
Query: 700 HDHFGVYNCSVSNPYGSDSVEIMLK 724
G+Y C+ S+ + ++
Sbjct: 83 RSDQGLYTCAASSGLMTKKNSTFVR 107
Score = 44.3 bits (104), Expect = 1e-05
Identities = 15/102 (14%), Positives = 29/102 (28%), Gaps = 7/102 (6%)
Query: 34 PQDQTAVVGSRVTLPCRVI---DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDY 90
VG ++ L C + W + ++ + ++
Sbjct: 15 SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLS 74
Query: 91 SLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP 132
+L I V D Y C S+G+ + + V P
Sbjct: 75 TLTIDGVTRSDQGLYTCAASSGL----MTKKNSTFVRVHEKP 112
Score = 41.3 bits (96), Expect = 2e-04
Identities = 18/117 (15%), Positives = 28/117 (23%), Gaps = 13/117 (11%)
Query: 128 VLVPPDPPRIVQGDTLYTTEDREIELEC-ISANGKPPAEITWIDGTGTVMSNVRVTEEAS 186
VL P + G+ L L C + W + V +
Sbjct: 11 VLSPSHGIELSVGEKL--------VLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLK 62
Query: 187 VDG--RRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVS 241
STL + +TC A + ++ V P V
Sbjct: 63 TQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVR--VHEKPFVAFG 117
Score = 34.7 bits (79), Expect = 0.040
Identities = 15/105 (14%), Positives = 28/105 (26%), Gaps = 18/105 (17%)
Query: 304 EVQVSVIGSNRLVEGTDVRLYCKAEANPS-HMKYRWYINDQPVPAAASATE--------- 353
+V +S L G + L C A + + + W
Sbjct: 9 DVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSE 68
Query: 354 -------LYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGP 391
L + +TR C + + ++S + V P
Sbjct: 69 MKKFLSTLTIDGVTRSDQGLY-TCAASSGLMTKKNSTFVRVHEKP 112
Score = 32.8 bits (74), Expect = 0.18
Identities = 19/116 (16%), Positives = 29/116 (25%), Gaps = 25/116 (21%)
Query: 382 SETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAP--EITWIHEDSDKVVGNSPNL 439
DV P + +++ G + L C + W + S N
Sbjct: 5 YRIYDVVLSP-----SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNR 59
Query: 440 TLLMTSDDL-----------------AGRYYCKASVMGFPEVGAEATVYLKGRPTI 478
L S G Y C AS G V + +P +
Sbjct: 60 DLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASS-GLMTKKNSTFVRVHEKPFV 114
Score = 32.8 bits (74), Expect = 0.18
Identities = 19/116 (16%), Positives = 29/116 (25%), Gaps = 25/116 (21%)
Query: 536 SETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAP--EITWIHEDSDKVVGNSPNL 593
DV P + +++ G + L C + W + S N
Sbjct: 5 YRIYDVVLSP-----SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNR 59
Query: 594 TLLMTSDDL-----------------AGRYYCKASVMGFPEVGAEATVYLKGRPTI 632
L S G Y C AS G V + +P +
Sbjct: 60 DLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASS-GLMTKKNSTFVRVHEKPFV 114
Score = 30.5 bits (68), Expect = 1.0
Identities = 8/54 (14%), Positives = 16/54 (29%), Gaps = 3/54 (5%)
Query: 489 GDTARVECSAFSIPPPE-KVTWSYRGEEIGVGS--SDDYSVHNDVGKSEDSETL 539
G+ + C+A + W Y + + D + + TL
Sbjct: 23 GEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTL 76
Score = 29.7 bits (66), Expect = 2.2
Identities = 9/65 (13%), Positives = 14/65 (21%), Gaps = 1/65 (1%)
Query: 236 PKVQVSVIGSNRLVEGTDVRLYCKAEANPS-HMKYRWYINDQPVPAAASATELYLTNITR 294
V +S L G + L C A + + + W T
Sbjct: 8 YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGS 67
Query: 295 HQHDS 299
Sbjct: 68 EMKKF 72
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 55.5 bits (134), Expect = 1e-09
Identities = 19/111 (17%), Positives = 29/111 (26%), Gaps = 16/111 (14%)
Query: 18 SMGSLAQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFD 77
S GS + K ++ A G+ TL C V + W KD L
Sbjct: 2 SSGSSGKVVFAKEQPAHREVQAEAGASATLSCEVAQAQTEVTWYKDGKKLSSS------S 55
Query: 78 RYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
+ + L + + Y C+ L V
Sbjct: 56 KVRV--EAVGCTRRLVVQQAGQAEAGEYSCEAGGQ--------QLSFRLQV 96
Score = 47.4 bits (113), Expect = 8e-07
Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 8/70 (11%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
G +A + C + E VTW G+++ SS V G L+++++
Sbjct: 26 GASATLSCEV-AQAQTE-VTWYKDGKKLS--SSSKVRVEAV----GCTRRLVVQQAGQAE 77
Query: 703 FGVYNCSVSN 712
G Y+C
Sbjct: 78 AGEYSCEAGG 87
Score = 42.8 bits (101), Expect = 3e-05
Identities = 21/95 (22%), Positives = 32/95 (33%), Gaps = 15/95 (15%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH-----EDSDKVV----GNSPNLTL 441
+ + VQ + GA L C+V E+TW S KV G + L +
Sbjct: 12 AKEQPAHREVQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVV 70
Query: 442 LMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRP 476
AG Y C+A + + G+
Sbjct: 71 QQAGQAEAGEYSCEAG-----GQQLSFRLQVAGQC 100
Score = 42.8 bits (101), Expect = 3e-05
Identities = 21/95 (22%), Positives = 32/95 (33%), Gaps = 15/95 (15%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH-----EDSDKVV----GNSPNLTL 595
+ + VQ + GA L C+V E+TW S KV G + L +
Sbjct: 12 AKEQPAHREVQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVV 70
Query: 596 LMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRP 630
AG Y C+A + + G+
Sbjct: 71 QQAGQAEAGEYSCEAG-----GQQLSFRLQVAGQC 100
Score = 30.8 bits (70), Expect = 0.51
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 489 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHND 529
G +A + C + E VTW G+++ SS V
Sbjct: 26 GASATLSCEV-AQAQTE-VTWYKDGKKL--SSSSKVRVEAV 62
Score = 29.3 bits (66), Expect = 1.6
Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 11/92 (11%)
Query: 127 TVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEAS 186
V+ + P + L C A E+TW + S+ +V
Sbjct: 8 KVVFAKEQPAH---REVQAEAGASATLSCEVAQ--AQTEVTWYKDGKKLSSSSKVR--VE 60
Query: 187 VDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNT 218
G LV+ + ++C+A
Sbjct: 61 AVGCT----RRLVVQQAGQAEAGEYSCEAGGQ 88
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 60.8 bits (147), Expect = 1e-09
Identities = 31/198 (15%), Positives = 63/198 (31%), Gaps = 30/198 (15%)
Query: 33 EPQDQTAVVGSRVTLPCRVIDKTGV--------LQWTKDDFALGPHRNLSGFDRYAMIGS 84
P+ + S T C + +K + W + F + +Y +I
Sbjct: 9 SPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKE-------QYTIINR 61
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLY 144
S + + + + C + T G+ T+ +PP+ P+ + +
Sbjct: 62 TA----SSVTFTDIASLNIQLTCNILTF--GQLEQNVYGITIISGLPPEKPKNL---SCI 112
Query: 145 TTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKK 204
E +++ E E T ++ T+ S + A +R T S V
Sbjct: 113 VNEGKKMRCEW-----DGGRE-THLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTV 166
Query: 205 EHHNTTFTCQAQNTADRT 222
N +A+N +
Sbjct: 167 YFVNIEVWVEAENALGKV 184
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 55.8 bits (134), Expect = 2e-09
Identities = 17/111 (15%), Positives = 34/111 (30%), Gaps = 9/111 (8%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRV----IDKTGVLQWTKDDFALGPHRNLSGFD-RYAMIGS 84
F +PQ T VG +T +V + + ++W K + + +
Sbjct: 10 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERH 69
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPP 135
+ ++I + Y+C+V+ S L V
Sbjct: 70 SRVYTFEMQIIKAKDNFAGNYRCEVTYKD-KF---DSCSFDLEVHESTGTT 116
Score = 47.7 bits (113), Expect = 1e-06
Identities = 13/88 (14%), Positives = 30/88 (34%), Gaps = 7/88 (7%)
Query: 643 GDTARVECSAFSIPPPEK--VTWSYRGEEIGVGSSDDYSV----LEDPLKEGIKSTLIIR 696
G+ + K + W ++G+ + + S + + + I
Sbjct: 22 GEDITFIAKVKAEDLLRKPTIKW-FKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQII 80
Query: 697 ESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
+++ + G Y C V+ DS L+
Sbjct: 81 KAKDNFAGNYRCEVTYKDKFDSCSFDLE 108
Score = 41.9 bits (98), Expect = 1e-04
Identities = 13/90 (14%), Positives = 25/90 (27%), Gaps = 23/90 (25%)
Query: 390 GPRFRARPYSVQVDRGAGVNLLCDVDGNP---APEITWIH----------------EDSD 430
G F +P V G + + V P I W +++
Sbjct: 7 GILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETF 66
Query: 431 KVVGNSPNLTLLM---TSDDLAGRYYCKAS 457
+ + + + AG Y C+ +
Sbjct: 67 ERHSRVYTFEMQIIKAKDNF-AGNYRCEVT 95
Score = 41.9 bits (98), Expect = 1e-04
Identities = 13/90 (14%), Positives = 25/90 (27%), Gaps = 23/90 (25%)
Query: 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNP---APEITWIH----------------EDSD 584
G F +P V G + + V P I W +++
Sbjct: 7 GILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETF 66
Query: 585 KVVGNSPNLTLLM---TSDDLAGRYYCKAS 611
+ + + + AG Y C+ +
Sbjct: 67 ERHSRVYTFEMQIIKAKDNF-AGNYRCEVT 95
Score = 31.9 bits (72), Expect = 0.36
Identities = 15/91 (16%), Positives = 23/91 (25%), Gaps = 18/91 (19%)
Query: 316 VEGTDVRLYCKAEANPSHMK--YRWYINDQPVPAAASATELYLTNITRHQHDSIV----- 368
G D+ K +A K +W+ A+ + L L
Sbjct: 20 KVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQI 79
Query: 369 -----------KCEVHNDVGKSEDSETLDVT 388
+CEV S L+V
Sbjct: 80 IKAKDNFAGNYRCEVTYKDKFDSCSFDLEVH 110
Score = 30.0 bits (67), Expect = 1.5
Identities = 8/100 (8%), Positives = 22/100 (22%), Gaps = 9/100 (9%)
Query: 146 TEDREIELECISANGKPPA---EITWIDGTG---TVMSNVRVTEEASVDGRRTTVKSTLV 199
+I + I W G + + + + + +
Sbjct: 20 KVGEDITFIA-KVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQ 78
Query: 200 LTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQ 239
+ K++ + C+ L V +
Sbjct: 79 IIKAKDNFAGNYRCEVTYKDKFD--SCSFDLEVHESTGTT 116
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 55.8 bits (134), Expect = 2e-09
Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 21/118 (17%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRN-LSGFDRYAMIG 83
F P Q VG V L C G +QW + + L R +
Sbjct: 23 GFVQAPLSQQRWVGGSVELHCEA---VGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVH 79
Query: 84 SDEE----GDYSLEIYPVMLDDDARYQCQVS--------TGILGEPAIRSRFATLTVL 129
++ I ++ +D Y+C+ S T +R++ A + VL
Sbjct: 80 IHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQ-AVVLVL 136
Score = 55.0 bits (132), Expect = 4e-09
Identities = 19/109 (17%), Positives = 34/109 (31%), Gaps = 9/109 (8%)
Query: 619 GAEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGV----- 672
+ + +Q G + + C A P PE + W + G+
Sbjct: 11 SSGLVPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPE-IQWWFEGQGPNDICSQL 69
Query: 673 --GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSV 719
G+ D + + ST+ I + G Y C SN + +
Sbjct: 70 WDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHL 118
Score = 51.9 bits (124), Expect = 4e-08
Identities = 27/117 (23%), Positives = 37/117 (31%), Gaps = 30/117 (25%)
Query: 518 VGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEIT 577
+GSS + H+ G + F P S Q G V L C+ G+P PEI
Sbjct: 1 MGSSH-HHHHHSSGLVPRGSHM-----AGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQ 54
Query: 578 WIHED--------------------SDKVVGNSPNLTLLM---TSDDLAGRYYCKAS 611
W E T+ + +D G Y C+AS
Sbjct: 55 WWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEED-TGTYECRAS 110
Score = 50.8 bits (121), Expect = 1e-07
Identities = 24/111 (21%), Positives = 32/111 (28%), Gaps = 29/111 (26%)
Query: 370 CEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED- 428
H+ G + F P S Q G V L C+ G+P PEI W E
Sbjct: 6 HHHHHSSGLVPRGSHM-----AGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQ 60
Query: 429 -------------------SDKVVGNSPNLTLLM---TSDDLAGRYYCKAS 457
T+ + +D G Y C+AS
Sbjct: 61 GPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEED-TGTYECRAS 110
Score = 46.6 bits (110), Expect = 3e-06
Identities = 27/125 (21%), Positives = 40/125 (32%), Gaps = 12/125 (9%)
Query: 128 VLVPPDPPRIVQG-DTLYTTEDREIELECISANGKPPAEITW-------IDGTGTVMSNV 179
V VQ + +EL C A G P EI W D +
Sbjct: 15 VPRGSHMAGFVQAPLSQQRWVGGSVELHC-EAVGSPVPEIQWWFEGQGPNDICSQLWDGA 73
Query: 180 RVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYA-PKV 238
R+ ST+ + E T+ C+A N DR + + VK+ +
Sbjct: 74 RLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPR--VKWVRAQA 131
Query: 239 QVSVI 243
V V+
Sbjct: 132 VVLVL 136
Score = 35.4 bits (81), Expect = 0.028
Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 2/53 (3%)
Query: 465 GAEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEI 516
+ + +Q G + + C A P PE + W + G+
Sbjct: 11 SSGLVPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPE-IQWWFEGQGP 62
Score = 31.9 bits (72), Expect = 0.36
Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 21/94 (22%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT------ELYLTNITRHQHDSIV- 368
G V L+C+A +P + +W+ Q S + + T HQH +
Sbjct: 34 WVGGSVELHCEAVGSPVP-EIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTI 92
Query: 369 -------------KCEVHNDVGKSEDSETLDVTY 389
+C ND ++ + V +
Sbjct: 93 SIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKW 126
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 54.4 bits (131), Expect = 3e-09
Identities = 18/106 (16%), Positives = 30/106 (28%), Gaps = 18/106 (16%)
Query: 28 QKFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIG 83
ME + + V C G ++W K+ + G+
Sbjct: 9 NTEKMEKRLHAVPAANTVKFRCPA---GGNPMPTMRWLKNGKEFKQEHRIGGY------- 58
Query: 84 SDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVL 129
+SL + V+ D Y C V G + L V+
Sbjct: 59 KVRNQHWSLIMESVVPSDKGNYTCVV-ENEYGS---INHTYHLDVV 100
Score = 49.7 bits (119), Expect = 1e-07
Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 6/96 (6%)
Query: 629 RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688
+ R +T + C A P P + W G+E + +
Sbjct: 9 NTEKMEKRLHAVPAANTVKFRCPAGGNPMPT-MRWLKNGKEFKQEHRIGGYKVRNQ---- 63
Query: 689 IKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
+LI+ G Y C V N YGS + L
Sbjct: 64 -HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 98
Score = 44.0 bits (104), Expect = 1e-05
Identities = 15/81 (18%), Positives = 22/81 (27%), Gaps = 14/81 (17%)
Query: 391 PRF----RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD----------KVVGNS 436
P + + V V C GNP P + W+ + KV
Sbjct: 5 PYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH 64
Query: 437 PNLTLLMTSDDLAGRYYCKAS 457
+L + G Y C
Sbjct: 65 WSLIMESVVPSDKGNYTCVVE 85
Score = 44.0 bits (104), Expect = 1e-05
Identities = 15/81 (18%), Positives = 22/81 (27%), Gaps = 14/81 (17%)
Query: 545 PRF----RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD----------KVVGNS 590
P + + V V C GNP P + W+ + KV
Sbjct: 5 PYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH 64
Query: 591 PNLTLLMTSDDLAGRYYCKAS 611
+L + G Y C
Sbjct: 65 WSLIMESVVPSDKGNYTCVVE 85
Score = 39.3 bits (92), Expect = 5e-04
Identities = 12/103 (11%), Positives = 27/103 (26%), Gaps = 11/103 (10%)
Query: 134 PPRIVQGDTLYTT-----EDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVD 188
P + + ++ C A G P + W+ R+ +
Sbjct: 4 APYWTNTEKMEKRLHAVPAANTVKFRCP-AGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN 62
Query: 189 GRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLL 231
+L++ +TC +N L ++
Sbjct: 63 Q-----HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 100
Score = 37.0 bits (86), Expect = 0.003
Identities = 19/83 (22%), Positives = 26/83 (31%), Gaps = 17/83 (20%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIV-------- 368
V+ C A NP RW N + R+QH S++
Sbjct: 22 AANTVKFRCPAGGNPM-PTMRWLKNGKEFK----QEHRIGGYKVRNQHWSLIMESVVPSD 76
Query: 369 ----KCEVHNDVGKSEDSETLDV 387
C V N+ G + LDV
Sbjct: 77 KGNYTCVVENEYGSINHTYHLDV 99
Score = 30.9 bits (70), Expect = 0.49
Identities = 19/92 (20%), Positives = 28/92 (30%), Gaps = 26/92 (28%)
Query: 475 RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEI------------------ 516
+ R +T + C A P P + W G+E
Sbjct: 9 NTEKMEKRLHAVPAANTVKFRCPAGGNPMPT-MRWLKNGKEFKQEHRIGGYKVRNQHWSL 67
Query: 517 ---GVGSSD--DYS--VHNDVGKSEDSETLDV 541
V SD +Y+ V N+ G + LDV
Sbjct: 68 IMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
Score = 30.5 bits (69), Expect = 0.66
Identities = 8/30 (26%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 250 EGTDVRLYCKAEANPSHMKYRWYINDQPVP 279
V+ C A NP RW N +
Sbjct: 22 AANTVKFRCPAGGNPM-PTMRWLKNGKEFK 50
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 54.8 bits (132), Expect = 3e-09
Identities = 22/114 (19%), Positives = 35/114 (30%), Gaps = 21/114 (18%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
+ P D G TL C+ G ++W K + ++ R +
Sbjct: 11 RIVEHPSDLIVSKGEPATLNCKA---EGRPTPTIEWYKGGERVETDKDDPRSHRMLL--- 64
Query: 85 DEEGDYSLEIYPVML-----DDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD 133
G SL ++ D+ Y C + GE S A+L V
Sbjct: 65 -PSG--SLFFLRIVHGRKSRPDEGVYVCVARNYL-GE--AVSHDASLEVAAAAH 112
Score = 50.6 bits (121), Expect = 8e-08
Identities = 25/113 (22%), Positives = 39/113 (34%), Gaps = 20/113 (17%)
Query: 387 VTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVVGNS---P 437
+ PR P + V +G L C +G P P I W + D D + P
Sbjct: 6 EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 438 NLTLL--------MTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISH 481
+ +L + D G Y C A +G V +A++ + H
Sbjct: 66 SGSLFFLRIVHGRKSRPD-EGVYVCVARNYLG-EAVSHDASLEVAAAAHHHHH 116
Score = 50.6 bits (121), Expect = 8e-08
Identities = 25/113 (22%), Positives = 39/113 (34%), Gaps = 20/113 (17%)
Query: 541 VTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVVGNS---P 591
+ PR P + V +G L C +G P P I W + D D + P
Sbjct: 6 EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 592 NLTLL--------MTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISH 635
+ +L + D G Y C A +G V +A++ + H
Sbjct: 66 SGSLFFLRIVHGRKSRPD-EGVYVCVARNYLG-EAVSHDASLEVAAAAHHHHH 116
Score = 44.4 bits (105), Expect = 1e-05
Identities = 28/100 (28%), Positives = 37/100 (37%), Gaps = 8/100 (8%)
Query: 630 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688
P I+ H G+ A + C A P P + W GE + DD L G
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTP-TIEWYKGGERV-ETDKDDPRSHRMLLPSG 67
Query: 689 ---IKSTLIIRESRHDHFGVYNCSVSNPYGSD-SVEIMLK 724
+ R+SR D GVY C N G S + L+
Sbjct: 68 SLFFLRIVHGRKSRPDE-GVYVCVARNYLGEAVSHDASLE 106
Score = 42.5 bits (100), Expect = 6e-05
Identities = 23/111 (20%), Positives = 35/111 (31%), Gaps = 8/111 (7%)
Query: 134 PPRIVQ--GDTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGR 190
PPRIV+ D + ++ L C A G+P I W G +
Sbjct: 9 PPRIVEHPSDLI-VSKGEPATLNC-KAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPS 66
Query: 191 RTTVKSTLVLTPKKEHHNTTFTCQAQNTA-DRTYKVARLKLLVKYAPKVQV 240
+ +V K + C A+N + A L+ V A
Sbjct: 67 GSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLE--VAAAAHHHH 115
Score = 38.3 bits (89), Expect = 0.002
Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 16/93 (17%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATE----------LYLTNIT---RH 362
+G L CKAE P+ WY + V L+ I +
Sbjct: 22 SKGEPATLNCKAEGRPT-PTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKS 80
Query: 363 QHDSIV-KCEVHNDVGKSEDSE-TLDVTYGPRF 393
+ D V C N +G++ + +L+V
Sbjct: 81 RPDEGVYVCVARNYLGEAVSHDASLEVAAAAHH 113
Score = 32.5 bits (74), Expect = 0.21
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 249 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLT 290
+G L CKAE P+ WY + V +
Sbjct: 22 SKGEPATLNCKAEGRPT-PTIEWYKGGERVETDKDDPRSHRM 62
Score = 31.7 bits (72), Expect = 0.36
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 476 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYS 525
P I+ H G+ A + C A P P + W GE + D S
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTP-TIEWYKGGERVETDKDDPRS 59
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 54.6 bits (131), Expect = 4e-09
Identities = 21/121 (17%), Positives = 39/121 (32%), Gaps = 23/121 (19%)
Query: 34 PQDQTAVVGSRVTLPCRV-----IDKTGVLQWTKDDFALGPHRNLSGF------------ 76
++ VGS+VTL C + W ++ +
Sbjct: 6 DREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGT 65
Query: 77 --DRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDP 134
+R +G D S+ I+ + D+ + C V P I + + +T+ V
Sbjct: 66 FKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKN----PPDIVGKTSQVTLYVFEKV 121
Query: 135 P 135
P
Sbjct: 122 P 122
Score = 28.8 bits (64), Expect = 4.4
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 19/101 (18%)
Query: 632 IISHRTQFGIPGDTARVECSAFSIPPPEK---VTWSYRGEEIGVGSSDDYSVLEDPLKEG 688
+ + R +G G + CS +S TW Y+ E S + P +
Sbjct: 3 VYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDE 62
Query: 689 IKS----------------TLIIRESRHDHFGVYNCSVSNP 713
+ + +++I + G + C V NP
Sbjct: 63 VGTFKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNP 103
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 53.4 bits (128), Expect = 1e-08
Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 4/96 (4%)
Query: 630 PTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGI 689
P + + + + S P P + W + G + S LE E +
Sbjct: 4 PASV--QLHTAVEMHHWCIPFSVDGQPAPS-LRWLFNGSVLNETSFIFTEFLEPAANETV 60
Query: 690 K-STLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
+ L + + H + G Y +NP+G S IM
Sbjct: 61 RHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAA 96
Score = 44.2 bits (104), Expect = 2e-05
Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 8/103 (7%)
Query: 134 PPRIVQGDTLYTTEDREIELECI--SANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGR 190
P VQ E+ CI S +G+P + W+ +G+ ++ TE
Sbjct: 3 MPASVQ-----LHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAAN 57
Query: 191 RTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVK 233
T L L +N +T A N + +
Sbjct: 58 ETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDN 100
Score = 39.9 bits (93), Expect = 5e-04
Identities = 21/106 (19%), Positives = 30/106 (28%), Gaps = 22/106 (20%)
Query: 397 PYSVQVDRGAGVNLLC---DVDGNPAPEITW----------------IHEDSDKVVGNSP 437
P SVQ+ ++ C VDG PAP + W E +
Sbjct: 4 PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHG 63
Query: 438 NLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISHR 482
L L + G Y A+ G + A P +
Sbjct: 64 CLRLNQPTHVNNGNYTLLAANPFG--QASASIMAAFMDNPFEFNPE 107
Score = 39.9 bits (93), Expect = 5e-04
Identities = 21/106 (19%), Positives = 30/106 (28%), Gaps = 22/106 (20%)
Query: 551 PYSVQVDRGAGVNLLC---DVDGNPAPEITW----------------IHEDSDKVVGNSP 591
P SVQ+ ++ C VDG PAP + W E +
Sbjct: 4 PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHG 63
Query: 592 NLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISHR 636
L L + G Y A+ G + A P +
Sbjct: 64 CLRLNQPTHVNNGNYTLLAANPFG--QASASIMAAFMDNPFEFNPE 107
Score = 28.8 bits (64), Expect = 3.6
Identities = 17/105 (16%), Positives = 28/105 (26%), Gaps = 14/105 (13%)
Query: 37 QTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGP-HRNLSGFDRYAMIGSDEEGDYS 91
TAV +P V G L+W + L + F A + G
Sbjct: 10 HTAVEMHHWCIPFSV---DGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHG--C 64
Query: 92 LEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPR 136
L + ++ Y + G+ S + P
Sbjct: 65 LRLNQPTHVNNGNYTLLAAN-PFGQ---ASASIMAAFMDNPFEFN 105
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.1 bits (140), Expect = 1e-08
Identities = 94/646 (14%), Positives = 159/646 (24%), Gaps = 281/646 (43%)
Query: 475 RPTIISH---RTQFGIP------GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSD--- 522
RP +SH +P + + + +P P + + +E ++
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQLQEQFNK-ILPEPTEGFAA--DDEP---TTPAEL 60
Query: 523 -----DYSVHNDVGKSEDSETLDV--TYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPE 575
Y V + V S+ + V F L D
Sbjct: 61 VGKFLGY-VSSLVEPSKVGQFDQVLNLCLTEFEN-------------CYLEGND------ 100
Query: 576 ITWIHEDSDKVVGNSPNL--TLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLK----GR 629
IH + T L+ + +L Y + P + + G
Sbjct: 101 ---IH----ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGN 153
Query: 630 PTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKE-- 687
++ FG G G++DDY E+ L++
Sbjct: 154 AQLV---AIFG------------------------------GQGNTDDY--FEE-LRDLY 177
Query: 688 ----GIKSTLIIR---------ESRHDHFGVYNCSVSNPYGSDSVEIMLKPQK------- 727
+ LI + D V+ G + +E + P
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAEKVF------TQGLNILEWLENPSNTPDKDYL 231
Query: 728 -----SFPLLLI-----------------------LTGVIGCVV-ILVAL---------- 748
S PL+ + L G G ++ A+
Sbjct: 232 LSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWES 291
Query: 749 ------TMVVIL------CQRKVKKPPPGNGIEHHVTADGEKNQCKESDNS-----SNIS 791
+ +L C P + + D +N E S SN++
Sbjct: 292 FFVSVRKAITVLFFIGVRCYEAY----PNTSLPPSILEDSLENN--EGVPSPMLSISNLT 345
Query: 792 DIKLEFRTGSSVS--NVHLDYAGHDSETGSESVHTRIGV---P----LAGPVPMD----- 837
+++ V+ N HL V I + ++GP P
Sbjct: 346 QEQVQ----DYVNKTNSHLPAGKQ--------VE--ISLVNGAKNLVVSGP-PQSLYGLN 390
Query: 838 ---QRYHRYSSADFADAVFPSLKPDGHNNNGFVFSDFIRDYNQTLPKLAP--SPHLPPSL 892
++ S D + F K N F LP +P S L P
Sbjct: 391 LTLRKAKAPSGLDQSRIPFSERKLKFSN----RF----------LPVASPFHSHLLVP-- 434
Query: 893 SNSVIVTDKTP-----PPSHLTISSNSVDPRYSATYGNPYLRQ-SPNLPPPHTGQPPPPP 946
++ +I D + I P Y T+ LR S ++
Sbjct: 435 ASDLINKDLVKNNVSFNAKDIQI------PVYD-TFDGSDLRVLSGSISERIV------- 480
Query: 947 YSSVRNGALPQATRLPSSPTSQFIV--PNNTNHSTSIKRGTLATHV 990
RLP V T ATH+
Sbjct: 481 ---------DCIIRLP--------VKWETTTQFK--------ATHI 501
Score = 37.0 bits (85), Expect = 0.042
Identities = 41/241 (17%), Positives = 87/241 (36%), Gaps = 62/241 (25%)
Query: 561 GVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGA 620
G ++L V NP +T IH +K N + ++ + G+ + F E+
Sbjct: 1658 GFSILDIVINNP-VNLT-IHFGGEKGKRIRENYSAMIFETIVDGKLKTEKI---FKEINE 1712
Query: 621 EATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDD--- 677
+T Y + TQF P T +E +AF + G+ +D
Sbjct: 1713 HSTSYTFRSEKGLLSATQFTQPALTL-MEKAAFED-------L----KSKGLIPADATFA 1760
Query: 678 ------YS-------VLEDPLKEGIKSTLIIR-----------ESRHDHFGVYNC---SV 710
Y+ V+ ++ ++ + R E ++G+ V
Sbjct: 1761 GHSLGEYAALASLADVM--SIESLVE-VVFYRGMTMQVAVPRDELGRSNYGMIAINPGRV 1817
Query: 711 SNPYGSDSVEIMLKP--QKSFPLLLI----LTGVIGCVVI---LVAL-TMVVILCQRKVK 760
+ + ++++ +++ +++ L+ I + V L AL T+ +L K++
Sbjct: 1818 AASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQ--YVAAGDLRALDTVTNVLNFIKLQ 1875
Query: 761 K 761
K
Sbjct: 1876 K 1876
Score = 35.4 bits (81), Expect = 0.12
Identities = 41/215 (19%), Positives = 67/215 (31%), Gaps = 51/215 (23%)
Query: 407 GVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGA 466
G ++L V NP +T IH +K N + ++ + G+ + F E+
Sbjct: 1658 GFSILDIVINNP-VNLT-IHFGGEKGKRIRENYSAMIFETIVDGKLKTEKI---FKEINE 1712
Query: 467 EATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDD--- 523
+T Y + TQF P T +E +AF + G+ +D
Sbjct: 1713 HSTSYTFRSEKGLLSATQFTQPALTL-MEKAAFED-------L----KSKGLIPADATFA 1760
Query: 524 ------YS--VHN-DVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDG-NPA 573
Y+ DV E ++V +R V V R + NP
Sbjct: 1761 GHSLGEYAALASLADVMSIES--LVEVV---FYRGMTMQVAVPRDELGRSNYGMIAINPG 1815
Query: 574 PEITWIHEDS-DKVV-------G--------NSPN 592
+++ VV G N N
Sbjct: 1816 RVAASFSQEALQYVVERVGKRTGWLVEIVNYNVEN 1850
Score = 34.6 bits (79), Expect = 0.21
Identities = 69/476 (14%), Positives = 119/476 (25%), Gaps = 172/476 (36%)
Query: 629 RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688
RP +SH G +E +P + + + L+E
Sbjct: 7 RPLTLSH-------GS---LEHV-LLVP------------------TASFFIASQ-LQEQ 36
Query: 689 IKSTLIIRESRHDHFGVYNCSVSNP--------YGSDSVEIMLKPQKSFPLLLILTGVIG 740
L + F + + Y S VE F +L L
Sbjct: 37 FNKIL---PEPTEGFAADDEPTTPAELVGKFLGYVSSLVEP--SKVGQFDQVLNL----- 86
Query: 741 CVVILVALTMVVILCQRKVKKPPPGNGIEHHVTADGEKNQCKESDNSSNISDIKLEFRTG 800
L L GN I H + A + + + IK + T
Sbjct: 87 ---CLTEFE-NCYLE---------GNDI-HALAAKLLQENDTTLVKTKEL--IK-NYITA 129
Query: 801 SSVSNVHLDYAGHDS------ETGSESVHTRIGVPLAGPVPMDQ------------RYHR 842
++ D +S G+ + G G Q Y
Sbjct: 130 RIMAKRPFD-KKSNSALFRAVGEGNAQLVAIFG----G-----QGNTDDYFEELRDLYQT 179
Query: 843 YSS--ADFADAVFPSLKP--------DGHNNNGFVFSDFIRDYNQTLPK--LAPSP-HLP 889
Y D +L + G +++ + + T K L P P
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP 239
Query: 890 P----SLSNSVI---VTDKTPPP--SHLT--------------IS-SNSVDPRYSA---- 921
L++ V+ + TP S+L I+ ++S + + +
Sbjct: 240 LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA 299
Query: 922 -------------TYGNPYLRQSPNLPPPHTGQPPPPPYSSVR--------------NGA 954
Y N L S + P P S+ N
Sbjct: 300 ITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSH 359
Query: 955 LPQATR----LPSSPTSQFIVPNNTNHSTSIKRGTLATHVPTKVRQQVVCFQSKVE 1006
LP + L + +V + S+ L + K + QS++
Sbjct: 360 LPAGKQVEISLVNGAK-NLVV---SGPPQSLYG--LNLTL-RKAKAPSGLDQSRIP 408
Score = 32.3 bits (73), Expect = 1.2
Identities = 42/231 (18%), Positives = 77/231 (33%), Gaps = 88/231 (38%)
Query: 233 KYAP---KVQVSVI-GSNRLV--------EGTDVRLYCKAEANPSHMKYRWYINDQ---- 276
+ P +V++S++ G+ LV G ++ L KA+A PS + DQ
Sbjct: 358 SHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL-RKAKA-PSGL-------DQSRIP 408
Query: 277 -------------PVPAA------ASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVE 317
PV + A++L ++ + + S ++Q+ V + +
Sbjct: 409 FSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVK-NNVSFNAKDIQIPVYDTF---D 464
Query: 318 GTDVRLYCKAEANPSHMKYRWYINDQPV--PAA--ASATELYLTNITRHQHDSIVKCEVH 373
G+D+R+ + I PV AT H I+
Sbjct: 465 GSDLRVL-SGSISERI--VDC-IIRLPVKWETTTQFKAT-----------H--IL----- 502
Query: 374 NDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLC--DVDGNPAPEI 422
D G S +T+ + G GV ++ +D NP +
Sbjct: 503 -DFGPGGASGLGVLTH-----------RNKDGTGVRVIVAGTLDINPDDDY 541
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus
receptor, cell adhesion, integrin ligand, glycopr LFA-1
ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A
1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 54.3 bits (130), Expect = 2e-08
Identities = 25/189 (13%), Positives = 52/189 (27%), Gaps = 32/189 (16%)
Query: 32 MEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFD-RYAMIGSDEEGDY 90
+ P G V + C L G + G+
Sbjct: 4 VSPSKVILPRGGSVLVTCSTS---------------CDQPKLLGIETPLPKKELLLPGNN 48
Query: 91 SLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDRE 150
+ +D++ C + + LTV P+ + + ++
Sbjct: 49 RKVYELSNVQEDSQPMCYSNCP----DGQSTAKTFLTVYWTPERVELAPLPSWQP-VGKQ 103
Query: 151 IELECISANGKPPA--EITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHN 208
+ L C G P A + + G + E + T + +++HH
Sbjct: 104 LTLRCQVEGGAPRAQLTVVLLRG-EKELKREPAVGEP--------AEVTTTVLVRRDHHG 154
Query: 209 TTFTCQAQN 217
F+C+ +
Sbjct: 155 AQFSCRTEL 163
Score = 51.3 bits (122), Expect = 2e-07
Identities = 26/178 (14%), Positives = 52/178 (29%), Gaps = 12/178 (6%)
Query: 548 RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHE-DSDKVVGNSPNLTLLMTSD-DLAGR 605
P V + RG V + C + + +++ N + S+ +
Sbjct: 3 SVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQ 62
Query: 606 YYCKASVMGF-PEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWS 664
C ++ TVY ++ + G + C P ++T
Sbjct: 63 PMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVV 122
Query: 665 -YRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEI 721
RGE+ E + E + T + R H ++C +E+
Sbjct: 123 LLRGEKELKR--------EPAVGEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQGLEL 172
Score = 45.1 bits (106), Expect = 3e-05
Identities = 19/127 (14%), Positives = 38/127 (29%), Gaps = 4/127 (3%)
Query: 394 RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHE-DSDKVVGNSPNLTLLMTSD-DLAGR 451
P V + RG V + C + + +++ N + S+ +
Sbjct: 3 SVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQ 62
Query: 452 YYCKASVMGF-PEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWS 510
C ++ TVY ++ + G + C P ++T
Sbjct: 63 PMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVV 122
Query: 511 -YRGEEI 516
RGE+
Sbjct: 123 LLRGEKE 129
Score = 41.6 bits (97), Expect = 4e-04
Identities = 31/164 (18%), Positives = 57/164 (34%), Gaps = 16/164 (9%)
Query: 306 QVSVIGSNRLVE-GTDVRLYCKAE-ANPSHMKYRWYINDQPVPAAASATELY-LTNITRH 362
Q SV S ++ G V + C P + + + + + ++Y L+N+
Sbjct: 1 QTSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQ-- 58
Query: 363 QHDSIVKCEVHNDVGKSEDSETLDVTYGPRF-RARPYSVQVDRGAGVNLLCDVDG-NPAP 420
DS C + G+S L V + P P G + L C V+G P
Sbjct: 59 -EDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRA 117
Query: 421 EITW--------IHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKA 456
++T + + T+L+ D ++ C+
Sbjct: 118 QLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRT 161
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 57.1 bits (138), Expect = 2e-08
Identities = 26/105 (24%), Positives = 34/105 (32%), Gaps = 13/105 (12%)
Query: 629 RPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTW-SYRGEEIGVGSSDD-YSVLEDPL 685
P I+ R G A ++C PP V W G + S SVL D
Sbjct: 352 APFIMDAPRDLNISEGRMAELKCRT---PPMSSVKWLLPNGTVLSHASRHPRISVLND-- 406
Query: 686 KEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFP 730
TL GVY C V+N G+ + L +
Sbjct: 407 -----GTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGT 446
Score = 47.0 bits (112), Expect = 2e-05
Identities = 18/102 (17%), Positives = 28/102 (27%), Gaps = 15/102 (14%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPN----------LT 440
P P + + G L C P + W+ + + S + L
Sbjct: 353 PFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGTLN 410
Query: 441 LLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISH 481
G Y C + V G A A + + T H
Sbjct: 411 FSHVLLSDTGVYTCMVTNVAG--NSNASAYLNVSTAGTHHHH 450
Score = 47.0 bits (112), Expect = 2e-05
Identities = 18/102 (17%), Positives = 28/102 (27%), Gaps = 15/102 (14%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPN----------LT 594
P P + + G L C P + W+ + + S + L
Sbjct: 353 PFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGTLN 410
Query: 595 LLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISH 635
G Y C + V G A A + + T H
Sbjct: 411 FSHVLLSDTGVYTCMVTNVAG--NSNASAYLNVSTAGTHHHH 450
Score = 45.9 bits (109), Expect = 5e-05
Identities = 21/105 (20%), Positives = 34/105 (32%), Gaps = 14/105 (13%)
Query: 33 EPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSL 92
P+D G L CR ++W + + + S R ++ D +L
Sbjct: 358 APRDLNISEGRMAELKCRT-PPMSSVKWLLPNGTV--LSHASRHPRISV-----LNDGTL 409
Query: 93 EIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV--LVPPDPP 135
V+L D Y C + T + G + A L V
Sbjct: 410 NFSHVLLSDTGVYTC-MVTNVAGN---SNASAYLNVSTAGTHHHH 450
Score = 44.4 bits (105), Expect = 2e-04
Identities = 25/98 (25%), Positives = 38/98 (38%), Gaps = 11/98 (11%)
Query: 133 DPPRIV-QGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRR 191
P I+ L +E R EL+C P + + W+ GTV+S+ AS R
Sbjct: 351 SAPFIMDAPRDLNISEGRMAELKC---RTPPMSSVKWLLPNGTVLSH------ASRHPRI 401
Query: 192 TTVKS-TLVLTPKKEHHNTTFTCQAQNTADRTYKVARL 228
+ + TL + +TC N A + A L
Sbjct: 402 SVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYL 439
Score = 37.8 bits (88), Expect = 0.017
Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 13/86 (15%)
Query: 312 SNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATE---------LYLTNITRH 362
+ EG L C+ S +W + + V + AS L +++
Sbjct: 361 DLNISEGRMAELKCRTPPMSS---VKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLL- 416
Query: 363 QHDSIVKCEVHNDVGKSEDSETLDVT 388
+ C V N G S S L+V+
Sbjct: 417 SDTGVYTCMVTNVAGNSNASAYLNVS 442
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 56.3 bits (136), Expect = 3e-08
Identities = 24/98 (24%), Positives = 35/98 (35%), Gaps = 12/98 (12%)
Query: 629 RPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTW-SYRGEEIGVGSSDD-YSVLEDPL 685
P I+ G A ++C A S V+W + G + G+ +VL D
Sbjct: 341 APVIVEPPADLNVTEGMAAELKCRA-STSLTS-VSWITPNGTVMTHGAYKVRIAVLSD-- 396
Query: 686 KEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723
TL G+Y C VSN G+ + L
Sbjct: 397 -----GTLNFTNVTVQDTGMYTCMVSNSVGNTTASATL 429
Score = 47.8 bits (114), Expect = 1e-05
Identities = 23/104 (22%), Positives = 32/104 (30%), Gaps = 12/104 (11%)
Query: 33 EPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSL 92
P D G L CR + W + + H + R A+ D +L
Sbjct: 347 PPADLNVTEGMAAELKCRASTSLTSVSWITPNGTVMTHG--AYKVRIAV-----LSDGTL 399
Query: 93 EIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVL-VPPDPP 135
V + D Y C VS +G + ATL V
Sbjct: 400 NFTNVTVQDTGMYTCMVSN-SVGN---TTASATLNVTGTHHHHH 439
Score = 45.1 bits (107), Expect = 8e-05
Identities = 23/98 (23%), Positives = 35/98 (35%), Gaps = 9/98 (9%)
Query: 132 PDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRR 191
P + L TE EL+C ++ ++WI GTVM++ + R
Sbjct: 340 YAPVIVEPPADLNVTEGMAAELKCRAST--SLTSVSWITPNGTVMTH------GAYKVRI 391
Query: 192 TTVKS-TLVLTPKKEHHNTTFTCQAQNTADRTYKVARL 228
+ TL T +TC N+ T A L
Sbjct: 392 AVLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATL 429
Score = 44.0 bits (104), Expect = 2e-04
Identities = 13/77 (16%), Positives = 20/77 (25%), Gaps = 11/77 (14%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPN----------LT 440
P P + V G L C ++WI + + + L
Sbjct: 342 PVIVEPPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLN 400
Query: 441 LLMTSDDLAGRYYCKAS 457
+ G Y C S
Sbjct: 401 FTNVTVQDTGMYTCMVS 417
Score = 44.0 bits (104), Expect = 2e-04
Identities = 13/77 (16%), Positives = 20/77 (25%), Gaps = 11/77 (14%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPN----------LT 594
P P + V G L C ++WI + + + L
Sbjct: 342 PVIVEPPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLN 400
Query: 595 LLMTSDDLAGRYYCKAS 611
+ G Y C S
Sbjct: 401 FTNVTVQDTGMYTCMVS 417
Score = 34.0 bits (78), Expect = 0.28
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 12/83 (14%)
Query: 315 LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATE---------LYLTNITRHQHD 365
+ EG L C+A + + + W + V + L TN+T Q
Sbjct: 353 VTEGMAAELKCRASTSLTSV--SWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTV-QDT 409
Query: 366 SIVKCEVHNDVGKSEDSETLDVT 388
+ C V N VG + S TL+VT
Sbjct: 410 GMYTCMVSNSVGNTTASATLNVT 432
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 51.5 bits (123), Expect = 4e-08
Identities = 28/106 (26%), Positives = 40/106 (37%), Gaps = 13/106 (12%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRV----IDKTGVLQWTKD---DFALGPHRNLSGFDRYAMI 82
F M PQD VG +T RV + K V++W K D + ++L D Y
Sbjct: 7 FVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDR- 65
Query: 83 GSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
+ + + L I Y+C+VST LTV
Sbjct: 66 -ASKVYLFELHITDAQPAFTGSYRCEVSTKD-KF---DCSNFNLTV 106
Score = 49.2 bits (117), Expect = 3e-07
Identities = 14/88 (15%), Positives = 27/88 (30%), Gaps = 7/88 (7%)
Query: 643 GDTARVECSAFSIPPPEK--VTWSYRGE--EIGVGSSDDYSVLE--DPLKEGIKSTLIIR 696
G + + V W ++G+ ++ + + D + L I
Sbjct: 19 GGSITFSARVAGASLLKPPVVKW-FKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHIT 77
Query: 697 ESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
+++ G Y C VS D L
Sbjct: 78 DAQPAFTGSYRCEVSTKDKFDCSNFNLT 105
Score = 41.5 bits (97), Expect = 1e-04
Identities = 16/89 (17%), Positives = 21/89 (23%), Gaps = 23/89 (25%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNP---APEITWIH----------------EDSDK 431
F RP +V G + V G P + W DS
Sbjct: 5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYD 64
Query: 432 VVGNSPNLTLLM---TSDDLAGRYYCKAS 457
L + G Y C+ S
Sbjct: 65 RASKVYLFELHITDAQPAF-TGSYRCEVS 92
Score = 41.5 bits (97), Expect = 1e-04
Identities = 16/89 (17%), Positives = 21/89 (23%), Gaps = 23/89 (25%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNP---APEITWIH----------------EDSDK 585
F RP +V G + V G P + W DS
Sbjct: 5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYD 64
Query: 586 VVGNSPNLTLLM---TSDDLAGRYYCKAS 611
L + G Y C+ S
Sbjct: 65 RASKVYLFELHITDAQPAF-TGSYRCEVS 92
Score = 30.4 bits (68), Expect = 1.0
Identities = 9/91 (9%), Positives = 19/91 (20%), Gaps = 18/91 (19%)
Query: 316 VEGTDVRLYCKAEANPSHMKY--RWYINDQPVPAAASATELYLTNITRHQHDSIV----- 368
G + + +W+ ++ L L + +
Sbjct: 17 TVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHI 76
Query: 369 -----------KCEVHNDVGKSEDSETLDVT 388
+CEV + L V
Sbjct: 77 TDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107
Score = 28.8 bits (64), Expect = 2.9
Identities = 11/90 (12%), Positives = 19/90 (21%), Gaps = 7/90 (7%)
Query: 146 TEDREIELECISANGKPPA---EITWIDGTGTVM---SNVRVTEEASVDGRRTTVKSTLV 199
T I G + W G + + S D L
Sbjct: 17 TVGGSITFSA-RVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELH 75
Query: 200 LTPKKEHHNTTFTCQAQNTADRTYKVARLK 229
+T + ++ C+ L
Sbjct: 76 ITDAQPAFTGSYRCEVSTKDKFDCSNFNLT 105
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 50.4 bits (120), Expect = 1e-07
Identities = 27/118 (22%), Positives = 37/118 (31%), Gaps = 21/118 (17%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTG---VLQWTKDDFAL-----------GPHRNLSGFDRY 79
+ G VTLPC G + W + G RY
Sbjct: 4 HTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRY 63
Query: 80 AMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDP-PR 136
+ G+ EG+ SL I ++ D Y C V E F + V P+ PR
Sbjct: 64 QLKGNISEGNVSLTIENTVVGDGGPYCCVV------EIPGAFHFVDYMLEVKPELVPR 115
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 54.4 bits (130), Expect = 2e-07
Identities = 23/181 (12%), Positives = 44/181 (24%), Gaps = 8/181 (4%)
Query: 542 TYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDD 601
T+ F S +N+ V+ P W N L + +
Sbjct: 74 THCIDFHYFVSSKSNSPPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPN 133
Query: 602 LAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFG----IPGDTARVECSAFSIPP 657
+ + + + L T H + G A +CSA
Sbjct: 134 FYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTV 193
Query: 658 PEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD 717
+G ++ + V ++ + + G Y C + G
Sbjct: 194 AG-DRLWLQGIDVRDAPLKEIKVTSSR---RFIASFNVVNTTKRDAGKYRCMIRTEGGVG 249
Query: 718 S 718
Sbjct: 250 I 250
Score = 42.8 bits (100), Expect = 5e-04
Identities = 31/190 (16%), Positives = 54/190 (28%), Gaps = 19/190 (10%)
Query: 32 MEPQDQTAVVGSRVTLPCRVI-DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDY 90
+ Q+ G T C I + + + + S
Sbjct: 169 LRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAP-----LKEIKVTSSRRFIA 223
Query: 91 SLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDRE 150
S + D +Y+C + T G S +A L V PP P Q ++
Sbjct: 224 SFNVVNTTKRDAGKYRCMIRT-EGGV--GISNYAELVVKEPPVPIAPPQLASV-GATYLW 279
Query: 151 IELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTT 210
I+L S NG P ++ ++ + VD + L P E+
Sbjct: 280 IQLNANSINGDGPIVAREVEYC---TASGSWNDRQPVDSTSYKIGH---LDPDTEYE--- 330
Query: 211 FTCQAQNTAD 220
+ +
Sbjct: 331 ISVLLTRPGE 340
Score = 40.9 bits (95), Expect = 0.002
Identities = 20/159 (12%), Positives = 39/159 (24%), Gaps = 5/159 (3%)
Query: 388 TYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDD 447
T+ F S +N+ V+ P W N L + +
Sbjct: 74 THCIDFHYFVSSKSNSPPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPN 133
Query: 448 LAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFG----IPGDTARVECSAFSIPP 503
+ + + + L T H + G A +CSA
Sbjct: 134 FYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTV 193
Query: 504 PEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVT 542
+G ++ + V + ++ T
Sbjct: 194 AG-DRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTT 231
Score = 37.1 bits (85), Expect = 0.030
Identities = 15/133 (11%), Positives = 33/133 (24%), Gaps = 6/133 (4%)
Query: 91 SLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDRE 150
L I + +++G G AI + P ++ + +
Sbjct: 124 ELAISTFWPNFYQVIFEVITSGHQGYLAIDE--VKVLGHPCTRTPHFLRIQNVEVNAGQF 181
Query: 151 IELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTT 210
+C A G+ A V + + R + + T +
Sbjct: 182 ATFQCS-AIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKR---DAGK 237
Query: 211 FTCQAQNTADRTY 223
+ C +
Sbjct: 238 YRCMIRTEGGVGI 250
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 49.1 bits (117), Expect = 4e-07
Identities = 21/114 (18%), Positives = 33/114 (28%), Gaps = 25/114 (21%)
Query: 38 TAVVGSRVTLPCRVIDKTG-----VLQWTKDDFALG--------------PHRNLSGF-D 77
G LPC+ ++W
Sbjct: 16 EKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKG 75
Query: 78 RYAMIGSD-EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLV 130
R +D + GD S+ + + L D YQC+V P + ++ L VLV
Sbjct: 76 RVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKA----PGVANKKIHLVVLV 125
Score = 36.4 bits (84), Expect = 0.009
Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 25/109 (22%)
Query: 639 FGIPGDTARVECSAFSIPPPEK----VTWS---------------YRGEEIGVGSSDDY- 678
G+TA + C F++ P ++ + W Y G++I D
Sbjct: 16 EKAKGETAYLPCK-FTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLK 74
Query: 679 ---SVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
+ LK G +++ + + G Y C V G + +I L
Sbjct: 75 GRVHFTSNDLKSG-DASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLV 122
Score = 30.2 bits (68), Expect = 1.1
Identities = 22/129 (17%), Positives = 44/129 (34%), Gaps = 29/129 (22%)
Query: 126 LTVLVPPDPPRIVQGDTLYTTEDREIELECI---SANGKPPAEITWIDGTGT-------- 174
L++ P + +G+T L C S + P +I W+
Sbjct: 6 LSITTPEEMIEKAKGET--------AYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVI 57
Query: 175 -VMSNVRVTEEASVD--GRRTTVKS-------TLVLTPKKEHHNTTFTCQAQNTADRTYK 224
+ S ++ ++ D GR + ++ +T + T+ C+ + K
Sbjct: 58 ILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANK 117
Query: 225 VARLKLLVK 233
L +LVK
Sbjct: 118 KIHLVVLVK 126
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 48.3 bits (115), Expect = 4e-07
Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 14/98 (14%)
Query: 629 RPTIISHRTQFGI---PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPL 685
+P +++ Q PG C+A S P + W+ + D++
Sbjct: 8 KPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFN------ 61
Query: 686 KEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723
L IR + G Y C+ SN + D L
Sbjct: 62 -----GILTIRNVQPSDAGTYVCTGSNMFAMDQGTATL 94
Score = 45.2 bits (107), Expect = 4e-06
Identities = 13/105 (12%), Positives = 25/105 (23%), Gaps = 11/105 (10%)
Query: 124 ATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTE 183
A L P + + + ++ C + + P + W +
Sbjct: 1 APLAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLP------ 54
Query: 184 EASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARL 228
R L + + T+ C N A L
Sbjct: 55 -----SRAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATL 94
Score = 44.8 bits (106), Expect = 6e-06
Identities = 27/102 (26%), Positives = 33/102 (32%), Gaps = 23/102 (22%)
Query: 33 EPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAMIGSDEEG 88
E + Q+ G+ VT C K+ L WT+ P R D G
Sbjct: 16 EQRSQSVRPGADVTFICTA--KSKSPAYTLVWTRLHNGKLPSRA-----------MDFNG 62
Query: 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLV 130
L I V D Y C S A+ ATL V V
Sbjct: 63 --ILTIRNVQPSDAGTYVCTGSNMF----AMDQGTATLHVQV 98
Score = 43.6 bits (103), Expect = 2e-05
Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 396 RPYSVQVDRGAGVNLLCDVD-GNPAPEITWIHEDSDKVVGNS--PNLTLLMTS---DDLA 449
S V GA V +C +PA + W + K+ + N L + + D A
Sbjct: 16 EQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIRNVQPSD-A 74
Query: 450 GRYYCKAS 457
G Y C S
Sbjct: 75 GTYVCTGS 82
Score = 43.6 bits (103), Expect = 2e-05
Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 550 RPYSVQVDRGAGVNLLCDVD-GNPAPEITWIHEDSDKVVGNS--PNLTLLMTS---DDLA 603
S V GA V +C +PA + W + K+ + N L + + D A
Sbjct: 16 EQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIRNVQPSD-A 74
Query: 604 GRYYCKAS 611
G Y C S
Sbjct: 75 GTYVCTGS 82
Score = 31.3 bits (71), Expect = 0.33
Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 6/75 (8%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYIND-QPVPAAASAT--ELYLTNITRHQHDS-IVKCEV 372
G DV C A++ W +P+ A L + N+ D+ C
Sbjct: 24 PGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIRNVQP--SDAGTYVCTG 81
Query: 373 HNDVGKSEDSETLDV 387
N + + TL V
Sbjct: 82 SNMFAMDQGTATLHV 96
Score = 27.5 bits (61), Expect = 8.5
Identities = 17/89 (19%), Positives = 26/89 (29%), Gaps = 22/89 (24%)
Query: 475 RPTIISHRTQFGI---PGDTARVECSAFSIPPPEKVTWSYRGEEI--------------- 516
+P +++ Q PG C+A S P + W+
Sbjct: 8 KPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIR 67
Query: 517 GVGSSD--DYS--VHNDVGKSEDSETLDV 541
V SD Y N + + TL V
Sbjct: 68 NVQPSDAGTYVCTGSNMFAMDQGTATLHV 96
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 48.3 bits (115), Expect = 5e-07
Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 12/86 (13%)
Query: 38 TAVVGSRVTLPCRVIDKTG------VLQWTKDD------FALGPHRNLSGFDRYAMIGSD 85
A LPC+ + V+ W + LG + S +Y S
Sbjct: 5 QAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSF 64
Query: 86 EEGDYSLEIYPVMLDDDARYQCQVST 111
+ ++L ++ + + D YQC +
Sbjct: 65 DSDSWTLRLHNLQIKDKGLYQCIIHH 90
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 48.6 bits (115), Expect = 8e-07
Identities = 17/105 (16%), Positives = 31/105 (29%), Gaps = 24/105 (22%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIK------------ 690
G+ R++ P P V W + + + + +
Sbjct: 33 GNKLRLDVPISGDPAPT-VIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETE 91
Query: 691 -----------STLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
S + + + GVY +V NP G D V + +K
Sbjct: 92 GRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVK 136
Score = 36.7 bits (84), Expect = 0.009
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD 430
P ++ V G + L + G+PAP + W +
Sbjct: 19 DCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQ 58
Score = 36.7 bits (84), Expect = 0.009
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD 584
P ++ V G + L + G+PAP + W +
Sbjct: 19 DCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQ 58
Score = 32.4 bits (73), Expect = 0.26
Identities = 16/122 (13%), Positives = 29/122 (23%), Gaps = 26/122 (21%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRVI-DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDE-- 86
P V G+++ L + D + W K D G +
Sbjct: 21 PGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEW 80
Query: 87 -------------------EGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLT 127
+ + +D+ Y V +GE T+
Sbjct: 81 VFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKN-PVGE---DQVNLTVK 136
Query: 128 VL 129
V+
Sbjct: 137 VI 138
Score = 29.3 bits (65), Expect = 2.7
Identities = 9/62 (14%), Positives = 15/62 (24%), Gaps = 1/62 (1%)
Query: 489 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFR 548
G+ R++ P P V W + + + D D
Sbjct: 33 GNKLRLDVPISGDPAPT-VIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETE 91
Query: 549 AR 550
R
Sbjct: 92 GR 93
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 51.5 bits (122), Expect = 9e-07
Identities = 21/140 (15%), Positives = 40/140 (28%), Gaps = 13/140 (9%)
Query: 86 EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYT 145
G+ + + V + Y + L L V PP +
Sbjct: 250 WTGNGTFWLPRVQPFQEGTYLATIHLPYLQ----GQVTLELAVYKPPKVSLMPATLARAA 305
Query: 146 TEDREIELECISANGKP--PAEITWIDGTGTVMSNVRVTEEASVDGRRT------TVKST 197
+ EL C+ ++ P E+ W G + + + + R ++
Sbjct: 306 PGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGH 365
Query: 198 LVLTP-KKEHHNTTFTCQAQ 216
L P E H + C+
Sbjct: 366 LQPPPVTTEQHGARYACRIH 385
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 48.0 bits (114), Expect = 1e-06
Identities = 24/121 (19%), Positives = 36/121 (29%), Gaps = 20/121 (16%)
Query: 38 TAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGSD-------- 85
A+VG LPCR+ + W + F+ H +G D+ A +
Sbjct: 17 RALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELL 76
Query: 86 ----EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGD 141
EG +L I V D+ Y C L V P +
Sbjct: 77 KESIGEGKVALRIQNVRFSDEGGYTCFFRDH----SYQEEAAVELKVEDPFYWINPGRSR 132
Query: 142 T 142
+
Sbjct: 133 S 133
Score = 32.2 bits (73), Expect = 0.34
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 5/76 (6%)
Query: 653 FSIPPPEKVTWSYRGEEIGVGSSDDY----SVLEDPLKEGIKSTLIIRESRHDHFGVYNC 708
+ P V G++ + +Y +L++ + EG K L I+ R G Y C
Sbjct: 44 YRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEG-KVALRIQNVRFSDEGGYTC 102
Query: 709 SVSNPYGSDSVEIMLK 724
+ + + LK
Sbjct: 103 FFRDHSYQEEAAVELK 118
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 51.4 bits (123), Expect = 1e-06
Identities = 20/76 (26%), Positives = 26/76 (34%), Gaps = 7/76 (9%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
G +A C + PP VTW E+ S Y + G L I + D
Sbjct: 497 GQSANFYCRVIASSPPV-VTWHKDDRELK--QSVKYMKRYN----GNDYGLTINRVKGDD 549
Query: 703 FGVYNCSVSNPYGSDS 718
G Y N YG+
Sbjct: 550 KGEYTVRAKNSYGTKE 565
Score = 49.1 bits (117), Expect = 6e-06
Identities = 26/106 (24%), Positives = 35/106 (33%), Gaps = 13/106 (12%)
Query: 24 QYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTG-VLQWTKDDFALGPHRNLSGFDRYAMI 82
+ +F ++P G CRVI + V+ W KDD R L +Y
Sbjct: 479 SEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDD------RELKQSVKYMK- 531
Query: 83 GSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
DY L I V DD Y + G + L V
Sbjct: 532 -RYNGNDYGLTINRVKGDDKGEYTVRAKNS-YGT---KEEIVFLNV 572
Score = 46.4 bits (110), Expect = 4e-05
Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 9/90 (10%)
Query: 377 GKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDK 431
D+ PRF +PY +V G N C V + P +TW +D S K
Sbjct: 469 YSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVK 528
Query: 432 VV----GNSPNLTLLMTSDDLAGRYYCKAS 457
+ GN LT+ D G Y +A
Sbjct: 529 YMKRYNGNDYGLTINRVKGDDKGEYTVRAK 558
Score = 46.4 bits (110), Expect = 4e-05
Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 9/90 (10%)
Query: 531 GKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDK 585
D+ PRF +PY +V G N C V + P +TW +D S K
Sbjct: 469 YSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVK 528
Query: 586 VV----GNSPNLTLLMTSDDLAGRYYCKAS 611
+ GN LT+ D G Y +A
Sbjct: 529 YMKRYNGNDYGLTINRVKGDDKGEYTVRAK 558
Score = 40.2 bits (94), Expect = 0.004
Identities = 21/140 (15%), Positives = 40/140 (28%), Gaps = 18/140 (12%)
Query: 265 SHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQ--------VSVIGSNRLV 316
+K ++ +P+P + R Q SI + +
Sbjct: 436 DSIKTKYDAWPEPLPPLGRISNYSSLRKHRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVG 495
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT--------ELYLTNITRHQHDSIV 368
EG YC+ A+ W+ +D+ + + L + +
Sbjct: 496 EGQSANFYCRVIASSPP-VVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKG-DDKGEY 553
Query: 369 KCEVHNDVGKSEDSETLDVT 388
N G E+ L+VT
Sbjct: 554 TVRAKNSYGTKEEIVFLNVT 573
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 50.3 bits (120), Expect = 2e-06
Identities = 42/229 (18%), Positives = 67/229 (29%), Gaps = 33/229 (14%)
Query: 533 SEDSETLD--VTYG---PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV- 586
S + G P A P +V V RG V L C ED +
Sbjct: 8 SGSDDDDKGSHMGGQDKPFLSAWPSAV-VPRGGHVTLRCHYRH-RFNNFMLYKEDRIHIP 65
Query: 587 ----VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAE--ATVYL-----KGRPTIISH 635
+ + + AG Y C+ S P + V + +P++++H
Sbjct: 66 IFHGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAH 125
Query: 636 RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLII 695
G+ ++C S E G S D ++ K+ I
Sbjct: 126 PGPLVKSGERVILQCW--SDIMFEHFFLHKEGI-----SKDPSRLVGQIHDGVSKANFSI 178
Query: 696 RESRHDHFGVYNCSVSNPYG-------SDSVEIMLKPQKSFPLLLILTG 737
G Y C S + SD ++I++ P L G
Sbjct: 179 GPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPG 227
Score = 46.0 bits (109), Expect = 3e-05
Identities = 40/245 (16%), Positives = 63/245 (25%), Gaps = 30/245 (12%)
Query: 42 GSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDD 101
G VTL C + K+D P I S + PV
Sbjct: 38 GGHVTLRCHYRHRFNNFMLYKEDRIHIP------------IFHGRIFQESFNMSPVTTAH 85
Query: 102 DARYQCQVSTGILGEPAIRSRF---ATLTVLVPPDPPRIVQGDTLYTTEDREIELECISA 158
Y C+ S P S + V P ++ + L+C
Sbjct: 86 AGNYTCRGSHP--HSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGERVILQC--- 140
Query: 159 NGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNT 218
E ++ G R+ + K+ + P T+ C T
Sbjct: 141 WSDIMFEHFFLHKEGISKDPSRLVGQIHDGVS----KANFSIGPMMLALAGTYRCYGSVT 196
Query: 219 ADRTYKVAR---LKLLVKYAP-KVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYIN 274
A L ++V K +S ++ G V L C + S+ Y
Sbjct: 197 HTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGESVTLSC--SSRSSYDMYHLSRE 254
Query: 275 DQPVP 279
Sbjct: 255 GGAHE 259
Score = 41.4 bits (97), Expect = 0.001
Identities = 48/257 (18%), Positives = 75/257 (29%), Gaps = 55/257 (21%)
Query: 499 FSIPPPEKVTWSYRGEEIGVGSSDDYS-----VHNDVGKSEDSE--TLDVTYG---PRFR 548
F++ P VT ++ G Y+ H+ G S S + VT P
Sbjct: 76 FNMSP---VTTAHAGN---------YTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLL 123
Query: 549 ARPYSVQVDRGAGVNLLCDVDGNPA---------PEITWIHEDSDKVVGNSPNLTLLMTS 599
A P + V G V L C D + + N ++
Sbjct: 124 AHPGPL-VKSGERVILQCWSDIMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMM 182
Query: 600 DDLAGRYYCKASVMGFPEVGAE--ATVYLK-----GRPTIISHRTQFGIPGDTARVECSA 652
LAG Y C SV P + + + +P++ + G++ + CS+
Sbjct: 183 LALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGESVTLSCSS 242
Query: 653 FSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVS- 711
S + S G L K H G Y C S
Sbjct: 243 RS--SYDMYHLSREGGA-------HERRLPAVRKVNRTFQADFPLGPATHGGTYRCFGSF 293
Query: 712 --NPYG----SDSVEIM 722
+PY SD + +
Sbjct: 294 RHSPYEWSDPSDPLLVS 310
Score = 41.4 bits (97), Expect = 0.001
Identities = 35/179 (19%), Positives = 48/179 (26%), Gaps = 25/179 (13%)
Query: 307 VSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYIND----QPVPAAASATELYLTNITRH 362
+S S + G V L C + Y D ++ +T
Sbjct: 27 LSAWPSAVVPRGGHVTLRC--HYRHRFNNFMLYKEDRIHIPIFHGRIFQESFNMSPVTT- 83
Query: 363 QHDSIVKCEV---HNDVGKSEDSE--TLDVTYG---PRFRARPYSVQVDRGAGVNLLCDV 414
H C H+ G S S + VT P A P + V G V L C
Sbjct: 84 AHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPL-VKSGERVILQCWS 142
Query: 415 DGNPA---------PEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEV 464
D + + N ++ LAG Y C SV P
Sbjct: 143 DIMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQ 201
Score = 41.0 bits (96), Expect = 0.002
Identities = 38/294 (12%), Positives = 62/294 (21%), Gaps = 65/294 (22%)
Query: 228 LKLLVKYA-PKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYIND----QPVPAAA 282
K K +S S + G V L C + Y D
Sbjct: 14 DKGSHMGGQDKPFLSAWPSAVVPRGGHVTLRC--HYRHRFNNFMLYKEDRIHIPIFHGRI 71
Query: 283 SATELYLTNITRHQ--------------------------HDSIVKCEVQVSVIGSNRLV 316
++ +T + + + +
Sbjct: 72 FQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVK 131
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVP---------AAASATELYLTNITRHQHDS- 366
G V L C ++ H + + S + + +
Sbjct: 132 SGERVILQCWSDIMFEH--FFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLA--LAG 187
Query: 367 IVKCEV---HNDVGKSEDSETLDVT-----YGPRFRARPYSVQVDRGAGVNLLCDVDGNP 418
+C H S S+ LD+ P A+P V G V L C +
Sbjct: 188 TYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPK-VQAGESVTLSCSSRSSY 246
Query: 419 APEITWIHEDSDKV--------VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEV 464
E V + + G Y C S P
Sbjct: 247 DM-YHLSREGGAHERRLPAVRKVNRTFQADFPLGPATHGGTYRCFGSFRHSPYE 299
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 48.3 bits (115), Expect = 2e-06
Identities = 27/158 (17%), Positives = 44/158 (27%), Gaps = 17/158 (10%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDV 376
V L C + P YR L++ + R +C N
Sbjct: 21 LEKPVTLRC--QGPPGVDLYRLEKLSSSRYQ--DQAVLFIPAMKRS-LAGRYRCSYQNGS 75
Query: 377 GKSEDSETLDVT-----YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDK 431
S S+ L++ P A+P V G V L C + E
Sbjct: 76 LWSLPSDQLELVATGVFAKPSLSAQP-GPAVSSGGDVTLQCQTRYGFD-QFALYKEGDPA 133
Query: 432 VVGNSP-----NLTLLMTSDDLAGRYYCKASVMGFPEV 464
N + ++ + +G Y C + P +
Sbjct: 134 PYKNPERWYRASFPIITVTAAHSGTYRCYSFSSRDPYL 171
Score = 37.5 bits (87), Expect = 0.008
Identities = 32/189 (16%), Positives = 63/189 (33%), Gaps = 26/189 (13%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAG 604
P +A P S+ V V L C G P ++ + + S + L + LAG
Sbjct: 9 PSLQALPSSL-VPLEKPVTLRCQ--GPPGVDLYRLEKLSSSRYQDQAVLFIPAMKRSLAG 65
Query: 605 RYYCKASVMGFPEVGAEATV----YLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEK 660
RY C + ++ + +P++ + G ++C + ++
Sbjct: 66 RYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQ--TRYGFDQ 123
Query: 661 VTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCS---VSNPYG-- 715
G+ + + +++ I H G Y C +PY
Sbjct: 124 FALYKEGDPAPYKNPE----------RWYRASFPIITVTAAHSGTYRCYSFSSRDPYLWS 173
Query: 716 --SDSVEIM 722
SD +E++
Sbjct: 174 APSDPLELV 182
Score = 32.9 bits (75), Expect = 0.32
Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 3/93 (3%)
Query: 188 DGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAP-KVQVSVIGSN 246
R ++ L + K + C QN + + +L+L+ K +S
Sbjct: 44 SSSRYQDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGP 103
Query: 247 RLVEGTDVRLYCKAEANPSHMKYRWYINDQPVP 279
+ G DV L C + ++ Y P P
Sbjct: 104 AVSSGGDVTLQC--QTRYGFDQFALYKEGDPAP 134
Score = 32.1 bits (73), Expect = 0.58
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAG 450
P +A P S+ V V L C G P ++ + + S + L + LAG
Sbjct: 9 PSLQALPSSL-VPLEKPVTLRCQ--GPPGVDLYRLEKLSSSRYQDQAVLFIPAMKRSLAG 65
Query: 451 RYYC 454
RY C
Sbjct: 66 RYRC 69
Score = 31.3 bits (71), Expect = 1.1
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
Query: 682 EDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYG----SDSVEIMLKPQKSFPLLLILTG 737
+ ++ L I + G Y CS N SD +E++ + P L G
Sbjct: 43 LSSSRYQDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPG 102
Score = 29.8 bits (67), Expect = 2.8
Identities = 18/119 (15%), Positives = 32/119 (26%), Gaps = 20/119 (16%)
Query: 42 GSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDD 101
VTL C+ + + K S + L I +
Sbjct: 22 EKPVTLRCQGPPGVDLYRLEKLS------------------SSRYQDQAVLFIPAMKRSL 63
Query: 102 DARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANG 160
RY+C G ++ S L P + + ++ L+C + G
Sbjct: 64 AGRYRCSYQNG--SLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQTRYG 120
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 49.9 bits (118), Expect = 2e-06
Identities = 29/120 (24%), Positives = 43/120 (35%), Gaps = 20/120 (16%)
Query: 22 LAQYREQKFAMEPQDQTAVVGSRVTLPCRVI--DKTGVLQWTKDDFALGPHRNLSGFDRY 79
LA R + T++ G VTL C + + + W A G H + R+
Sbjct: 1 LAPRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPS-----RW 55
Query: 80 AMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQ 139
A +G L + V L D Y C + G L V VPP+ P++
Sbjct: 56 AGMGR------RLLLRSVQLHDSGNYSCYRAGRPAG-------TVHLLVDVPPEEPQLSC 102
Score = 45.6 bits (107), Expect = 5e-05
Identities = 27/176 (15%), Positives = 40/176 (22%), Gaps = 19/176 (10%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCD-VDGNPAPEITW------IHEDSDKVVGNSPNLTLLM 443
P + G V L C V+ + W + G L L
Sbjct: 7 PAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRS 66
Query: 444 TSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIP- 502
+G Y C + G P V + +S + V C
Sbjct: 67 VQLHDSGNYSCYRA--GRPAGTVHLLVDVPPEEPQLSCFR----KSPLSNVVCEWGPRST 120
Query: 503 --PPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQV 556
K R + + S L V G + Y V +
Sbjct: 121 PSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGD---SSFYIVSM 173
Score = 43.3 bits (101), Expect = 3e-04
Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 9/81 (11%)
Query: 632 IISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKS 691
++ +PGD+ + C V W R G S G+
Sbjct: 10 EVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWA---------GMGR 60
Query: 692 TLIIRESRHDHFGVYNCSVSN 712
L++R + G Y+C +
Sbjct: 61 RLLLRSVQLHDSGNYSCYRAG 81
Score = 41.4 bits (96), Expect = 0.001
Identities = 27/184 (14%), Positives = 42/184 (22%), Gaps = 17/184 (9%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCD-VDGNPAPEITW------IHEDSDKVVGNSPNLTLLM 597
P + G V L C V+ + W + G L L
Sbjct: 7 PAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRS 66
Query: 598 TSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIP- 656
+G Y C + G P V + +S + V C
Sbjct: 67 VQLHDSGNYSCYRA--GRPAGTVHLLVDVPPEEPQLSCFR----KSPLSNVVCEWGPRST 120
Query: 657 --PPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPY 714
K R + + L + E + V V++
Sbjct: 121 PSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVS-MCVASSV 179
Query: 715 GSDS 718
GS
Sbjct: 180 GSKF 183
Score = 34.8 bits (79), Expect = 0.11
Identities = 28/176 (15%), Positives = 51/176 (28%), Gaps = 22/176 (12%)
Query: 235 APKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPA-----AASATELYL 289
A V S+ G + V L C + W + + A L L
Sbjct: 12 ARGVLTSLPGDS-------VTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLL 64
Query: 290 TNITRHQHDSIVKCEVQVSVIGSNRLVEGT---DVRLYCKAEANPSHMKYRWYINDQPVP 346
++ H + C G+ L+ + +L C ++ S++ W P
Sbjct: 65 RSVQLHDSGNYS-CYRAGRPAGTVHLLVDVPPEEPQLSCFRKSPLSNVVCEW----GPRS 119
Query: 347 AAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQV 402
+ T+ L R +S + E + P + Y V +
Sbjct: 120 TPSLTTKAVLLV--RKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSM 173
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 47.9 bits (113), Expect = 3e-06
Identities = 30/180 (16%), Positives = 52/180 (28%), Gaps = 22/180 (12%)
Query: 551 PYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSD-DLAGRYYCK 609
Y V + G V L C +D + W + + +L L S+ + +G Y C
Sbjct: 7 EYKVSIS-GTSVELTCPLD--SDENLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCY 63
Query: 610 ASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEE 669
+YLK R + D A+ + + K + +
Sbjct: 64 TP-----ASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDG 118
Query: 670 IGVGSS---------DDYSVLED----PLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGS 716
S L+D K+T + + D G Y C + +
Sbjct: 119 SRGDGSVLLTCGLTDKTIKWLKDGSIISPLNATKNTWNLGNNAKDPRGTYQCQGAKETSN 178
Score = 46.0 bits (108), Expect = 1e-05
Identities = 35/218 (16%), Positives = 58/218 (26%), Gaps = 54/218 (24%)
Query: 397 PYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSD-DLAGRYYCK 455
Y V + G V L C +D + W + + +L L S+ + +G Y C
Sbjct: 7 EYKVSIS-GTSVELTCPLD--SDENLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCY 63
Query: 456 ASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEE 515
+YLK R + D A+ + + K
Sbjct: 64 TP-----ASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAK------- 111
Query: 516 IGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPE 575
V D + + S V L C +
Sbjct: 112 --------NLVQVDGSRGDGS-------------------------VLLTCGLTDKT--- 135
Query: 576 ITWIHEDS--DKVVGNSPNLTLLMTSDDLAGRYYCKAS 611
I W+ + S + L + D G Y C+ +
Sbjct: 136 IKWLKDGSIISPLNATKNTWNLGNNAKDPRGTYQCQGA 173
Score = 44.9 bits (105), Expect = 3e-05
Identities = 30/167 (17%), Positives = 49/167 (29%), Gaps = 34/167 (20%)
Query: 318 GTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHN--- 374
GT V L C +++ +W N Q +P L L + + + C
Sbjct: 14 GTSVELTCPLDSDE---NLKWEKNGQELPQK-HDKHLVLQDFSEVEDSGYYVCYTPASNK 69
Query: 375 --------DVGKSEDSETLDV-------------TYGPRFRARPYSVQVDRGAG-VNLLC 412
VG ++D++ V RG G V L C
Sbjct: 70 NTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTC 129
Query: 413 DVDGNPAPEITWIHEDS--DKVVGNSPNLTLLMTSDDLAGRYYCKAS 457
+ I W+ + S + L + D G Y C+ +
Sbjct: 130 GLTDKT---IKWLKDGSIISPLNATKNTWNLGNNAKDPRGTYQCQGA 173
Score = 30.6 bits (68), Expect = 1.7
Identities = 17/83 (20%), Positives = 26/83 (31%), Gaps = 17/83 (20%)
Query: 28 QKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEE 87
K Q + V L C + DKT ++W KD ++I
Sbjct: 108 NKAKNLVQVDGSRGDGSVLLTCGLTDKT--IKWLKDG---------------SIISPLNA 150
Query: 88 GDYSLEIYPVMLDDDARYQCQVS 110
+ + D YQCQ +
Sbjct: 151 TKNTWNLGNNAKDPRGTYQCQGA 173
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 47.9 bits (114), Expect = 4e-06
Identities = 23/165 (13%), Positives = 49/165 (29%), Gaps = 19/165 (11%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVP-------AAASATELYLTNITRHQHDSIVK 369
V++ C+A + N + E + ++ + +
Sbjct: 22 LDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDAN-KAGRYQ 80
Query: 370 CEVHNDVGKSEDSETLDVT-----YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW 424
C+ + S+TL++ P A V + G ++L C P +
Sbjct: 81 CQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLV-LMPGENISLTCSSAHIPFDRFSL 139
Query: 425 IHEDSDKVV-----GNSPNLTLLMTSDDLAGRYYCKASVMGFPEV 464
E + + N +L +++G Y C P +
Sbjct: 140 AKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYL 184
Score = 39.9 bits (93), Expect = 0.002
Identities = 23/116 (19%), Positives = 34/116 (29%), Gaps = 9/116 (7%)
Query: 42 GSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDD 101
V + C+ I + + Q +N + + + E D I + +
Sbjct: 23 DGSVKIQCQAIREAYLTQLMI-------IKNSTYREIGRRLKFWNETDPEFVIDHMDANK 75
Query: 102 DARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECIS 157
RYQCQ G S L V P + L I L C S
Sbjct: 76 AGRYQCQYRIG--HYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTCSS 129
Score = 35.2 bits (81), Expect = 0.058
Identities = 31/206 (15%), Positives = 63/206 (30%), Gaps = 32/206 (15%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDS---------DKVVGNSPNLTL 595
P A+ V + V + C I ++S P +
Sbjct: 10 PFISAKSSPV-IPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVI 68
Query: 596 LMTSDDLAGRYYCKASV-MGFPEVGAEATVYLKG---RPTIISHRTQFGIPGDTARVECS 651
+ AGRY C+ + + + G +P + + R +PG+ + CS
Sbjct: 69 DHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTCS 128
Query: 652 AFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCS-- 709
+ IP + + + GE + + + G+Y C
Sbjct: 129 SAHIPFD-RFSLAKEGELSLPQHQS----------GEHPANFSLGPVDLNVSGIYRCYGW 177
Query: 710 -VSNPYG----SDSVEIMLKPQKSFP 730
+PY S+++E+++
Sbjct: 178 YNRSPYLWSFPSNALELVVTDSIHQD 203
Score = 32.5 bits (74), Expect = 0.54
Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 2/89 (2%)
Query: 192 TTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAP-KVQVSVIGSNRLVE 250
V+ + + CQ + R L+L+V K +S L+
Sbjct: 60 NETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMP 119
Query: 251 GTDVRLYCKAEANPSHMKYRWYINDQPVP 279
G ++ L C + P + +
Sbjct: 120 GENISLTCSSAHIPFDR-FSLAKEGELSL 147
Score = 32.2 bits (73), Expect = 0.69
Identities = 22/127 (17%), Positives = 40/127 (31%), Gaps = 14/127 (11%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDS---------DKVVGNSPNLTL 441
P A+ V + V + C I ++S P +
Sbjct: 10 PFISAKSSPV-IPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVI 68
Query: 442 LMTSDDLAGRYYCKASV-MGFPEVGAEATVYLKG---RPTIISHRTQFGIPGDTARVECS 497
+ AGRY C+ + + + G +P + + R +PG+ + CS
Sbjct: 69 DHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTCS 128
Query: 498 AFSIPPP 504
+ IP
Sbjct: 129 SAHIPFD 135
Score = 29.1 bits (65), Expect = 6.3
Identities = 10/58 (17%), Positives = 18/58 (31%), Gaps = 4/58 (6%)
Query: 684 PLKEGIKSTLIIRESRHDHFGVYNCSVSNPYG----SDSVEIMLKPQKSFPLLLILTG 737
+I + G Y C + SD++E+++ P L G
Sbjct: 57 KFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRG 114
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 46.0 bits (109), Expect = 4e-06
Identities = 14/95 (14%), Positives = 30/95 (31%), Gaps = 16/95 (16%)
Query: 34 PQDQTAVVGSRVTLPCRV-------IDKTGVLQWTKDD--------FALGPHRNLSGF-D 77
P++ + GS + +PC + W D + P F
Sbjct: 7 PKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRG 66
Query: 78 RYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTG 112
R ++G+ + +L + + +D Y +
Sbjct: 67 RAELMGNMDHKVCNLLLKDLKPEDSGTYNFRFEIS 101
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A
Length = 117
Score = 44.7 bits (106), Expect = 1e-05
Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 11/106 (10%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTG--VLQWTKDDFALGPHRNL--------SGFD-RYAMI 82
P T G+ T C + + + +L W + + + D R+ +I
Sbjct: 6 PAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQII 65
Query: 83 GSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
D+ + I +D Y C + S A L V
Sbjct: 66 QLPNRHDFHMNILDTRRNDSGIYLCGAISLHPKLKIEESPGAELVV 111
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 47.4 bits (112), Expect = 1e-05
Identities = 43/270 (15%), Positives = 77/270 (28%), Gaps = 34/270 (12%)
Query: 34 PQDQTAVVGSRVTLPCRVID---KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDY 90
D + L C V T + W +D + +
Sbjct: 16 SCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMD-----VDLSTASTTQEG--ELA 68
Query: 91 S----LEIYPVMLDDDARYQCQVS------TGILGEPAIRSRFATLTVLVPPDPPRIVQG 140
S L + D Y CQV+ + A + L P P +
Sbjct: 69 STQSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIR 128
Query: 141 DTLYTTEDREIELECISANGKPP---AEITWIDGTGTVMSNVRVTEEASVDGRRTTVKST 197
+ T C+ + P ++TW +G +++ EE +G TV ST
Sbjct: 129 KSPTIT--------CLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGT-LTVTST 179
Query: 198 LVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNR-LVEGTDVRL 256
L + + T+ C+ + + +V + L
Sbjct: 180 LPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTL 239
Query: 257 YCKAEA-NPSHMKYRWYINDQPVPAAASAT 285
C + P + +W N+ +P A +T
Sbjct: 240 ACLIQNFMPEDISVQWLHNEVQLPDARHST 269
Score = 38.9 bits (90), Expect = 0.007
Identities = 35/201 (17%), Positives = 56/201 (27%), Gaps = 26/201 (12%)
Query: 28 QKFAMEPQDQTAVVGSRVTLPCRVID---KTGVLQ--WTKDDFALGPHRNLSGFDRYAMI 82
+ P + T+ C V+D G +Q W++ G N S
Sbjct: 114 SAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRAS---GKPVNHSTRKEEKQR 170
Query: 83 GSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRF------ATLTVLVPPDPPR 136
+L + + YQC+V+ L +RS A V P
Sbjct: 171 NGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPEW 230
Query: 137 IVQGDTLYTTEDREIELECISANGKPPAEI--TWIDGTGTVMSNVRVTEEASVDGRRT-T 193
D L C+ P +I W+ + T +
Sbjct: 231 PGSRDKRT--------LACL-IQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFF 281
Query: 194 VKSTLVLTPKKEHHNTTFTCQ 214
V S L +T + F C+
Sbjct: 282 VFSRLEVTRAEWEQKDEFICR 302
Score = 37.7 bits (87), Expect = 0.015
Identities = 27/164 (16%), Positives = 49/164 (29%), Gaps = 14/164 (8%)
Query: 125 TLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKP-PAEITWIDGTGTVMSNVRVTE 183
T+ +L T I+L C+ + P +ITW++ G VM T
Sbjct: 9 TVKILQSSCDGGGHFPPT--------IQLLCLVSGYTPGTIQITWLED-GQVMDVDLSTA 59
Query: 184 EASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYA-PKVQVSV 242
+ +G + +S L L+ K + T+TCQ + +S
Sbjct: 60 STTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSR 119
Query: 243 IGSNRLVEGTDVRLYCKAEANPS---HMKYRWYINDQPVPAAAS 283
L + C ++ W ++
Sbjct: 120 PSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHST 163
Score = 28.9 bits (64), Expect = 9.2
Identities = 31/200 (15%), Positives = 55/200 (27%), Gaps = 24/200 (12%)
Query: 551 PYSVQVDRGAGVNLLCDVDG-NPAP-EITWIHEDSDKVVGNSPN--------------LT 594
+ LLC V G P +ITW+ + V S LT
Sbjct: 16 SCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELT 75
Query: 595 LLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISH----RTQFGIPGDTARVEC 650
L Y C+ + G + + ++ + + C
Sbjct: 76 LSQKHWLSDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITC 135
Query: 651 SAFSIPPPE---KVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYN 707
+ P + ++TW R V S + + STL + Y
Sbjct: 136 LVVDLAPSKGTVQLTW-SRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQ 194
Query: 708 CSVSNPYGSDSVEIMLKPQK 727
C V++P+ ++
Sbjct: 195 CRVTHPHLPRALMRSTTKTS 214
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 43.8 bits (103), Expect = 2e-05
Identities = 22/124 (17%), Positives = 39/124 (31%), Gaps = 33/124 (26%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTGVLQ-----WTKDDFALGPHRNLSGF------------ 76
+ +G V LPC ++ L W + D A H+N++ F
Sbjct: 9 LPEVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPD-APANHQNVAAFHPKMGPSFPSPK 67
Query: 77 ------------DRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFA 124
E D +L ++ + ++D+ Y C+ +T G
Sbjct: 68 PGSERLSFVSAKQSTGQDTEAELQDATLALHGLTVEDEGNYTCEFATFPKG---SVRGMT 124
Query: 125 TLTV 128
L V
Sbjct: 125 WLRV 128
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 44.8 bits (106), Expect = 3e-05
Identities = 25/157 (15%), Positives = 43/157 (27%), Gaps = 20/157 (12%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVP-------AAASATELYLTNITRHQHDSIVK 369
+ V + C + N ++Y+ + + + Y+ ++
Sbjct: 17 KEKQVTICC--QGNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSR-MAGQYS 73
Query: 370 CEVHNDVGKSEDSETLDVTYGPRFRARPYSVQ----VDRGAGVNLLCDVDGNPAPEITWI 425
C SE S LD+ + SV V G V C +D + +
Sbjct: 74 CIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTATSM-FLLL 132
Query: 426 HEDSDKVVGNSP-----NLTLLMTSDDLAGRYYCKAS 457
E V L + G Y C S
Sbjct: 133 KEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGS 169
Score = 35.6 bits (82), Expect = 0.038
Identities = 13/113 (11%), Positives = 28/113 (24%), Gaps = 13/113 (11%)
Query: 629 RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688
+P I + + C + + P +
Sbjct: 4 KPFIWAEPHFMVPKEKQVTICCQG---NYGAVEYQLHFEGSLF------AVDRPKPPERI 54
Query: 689 IKSTLIIRESRHDHFGVYNCSVSNPYG----SDSVEIMLKPQKSFPLLLILTG 737
K I + G Y+C S+ +++++ P L + G
Sbjct: 55 NKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPG 107
Score = 35.2 bits (81), Expect = 0.054
Identities = 15/119 (12%), Positives = 26/119 (21%), Gaps = 11/119 (9%)
Query: 42 GSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDD 101
+VT+ C+ Q + R + I +
Sbjct: 18 EKQVTICCQGNYGAVEYQLHFEGSLFAVDRPKP---------PERINKVKFYIPDMNSRM 68
Query: 102 DARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANG 160
+Y C G + S L V D P + ++ C
Sbjct: 69 AGQYSCIYRVG--ELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTA 125
Score = 34.8 bits (80), Expect = 0.080
Identities = 36/198 (18%), Positives = 59/198 (29%), Gaps = 37/198 (18%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV--------GNSPNLTLL 596
P A P+ + V + V + C + A E E S V N +
Sbjct: 5 PFIWAEPHFM-VPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIP 62
Query: 597 MTSDDLAGRYYCKASVMGFPEVGAEA--TVYL-----KGRPTIISHRTQFGIPGDTARVE 649
+ +AG+Y C V E+ +E + L PT+ H I G+
Sbjct: 63 DMNSRMAGQYSCIYRV---GELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFY 119
Query: 650 CSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCS 709
C G V +++ + H G Y C
Sbjct: 120 CR--LDTATSMFLLLKEGRSSHVQRGY----------GKVQAEFPLGPVTTAHRGTYRCF 167
Query: 710 VS-NPYG----SDSVEIM 722
S N + S+ V+++
Sbjct: 168 GSYNNHAWSFPSEPVKLL 185
Score = 28.6 bits (64), Expect = 7.0
Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 10/76 (13%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV--------GNSPNLTLL 442
P A P+ + V + V + C + A E E S V N +
Sbjct: 5 PFIWAEPHFM-VPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIP 62
Query: 443 MTSDDLAGRYYCKASV 458
+ +AG+Y C V
Sbjct: 63 DMNSRMAGQYSCIYRV 78
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 44.9 bits (106), Expect = 5e-05
Identities = 30/215 (13%), Positives = 55/215 (25%), Gaps = 24/215 (11%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVP-------AAASATELYLTNITRHQHDSIVK 369
+ V + C + N ++Y+ + + + Y+ ++
Sbjct: 20 KEKQVTICC--QGNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSR-MAGQYS 76
Query: 370 CEVHNDVGKSEDSETLDVTYGPRFRARPYSVQ----VDRGAGVNLLCDVDGNPAPEITWI 425
C SE S LD+ + SV V G V C +D + +
Sbjct: 77 CIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTATSM-FLLL 135
Query: 426 HEDSDKVVGNSP-----NLTLLMTSDDLAGRYYCKAS----VMGFPEVGAEATVYLKGRP 476
E V L + G Y C S FP + V
Sbjct: 136 KEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGDIEN 195
Query: 477 TIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSY 511
T ++ + + + W +
Sbjct: 196 TSLAPEDPTFPADTWGTYLLTTETGLQKDHALWDH 230
Score = 39.9 bits (93), Expect = 0.003
Identities = 29/234 (12%), Positives = 49/234 (20%), Gaps = 30/234 (12%)
Query: 42 GSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDD 101
+VT+ C+ Q + R + I +
Sbjct: 21 EKQVTICCQGNYGAVEYQLHFEGSLFAVDRPKP---------PERINKVKFYIPDMNSRM 71
Query: 102 DARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGK 161
+Y C G + S L V D P + ++ C
Sbjct: 72 AGQYSCIYRVG--ELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTAT 129
Query: 162 PPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADR 221
+ +G + + +A L P H T+ C
Sbjct: 130 SMFLLLK-EGRSSHVQRGYGKVQA-----------EFPLGPVTTAHRGTYRCFGSY---N 174
Query: 222 TYKV----ARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRW 271
+ +KLLV + T E W
Sbjct: 175 NHAWSFPSEPVKLLVTGDIENTSLAPEDPTFPADTWGTYLLTTETGLQKDHALW 228
Score = 36.4 bits (84), Expect = 0.034
Identities = 32/200 (16%), Positives = 56/200 (28%), Gaps = 43/200 (21%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDV-----------DGNPAPEITWIHEDSDKVVGNSPNL 593
P A P+ + V + V + C +G+ + N
Sbjct: 8 PFIWAEPHFM-VPKEKQVTICCQGNYGAVEYQLHFEGSLFAVDRPKPPER----INKVKF 62
Query: 594 TLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLK-------GRPTIISHRTQFGIPGDTA 646
+ + +AG+Y C V E+ +E + L PT+ H I G+
Sbjct: 63 YIPDMNSRMAGQYSCIYRV---GELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKV 119
Query: 647 RVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706
C G V +++ + H G Y
Sbjct: 120 TFYCR--LDTATSMFLLLKEGRSSHVQRGY----------GKVQAEFPLGPVTTAHRGTY 167
Query: 707 NCSVS-NPYG----SDSVEI 721
C S N + S+ V++
Sbjct: 168 RCFGSYNNHAWSFPSEPVKL 187
Score = 32.6 bits (74), Expect = 0.52
Identities = 22/139 (15%), Positives = 37/139 (26%), Gaps = 17/139 (12%)
Query: 35 QDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEI 94
+ G +VT CR+ T + K+ + R + ++ +
Sbjct: 109 PGPEVISGEKVTFYCRLDTATSMFLLLKEGRSSHVQRGYGKV----------QAEFP--L 156
Query: 95 YPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRI-VQGDTLYTTEDREIEL 153
PV Y+C S S L V + + + T D
Sbjct: 157 GPVTTAHRGTYRCFGSYNNHAWSF-PSEPVKLLVTGDIENTSLAPEDPTF--PADTWGTY 213
Query: 154 ECISANGKPPAEITWIDGT 172
+ G W D T
Sbjct: 214 LLTTETGLQKDHALW-DHT 231
Score = 31.8 bits (72), Expect = 0.90
Identities = 15/113 (13%), Positives = 29/113 (25%), Gaps = 13/113 (11%)
Query: 629 RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688
+P I + + C + GS P +
Sbjct: 7 KPFIWAEPHFMVPKEKQVTICCQG---NYGAVEYQLHF-----EGSLF-AVDRPKPPERI 57
Query: 689 IKSTLIIRESRHDHFGVYNCSVSNPYG----SDSVEIMLKPQKSFPLLLILTG 737
K I + G Y+C S+ +++++ P L + G
Sbjct: 58 NKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPG 110
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A
{Mus musculus}
Length = 270
Score = 44.6 bits (105), Expect = 7e-05
Identities = 42/250 (16%), Positives = 76/250 (30%), Gaps = 37/250 (14%)
Query: 10 ALWVLLA-LSMGSLAQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALG 68
S G Q P+ G + + C V+ W + +
Sbjct: 13 KQATKGGGGSGGGGGMKVIQ----TPRYLVKGQGQKAKMRCIPEKGHPVVFWYQQNKNNE 68
Query: 69 P-----HRNLSGFDRYAMI-----GSDEEG-DYSLEIYPVMLDDDARYQCQVSTGILGEP 117
+N + M SLEI D A Y C S +
Sbjct: 69 FKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDT 128
Query: 118 AIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELE--------CISANGKPP-AEITW 168
F T L+ + + V + E E E+ C++ P E++W
Sbjct: 129 Q---YFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW 185
Query: 169 -IDG----TGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKK-EHHNTTFTCQAQ---NTA 219
++G +G + E+ +++ R + S L ++ ++ F CQ Q +
Sbjct: 186 WVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSE 245
Query: 220 DRTYKVARLK 229
+ + R K
Sbjct: 246 NDEWTQDRAK 255
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 44.1 bits (103), Expect = 8e-05
Identities = 34/185 (18%), Positives = 55/185 (29%), Gaps = 21/185 (11%)
Query: 400 VQVDRGAGVNLLCDVDG-NPAPEITWIHEDSD----KVVGNSPNLTLLMTSDDLAGRYYC 454
V V GA L C + + + W D+ + LT+ S AG C
Sbjct: 17 VAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVC 76
Query: 455 KASVMGFP-EVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSY-- 511
S G + + VY +S +PGD V C+A + P + S+
Sbjct: 77 VGSCGGRTFQHTVQLLVYAFPNQLTVSPAAL--VPGD-PEVACTAHKVTPVDPNALSFSL 133
Query: 512 -RGEEIGVGS---SDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCD 567
G + G+ + + + ++ VT R L C
Sbjct: 134 LVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLG------TPVPPALYCQ 187
Query: 568 VDGNP 572
Sbjct: 188 ATMRL 192
Score = 38.0 bits (87), Expect = 0.008
Identities = 14/83 (16%), Positives = 22/83 (26%), Gaps = 11/83 (13%)
Query: 642 PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHD 701
G + ++ C V W +G SD S L +R +
Sbjct: 21 LGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGR-----------SVLTVRNASLS 69
Query: 702 HFGVYNCSVSNPYGSDSVEIMLK 724
G C S + + L
Sbjct: 70 AAGTRVCVGSCGGRTFQHTVQLL 92
Score = 37.2 bits (85), Expect = 0.016
Identities = 37/214 (17%), Positives = 61/214 (28%), Gaps = 29/214 (13%)
Query: 126 LTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEA 185
L V P + G + +L C A A + W G T + V+
Sbjct: 8 LQVEPPEPVVAVALGASR--------QLTCRLACADRGASVQW-RGLDTSLGAVQSD--- 55
Query: 186 SVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGS 245
T +S L + T C +L + YA Q++V S
Sbjct: 56 -------TGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV---YAFPNQLTV--S 103
Query: 246 NRLVEGTDVRLYCKAE----ANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIV 301
+ D + C A +P+ + + + Q + A + Q D V
Sbjct: 104 PAALVPGDPEVACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDV 163
Query: 302 KCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMK 335
V LYC+A ++
Sbjct: 164 LFRVTERWRLPPL-GTPVPPALYCQATMRLPGLE 196
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 43.7 bits (103), Expect = 9e-05
Identities = 29/171 (16%), Positives = 54/171 (31%), Gaps = 29/171 (16%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVP-------AAASATELYLTNITRHQHDSIVK 369
G V ++C + +YR + P P + + ++T + +
Sbjct: 18 WGNSVTIWC--QGTLEAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTE-DYAGRYR 74
Query: 370 CEVHNDVGKSEDSETLDVT-----YGPRFRARPYSVQVDRGAGVNLLCDV---------- 414
C + VG S+ S+ L++ P A P + V G V LLC
Sbjct: 75 CYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPL-VTSGKSVTLLCQSRSPMDTFLLC 133
Query: 415 -DGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEV 464
+ P + E + + + + G Y C +S +
Sbjct: 134 KERAAHPLLCLRSEHGAQ--QHQAEFPMSPVTSVHGGTYRCFSSHGFSHYL 182
Score = 35.6 bits (82), Expect = 0.040
Identities = 35/199 (17%), Positives = 59/199 (29%), Gaps = 34/199 (17%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV--------GNSPNLTLL 596
P A P SV + G V + C A E E+S N ++
Sbjct: 6 PTLWAEPGSV-ISWGNSVTIWCQGT-LEAREYRLDKEESPAPWDRQNPLEPKNKARFSIP 63
Query: 597 MTSDDLAGRYYCKASVMGFPEVGAE-------ATVYLKGRPTIISHRTQFGIPGDTARVE 649
++D AGRY C P ++ +PT+ + + G + +
Sbjct: 64 SMTEDYAGRYRCYYRS---PVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLL 120
Query: 650 CSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCS 709
C S P + + + ++ + H G Y C
Sbjct: 121 CQ--SRSPMDTFLLCKERAAHPLLCLRSEHG-----AQQHQAEFPMSPVTSVHGGTYRCF 173
Query: 710 VS---NPYG----SDSVEI 721
S + Y SD +E+
Sbjct: 174 SSHGFSHYLLSHPSDPLEL 192
Score = 34.4 bits (79), Expect = 0.11
Identities = 18/116 (15%), Positives = 36/116 (31%), Gaps = 11/116 (9%)
Query: 42 GSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDD 101
G+ VT+ C+ + + K++ R + + I + D
Sbjct: 19 GNSVTIWCQGTLEAREYRLDKEESPAPWDRQNP---------LEPKNKARFSIPSMTEDY 69
Query: 102 DARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECIS 157
RY+C + + S L + P + + T + + L C S
Sbjct: 70 AGRYRCYYRSP--VGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLLCQS 123
Score = 32.5 bits (74), Expect = 0.41
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 678 YSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYG----SDSVEIMLKPQKSFPLLL 733
++PL+ K+ I D+ G Y C +P G SD +E+++ S P L
Sbjct: 45 PWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLS 104
Query: 734 ILTG 737
L
Sbjct: 105 ALPS 108
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor,
immune system/receptor/complex, TCR, MHC,
immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E
2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D*
3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E
3kxf_E 2cde_B ...
Length = 252
Score = 44.2 bits (104), Expect = 1e-04
Identities = 33/207 (15%), Positives = 67/207 (32%), Gaps = 27/207 (13%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTGVLQWTKDD----------FALGPHRNLSGF-DRYAMI 82
P+ G VTL C + W + D + + Y++
Sbjct: 10 PKYLFRKEGQNVTLSCEQNLNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVS 69
Query: 83 GSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDT 142
+E + L + + A Y C S+ T +
Sbjct: 70 REKKE-SFPLTVTSAQKNPTAFYLCASSSR--SSYEQYFGPGTRLTVTEDLKNVFPPEVA 126
Query: 143 LYTTEDREIE------LECISANGKP-PAEITW-IDG----TGTVMSNVRVTEEASVDGR 190
++ + EI L C++ P E++W ++G +G + E+ +++
Sbjct: 127 VFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDS 186
Query: 191 RTTVKSTLVLTPKK-EHHNTTFTCQAQ 216
R ++ S L ++ ++ F CQ Q
Sbjct: 187 RYSLSSRLRVSATFWQNPRNHFRCQVQ 213
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 42.9 bits (101), Expect = 1e-04
Identities = 30/171 (17%), Positives = 47/171 (27%), Gaps = 28/171 (16%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVP-------AAASATELYLTNITRHQHDSIVK 369
G V + C + +YR P P + + ++T H H +
Sbjct: 18 RGNSVTIRC--QGTLEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEH-HAGRYR 74
Query: 370 CEVHNDVGKSEDSETLDVTYG-----PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW 424
C ++ G SE S+ L++ P A P V V G V L C
Sbjct: 75 CYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPV-VTSGENVTLQCGSRLRFDR-FIL 132
Query: 425 IHEDSDKVV-----------GNSPNLTLLMTSDDLAGRYYCKASVMGFPEV 464
E K+ + + C S +V
Sbjct: 133 TEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHILQV 183
Score = 35.6 bits (82), Expect = 0.040
Identities = 21/113 (18%), Positives = 40/113 (35%), Gaps = 13/113 (11%)
Query: 629 RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688
+ T+ + G++ + C + + GS + ++PL+
Sbjct: 5 KATLWAEPGSVISRGNSVTIRCQG---TLEAQEYRLVK-----EGSPE-PWDTQNPLEPK 55
Query: 689 IKSTLIIRESRHDHFGVYNCSVSNPYG----SDSVEIMLKPQKSFPLLLILTG 737
K+ I H G Y C +P G SD +E+++ + P L L
Sbjct: 56 NKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPS 108
Score = 35.2 bits (81), Expect = 0.055
Identities = 17/116 (14%), Positives = 34/116 (29%), Gaps = 11/116 (9%)
Query: 42 GSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDD 101
G+ VT+ C+ + + K+ + + I +
Sbjct: 19 GNSVTIRCQGTLEAQEYRLVKEGSPEPWDTQNP---------LEPKNKARFSIPSMTEHH 69
Query: 102 DARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECIS 157
RY+C + + S L V + P + + T + L+C S
Sbjct: 70 AGRYRCYYYSP--AGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGS 123
Score = 31.8 bits (72), Expect = 0.71
Identities = 34/200 (17%), Positives = 62/200 (31%), Gaps = 33/200 (16%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV--------GNSPNLTLL 596
A P SV + RG V + C A E + E S + N ++
Sbjct: 6 ATLWAEPGSV-ISRGNSVTIRCQGT-LEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIP 63
Query: 597 MTSDDLAGRYYCKASVMGFPEVGAE-------ATVYLKGRPTIISHRTQFGIPGDTARVE 649
++ AGRY C P +E +PT+ + + G+ ++
Sbjct: 64 SMTEHHAGRYRCYYYS---PAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQ 120
Query: 650 CSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCS 709
C S ++ + G+ + D + ++ + H + C
Sbjct: 121 CG--SRLRFDRFILTEEGDHKLSWTLD----SQLTPSGQFQALFPVGPVTPSHRWMLRCY 174
Query: 710 VSNPYG-------SDSVEIM 722
S + SD +EI
Sbjct: 175 GSRRHILQVWSEPSDLLEIP 194
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex,
immunoglobulin fold, immune receptor, membr immune
system; HET: NAG; 2.55A {Homo sapiens}
Length = 268
Score = 43.9 bits (103), Expect = 2e-04
Identities = 46/254 (18%), Positives = 84/254 (33%), Gaps = 36/254 (14%)
Query: 4 MTRVQSALWVLLALSMGSLAQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKD 63
+ ++ + G Q P ++ G V L C I L W +
Sbjct: 7 VHFFKNIVTPRGGSGGGGGGAGVSQ----TPSNKVTEKGKYVELRCDPISGHTALYWYRQ 62
Query: 64 DFALGP----------HRNLSGF--DRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVST 111
GP + SG DR+ E +L+I D A Y C S
Sbjct: 63 SLGQGPEFLIYFQGTGAADDSGLPNDRFF-AVRPEGSVSTLKIQRTERGDSAVYLCATSA 121
Query: 112 GILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIE------LECISANGKPP-A 164
+ T+ + P V ++ + EI L C++ P
Sbjct: 122 LGDTQYFGPGTRLTVLEDLKNVFPPEV---AVFEPSEAEISHTQKATLVCLATGFYPDHV 178
Query: 165 EITW-IDG----TGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKK-EHHNTTFTCQAQN- 217
E++W ++G +G + E+ +++ R ++ S L ++ ++ F CQ Q
Sbjct: 179 ELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFY 238
Query: 218 --TADRTYKVARLK 229
+ + + R K
Sbjct: 239 GLSENDEWTQDRAK 252
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B
4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B
3qjh_B 3qiw_D* 3qiu_D
Length = 245
Score = 43.1 bits (101), Expect = 2e-04
Identities = 39/206 (18%), Positives = 71/206 (34%), Gaps = 23/206 (11%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGP-----HRNLSGFDRYAMI-----G 83
P Q +G VTL C + W K N ++ +
Sbjct: 9 PSHQIIDMGQMVTLNCDPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSV 68
Query: 84 SDEEG-DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPR-----I 137
+G ++L+I P L+D A Y C S LTVL +
Sbjct: 69 ERPDGSYFTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAV 128
Query: 138 VQGDTLYTTEDREIELECISANGKP-PAEITW-IDG----TGTVMSNVRVTEEASVDGRR 191
+ + ++ L C++ P E++W ++G +G + E+ +++ R
Sbjct: 129 FEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSR 188
Query: 192 TTVKSTLVLTPKK-EHHNTTFTCQAQ 216
+ S L ++ ++ F CQ Q
Sbjct: 189 YALSSRLRVSATFWQNPRNHFRCQVQ 214
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 3e-04
Identities = 54/366 (14%), Positives = 104/366 (28%), Gaps = 121/366 (33%)
Query: 658 PEKVTWSYR--------GEEIG---VGSS--DDYSVLEDPLKEGIKSTLIIRE---SRHD 701
+ V+ + R EE+ V +Y L P+K + ++ + D
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 702 HFGVYNCSVSNPYGSDSVEIM------------LKPQKSFPLLLILTGVIGC---VVILV 746
+YN + + +V + L+P K +++ GV+G V L
Sbjct: 118 R--LYN--DNQVFAKYNVSRLQPYLKLRQALLELRPAK----NVLIDGVLGSGKTWVALD 169
Query: 747 ALTMVVILCQ----------RKVKKPP----PGNGIEHHVTADGEKNQCKESDNSSNIS- 791
+ C+ + P + + + + N SD+SSNI
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI----DPNWTSRSDHSSNIKL 225
Query: 792 ---DIKLEFRTGSS-------------VSNV-HLDYAGHDSETGSESVHTRIGVPLAGPV 834
I+ E R V N + + + TR
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI---LLTTR--------- 273
Query: 835 PMDQRYHRYSSADFADAVFPSLKPDGHNNNGF-------VFSDFIRDYNQTLPKLAPSPH 887
+ DF A + H++ + ++ Q LP+ + +
Sbjct: 274 --FK-----QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 888 LPPSLSNSVIVTDKTPPPSHL------------TISSNSVDPRYSATYGNPY-----LRQ 930
P S+I + TI +S++ A Y +
Sbjct: 327 -P--RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383
Query: 931 SPNLPP 936
S ++P
Sbjct: 384 SAHIPT 389
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 41.1 bits (96), Expect = 3e-04
Identities = 15/121 (12%), Positives = 34/121 (28%), Gaps = 20/121 (16%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTGVLQ--------WTKDDFALGPHRNLSGFD-------- 77
T G V + C W + + ++ +
Sbjct: 13 QSSVTVQEGMCVHVRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEE 72
Query: 78 ---RYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDP 134
R+ ++G + + +L I + D RY ++ G + + ++ V
Sbjct: 73 TRDRFHLLGDPQTKNCTLSIRDARMSDAGRYFFRMEKGNIKWNYKYDQL-SVNVTALTHR 131
Query: 135 P 135
P
Sbjct: 132 P 132
>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin; immune
system/receptor, immune system/receptor/complex, TCR,
MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A 2vlm_D 2vlk_D
2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D 3qeq_D
Length = 215
Score = 42.3 bits (99), Expect = 3e-04
Identities = 33/193 (17%), Positives = 62/193 (32%), Gaps = 24/193 (12%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGF--------DRYAMIGSD 85
PQ + G +T+ C LQW + + GP ++ R D
Sbjct: 8 PQFLSIQEGENLTVYCNSSSVFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGD 67
Query: 86 EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVL--VPPDPPRIVQGDTL 143
D SL I D Y C + I + L+V + P + Q L
Sbjct: 68 ARKDSSLHITAAQPGDTGLYLCAGAGSQ--GNLIFGKGTKLSVKPNIQNPDPAVYQ---L 122
Query: 144 YTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPK 203
++ + + C+ + ++ + +++ V + S+D + ++ V
Sbjct: 123 RDSKSSDKSV-CLFTDFDSQTNVSQSKDSDVYITDKTVLDMRSMDFKS----NSAVAWSN 177
Query: 204 KEHHNTTFTCQAQ 216
K F C
Sbjct: 178 KSD----FACANA 186
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 42.8 bits (99), Expect = 4e-04
Identities = 30/207 (14%), Positives = 57/207 (27%), Gaps = 29/207 (14%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGD 89
+ +E G V L C ++ G+ WT D G
Sbjct: 9 YVVELDWYPDAPGEMVVLTCDTPEEDGI-TWTLD-----------QSSEVLGSGK----- 51
Query: 90 YSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDR 149
+L I D +Y C +L + L + D
Sbjct: 52 -TLTIQVKEFGDAGQYTCHKGGEVLS-------HSLLLLHKKEDGIWSTDILKDQKEPKN 103
Query: 150 EIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTT----VKSTLVLTPKKE 205
+ L C + N W+ T ++ + S D + T S + +
Sbjct: 104 KTFLRCEAKNYSGRFTCWWLTTISTDLTFSVKSSRGSSDPQGVTCGAATLSAERVRGDNK 163
Query: 206 HHNTTFTCQAQNTADRTYKVARLKLLV 232
+ + CQ + + ++++V
Sbjct: 164 EYEYSVECQEDSACPAAEESLPIEVMV 190
Score = 42.0 bits (97), Expect = 6e-04
Identities = 25/113 (22%), Positives = 39/113 (34%), Gaps = 9/113 (7%)
Query: 405 GAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEV 464
G V L CD ITW + S +V+G+ LT+ + AG+Y C EV
Sbjct: 21 GEMVVLTCD--TPEEDGITWTLDQSSEVLGSGKTLTIQVKEFGDAGQYTCHKG----GEV 74
Query: 465 GAEATVYLKGRPTII---SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGE 514
+ + + L + I P + + C A + W
Sbjct: 75 LSHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNYSGRFTCWWLTTIS 127
Score = 42.0 bits (97), Expect = 6e-04
Identities = 25/113 (22%), Positives = 39/113 (34%), Gaps = 9/113 (7%)
Query: 559 GAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEV 618
G V L CD ITW + S +V+G+ LT+ + AG+Y C EV
Sbjct: 21 GEMVVLTCD--TPEEDGITWTLDQSSEVLGSGKTLTIQVKEFGDAGQYTCHKG----GEV 74
Query: 619 GAEATVYLKGRPTII---SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGE 668
+ + + L + I P + + C A + W
Sbjct: 75 LSHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNYSGRFTCWWLTTIS 127
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 39.3 bits (92), Expect = 8e-04
Identities = 17/111 (15%), Positives = 38/111 (34%), Gaps = 16/111 (14%)
Query: 34 PQDQTAVVGSRVTLPCRV--IDKTGVLQWTKDDFALGPH--------RNLSGFDRYAMIG 83
P++ + +T+ CR K W + L +R ++
Sbjct: 8 PEEVSGQEQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRD 67
Query: 84 SDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDP 134
+ + +++ + + + D Y C ++ G L +TV + P P
Sbjct: 68 NQRDFIFTVTMEDLRMSDAGIYWCGITKGGLD------PMFKVTVNIGPVP 112
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 39.4 bits (91), Expect = 8e-04
Identities = 17/108 (15%), Positives = 35/108 (32%), Gaps = 11/108 (10%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRV----IDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSD 85
F +P + G + +V + ++W K + ++ + +
Sbjct: 15 FLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKS-GARFSFKESHNS 73
Query: 86 EEGDYS--LEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVP 131
Y+ L I V+L D Y+ +V + S + V P
Sbjct: 74 ASNVYTVELHIGKVVLGDRGYYRLEVKA----KDTCDSCGFNIDVEAP 117
Score = 35.6 bits (81), Expect = 0.016
Identities = 16/88 (18%), Positives = 27/88 (30%), Gaps = 7/88 (7%)
Query: 643 GDTARVECSAFSIPPPEK--VTWSYRGEEIGVGSSDD----YSVLEDPLKEGIKSTLIIR 696
G A V P+K + W ++G+ + +GS + + L I
Sbjct: 27 GKDAVVVAKVNGKELPDKPTIKW-FKGKWLELGSKSGARFSFKESHNSASNVYTVELHIG 85
Query: 697 ESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
+ G Y V DS +
Sbjct: 86 KVVLGDRGYYRLEVKAKDTCDSCGFNID 113
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 41.1 bits (96), Expect = 9e-04
Identities = 41/213 (19%), Positives = 60/213 (28%), Gaps = 35/213 (16%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDK----------VVGNSPNLT 594
P A P + V V L C D E K + N +
Sbjct: 8 PSLLAHPGPL-VKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFS 65
Query: 595 LLMTSDDLAGRYYCKASVMGFPEVGAEAT-------VYLKGRPTIISHRTQFGIPGDTAR 647
+ DLAG Y C SV P + + L +P++ + + G++
Sbjct: 66 IGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGESVT 125
Query: 648 VECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYN 707
+ CS S + S GE S V H G Y
Sbjct: 126 LSCS--SRSSYDMYHLSREGEAHERRFSAGPKV-------NGTFQADFPLGPATHGGTYR 176
Query: 708 CSVS---NPYG----SDSVEIMLKPQKSFPLLL 733
C S +PY SD + + + S
Sbjct: 177 CFGSFRDSPYEWSNSSDPLLVSVTGNPSNSWPS 209
Score = 37.7 bits (87), Expect = 0.011
Identities = 35/235 (14%), Positives = 62/235 (26%), Gaps = 46/235 (19%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDK----------VVGNSPNLT 440
P A P + V V L C D E K + N +
Sbjct: 8 PSLLAHPGPL-VKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFS 65
Query: 441 LLMTSDDLAGRYYCKASVMGFPEVGAEAT-------VYLKGRPTIISHRTQFGIPGDTAR 493
+ DLAG Y C SV P + + L +P++ + + G++
Sbjct: 66 IGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGESVT 125
Query: 494 VECSA-------------FSIPPPEKVTWSYRGE---EIGVGSSDD--------YSVHND 529
+ CS+ + G + +G + +
Sbjct: 126 LSCSSRSSYDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPATHGGTYRCFGSFRDSP 185
Query: 530 VGKSEDSE--TLDVTYGPRFRARPYSV-QVDRGAGVNLLCDVDGNPAPEITWIHE 581
S S+ + VT P + + G +L + E +
Sbjct: 186 YEWSNSSDPLLVSVTGNPSNSWPSPTEPSSETGNPRHLHAAAEQKLISEEDLNLD 240
Score = 35.3 bits (81), Expect = 0.062
Identities = 31/246 (12%), Positives = 59/246 (23%), Gaps = 23/246 (9%)
Query: 42 GSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDD 101
V L C + ++ G ++ G + + I P+M D
Sbjct: 21 EETVILQCWSDVRFQHFLLHRE----GKFKDTLHLIGEHHDGVSKA---NFSIGPMMQDL 73
Query: 102 DARYQCQVSTG-ILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANG 160
Y+C S + + S + + + P + + L C S
Sbjct: 74 AGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGESVTLSCSS--- 130
Query: 161 KPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTAD 220
+ ++ + G ++ T ++ L P H T+ C
Sbjct: 131 RSSYDMYHLSREGEAHERRF----SAGPKVNGTFQADFPLGP--ATHGGTYRCFGSFRDS 184
Query: 221 RTYKVAR---LKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEAN---PSHMKYRWYIN 274
L + V P G L+ AE +
Sbjct: 185 PYEWSNSSDPLLVSVTGNPSNSWPSPTEPSSETGNPRHLHAAAEQKLISEEDLNLDLVPR 244
Query: 275 DQPVPA 280
Sbjct: 245 GSSSHH 250
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 39.5 bits (91), Expect = 0.001
Identities = 18/100 (18%), Positives = 25/100 (25%), Gaps = 25/100 (25%)
Query: 38 TAVVGSRVTLPCRVI----DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGS--------- 84
G V LPC + V+ W K + G + G
Sbjct: 15 EVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYK 74
Query: 85 ------------DEEGDYSLEIYPVMLDDDARYQCQVSTG 112
+L + V D RY CQV+
Sbjct: 75 ESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQW 114
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 39.2 bits (91), Expect = 0.001
Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 11/90 (12%)
Query: 34 PQDQTAVVGSRVTLPC-----RVIDKTGVLQWTKDDFALGP---HRNLSGFDRYAMIGSD 85
P + + GS LPC + G + W +D+ G + R A + S
Sbjct: 14 PPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASS 73
Query: 86 E---EGDYSLEIYPVMLDDDARYQCQVSTG 112
+ L I V D + Y C+V
Sbjct: 74 RFLHDHQAELHIRDVRGHDASIYVCRVEVL 103
>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand
complex, immunoglobulin-like sandwich, T cell, B cell,
programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1
Length = 134
Score = 39.0 bits (91), Expect = 0.001
Identities = 19/114 (16%), Positives = 34/114 (29%), Gaps = 12/114 (10%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTG--VLQWTKDDFALGPHRNL--------SGFD-RYAMI 82
P T G+ T C + + + +L W + + + D R+ +I
Sbjct: 16 PAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQII 75
Query: 83 GSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVL-VPPDPP 135
D+ + I +D Y C + S A L V +
Sbjct: 76 QLPNRHDFHMNILDTRRNDSGIYLCGAISLHPKAKIEESPGAELVVTERILETS 129
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 40.6 bits (95), Expect = 0.001
Identities = 33/212 (15%), Positives = 59/212 (27%), Gaps = 34/212 (16%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTG------------VLQWTKDDFALGPHRNLSGFDRYAM 81
P+ + G V L C + + LQW + G S +
Sbjct: 8 PRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYL 67
Query: 82 IGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGE--PAIRSRFATLTVLVPPDPPRIVQ 139
D L + + C S + LTVL + + V
Sbjct: 68 ATRVT--DTELRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVL---EDLKNVF 122
Query: 140 GDTLY--------TTEDREIELECISANGKP-PAEITWIDGTGTVMSNVRVTEEASVDGR 190
+ + ++ L C++ P E++W V S V + +
Sbjct: 123 PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQP 182
Query: 191 RT-----TVKSTLVLTPKK-EHHNTTFTCQAQ 216
+ S L ++ ++ F CQ Q
Sbjct: 183 ALNDSRYALSSRLRVSATFWQNPRNHFRCQVQ 214
Score = 33.3 bits (76), Expect = 0.33
Identities = 27/160 (16%), Positives = 49/160 (30%), Gaps = 20/160 (12%)
Query: 588 GNSPNLTLLMTSDDLAGRYYCKASVMGFPEV-------GAEATVYLKGRPTIISHRTQFG 640
L L + + YC +S + G++ TV + F
Sbjct: 71 VTDTELRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFE 130
Query: 641 ------IPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG----- 688
A + C A P +++W G+E+ G S D L++
Sbjct: 131 PSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYA 190
Query: 689 IKSTLIIRESR-HDHFGVYNCSVSNPYGSDSVEIMLKPQK 727
+ S L + + + + C V S++ E K
Sbjct: 191 LSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWTQDRAK 230
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 38.4 bits (89), Expect = 0.001
Identities = 15/111 (13%), Positives = 27/111 (24%), Gaps = 14/111 (12%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGP----HRNLSGFDRYAMIGS 84
+ +D G + W + L + G RY +
Sbjct: 10 RLVAGLEDVQVYDGEDAVFSLDLSTIIQG-TWFLNGEELKSNEPEGQVEPGALRYRI--E 66
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPP 135
+ + L ++ V D G+ A LT+ P
Sbjct: 67 QKGLQHRLILHAVKHQDSGALVGFSCPGVQDS-------AALTIQESSGPS 110
Score = 31.1 bits (70), Expect = 0.50
Identities = 13/95 (13%), Positives = 28/95 (29%), Gaps = 8/95 (8%)
Query: 623 TVYLKGRPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVL 681
+ G +++ G+ A + + TW GEE+ +
Sbjct: 2 SSGSSGTARLVAGLEDVQVYDGEDAVFSLD---LSTIIQGTWFLNGEELKSNEPEGQVEP 58
Query: 682 EDPL----KEGIKSTLIIRESRHDHFGVYNCSVSN 712
++G++ LI+ +H G
Sbjct: 59 GALRYRIEQKGLQHRLILHAVKHQDSGALVGFSCP 93
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN;
1.75A {Gallus gallus}
Length = 231
Score = 39.6 bits (92), Expect = 0.002
Identities = 24/161 (14%), Positives = 48/161 (29%), Gaps = 13/161 (8%)
Query: 129 LVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAE--ITWIDGTGTVMSNVRVTEEAS 186
+PP P + +L C+ N + +TW + + +
Sbjct: 17 AIPPSPGELYISLD--------AKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEH 68
Query: 187 VDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIG-S 245
+G + S + ++ + FTC Q+ + +
Sbjct: 69 FNGT-YSASSAVPVSTQDWLSGERFTCTVQHEELPLPLSKSVYRNTGPTTPPLIYPFAPH 127
Query: 246 NRLVEGTDVRLYCKAEA-NPSHMKYRWYINDQPVPAAASAT 285
+ + V L C P ++ RW + + VPA T
Sbjct: 128 PEELSLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVT 168
Score = 32.3 bits (73), Expect = 0.63
Identities = 37/213 (17%), Positives = 60/213 (28%), Gaps = 44/213 (20%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRVID----KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSD 85
+A+ P + L C V++ + + WT++ ++
Sbjct: 16 YAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTRE----KSGNLR---PDPMVLQEH 68
Query: 86 EEGDYS----LEIYPVMLDDDARYQCQVSTGILGEPAIRS--------RFATLTVLVPPD 133
G YS + + R+ C V L P +S + P
Sbjct: 69 FNGTYSASSAVPVSTQDWLSGERFTCTVQHEELPLPLSKSVYRNTGPTTPPLIYPFAPHP 128
Query: 134 PPRIVQGDTLYTTEDREIELECISANGKPPA-EITW-IDG---------TGTVMSNVRVT 182
+ L C+ +P EI W D T V+ R
Sbjct: 129 E----------ELSLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVTTAVLPEERTA 178
Query: 183 EEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQA 215
A DG V S + + K + T F C A
Sbjct: 179 NGAGGDGDTFFVYSKMSVETAKWNGGTVFACMA 211
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 37.5 bits (86), Expect = 0.003
Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 14/94 (14%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH--------EDSDKVVGNSPNLTLL 442
PY V + G V L C P EI W H ED + + +L+L
Sbjct: 8 GGITQTPYKVSI-SGTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLK 64
Query: 443 MTSD-DLAGRYYCKASVMGFPEVGAEATVYLKGR 475
S+ + +G Y C G A +YL+ R
Sbjct: 65 EFSELEQSGYYVCYPR--GSKPEDANFYLYLRAR 96
Score = 37.5 bits (86), Expect = 0.003
Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 14/94 (14%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH--------EDSDKVVGNSPNLTLL 596
PY V + G V L C P EI W H ED + + +L+L
Sbjct: 8 GGITQTPYKVSI-SGTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLK 64
Query: 597 MTSD-DLAGRYYCKASVMGFPEVGAEATVYLKGR 629
S+ + +G Y C G A +YL+ R
Sbjct: 65 EFSELEQSGYYVCYPR--GSKPEDANFYLYLRAR 96
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 37.6 bits (87), Expect = 0.004
Identities = 15/112 (13%), Positives = 33/112 (29%), Gaps = 16/112 (14%)
Query: 34 PQDQTAVVGSRVTLPCR--VIDKTGVLQWTKDDFALGPH--------RNLSGFDRYAMIG 83
P + +T+ C +T + W + DR ++
Sbjct: 9 PTTVNGLERGSLTVQCVYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKD 68
Query: 84 SDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPP 135
+ + +++ + +M D Y C + T+ V + P P
Sbjct: 69 NQKNRTFTVTMEDLMKTDADTYWCGIEKT------GNDLGVTVQVTIDPAPV 114
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus
musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A
1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B
2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B*
2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Length = 238
Score = 39.2 bits (91), Expect = 0.004
Identities = 40/206 (19%), Positives = 66/206 (32%), Gaps = 27/206 (13%)
Query: 34 PQDQTAVVGSRVTLPCRVID----------KTG-VLQWTKDDFALGPHRNLSGFDRYAMI 82
P+++ AV G +VTL C+ + TG L+ + G D Y
Sbjct: 6 PRNKVAVTGGKVTLSCQQTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYK-- 63
Query: 83 GSDEEG-DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGD 141
S +SL + + Y C G F T L + R V
Sbjct: 64 ASRPSQEQFSLILELATPSQTSVYFCASGGGRGSYAEQ--FFGPGTRLTVLEDLRQVTPP 121
Query: 142 TLY--------TTEDREIELECISANGKP-PAEITWIDGTGTVMSNVRVTEEASVDGRRT 192
+ ++ L C++ P E++W V S V +A + +
Sbjct: 122 KVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYS 181
Query: 193 -TVKSTLVLTPKK-EHHNTTFTCQAQ 216
+ S L ++ + F CQ Q
Sbjct: 182 YCLSSRLRVSATFWHNPRNHFRCQVQ 207
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane,
immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B*
3q5t_A
Length = 240
Score = 38.8 bits (90), Expect = 0.004
Identities = 38/204 (18%), Positives = 65/204 (31%), Gaps = 25/204 (12%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGP----------HRNLSGF-DRYAMI 82
P+ G R L C I + W + R+ R++
Sbjct: 9 PRHIIKEKGGRSVLTCIPISGHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFS-- 66
Query: 83 GSDEEG-DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD---PPRIV 138
+ + + + L+D A Y C S E LTVL PP++
Sbjct: 67 VQQFDDYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGP-GTRLTVLEDLRNVTPPKVS 125
Query: 139 QGDT--LYTTEDREIELECISANGKP-PAEITWIDGTGTVMSNVRVTEEASVDGRRT-TV 194
+ ++ L C++ P E++W V S V +A + + ++
Sbjct: 126 LFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYSL 185
Query: 195 KSTLVLTPK--KEHHNTTFTCQAQ 216
S L ++ N F CQ Q
Sbjct: 186 SSRLRVSATFWHNPRN-HFRCQVQ 208
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 36.9 bits (85), Expect = 0.006
Identities = 19/106 (17%), Positives = 40/106 (37%), Gaps = 12/106 (11%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTGVLQ---WTKDDFALGPH--------RNLSGFDRYAMI 82
Q +V G +T+ C+ + + W K+ AL R ++ R+ +
Sbjct: 17 AQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIW 76
Query: 83 GSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
+ G +++ + + +D Y C++ + RF L V
Sbjct: 77 DDPDAGFFTVTMTDLREEDSGHYWCRIYRPSDNSVSKSVRF-YLVV 121
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 37.9 bits (88), Expect = 0.008
Identities = 27/199 (13%), Positives = 53/199 (26%), Gaps = 30/199 (15%)
Query: 33 EPQDQTAVVGSRVTLPCRV----IDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEG 88
P + ++GS L C + WT +
Sbjct: 10 RPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERD-----LCGCYSV 64
Query: 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRS-------RFATLTVLVPPDPPRIVQGD 141
L + + C + P + + +L PP +
Sbjct: 65 SSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPS-------E 117
Query: 142 TLYTTEDREIELECISANGKPP-AEITWIDGTGTVMSNVRVTEEASVDGRRT----TVKS 196
L E + L C++ P + W+ G+ + +T + + + V S
Sbjct: 118 ELALNE--LVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTS 175
Query: 197 TLVLTPKKEHHNTTFTCQA 215
L + + TF+C
Sbjct: 176 ILRVAAEDWKKGDTFSCMV 194
Score = 34.1 bits (78), Expect = 0.16
Identities = 30/142 (21%), Positives = 44/142 (30%), Gaps = 9/142 (6%)
Query: 149 REIELECISANGKPP--AEITW-IDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKE 205
E L C + TW + + + +V S L +
Sbjct: 20 SEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCG----CYSVSSVLPGCAEPW 75
Query: 206 HHNTTFTCQAQNTADRT-YKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEA-N 263
+H TFTC A +T K + P+V + S L V L C A +
Sbjct: 76 NHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFS 135
Query: 264 PSHMKYRWYINDQPVPAAASAT 285
P + RW Q +P T
Sbjct: 136 PKDVLVRWLQGSQELPREKYLT 157
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus
musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Length = 218
Score = 37.3 bits (87), Expect = 0.012
Identities = 34/143 (23%), Positives = 55/143 (38%), Gaps = 11/143 (7%)
Query: 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFAT-LTVLVPPDPPRIVQGDTLYTTE 147
D L I + +D+A Y C V I + T +TVL P + T++
Sbjct: 74 DRYLSISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTL---TVFPPS 130
Query: 148 DREIE-----LECISANGKP-PAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLT 201
E++ L C+ +N P + W + V T + +G + S L LT
Sbjct: 131 SEELKENKATLVCLISNFSPSGVTVAWKANGTPITQGV-DTSNPTKEGNKFMASSFLHLT 189
Query: 202 PKKEHHNTTFTCQAQNTADRTYK 224
+ + +FTCQ + D K
Sbjct: 190 SDQWRSHNSFTCQVTHEGDTVEK 212
>1ymm_D T cell receptor alpha chain; protein-protein complex, T cell
repertoire, auto-immunity, I system; HET: NAG; 3.50A
{Homo sapiens} SCOP: b.1.1.1
Length = 207
Score = 37.3 bits (86), Expect = 0.013
Identities = 36/192 (18%), Positives = 56/192 (29%), Gaps = 20/192 (10%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGF--------DRYAMIGSD 85
PQ + G T+ C LQW + + G + R +
Sbjct: 8 PQALSIQEGENATMNCSYKTSINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDT 67
Query: 86 EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYT 145
+ SL I D A Y C T I L VL P L
Sbjct: 68 SKKSSSLLITASRAADTASYFCATDTTSGTYKYIFGTGTRLKVLANIQNPD-PAVYQLRD 126
Query: 146 TEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKS-TLVLTPKK 204
++ + + C+ + + S+V +T++ +D R KS + V K
Sbjct: 127 SKSSDKSV-CL-FTDFDSQTNV----SQSKDSDVYITDKTVLDMRSMDFKSNSAVAWSNK 180
Query: 205 EHHNTTFTCQAQ 216
F C
Sbjct: 181 SD----FACANA 188
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 37.1 bits (86), Expect = 0.015
Identities = 33/171 (19%), Positives = 53/171 (30%), Gaps = 27/171 (15%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVP-------AAASATELYLTNITRHQHDSIVK 369
+G+ V L C + +YR Y + P + + +IT H +
Sbjct: 18 QGSPVTLRC--QGGQETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWE-HTGRYR 74
Query: 370 CEVHND-VGKSEDSETLDVTYGPRFRARPYSVQ----VDRGAGVNLLCDVDGNPAPEITW 424
C +D G+SE S+ L++ + S Q V+ G V L CD
Sbjct: 75 CYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCDSQVAFDG-FIL 133
Query: 425 IHEDSDKVV-----------GNSPNLTLLMTSDDLAGRYYCKASVMGFPEV 464
E D+ + ++ S Y C A P
Sbjct: 134 CKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNSPYE 184
Score = 36.0 bits (83), Expect = 0.034
Identities = 36/203 (17%), Positives = 63/203 (31%), Gaps = 38/203 (18%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDV-----------DGNPAPEITWIHEDSDKVVGNSPNL 593
P A P SV + +G+ V L C + AP IT I ++
Sbjct: 6 PTLWAEPGSV-ITQGSPVTLRCQGGQETQEYRLYREKKTAPWITRIPQEL----VKKGQF 60
Query: 594 TLLMTSDDLAGRYYCKA-------SVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTA 646
+ + + GRY C S P Y+K PT+ + + G
Sbjct: 61 PIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIK--PTLSAQPSPVVNSGGNV 118
Query: 647 RVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706
++C S + GE+ + + ++ + Y
Sbjct: 119 TLQCD--SQVAFDGFILCKEGEDEHPQCLNSQP----HARGSSRAIFSVGPVSPSRRWWY 172
Query: 707 NCS---VSNPYG----SDSVEIM 722
C ++PY SD +E++
Sbjct: 173 RCYAYDSNSPYEWSLPSDLLELL 195
Score = 34.4 bits (79), Expect = 0.11
Identities = 19/119 (15%), Positives = 34/119 (28%), Gaps = 10/119 (8%)
Query: 42 GSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDD 101
GS VTL C+ +T + ++ + + I + +
Sbjct: 19 GSPVTLRCQGGQETQEYRLYREKKTAPWITRIP---------QELVKKGQFPIPSITWEH 69
Query: 102 DARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANG 160
RY+C + G S L V P + + + L+C S
Sbjct: 70 TGRYRCYYGSDTAGRSE-SSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCDSQVA 127
Score = 30.2 bits (68), Expect = 2.2
Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 25/126 (19%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDV-----------DGNPAPEITWIHEDSDKVVGNSPNL 439
P A P SV + +G+ V L C + AP IT I ++
Sbjct: 6 PTLWAEPGSV-ITQGSPVTLRCQGGQETQEYRLYREKKTAPWITRIPQEL----VKKGQF 60
Query: 440 TLLMTSDDLAGRYYCKA-------SVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTA 492
+ + + GRY C S P Y+K PT+ + + G
Sbjct: 61 PIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIK--PTLSAQPSPVVNSGGNV 118
Query: 493 RVECSA 498
++C +
Sbjct: 119 TLQCDS 124
>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell
receptor, signalling, immune SY; 4.10A {Cricetulus
migratorius}
Length = 82
Score = 34.6 bits (79), Expect = 0.017
Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 9/80 (11%)
Query: 397 PYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSD-DLAGRYYCK 455
Y V + G V L C +D + W + + +L L S+ + +G Y C
Sbjct: 7 EYKVSIS-GTSVELTCPLD--SDENLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCY 63
Query: 456 ASVMGFPEVGAEATVYLKGR 475
P +YLK R
Sbjct: 64 T-----PASNKNTYLYLKAR 78
Score = 34.6 bits (79), Expect = 0.017
Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 9/80 (11%)
Query: 551 PYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSD-DLAGRYYCK 609
Y V + G V L C +D + W + + +L L S+ + +G Y C
Sbjct: 7 EYKVSIS-GTSVELTCPLD--SDENLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCY 63
Query: 610 ASVMGFPEVGAEATVYLKGR 629
P +YLK R
Sbjct: 64 T-----PASNKNTYLYLKAR 78
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V,
NKP44-like, natural killer cell IG-like receptor,
inhibitory receptor; 1.70A {Homo sapiens}
Length = 110
Score = 35.2 bits (81), Expect = 0.018
Identities = 15/108 (13%), Positives = 32/108 (29%), Gaps = 11/108 (10%)
Query: 34 PQDQTAVVGSRVTLPCR--VIDKTGVLQWTKDDFALGPHRNLSGF-------DRYAMIGS 84
+ VG +++ C +T W + + + R ++ S
Sbjct: 3 ARTVAGPVGGSLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRDS 62
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP 132
+++ + + +D Y C V T + V V P
Sbjct: 63 PANLSFTVTLENLTEEDAGTYWCGVDTP--WLQDFHDPVVEVEVSVFP 108
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 36.8 bits (85), Expect = 0.020
Identities = 37/201 (18%), Positives = 55/201 (27%), Gaps = 33/201 (16%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPA---------PEITWIHEDSDKVVGNSPNLTL 595
P A P + V V L C D T + N ++
Sbjct: 9 PSLLAHPGPL-VKSEETVILQCWSDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSI 67
Query: 596 LMTSDDLAGRYYCKASVMGFPEVGAEA------TV-YLKGRPTIISHRTQFGIPGDTARV 648
+ DLAG Y C SV P + + L +P++ + + G+ +
Sbjct: 68 SRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGENVTL 127
Query: 649 ECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC 708
CS S + S GE V H G Y C
Sbjct: 128 SCS--SRSSYDMYHLSREGEAHERRLPAGPKV-------NGTFQADFPLGPATHGGTYRC 178
Query: 709 S---VSNPYG----SDSVEIM 722
+PY SD + +
Sbjct: 179 FGSFHDSPYEWSKSSDPLLVS 199
Score = 33.3 bits (76), Expect = 0.25
Identities = 26/172 (15%), Positives = 43/172 (25%), Gaps = 28/172 (16%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVP---------AAASATELYLTNITRHQHDSI 367
V L C ++ + + S ++ +T+
Sbjct: 21 SEETVILQC--WSDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQ-DLAGT 77
Query: 368 VKCE---VHNDVGKSEDSETLDVT-----YGPRFRARPYSVQVDRGAGVNLLCDVDGNPA 419
+C H+ S S+ LD+ P A+P V G V L C +
Sbjct: 78 YRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPT-VLAGENVTLSCSSRSSYD 136
Query: 420 P-------EITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEV 464
E + V + + G Y C S P
Sbjct: 137 MYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRCFGSFHDSPYE 188
Score = 31.0 bits (70), Expect = 1.3
Identities = 29/153 (18%), Positives = 45/153 (29%), Gaps = 19/153 (12%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPA---------PEITWIHEDSDKVVGNSPNLTL 441
P A P + V V L C D T + N ++
Sbjct: 9 PSLLAHPGPL-VKSEETVILQCWSDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSI 67
Query: 442 LMTSDDLAGRYYCKASVMGFPEVGAEA------TV-YLKGRPTIISHRTQFGIPGDTARV 494
+ DLAG Y C SV P + + L +P++ + + G+ +
Sbjct: 68 SRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGENVTL 127
Query: 495 ECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVH 527
CS S + S GE V+
Sbjct: 128 SCS--SRSSYDMYHLSREGEAHERRLPAGPKVN 158
Score = 30.6 bits (69), Expect = 1.9
Identities = 15/117 (12%), Positives = 28/117 (23%), Gaps = 8/117 (6%)
Query: 42 GSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDD 101
V L C ++ R + G + + I + D
Sbjct: 22 EETVILQCWSDVMFEHFLLHREGMFNDTLRLIGEHHD----GVSKA---NFSISRMTQDL 74
Query: 102 DARYQCQVSTGILGEPA-IRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECIS 157
Y+C S S + ++ + P + + L C S
Sbjct: 75 AGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGENVTLSCSS 131
>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus
musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A
1d9k_A*
Length = 110
Score = 34.9 bits (81), Expect = 0.020
Identities = 20/88 (22%), Positives = 26/88 (29%), Gaps = 9/88 (10%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTGV-LQWTKDDFALGPHRNLSGF--------DRYAMIGS 84
PQ T G L C + W + GP +S R+ + +
Sbjct: 6 PQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFN 65
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTG 112
E SL I D A Y C S
Sbjct: 66 KREKKLSLHIADSQPGDSATYFCAASAN 93
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody,
immune system; NMR {Homo sapiens}
Length = 512
Score = 37.7 bits (87), Expect = 0.022
Identities = 36/291 (12%), Positives = 76/291 (26%), Gaps = 24/291 (8%)
Query: 13 VLLALSMGSLAQYREQKFAMEPQDQTAVVGSRVTLP----------CRVIDKTGVLQWTK 62
V + MG+ +Q + ++ +D + S+++ P C V +
Sbjct: 167 VTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWRQGEYKCVVQHTASKSKKEI 226
Query: 63 DDFALGPHRNLSGFDRYAMIGSDEEGDYS-LEIYPVMLDDDARYQCQVSTGILGEPAIRS 121
+ P S + + + E
Sbjct: 227 FRWPESPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETK 286
Query: 122 RFATLTVLVPPD----PPRIVQGDTLYTTEDREIELECISANGKPP-AEITW-IDGTGTV 175
+ P P + + C A +TW + G
Sbjct: 287 TPECPSHTQPLGVYLLTPAVQD-----LWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPT 341
Query: 176 MSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYA 235
E +G + S L L + T+ TC + + ++ L+ A
Sbjct: 342 GGVEEGLLERHSNGS-QSQHSRLTLPRSLWNAGTSVTCTLNHPSLPPQRLMALREPAAQA 400
Query: 236 PKVQVSVIGSNRLVEGTDVRLYCKAEA-NPSHMKYRWYINDQPVPAAASAT 285
P + ++ L C+ +P ++ W + + V + A
Sbjct: 401 PVKLSLNLLASSDPPEAASWLLCEVSGFSPPNILLMWLEDQREVNTSGFAP 451
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 35.3 bits (81), Expect = 0.022
Identities = 23/115 (20%), Positives = 34/115 (29%), Gaps = 17/115 (14%)
Query: 33 EPQDQTAVVGSRVTLPC--RVIDKTGVLQWTK-DDFALGPHRNLSGF-------DRYAMI 82
T V GS VTL + + L W D + + R +
Sbjct: 10 HLVHMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLD 69
Query: 83 GSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRI 137
+L I V +D++ Y +V + L VL P P I
Sbjct: 70 PQS----GALYISKVQKEDNSTYIMRVLKK--TGNEQEWKI-KLQVLDPVPKPVI 117
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 36.0 bits (82), Expect = 0.050
Identities = 28/194 (14%), Positives = 56/194 (28%), Gaps = 30/194 (15%)
Query: 32 MEPQDQTAVVGSRVTLPCRVIDKTGVL--------QWTKDDFALGPHRNLSGFDRYAMIG 83
+ P+ + S T C + +K W + F + +
Sbjct: 9 ISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQY----------- 57
Query: 84 SDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTL 143
+ S + + + + C + T G+ T+ +PP+ P+ +
Sbjct: 58 TIINRTASSVTFTDIASLNIQLTCNILT--FGQLEQNVYGITIISGLPPEKPKNLSCIVN 115
Query: 144 YTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPK 203
++ C G+ T T+ S + A +R T S V
Sbjct: 116 EGK-----KMRCEWDGGRETHLETNF----TLKSEWATHKFADCKAKRDTPTSCTVDYST 166
Query: 204 KEHHNTTFTCQAQN 217
N +A+N
Sbjct: 167 VYFVNIEVWVEAEN 180
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell
receptor delta, immune system; HET: NAG MAN FUC; 3.40A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 207
Score = 35.3 bits (81), Expect = 0.054
Identities = 32/197 (16%), Positives = 57/197 (28%), Gaps = 25/197 (12%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTGVLQWTKDD--------FALGPHRNLSG-FDRYAMIGS 84
P + G+ L C +QW + + F L +G S
Sbjct: 8 PSALSLHEGTDSALRCNFTTTMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSA--FDS 65
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSR----FATLTVLVPPDPPRIVQG 140
E +L I L+D Y C T + E F T + +
Sbjct: 66 KERRYSTLHIRDAQLEDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAK 125
Query: 141 DTLYTTEDREIELECISANGKP-PAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLV 199
+++ ++ + C+ + P I+ V + + S G+ + V L
Sbjct: 126 PSVFIMKNGTN-VACLVKDFYPKEVTISLRSSKKIVEFDPAIV--ISPSGKYSAV--KLG 180
Query: 200 LTPKKEHHNTTFTCQAQ 216
+ TC Q
Sbjct: 181 QYGDSN----SVTCSVQ 193
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist
peptide T-cell vaccines, transmembrane, immunoglobulin
domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D
2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D
3mv9_D 3utt_D 2cdg_A
Length = 203
Score = 35.3 bits (81), Expect = 0.057
Identities = 31/192 (16%), Positives = 55/192 (28%), Gaps = 18/192 (9%)
Query: 34 PQDQTAVVGSRVTLPCRV-IDKTGVLQWTKDDFALGPHRNLSGF--------DRYAMIGS 84
P + G + L C LQW + D G L R
Sbjct: 7 PAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLD 66
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLY 144
G +L I D A Y C V G T ++ P L
Sbjct: 67 KSSGRSTLYIAASQPGDSATYLCAVRPTSGGSYIPTFGRGTSLIVHPYIQNPDPAVYQLR 126
Query: 145 TTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKK 204
++ + + C+ + ++ + +++ V + S+D + ++ V K
Sbjct: 127 RSKSSDKSV-CLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKS----NSAVAWSNK 181
Query: 205 EHHNTTFTCQAQ 216
+ F C
Sbjct: 182 ----SDFACANA 189
>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A
4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D
1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D*
3uts_D 1qrn_D 3hg1_D 3rdt_A ...
Length = 208
Score = 35.0 bits (80), Expect = 0.078
Identities = 31/194 (15%), Positives = 58/194 (29%), Gaps = 23/194 (11%)
Query: 34 PQDQTAVVGSRVTLPCRV-IDKTGVLQWTKDDFALGPHRNLSGF-------DRYAMIGSD 85
P+ + G +L C W + GP +S F R+ +
Sbjct: 9 PESLSVPEGGMASLNCTSSDRNFQYFWWYRQHSGEGPKALMSIFSDGDKKEGRFTAHLNK 68
Query: 86 EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD---PPRIVQGDT 142
SL I D A Y C S + T + P P + Q
Sbjct: 69 ASLHVSLHIRDSQPSDSALYFCAASEQNNYAQGLTFGLGTRVSVFPYIQNPDPAVYQ--- 125
Query: 143 LYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTP 202
L ++ + + C+ + ++ + +++ V + S+D + ++ V
Sbjct: 126 LRDSKSSDKSV-CLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKS----NSAVAWS 180
Query: 203 KKEHHNTTFTCQAQ 216
K F C
Sbjct: 181 NKSD----FACANA 190
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1
neutralizing antibody, GP120, immune system; HET: PCA
MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L*
2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A*
1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A
1mcl_A* 1mcn_A* 1mcq_A 1mcr_A ...
Length = 211
Score = 34.7 bits (80), Expect = 0.079
Identities = 32/139 (23%), Positives = 54/139 (38%), Gaps = 7/139 (5%)
Query: 83 GSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD--PPRIVQG 140
GS SL + + DD+A Y C G I LTVL P P +
Sbjct: 61 GSKSGNTASLTVSGLQTDDEAVYYCGSLVGNW--DVIFGGGTKLTVLGQPKAAPSVTLFP 118
Query: 141 DTLYTTEDREIELECISANGKP-PAEITW-IDGTGTVMSNVRVTEEASVDGRRTTVKSTL 198
+ + + L C+ ++ P + W D + V + V T + + S L
Sbjct: 119 PSSEELQANKATLVCLISDFYPGAVTVAWKADSS-PVKAGVETTTPSKQSNNKYAASSYL 177
Query: 199 VLTPKKEHHNTTFTCQAQN 217
LTP++ + +++CQ +
Sbjct: 178 SLTPEQWKSHRSYSCQVTH 196
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A
1r70_B 3cm9_A
Length = 475
Score = 35.3 bits (81), Expect = 0.090
Identities = 36/234 (15%), Positives = 65/234 (27%), Gaps = 31/234 (13%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRV----IDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSD 85
P + ++GS L C + WT D
Sbjct: 250 SLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPE---------RD 300
Query: 86 EEGDYS----LEIYPVMLDDDARYQCQVSTGILGEPAIRSRF---ATLTVLVPPDPPRIV 138
G YS L + + C + P + T V PP
Sbjct: 301 LCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSE 360
Query: 139 QGDTLYTTEDREIELECISANGKP-PAEITWIDGTGTVMSNVRVTEEASVDGRRT----T 193
+ + + L C++ P + W+ G+ + +T + + +
Sbjct: 361 E-----LALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFA 415
Query: 194 VKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVAR-LKLLVKYAPKVQVSVIGSN 246
V S L + + TF+C + A + + L V VSV+ +
Sbjct: 416 VTSILRVAAEDWKKGDTFSCMVGHEALPLAFTQKTIDRLAGKPTHVNVSVVMAE 469
Score = 34.2 bits (78), Expect = 0.25
Identities = 29/143 (20%), Positives = 46/143 (32%), Gaps = 9/143 (6%)
Query: 148 DREIELECISANGKPPAEITWI---DGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKK 204
E L C + + +T+ + + + +V S L +
Sbjct: 262 GSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCG----CYSVSSVLPGCAEP 317
Query: 205 EHHNTTFTCQAQNTADRT-YKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEA- 262
+H TFTC A +T K + P+V + S L V L C A
Sbjct: 318 WNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGF 377
Query: 263 NPSHMKYRWYINDQPVPAAASAT 285
+P + RW Q +P T
Sbjct: 378 SPKDVLVRWLQGSQELPREKYLT 400
Score = 33.8 bits (77), Expect = 0.35
Identities = 26/153 (16%), Positives = 39/153 (25%), Gaps = 29/153 (18%)
Query: 597 MTSDDLAGRYYC-----KASVMGFPEVGAEATVYLKGRPTIISHRTQFGIP----GDTAR 647
+ +D A YYC F G V + +
Sbjct: 87 LRPEDTA-VYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSLCSTQPDGNVV 145
Query: 648 VECSA--FSIPPPEKVTWSYRGEEIGV--------GSSDDYSVLEDPLKEGIKSTLIIRE 697
+ C F P VTWS G+ + S D Y+ S L +
Sbjct: 146 IACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTS---------SQLTLPA 196
Query: 698 SRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFP 730
++ C V + + P S P
Sbjct: 197 TQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTP 229
Score = 30.7 bits (69), Expect = 2.7
Identities = 22/166 (13%), Positives = 47/166 (28%), Gaps = 20/166 (12%)
Query: 131 PPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVD-G 189
P P++ T D + + C+ P ++ R + G
Sbjct: 124 SPTSPKVFPLSLCSTQPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASG 183
Query: 190 RRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKY--------------- 234
T S L L + + TC ++ + + V +
Sbjct: 184 DLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPSPS 243
Query: 235 --APKVQVSVIGSNRLVEGTDVRLYCKAE--ANPSHMKYRWYINDQ 276
P++ + L+ G++ L C + S + + W +
Sbjct: 244 CCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSG 289
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex
(immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 212
Score = 34.6 bits (80), Expect = 0.096
Identities = 32/149 (21%), Positives = 52/149 (34%), Gaps = 31/149 (20%)
Query: 83 GSDEEGDYSLEIYPVMLDDDARYQCQVSTG--------------ILGEPAIRSRFATLTV 128
GS +L I +D+A Y C S G +L P ++ V
Sbjct: 62 GSTSGTTATLTISGAQPEDEAAYYCLSSYGDNNDLVFGSGTQLTVLRGPK-----SSPKV 116
Query: 129 LVPPDPPRIVQGDTLYTTEDREIELECISANGKP-PAEITW-IDGTGTVMSNVRVTEEAS 186
V P P ++ + L C+ + P A +TW +G T+ V+ T+ +
Sbjct: 117 TVFPPSPEELRTNKA--------TLVCLVNDFYPGSATVTWKANGA-TINDGVKTTKPSK 167
Query: 187 VDGRRTTVKSTLVLTPKKEHHNTTFTCQA 215
S L LT + + +CQ
Sbjct: 168 QGQ-NYMTSSYLSLTADQWKSHNRVSCQV 195
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 35.5 bits (81), Expect = 0.11
Identities = 19/106 (17%), Positives = 32/106 (30%), Gaps = 2/106 (1%)
Query: 875 YNQTLPKLAPSPHLPPSLSNSVIVTDKTPPPSHLTISSNSVDPRYSATYGNPYLRQSPNL 934
Y+ + + L S +V + ++ AT ++P
Sbjct: 1473 YSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTS 1532
Query: 935 PPPHTGQPPPPPYSSVRNGALPQA--TRLPSSPTSQFIVPNNTNHS 978
P P P S + P T SPTS P + ++S
Sbjct: 1533 PGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYS 1578
Score = 32.8 bits (74), Expect = 0.69
Identities = 25/100 (25%), Positives = 35/100 (35%), Gaps = 6/100 (6%)
Query: 883 APSPHLPPSLSNSVIVTDKTPPPSHLTISSNSVDPRYSATYGNPYLRQSPNLPPPHTGQP 942
SP P S + +P S + S + P YS T + SP P P
Sbjct: 1541 GFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS----YSPTSPSYSPTSP 1596
Query: 943 PPPPYSSVRNGALPQ--ATRLPSSPTSQFIVPNNTNHSTS 980
P S + P T SPTS P + ++S +
Sbjct: 1597 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1636
Score = 30.4 bits (68), Expect = 4.0
Identities = 26/109 (23%), Positives = 40/109 (36%), Gaps = 5/109 (4%)
Query: 874 DYNQTLPKLAP-SPHLPPSLSNSVIVTDKTPPPSHLTISSNSVDPRYSATYGNPYLRQSP 932
Y+ T P +P SP P+ + + P S S + P YS T +
Sbjct: 1583 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS---PSYSPTSPSYSPTSPSYSPTSPS 1639
Query: 933 NLPPPHTGQPPPPPYSSVRNGALPQA-TRLPSSPTSQFIVPNNTNHSTS 980
P + P P YS P + + P+SP+ P+ + S S
Sbjct: 1640 YSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1688
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 32.7 bits (75), Expect = 0.16
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKT---GVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDY 90
P+ T G +T+ C + D + G W + G ++S RY + +
Sbjct: 7 PRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSF 66
Query: 91 SLEIYPVMLDDDARYQCQVSTG 112
SL I + ++D Y+C +
Sbjct: 67 SLRINDLTVEDGGTYRCGLGVA 88
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 34.7 bits (79), Expect = 0.17
Identities = 12/80 (15%), Positives = 20/80 (25%)
Query: 900 DKTPPPSHLTISSNSVDPRYSATYGNPYLRQSPNLPPPHTGQPPPPPYSSVRNGALPQAT 959
S L + + ++ + PP P PPP + G P
Sbjct: 6 HHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTV 65
Query: 960 RLPSSPTSQFIVPNNTNHST 979
S P ++
Sbjct: 66 TGDSVLQRILRGPTGPGTTS 85
Score = 29.0 bits (64), Expect = 8.6
Identities = 21/88 (23%), Positives = 28/88 (31%), Gaps = 4/88 (4%)
Query: 882 LAPSPHLPPSLSNSVIVTDKTPPPSHLTISSNSVDPRYSATYGNPYLRQSPNLPPPHTGQ 941
+ S H S V PS S S + A P P PPP
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMVIPSA---SVTSAASDFLAALHPPVTVPDPAPPPPPAPA 57
Query: 942 PPPPPYSSVRNGALPQATRLPSSP-TSQ 968
PP + + L + R P+ P T+
Sbjct: 58 AGNPPDTVTGDSVLQRILRGPTGPGTTS 85
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 34.4 bits (79), Expect = 0.18
Identities = 32/177 (18%), Positives = 53/177 (29%), Gaps = 6/177 (3%)
Query: 105 YQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECIS-ANGKPP 163
Y C V+ + V PP+ DTL + E+ + ++ P
Sbjct: 295 YICNVNHKPSNTKVDKRVEPLSLPSVFLFPPK--PKDTLMISRTPEVTCVVVDVSHEDPQ 352
Query: 164 AEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTY 223
+ W V + E + V S L + + + C+ N A
Sbjct: 353 VKFNWYVDGVQVHNAKTKPREQQYNST-YRVVSVLTVLHQNWLDGKEYKCKVSNKALPAP 411
Query: 224 KVARLKLLVKYAPKVQVSVIG-SNRLVEGTDVRLYCKAEA-NPSHMKYRWYINDQPV 278
+ + QV + S + V L C + PS + W N QP
Sbjct: 412 IEKTISKAKGQPREPQVYTLPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQPE 468
Score = 31.7 bits (72), Expect = 1.3
Identities = 28/153 (18%), Positives = 50/153 (32%), Gaps = 12/153 (7%)
Query: 588 GNSPNLTL-LMTSDDLAGRYYCKA--SVMGFPEVGAEATVYLKGRPTIISHRTQF----- 639
G S +L + + ++D + YYC + S G V + G+P T F
Sbjct: 67 GTSASLAISGLEAEDES-DYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSE 125
Query: 640 GIPGDTARVECSA--FSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRE 697
+ + A + C F P V W G + G + K S L +
Sbjct: 126 ELQANKATLVCLISDFY-PGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTP 184
Query: 698 SRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFP 730
+ Y+C V++ + + +
Sbjct: 185 EQWKSHRSYSCQVTHEGSTVEKTVAPTECSAST 217
>2jju_A Signal regulatory protein beta-1; immunoglobulin domain,
immunoglobulin superfamily, immune system,
transmembrane, paired receptor; 1.19A {Homo sapiens}
PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A
Length = 127
Score = 32.7 bits (75), Expect = 0.19
Identities = 15/86 (17%), Positives = 25/86 (29%), Gaps = 14/86 (16%)
Query: 34 PQDQTAVVGSRVTLPCRVID--KTGVLQWTKDDFALGPHRNL---------SGFDRYAMI 82
+ + G TL C + G + W + G R L + +
Sbjct: 10 EKSVSVAAGESATLRCAMTSLIPVGPIMWFRGA---GAGRELIYNQKEGHFPRVTTVSEL 66
Query: 83 GSDEEGDYSLEIYPVMLDDDARYQCQ 108
D+S+ I + D Y C
Sbjct: 67 TKRNNLDFSISISNITPADAGTYYCV 92
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine;
HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Length = 240
Score = 33.8 bits (77), Expect = 0.20
Identities = 33/177 (18%), Positives = 52/177 (29%), Gaps = 9/177 (5%)
Query: 105 YQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELEC-ISANGKPP 163
C + PA L PP P DTL + E+ ++ P
Sbjct: 3 KSCDKTHTCPPCPAPELLGGPSVFLFPPKP-----KDTLMISRTPEVTCVVVDVSHEDPE 57
Query: 164 AEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTY 223
+ W V + E + V S L + + + + C+ N A
Sbjct: 58 VKFNWYVDGVEVHNAKTKPREEQYNST-YRVVSVLTVLHQDWLNGKEYKCKVSNKALPAP 116
Query: 224 KVARLKLLVKYAPKVQVSVIG-SNRLVEGTDVRLYCKAEA-NPSHMKYRWYINDQPV 278
+ + QV + S + V L C + PS + W N QP
Sbjct: 117 IEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPE 173
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin,
armadillo repeat, nuclear receptor LIGA binding domain,
protein binding; HET: P6L; 2.76A {Homo sapiens}
Length = 352
Score = 33.8 bits (77), Expect = 0.28
Identities = 14/122 (11%), Positives = 36/122 (29%), Gaps = 10/122 (8%)
Query: 877 QTLPKLAPSPHLPPSLSNSVIVTDKTPPPSHLTISSNSVDPRYSATYGNPYLRQSPNLPP 936
+ + ++ + +P L+ S + + L ++ ++ P +SP +
Sbjct: 5 EAMSQVIQA--MPSDLTISSAIQNIHSASKGLPLNHAALPP--------TDYDRSPFVTS 54
Query: 937 PHTGQPPPPPYSSVRNGALPQATRLPSSPTSQFIVPNNTNHSTSIKRGTLATHVPTKVRQ 996
P + PP +R S + + + T P +
Sbjct: 55 PISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPH 114
Query: 997 QV 998
+
Sbjct: 115 LI 116
Score = 30.3 bits (68), Expect = 3.5
Identities = 14/121 (11%), Positives = 32/121 (26%), Gaps = 5/121 (4%)
Query: 850 DAVFPSLKPDGHNNNGFVFSDFIRDYNQTLPKLAPSPHLPPSLSNSVIVTDKTPPPSHLT 909
+A+ ++ + S I++ + L + P + P +T
Sbjct: 5 EAMSQVIQAMPSDLT---ISSAIQNIHSASKGLPLNHAALPP--TDYDRSPFVTSPISMT 59
Query: 910 ISSNSVDPRYSATYGNPYLRQSPNLPPPHTGQPPPPPYSSVRNGALPQATRLPSSPTSQF 969
+ + Y P P P+T P S + + +
Sbjct: 60 MPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILEL 119
Query: 970 I 970
+
Sbjct: 120 L 120
>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4
protein; AB-ignar, AB-12Y-2, glycoprotein, membran
protease inhibitor; 2.05A {Orectolobus maculatus} PDB:
2z8w_C 2z8v_C 1ves_A 1ver_A
Length = 126
Score = 32.1 bits (73), Expect = 0.28
Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTGV---LQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDY 90
P+ T G +T+ C + D + W + +++S RY + +
Sbjct: 7 PRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSF 66
Query: 91 SLEIYPVMLDDDARYQCQVST 111
SL I + ++D Y+CQ
Sbjct: 67 SLRISDLRVEDSGTYKCQAFY 87
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET:
NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G*
3b9k_A* 2atp_A* 2arj_R
Length = 128
Score = 31.8 bits (72), Expect = 0.33
Identities = 16/128 (12%), Positives = 32/128 (25%), Gaps = 21/128 (16%)
Query: 26 REQKFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNL-------- 73
+ + + P+ A +G +V L C V+ L P +
Sbjct: 3 QAPELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNK 62
Query: 74 ----SGFD-RYAMIGSDEEG-DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLT 127
+ + Y L + +++ Y C V + S +
Sbjct: 63 ITWDEKLNSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVIS---NSVMYFSSVVPVL 119
Query: 128 VLVPPDPP 135
V
Sbjct: 120 QKVSSALV 127
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 34.0 bits (77), Expect = 0.33
Identities = 15/92 (16%), Positives = 25/92 (27%), Gaps = 7/92 (7%)
Query: 883 APSPHLPPSLSNSVIVTDKTPPPSHLTISSNSVDPRYSATYGNPYLRQSPNLPPPHTGQP 942
P PS+ TP L + + + + + +L P + P QP
Sbjct: 47 MPPQGAVPSMGQQ---QFLTPAQEQL----HQQIDQATTSMNDMHLHNVPLVDPNAYMQP 99
Query: 943 PPPPYSSVRNGALPQATRLPSSPTSQFIVPNN 974
P Q P+ + N
Sbjct: 100 QVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQN 131
Score = 31.7 bits (71), Expect = 1.4
Identities = 9/89 (10%), Positives = 18/89 (20%), Gaps = 5/89 (5%)
Query: 880 PKLAPSPHLPPSLSNSVIVTDKTPPPSHLTISSNSVDPRYSATYGNPYLRQSPNLPPPHT 939
P P+ +PP + + + P ++ +
Sbjct: 22 PLQQPAQFMPPQDPAAA-----GMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQA 76
Query: 940 GQPPPPPYSSVRNGALPQATRLPSSPTSQ 968
+ P A P P
Sbjct: 77 TTSMNDMHLHNVPLVDPNAYMQPQVPVQM 105
Score = 30.2 bits (67), Expect = 4.9
Identities = 15/69 (21%), Positives = 21/69 (30%), Gaps = 3/69 (4%)
Query: 904 PPSHLTISSNSVDPRYSATYGNPYLRQSPNLPPPHTGQPPPPPYSSVRNGALPQATRLPS 963
P + L N+ + A + P Q P GQ PP +V + Q
Sbjct: 10 PQAQLQYGQNATPLQQPAQFMPP---QDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQ 66
Query: 964 SPTSQFIVP 972
Q I
Sbjct: 67 EQLHQQIDQ 75
Score = 29.0 bits (64), Expect = 9.5
Identities = 9/66 (13%), Positives = 13/66 (19%)
Query: 903 PPPSHLTISSNSVDPRYSATYGNPYLRQSPNLPPPHTGQPPPPPYSSVRNGALPQATRLP 962
P DP + P Q P + + QAT
Sbjct: 21 TPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSM 80
Query: 963 SSPTSQ 968
+
Sbjct: 81 NDMHLH 86
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG,
immune system; 2.94A {Cricetulus migratorius} PDB:
3mj9_L*
Length = 213
Score = 32.7 bits (75), Expect = 0.35
Identities = 32/144 (22%), Positives = 49/144 (34%), Gaps = 17/144 (11%)
Query: 83 GSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD--------P 134
GS+ +L I D+A Y CQ G + +TVL P+ P
Sbjct: 63 GSNSGNMATLTISKAQAGDEADYYCQSWDGT-NSAWVFGSGTKVTVLGQPNAAPSVTLFP 121
Query: 135 PRIVQGDTLYTTEDREIELECISANGKP-PAEITWIDGTGTVMSNVRVTEEASVDGRRTT 193
P + T T L C+ P +TW + V+ T+ + D +
Sbjct: 122 PSSEELKTNQAT------LVCMINGFYPADVAVTWEADGTPITQGVKTTQPSKSDS-KYM 174
Query: 194 VKSTLVLTPKKEHHNTTFTCQAQN 217
S L +T TF C+ +
Sbjct: 175 ATSYLTMTADAWKSRNTFICKVTH 198
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin,
glycosylation, immune system; HET: NAG FUC MAN GAL;
2.13A {Mus musculus}
Length = 218
Score = 33.0 bits (75), Expect = 0.37
Identities = 26/155 (16%), Positives = 47/155 (30%), Gaps = 13/155 (8%)
Query: 129 LVPPDPPRIVQGDTLYTTEDREIELECISANGKPP---AEITWIDGTGTVMSNVRVTEEA 185
+ PP+ D L + ++ C+ + +I+W V + T
Sbjct: 14 IFPPNI-----KDVLMIS--LTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHRE 66
Query: 186 SVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIG- 244
+ V STL + + F C+ N + + + QV ++
Sbjct: 67 DYNST-IRVVSTLPIQHQDWMSGKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPP 125
Query: 245 SNRLVEGTDVRLYCKAEA-NPSHMKYRWYINDQPV 278
+ DV L C NP + W N
Sbjct: 126 PAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTE 160
Score = 29.9 bits (67), Expect = 3.1
Identities = 20/134 (14%), Positives = 39/134 (29%), Gaps = 20/134 (14%)
Query: 92 LEIYPVMLDDDARYQCQVS--------TGILGEPAIRSRFATLTVLVPPDPPRIVQGDTL 143
L I ++C+V+ + + R + +L PP
Sbjct: 78 LPIQHQDWMSGKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAEQ-------- 129
Query: 144 YTTEDREIELECISANGKPP-AEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTP 202
+++ L C+ P + W G N + T + S L +
Sbjct: 130 --LSRKDVSLTCLVVGFNPGDISVEWTSN-GHTEENYKDTAPVLDSDGSYFIYSKLNMKT 186
Query: 203 KKEHHNTTFTCQAQ 216
K +F+C +
Sbjct: 187 SKWEKTDSFSCNVR 200
>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1,
CD172B antigen, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 136
Score = 31.8 bits (73), Expect = 0.43
Identities = 16/87 (18%), Positives = 26/87 (29%), Gaps = 16/87 (18%)
Query: 34 PQDQTAVVGSRVTLPCRV---IDKTGVLQWTKDDFALGPHRNL---------SGFDRYAM 81
+ + G TL C + I G + W + G R L +
Sbjct: 15 EKSVSVAAGESATLRCAMTSLIP-VGPIMWFRGA---GAGRELIYNQKEGHFPRVTTVSE 70
Query: 82 IGSDEEGDYSLEIYPVMLDDDARYQCQ 108
+ D+S+ I + D Y C
Sbjct: 71 LTKRNNLDFSISISNITPADAGTYYCV 97
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 31.4 bits (71), Expect = 0.46
Identities = 20/107 (18%), Positives = 29/107 (27%), Gaps = 24/107 (22%)
Query: 38 TAVVGSRVTLPCRV-------------IDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGS 84
A GS VTL +L++ + R +
Sbjct: 14 NAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFK--GRVYL--- 68
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVP 131
EE + +L I V +D Y +V TL V P
Sbjct: 69 -EENNGALHISNVRKEDKGTYYMRVLRET-----ENELKITLEVFDP 109
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse
IGG, zinc-finger, DNA-binding, RNA-binding, tripartite
motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus
musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Length = 207
Score = 32.5 bits (74), Expect = 0.48
Identities = 29/186 (15%), Positives = 50/186 (26%), Gaps = 12/186 (6%)
Query: 37 QTAVVGSRVTLPCRVID-----KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYS 91
+ + C V+D W DD R S
Sbjct: 13 DVLTITLTPKVTCVVVDISKDDPEVQFSWFVDD---VEVHTAQTKPREEQFNSTFRSVSE 69
Query: 92 LEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREI 151
L I + ++C+V++ P ++ T P + + ++
Sbjct: 70 LPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKEQMAKD--KV 127
Query: 152 ELECISANGKPPA-EITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTT 210
L C+ + P + W G N + T+ V S L + T
Sbjct: 128 SLTCMITDFFPEDITVEWESN-GQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNT 186
Query: 211 FTCQAQ 216
FTC
Sbjct: 187 FTCSVL 192
Score = 31.8 bits (72), Expect = 0.87
Identities = 18/117 (15%), Positives = 32/117 (27%), Gaps = 3/117 (2%)
Query: 164 AEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTY 223
+ +W V + E + S L + + + F C+ + A
Sbjct: 37 VQFSWFVDDVEVHTAQTKPREEQFNSTFR-SVSELPIMHQDWLNGKEFKCRVNSAAFPAP 95
Query: 224 KVARLKLLVKYAPKVQVSVIGSNR-LVEGTDVRLYCKAEA-NPSHMKYRWYINDQPV 278
+ QV + + + V L C P + W N QP
Sbjct: 96 IEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPA 152
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune
system, antibody, ENA11His antibody, immunoglobulin
domain; 2.75A {Mus musculus}
Length = 254
Score = 32.4 bits (74), Expect = 0.51
Identities = 30/147 (20%), Positives = 49/147 (33%), Gaps = 28/147 (19%)
Query: 83 GSDEEGDYSLEIYPVMLDDDARYQCQVSTGI-----------LGEPAIRSRFATLTVLVP 131
GS D++L+I V +D Y C + L A TV +
Sbjct: 106 GSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRAD-----AAPTVSIF 160
Query: 132 PDPPRIVQGDTLYTTEDREIELECISANGKP-PAEITWIDGTGTVMSNV--RVTEEASVD 188
P + + C N P + W + V T++ S D
Sbjct: 161 PPSSEQLTSGGA--------SVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKD 212
Query: 189 GRRTTVKSTLVLTPKKEHHNTTFTCQA 215
++ STL LT + + ++TC+A
Sbjct: 213 S-TYSMSSTLTLTKDEYERHNSYTCEA 238
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C
region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
b.1.1.2
Length = 444
Score = 33.0 bits (75), Expect = 0.55
Identities = 23/134 (17%), Positives = 44/134 (32%), Gaps = 12/134 (8%)
Query: 91 SLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTED-- 148
+L I ++C+V+ L P T+ P R Q L E+
Sbjct: 306 ALPIQHQDWMSGKEFKCKVNNKDLPAPI------ERTISKPKGSVRAPQVYVLPPPEEEM 359
Query: 149 --REIELEC-ISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKE 205
+++ L C ++ + W + T N + TE + S L + K
Sbjct: 360 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTE-LNYKNTEPVLDSDGSYFMYSKLRVEKKNW 418
Query: 206 HHNTTFTCQAQNTA 219
+++C +
Sbjct: 419 VERNSYSCSVVHEG 432
Score = 31.8 bits (72), Expect = 1.2
Identities = 42/279 (15%), Positives = 74/279 (26%), Gaps = 39/279 (13%)
Query: 42 GSRVTLPCRVID---KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVM 98
GS VTL C V + L W + SG + + Y+L V
Sbjct: 138 GSSVTLGCLVKGYFPEPVTLTWNSGSLS-------SGVHTFPAVLQS--DLYTL-SSSVT 187
Query: 99 LD----DDARYQCQV-----STGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYT---- 145
+ C V ST + + R P ++ G +++
Sbjct: 188 VTSSTWPSQSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPK 247
Query: 146 -----TEDREIELECISANG----KPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKS 196
+ C+ P +I+W V + T + V S
Sbjct: 248 IKDVLMISLSPIVTCV-VVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNST-LRVVS 305
Query: 197 TLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVI-GSNRLVEGTDVR 255
L + + F C+ N + QV V+ + V
Sbjct: 306 ALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPPEEEMTKKQVT 365
Query: 256 LYCKAEA-NPSHMKYRWYINDQPVPAAASATELYLTNIT 293
L C P + W N + + + ++ +
Sbjct: 366 LTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGS 404
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 33.1 bits (75), Expect = 0.57
Identities = 26/106 (24%), Positives = 38/106 (35%), Gaps = 11/106 (10%)
Query: 875 YNQTLPKLAPSPHLPPSLSNSVIVTDKTPPPSHLTISSNSVDPRYSATYGNPYLRQSPNL 934
Y+ T P +P+ S S T + P+ + S S P YS T
Sbjct: 1648 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS--PSYSPT-------SPSYS 1698
Query: 935 PPPHTGQPPPPPYSSVRNGALPQATRLPSSPTSQFIVPNNTNHSTS 980
P + P P YS P + SPTS P + ++S +
Sbjct: 1699 PTSPSYSPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPT 1742
Score = 30.4 bits (68), Expect = 3.7
Identities = 17/108 (15%), Positives = 30/108 (27%), Gaps = 4/108 (3%)
Query: 875 YNQTLPKLAPSPHLPPSLSNSVIVTDKTPPPSHLTISSNSVDPRYSATYGNPYLRQSPNL 934
Y ++ + P + + S +V + +P +
Sbjct: 1486 YERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSS 1545
Query: 935 PPPHTGQPPPPPYSSVRNGALPQATRLPSS----PTSQFIVPNNTNHS 978
P YS G +PSS PTS P + ++S
Sbjct: 1546 AMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYS 1593
>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold,
antibody, immune system; NMR {Homo sapiens}
Length = 376
Score = 32.6 bits (73), Expect = 0.58
Identities = 24/134 (17%), Positives = 41/134 (30%), Gaps = 18/134 (13%)
Query: 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRF-------ATLTVLVPPDPPRIVQGD 141
L I + ++C+V++ P ++ A +PP P + D
Sbjct: 232 VSELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQLYTIPP-PKEQMAKD 290
Query: 142 TLYTTEDREIELECISANGKPPA-EITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVL 200
+ T C+ + P + W G N + T+ V S L +
Sbjct: 291 KVSLT--------CMITDFFPEDITVEWQWN-GQPAENYKNTQPIMNTNESYFVYSKLNV 341
Query: 201 TPKKEHHNTTFTCQ 214
TFTC
Sbjct: 342 QKSNWEAGNTFTCS 355
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 32.9 bits (75), Expect = 0.62
Identities = 19/130 (14%), Positives = 37/130 (28%), Gaps = 4/130 (3%)
Query: 91 SLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDRE 150
L + + Y+C+VS PA + + P +P + +
Sbjct: 315 VLTVLHQDWLNGKEYKCKVSNK--ALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQ 372
Query: 151 IELEC-ISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNT 209
+ L C + + W + DG + S L + +
Sbjct: 373 VSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGS-FFLYSKLTVDKSRWQQGN 431
Query: 210 TFTCQAQNTA 219
F+C + A
Sbjct: 432 VFSCSVMHEA 441
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II,
MEM receptor, molecular mimicry, multiple sclerosis,
immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo
sapiens}
Length = 279
Score = 32.2 bits (73), Expect = 0.67
Identities = 28/165 (16%), Positives = 52/165 (31%), Gaps = 28/165 (16%)
Query: 588 GNSPNLTLLMTS---DDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIP-- 642
+ TL +TS +D + Y C A + + G ++ + P
Sbjct: 95 ASLTLSTLTVTSAHPEDSS-FYICSARDLTSG--ANNEQFFGPGTRLTVTEDLKNVFPPE 151
Query: 643 -------------GDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688
A + C A P +++W G+E+ G S D L++
Sbjct: 152 VAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALN 211
Query: 689 -----IKSTLIIRESR-HDHFGVYNCSVSNPYGSDSVEIMLKPQK 727
+ S L + + + + C V S++ E K
Sbjct: 212 DSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWTQDRAK 256
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_A
Length = 231
Score = 32.3 bits (73), Expect = 0.67
Identities = 17/90 (18%), Positives = 25/90 (27%), Gaps = 2/90 (2%)
Query: 876 NQTLPKLAPSPHLPPSLSNSVIVTDKTPPPSHLTISSNSVDPRYSATYGNPYLRQSPNLP 935
+ +P P P P L+ V P + +A + +P
Sbjct: 111 GRGIPAGVPMPQAPAGLAGPV--RGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQY 168
Query: 936 PPHTGQPPPPPYSSVRNGALPQATRLPSSP 965
PP G PPPP + P
Sbjct: 169 PPGRGGPPPPMGRGAPPPGMMGPPPGMRPP 198
Score = 30.4 bits (68), Expect = 2.3
Identities = 15/66 (22%), Positives = 20/66 (30%)
Query: 880 PKLAPSPHLPPSLSNSVIVTDKTPPPSHLTISSNSVDPRYSATYGNPYLRQSPNLPPPHT 939
PP + PP + + P G P R +P PP
Sbjct: 160 SIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPG 219
Query: 940 GQPPPP 945
+PPPP
Sbjct: 220 MRPPPP 225
>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, cell membrane, glycoprotein; 1.80A {Homo
sapiens} PDB: 3rp1_A
Length = 106
Score = 30.4 bits (69), Expect = 0.69
Identities = 17/110 (15%), Positives = 30/110 (27%), Gaps = 14/110 (12%)
Query: 629 RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688
RP+I + G C P + R + +D +
Sbjct: 9 RPSISAEPGTVIPLGSHVTFVCRG---PVGVQTFRLERE---SRSTYNDTEDVSQASPSE 62
Query: 689 IKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFPLLLILTGV 738
++ I + G Y C P S ++S L L++
Sbjct: 63 SEARFRIDSVSEGNAGPYRCIYYKPPKW-S-------EQSDYLELLVKEA 104
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 32.6 bits (73), Expect = 0.69
Identities = 40/299 (13%), Positives = 76/299 (25%), Gaps = 41/299 (13%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTGVLQ------WTKDDFALGPHRNLSGFDRYAMIGSDEE 87
+G +T C + L W R + +
Sbjct: 7 VSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPG-------GRQQRLSDGTQ 59
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTE 147
S+ P + A C ++ G + L PP P + TT
Sbjct: 60 --ESIITLPHLNHTQAFLSCSLNWGNSLQI---LDQVELRAGYPPAIPHNLSCLMNLTTS 114
Query: 148 DREIELECISANGKPPAEIT------WIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLT 201
L C G T + + + DG+ ++
Sbjct: 115 S----LICQWEPGPETHLPTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHC---SIPRK 167
Query: 202 PKKEHHNTTFTCQAQN---TADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGT--DVRL 256
+ N QA+N T+ +VK P + ++ S ++L
Sbjct: 168 HLLLYQNMGIWVQAENALGTSMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQL 227
Query: 257 YCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQH-----DSIVKCEVQVSVI 310
+ H+ + + +P AS + + Q+ +Q+ I
Sbjct: 228 SWEPWQPGLHINQKCELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCI 286
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2
Length = 185
Score = 31.8 bits (72), Expect = 0.78
Identities = 18/90 (20%), Positives = 25/90 (27%), Gaps = 9/90 (10%)
Query: 34 PQDQTAVVGSRVTLPCRV-IDKTGVLQWTKDDFALGPHRNLSGF--------DRYAMIGS 84
PQ T G L C W P ++ R+ + +
Sbjct: 7 PQSLTVWEGETAILNCSYEDSTFDYFPWYHQFPGESPALLIAIRPVSNKKEDGRFTIFFN 66
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGIL 114
E +SL I D A Y C S +
Sbjct: 67 KREKKFSLHIADSQPGDSATYFCAASDNRI 96
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit,
conformation-specific, amyloid, immune system; 1.54A
{Oryctolagus cuniculus}
Length = 213
Score = 31.8 bits (73), Expect = 0.80
Identities = 34/146 (23%), Positives = 57/146 (39%), Gaps = 33/146 (22%)
Query: 89 DYSLEIYPVMLDDDARYQCQVSTG--------------ILGEPAIRSRFATLTVLVPPDP 134
D++L I + D A Y CQ + + G+P TVL+ P
Sbjct: 70 DFTLTISDLECADAATYYCQSTYENPTYVSFGGGTEVGVKGDPV------APTVLIFPPS 123
Query: 135 PRIVQGDTLYTTEDREIELECISANGKPPAEITW-IDGTGTVMSNV--RVTEEASVDGRR 191
+V T+ + C++ P +TW +DGT T + + T + S D
Sbjct: 124 ADLVATGTV--------TIVCVANKYFPDVTVTWEVDGT-TQTTGIENSKTPQNSADCT- 173
Query: 192 TTVKSTLVLTPKKEHHNTTFTCQAQN 217
+ STL LT + + + +TC+
Sbjct: 174 YNLSSTLTLTSTEYNSHKEYTCKVTQ 199
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system;
2.68A {Homo sapiens} PDB: 3hg1_E
Length = 245
Score = 31.7 bits (72), Expect = 0.84
Identities = 30/177 (16%), Positives = 60/177 (33%), Gaps = 25/177 (14%)
Query: 74 SGF-DRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQ--VSTGILGEPAIRSRFATLTVLV 130
S + ++ + L ++L D Y C VS G + LTV+
Sbjct: 58 SEVPQNLS-ASRPQDRQFILSSKKLLLSDSGFYLCAWSVSVGAGVPTIYFGEGSWLTVVE 116
Query: 131 PPDPPRIVQGDTLY--------TTEDREIELECISANGKP-PAEITWIDGTGTVMSNVR- 180
+ + + ++ L C++ P E++W V S V
Sbjct: 117 DLNKVFPP---EVAVFEPSEAEISHTQKATLVCLATGFFPDHVELSWWVNGKEVHSGVCT 173
Query: 181 ----VTEEASVDGRRTTVKSTLVLTPKK-EHHNTTFTCQAQ---NTADRTYKVARLK 229
+ E+ +++ R + S L ++ ++ F CQ Q + + + R K
Sbjct: 174 DPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWTQDRAK 230
Score = 31.4 bits (71), Expect = 1.4
Identities = 23/163 (14%), Positives = 43/163 (26%), Gaps = 26/163 (15%)
Query: 589 NSPNLTLLMTS---DDLAGRYYCKASVMGFPEVGAEAT------VYLKGRPTIISHRTQF 639
L D +G Y C A + + + +
Sbjct: 70 QDRQFILSSKKLLLSD-SGFYLC-AWSVSVGAGVPTIYFGEGSWLTVVEDLNKVFPPEVA 127
Query: 640 GIP--------GDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG-- 688
A + C A P +++W G+E+ G D L++
Sbjct: 128 VFEPSEAEISHTQKATLVCLATGFFPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDS 187
Query: 689 ---IKSTLIIRESR-HDHFGVYNCSVSNPYGSDSVEIMLKPQK 727
+ S L + + + + C V S++ E K
Sbjct: 188 RYALSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWTQDRAK 230
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 32.2 bits (73), Expect = 0.85
Identities = 22/130 (16%), Positives = 39/130 (30%), Gaps = 4/130 (3%)
Query: 91 SLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDRE 150
+L I + ++C+V++ PA + + T P P +
Sbjct: 296 ALPIMHQDWLNGKEFKCRVNSA--AFPAPIEKTISKTKGKPRAPQVYTIPPPKEQMAKDK 353
Query: 151 IELECISANGKP-PAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNT 209
+ L C+ + P + W + DG V S L +
Sbjct: 354 VSLTCMITDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGS-YFVYSKLNVQKSNWEAGN 412
Query: 210 TFTCQAQNTA 219
TFTC +
Sbjct: 413 TFTCSVLHEG 422
>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I
immune system; HET: NAG; 2.89A {Mus musculus}
Length = 229
Score = 31.9 bits (72), Expect = 0.88
Identities = 33/199 (16%), Positives = 61/199 (30%), Gaps = 20/199 (10%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPH---RNLSGF---DRYAMIGSDEE 87
P + G+ L C +QW + + G R + +E
Sbjct: 8 PPALSLYEGADSGLRCNFSTTMKSVQWFQQNHRGRLITLFYLAQGTKENGRLKSTFNSKE 67
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVL--VPPDPPRIVQGDTLYT 145
+L I L+D Y C G G I L+V + P + Q L
Sbjct: 68 RYSTLHIKDAQLEDSGTYFCAAEDGGSGNKLIFGTGTLLSVKPNIQNPEPAVYQ---LKD 124
Query: 146 TEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKE 205
++ L C+ + + +GT +++ V + ++D + + + +
Sbjct: 125 PRSQDSTL-CLFTDFDSQINVPKTMESGTFITDKCVLDMKAMDSKS----NGAIAWSNQT 179
Query: 206 HHNTTFTCQAQNTADRTYK 224
FTCQ
Sbjct: 180 S----FTCQDIFKETNATY 194
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A
{Saccharomyces cerevisiae}
Length = 350
Score = 31.9 bits (71), Expect = 0.94
Identities = 11/48 (22%), Positives = 17/48 (35%)
Query: 916 DPRYSATYGNPYLRQSPNLPPPHTGQPPPPPYSSVRNGALPQATRLPS 963
+ S Y NP + S PP PPP +++ P +
Sbjct: 4 KAQLSNGYNNPNVNASNMYGPPQNMSLPPPQTQTIQGTDQPYQYSQCT 51
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 166
Score = 31.1 bits (70), Expect = 1.1
Identities = 21/137 (15%), Positives = 40/137 (29%), Gaps = 23/137 (16%)
Query: 23 AQYREQKFAMEPQDQTAVVGSRVTLPCRVI-DKTGVLQW--TKDDFALGPHRNL------ 73
A+ + + + P+ A +G +V L C V+ + W L +
Sbjct: 5 AKPQAPELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASS 64
Query: 74 -------SGFD--RYAMIGSDEEGDYSLEIYPVMLDDDARYQCQ-----VSTGILGEPAI 119
+ + D Y L + +++ Y C V P +
Sbjct: 65 HNKITWDEKLNSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVL 124
Query: 120 RSRFATLTVLVPPDPPR 136
+ +T T V P
Sbjct: 125 QKVNSTTTKPVLRTPSP 141
>3czg_A Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; 1.80A
{Xanthomonas axonopodis PV} PDB: 3cze_A* 3czl_A* 3czk_A*
2wpg_A
Length = 644
Score = 31.8 bits (72), Expect = 1.3
Identities = 15/124 (12%), Positives = 30/124 (24%), Gaps = 10/124 (8%)
Query: 421 EITW-IHEDSDKVVGNSPNLTLLMTSDDLAGRYYC---KASVMGFPEVG----AEATVYL 472
+I W + + P +L + A + G L
Sbjct: 393 DIGWNVLQHEACGNAAQPPFSLRDVARFYANAVPGSYARGESFQSSGDGVHGTNGMAAAL 452
Query: 473 KGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGK 532
G + R+ V Y G+E+ + +D +D +
Sbjct: 453 AGIQAAQEAGDAAALAVAVDRLVLLYAIALAMPGVPLIYMGDELAMV--NDPGYRDDPHR 510
Query: 533 SEDS 536
+
Sbjct: 511 QHEG 514
Score = 30.6 bits (69), Expect = 2.9
Identities = 16/122 (13%), Positives = 31/122 (25%), Gaps = 10/122 (8%)
Query: 575 EITW-IHEDSDKVVGNSPNLTLLMTSDDLAGRYYC---KASVMGFPEVG----AEATVYL 626
+I W + + P +L + A + G L
Sbjct: 393 DIGWNVLQHEACGNAAQPPFSLRDVARFYANAVPGSYARGESFQSSGDGVHGTNGMAAAL 452
Query: 627 KGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLK 686
G + R+ V Y G+E+ + +D +DP +
Sbjct: 453 AGIQAAQEAGDAAALAVAVDRLVLLYAIALAMPGVPLIYMGDELAMV--NDPGYRDDPHR 510
Query: 687 EG 688
+
Sbjct: 511 QH 512
>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate
immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus
musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C*
3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C*
3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C*
3sdc_C* ...
Length = 229
Score = 31.2 bits (70), Expect = 1.5
Identities = 32/195 (16%), Positives = 62/195 (31%), Gaps = 23/195 (11%)
Query: 34 PQDQTAVVGSRVTLPCRV-IDKTGVLQWTKDDFALGPHRNLSGF--------DRYAMIGS 84
PQ G L C + L+W K D G RY+
Sbjct: 8 PQSLVVRQGENCVLQCNYSVTPDNHLRWYKQDTGKGLVLLTVLVDQKDKTSNGRYSATLD 67
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLY 144
+ +L I +LDD A Y C V ++ + + P+P +Y
Sbjct: 68 KDAKHSTLHITATLLDDTATYFCVVGDRGSALFGSGTQLIVIPYIQNPEP-------AVY 120
Query: 145 TTEDREIE--LECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTV-----KST 197
+D + C+ + + +GT +++ V + ++D + +++
Sbjct: 121 QLKDPRSQDSTLCLFTDFDSQINVPKTMESGTFITDKCVLDMKAMDSKSNGAIAWSNQTS 180
Query: 198 LVLTPKKEHHNTTFT 212
+ N T+
Sbjct: 181 FTCQDIFKETNATYP 195
>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1,
costimulatory, immune system; 2.10A {Homo sapiens}
Length = 129
Score = 30.0 bits (68), Expect = 1.6
Identities = 16/88 (18%), Positives = 26/88 (29%), Gaps = 11/88 (12%)
Query: 34 PQDQTAVVGSRVTLPCRVID--KTGVLQW--------TKDDFALGPHRNLSGF-DRYAMI 82
P G T C + ++ VL W T A R+ G R+ +
Sbjct: 8 PALLVVTEGDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVT 67
Query: 83 GSDEEGDYSLEIYPVMLDDDARYQCQVS 110
D+ + + +D Y C
Sbjct: 68 QLPNGRDFHMSVVRARRNDSGTYLCGAI 95
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid
factor IGG1-FC, immunoglobulin C region, membrane,
glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG
GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 234
Score = 30.8 bits (70), Expect = 1.6
Identities = 54/225 (24%), Positives = 83/225 (36%), Gaps = 33/225 (14%)
Query: 11 LWVLLALSMGSLAQYREQKFAM-EPQDQTAVVGSRVTLPCR----VIDKTGVLQW--TKD 63
L LL GS AQ + +P + G RVT+ C I V W
Sbjct: 7 LLTLLTHCAGSWAQS-----VLTQPPSASGTPGQRVTISCSGSSSNIGSNYV-YWYQQLP 60
Query: 64 DFA-----LGPHRNLSGF-DRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEP 117
A ++ SG DR++ GS SL I + +D+A Y C L
Sbjct: 61 GTAPKLLIYRNNQRPSGVPDRFS--GSKSGTSASLAISGLRSEDEADYYCATWDDSLSAV 118
Query: 118 AIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIE-----LECISANGKP-PAEITW-ID 170
F T L P+ TL+ E++ L C+ ++ P + W D
Sbjct: 119 I----FGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKAD 174
Query: 171 GTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQA 215
G V + V T+ + + S L LTP++ + +++CQ
Sbjct: 175 GA-PVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQV 218
>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I
MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*
Length = 194
Score = 30.8 bits (69), Expect = 1.6
Identities = 28/193 (14%), Positives = 52/193 (26%), Gaps = 20/193 (10%)
Query: 34 PQDQTAVVGSRVTLPCR-VIDKTGVLQWTKDDFALGPHRNLSGF--------DRYAMIGS 84
T G V L C + L W P L F +
Sbjct: 8 EGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLH 67
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFAT-LTVLVPPDPPRIVQGDTL 143
+ L+ L D A Y C + + F ++ V P+
Sbjct: 68 KSSSSFHLQKSSAQLSDSALYYCALFLASSS--FSKLVFGQGTSLSVVPNIQNPEPAVYQ 125
Query: 144 YTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPK 203
+ C+ + + +GT +++ V + ++D + + +
Sbjct: 126 LKDPRSQDSTLCLFTDFDSQINVPKTMESGTFITDKTVLDMKAMDSKS----NGAIAWSN 181
Query: 204 KEHHNTTFTCQAQ 216
+ FTCQ
Sbjct: 182 QTS----FTCQDI 190
>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B,
CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin
protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB:
3kho_A*
Length = 133
Score = 30.0 bits (68), Expect = 1.6
Identities = 22/112 (19%), Positives = 37/112 (33%), Gaps = 7/112 (6%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTGVLQW--TKDDFALGPHRNLSGFDRYAMIGSDEEGDYS 91
P+ S V C + +G L W + P +S R + Y+
Sbjct: 24 PRFAAKKRSSMVKFHCYT-NHSGALTWFRKRGSQQ--PQELVSEEGRIV--QTQNGSVYT 78
Query: 92 LEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTL 143
L I + +D+ Y C+ S L VL ++ + +TL
Sbjct: 79 LTIQNIQYEDNGIYFCKQKCDSANHNVTDSCGTELLVLGFSTLDQLKRRNTL 130
>2bc4_A HLA class II histocompatibility antigen, DM alpha chain; MHC class
II, immune system; HET: NDG BMA; 2.27A {Homo sapiens}
PDB: 1hdm_A 1k8i_A*
Length = 211
Score = 30.5 bits (68), Expect = 2.0
Identities = 11/76 (14%), Positives = 23/76 (30%), Gaps = 2/76 (2%)
Query: 449 AGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSI-PPPEKV 507
+ +C+ + +G P + G + C ++ PP V
Sbjct: 74 FDKEFCEWMIQQIGPKLDGKIPVSRGFPIAEVFTLKPLEFGKPNTLVCFVSNLFPPMLTV 133
Query: 508 TWSYRGEEI-GVGSSD 522
W + + G G +
Sbjct: 134 NWQHHSVPVEGFGPTF 149
Score = 30.5 bits (68), Expect = 2.0
Identities = 11/76 (14%), Positives = 23/76 (30%), Gaps = 2/76 (2%)
Query: 603 AGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSI-PPPEKV 661
+ +C+ + +G P + G + C ++ PP V
Sbjct: 74 FDKEFCEWMIQQIGPKLDGKIPVSRGFPIAEVFTLKPLEFGKPNTLVCFVSNLFPPMLTV 133
Query: 662 TWSYRGEEI-GVGSSD 676
W + + G G +
Sbjct: 134 NWQHHSVPVEGFGPTF 149
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA
repair, exonuclease, endonuclease; HET: BCN DIO GOL;
1.50A {Neisseria meningitidis}
Length = 259
Score = 30.6 bits (70), Expect = 2.0
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 663 WSYRGE--EIGVGSSDDYSVLEDPLKEGIKSTLIIRESRH-DH 702
WS RG+ VG DY ++ L S + ++ + DH
Sbjct: 205 WSNRGQAYAKDVGWRIDYQMVTPELAAKAVSAHVYKDEKFSDH 247
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 29.5 bits (66), Expect = 2.0
Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 12/91 (13%)
Query: 34 PQDQTAVVGSRVTLPCR----VIDKTGVLQWTKDDFALGPH--------RNLSGFDRYAM 81
P++ +V G+ V++ C +++ W + G + R +
Sbjct: 7 PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANL 66
Query: 82 IGSDEEGDYSLEIYPVMLDDDARYQCQVSTG 112
E G + + I + DD RY+C +
Sbjct: 67 TNFPENGTFVVNIAQLSQDDSGRYKCGLGIN 97
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 30.7 bits (69), Expect = 2.1
Identities = 30/186 (16%), Positives = 48/186 (25%), Gaps = 12/186 (6%)
Query: 37 QTAVVGSRVTLPCRV----IDKTGV-LQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYS 91
G + C V + V W DD S
Sbjct: 27 DVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDD---VEVHTAQTHAPEKQSNSTLRSVSE 83
Query: 92 LEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREI 151
L I + ++C+V++G P +S + P P ++
Sbjct: 84 LPIVERDWLNGKTFKCKVNSGAFPAPIEKS--ISKPEGTPRGPQVYTMAPPKEEMTQSQV 141
Query: 152 ELECISANGKPPA-EITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTT 210
+ C+ PP W G N + T + S L + + T
Sbjct: 142 SITCMVKGFYPPDIYTEWKMN-GQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNT 200
Query: 211 FTCQAQ 216
FTC
Sbjct: 201 FTCSVL 206
Score = 29.9 bits (67), Expect = 3.5
Identities = 20/125 (16%), Positives = 37/125 (29%), Gaps = 5/125 (4%)
Query: 157 SANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQA 215
+ P +W D + E+ S S L + + + TF C+
Sbjct: 44 ISQNDPEVRFSWFIDDVEVHTAQTHAPEKQS--NSTLRSVSELPIVERDWLNGKTFKCKV 101
Query: 216 QNTADRTYKVARLKLLVKYAPKVQVSVIG-SNRLVEGTDVRLYCKAEA-NPSHMKYRWYI 273
+ A + QV + + + V + C + P + W +
Sbjct: 102 NSGAFPAPIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKM 161
Query: 274 NDQPV 278
N QP
Sbjct: 162 NGQPQ 166
>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine
deaminase, ferredoxin-like domain; 2.40A {Methanopyrus
kandleri}
Length = 278
Score = 30.8 bits (69), Expect = 2.1
Identities = 34/144 (23%), Positives = 48/144 (33%), Gaps = 24/144 (16%)
Query: 513 GEEIGVGSSDDYSVHNDVGKSEDSE--TLDVTYGPRFRARPYSVQVD----------RGA 560
GE + V +DD + + D E + VT P + RG
Sbjct: 32 GEIVAVEEADDEHAERKLVRRHDVEGKVVFVTARPCLYCARELAEAGVAGVVYLGRGRGL 91
Query: 561 GVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMT--------SDDLAGRYYCKASV 612
G L E+ +H D L +L+T +D+A R YC +
Sbjct: 92 GPYYL----ARSGVEVVEVHPDEPLGYDPVDRLDVLLTFGGNPYLTEEDVAARVYCLLTG 147
Query: 613 MGFPEVGAEATVYLKGRPTIISHR 636
GF A A L GR I+ R
Sbjct: 148 RGFDADIAPAPENLSGRVEIMVTR 171
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like
domain, immunoglobulin-like, immune system receptor;
HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Length = 127
Score = 29.4 bits (66), Expect = 2.7
Identities = 12/110 (10%), Positives = 29/110 (26%), Gaps = 15/110 (13%)
Query: 33 EPQDQTAVVGSRVTLPCRVIDKT--------------GVLQWTKDDFALGPHRNLSGFDR 78
+ G + + C + + + + + R
Sbjct: 10 TEEKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGR 69
Query: 79 YAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
+ + G + + + ++D YQC + EP + L V
Sbjct: 70 IILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQP-PKEPHMLFDRIRLVV 118
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell
surface receptor, triggering receptor, platelet
receptor, ITIM, immune system; 1.19A {Homo sapiens}
Length = 106
Score = 28.7 bits (64), Expect = 3.1
Identities = 22/102 (21%), Positives = 32/102 (31%), Gaps = 11/102 (10%)
Query: 38 TAVVGSRVTLPCRV--IDKTGVLQWTKDDFALGPHRNLSGFD------RYAMIGSDEEGD 89
A VGS + + C D W + S D R + G
Sbjct: 8 QAPVGSSILVQCHYRLQDVKAQKVWCRFLPEGCQPLVSSAVDRRAPAGRRTFLTDLGGGL 67
Query: 90 YSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVP 131
+E+ + +D Y C V P I R +L +L P
Sbjct: 68 LQVEMVTLQEEDAGEYGCMVDGA--RGPQILHRV-SLNILPP 106
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold,
diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Length = 238
Score = 30.1 bits (68), Expect = 3.1
Identities = 18/88 (20%), Positives = 24/88 (27%), Gaps = 9/88 (10%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKT-GVLQWTKDDFALGPH--------RNLSGFDRYAMIGS 84
PQ T G L C + W + GP + R+ + +
Sbjct: 134 PQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFN 193
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTG 112
E SL I D A Y C
Sbjct: 194 KREKKLSLHIADSQPGDSATYFCAAIDT 221
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 30.6 bits (68), Expect = 3.1
Identities = 12/59 (20%), Positives = 18/59 (30%)
Query: 911 SSNSVDPRYSATYGNPYLRQSPNLPPPHTGQPPPPPYSSVRNGALPQATRLPSSPTSQF 969
S ++ Y R P PPP P P S+ + +SP +
Sbjct: 10 SDSNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPS 68
>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2,
immune system; 2.10A {Orectolobus maculatus}
Length = 108
Score = 28.8 bits (65), Expect = 3.2
Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 3/99 (3%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKT---GVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDY 90
P+ T G +T+ C + D W + + +S RY+ +
Sbjct: 7 PRIATKETGESLTINCVLRDTACALDSTNWYRTKLGSTKEQTISIGGRYSETVDEGSNSA 66
Query: 91 SLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVL 129
SL I + ++D Y+C+ + + TVL
Sbjct: 67 SLTIRDLRVEDSGTYKCKAYRRCAFNTGVGYKEGAGTVL 105
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 79
Score = 28.0 bits (62), Expect = 3.4
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 7/60 (11%)
Query: 399 SVQVDRGAG-VNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS 457
+ ++ V + C+ ITW+ ++ + L L D G Y C +
Sbjct: 2 KIPIEELEDRVFVNCNT------SITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCNGT 55
Score = 28.0 bits (62), Expect = 3.4
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 7/60 (11%)
Query: 553 SVQVDRGAG-VNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS 611
+ ++ V + C+ ITW+ ++ + L L D G Y C +
Sbjct: 2 KIPIEELEDRVFVNCNT------SITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCNGT 55
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1
type, retrotransposition, retrotransposon, transferase;
1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Length = 238
Score = 29.8 bits (68), Expect = 3.6
Identities = 11/40 (27%), Positives = 13/40 (32%), Gaps = 3/40 (7%)
Query: 663 WSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
+S S D+ V L K T II DH
Sbjct: 194 FSAPH---HTYSKIDHIVGSKALLSKCKRTEIITNYLSDH 230
>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane
receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A
3tfk_C 1j8h_D* 1fyt_D* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A*
2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B
3e3q_D
Length = 226
Score = 30.0 bits (67), Expect = 3.6
Identities = 34/199 (17%), Positives = 62/199 (31%), Gaps = 24/199 (12%)
Query: 34 PQDQTAVVGSRVTLPCRV-IDKTGVLQWTKDDFALGP---------HRNLSGFDRYAMIG 83
T G+ + L C+ T L W G + G + +
Sbjct: 16 DARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQMLLKYYSGDPVVQGVNGFEAEF 75
Query: 84 SDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV--LVPPDPPRIVQGD 141
S + + L V D A Y C VS G + A LTV + P + Q
Sbjct: 76 SKSDSSFHLRKASVHWSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPNIQNPDPAVYQ-- 133
Query: 142 TLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLT 201
L ++ + + C+ + ++ + +++ V + S+D + ++ V
Sbjct: 134 -LRDSKSSDKSV-CLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKS----NSAVAW 187
Query: 202 PKKEHHNTTFTCQAQNTAD 220
K F C
Sbjct: 188 SNKSD----FACANAFNNS 202
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 30.5 bits (67), Expect = 3.7
Identities = 15/108 (13%), Positives = 29/108 (26%), Gaps = 14/108 (12%)
Query: 408 VNLLCDVDGNPAPEITWIHED-------SDKVVGNSPNLTLLMTSDDLAGRYYCKASVMG 460
L C N A + W ++ + NL + S+ +G Y C +
Sbjct: 551 AELKCSQKSNLA-RVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERV 609
Query: 461 FPE------VGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIP 502
+ V + +P + + G + S
Sbjct: 610 KNKTVFQVVAKHVLEVKVVPKPVVAPTLSVVQTEGSRIATKVLVASTK 657
Score = 30.5 bits (67), Expect = 3.7
Identities = 15/108 (13%), Positives = 29/108 (26%), Gaps = 14/108 (12%)
Query: 562 VNLLCDVDGNPAPEITWIHED-------SDKVVGNSPNLTLLMTSDDLAGRYYCKASVMG 614
L C N A + W ++ + NL + S+ +G Y C +
Sbjct: 551 AELKCSQKSNLA-RVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERV 609
Query: 615 FPE------VGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIP 656
+ V + +P + + G + S
Sbjct: 610 KNKTVFQVVAKHVLEVKVVPKPVVAPTLSVVQTEGSRIATKVLVASTK 657
Score = 29.7 bits (65), Expect = 6.3
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 10/74 (13%)
Query: 635 HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLI 694
+R F G TA ++CS S +V W ++ + S Y ++ L+
Sbjct: 540 YRQHFFKHGGTAELKCSQKS--NLARVFWKFQNGVL-KAESPKYGLMGR-------KNLL 589
Query: 695 IRESRHDHFGVYNC 708
I GVY C
Sbjct: 590 IFNLSEGDSGVYQC 603
>3e0e_A Replication protein A; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 1.60A {Methanococcus maripaludis} PDB:
2k5v_A
Length = 97
Score = 28.0 bits (62), Expect = 4.5
Identities = 8/87 (9%), Positives = 29/87 (33%), Gaps = 12/87 (13%)
Query: 42 GSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDD 101
T+ V+ ++++ D G ++ + D+ G + ++
Sbjct: 11 NLSGTINAEVVTAYPKKEFSRKDGTKGQLKS--------LFLKDDTGSIRG----TLWNE 58
Query: 102 DARYQCQVSTGILGEPAIRSRFATLTV 128
A ++ + ++ ++ L +
Sbjct: 59 LADFEVKKGDIAEVSGYVKQGYSGLEI 85
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 28.4 bits (63), Expect = 4.6
Identities = 15/105 (14%), Positives = 32/105 (30%), Gaps = 12/105 (11%)
Query: 34 PQDQTAVVGSRVTLPCRV--IDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDE----- 86
++G VT P + + ++ WT S +
Sbjct: 6 IFTVNGILGESVTFPVNIQEPRQVKIIAWTSKTSVAYVTPGDSETAPVVTVTHRNYYERI 65
Query: 87 ---EGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
+Y+L I + ++D Y+ ++T R+ L +
Sbjct: 66 HALGPNYNLVISDLRMEDAGDYKADINTQADPYT-TTKRY-NLQI 108
>3qjh_A 5C.C7 alpha chain; immunoglobulin domain, T cell receptor, immune
system; 1.90A {Mus musculus} PDB: 3qiu_C* 3qiw_C* 3qjf_A
3qib_C 2ial_A 2iam_C 2ian_D 3rug_E* 3axl_A
Length = 205
Score = 29.3 bits (65), Expect = 4.6
Identities = 30/190 (15%), Positives = 54/190 (28%), Gaps = 19/190 (10%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPH---RNLSGF---DRYAMIGSDEE 87
P + G+ L C +QW + + SG R +E
Sbjct: 10 PSALSLHEGTGSALRCNFTTTMRAVQWFRKNSRGSLINLFYLASGTKENGRLKSAFDSKE 69
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTE 147
+L I L+D Y C + + V P+
Sbjct: 70 RYSTLHIRDAQLEDSGTYFCAAEASNTNKVVF---GTGTRLQVLPNIQNPDPAVYQLRDS 126
Query: 148 DREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKS-TLVLTPKKEH 206
+ C+ + ++ + S+V +T++ +D R KS + V K
Sbjct: 127 KSSDKSVCLFTDFDSQTNVSQ-----SKDSDVYITDKCVLDMRSMDFKSNSAVAWSNK-- 179
Query: 207 HNTTFTCQAQ 216
+ F C
Sbjct: 180 --SDFACANA 187
>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D
3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A
Length = 206
Score = 29.6 bits (66), Expect = 4.6
Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 8/87 (9%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTGV--LQWTKDDFALGPHRNLSGFDRYA------MIGSD 85
P + V LPC +G + W + + GP + G + ++
Sbjct: 6 PNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAE 65
Query: 86 EEGDYSLEIYPVMLDDDARYQCQVSTG 112
+ +L ++ L D A Y C +
Sbjct: 66 DRKSSTLILHRATLRDAAVYYCILPLA 92
>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response,
immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1
PDB: 1h5b_C 1h5b_B
Length = 113
Score = 28.4 bits (64), Expect = 5.0
Identities = 16/86 (18%), Positives = 25/86 (29%), Gaps = 7/86 (8%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGP---HRNLSGFD---RY-AMIGSDE 86
P + G+ L C +QW + + SG R + S+
Sbjct: 8 PSALSLHEGTDSALRCNFTTTMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSER 67
Query: 87 EGDYSLEIYPVMLDDDARYQCQVSTG 112
+L I L+D Y C
Sbjct: 68 ARYSTLHIRDAQLEDSGTYFCAAEAS 93
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral
virus, virus-immune SYST complex; 30.00A {Mus musculus}
SCOP: i.6.1.1
Length = 438
Score = 29.9 bits (68), Expect = 5.1
Identities = 22/108 (20%), Positives = 36/108 (33%), Gaps = 22/108 (20%)
Query: 163 PAEITWIDGTGTVMSNVR--VTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTAD 220
+ W + V T++ S D + STL LT + + ++TC+A +
Sbjct: 147 DINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMS-STLTLTKDEYERHNSYTCEATHKTS 205
Query: 221 RTYKVARLKLLVKYAPKVQVSVIGSNRLVE--------GTDVRLYCKA 260
+ V K LVE G ++L C A
Sbjct: 206 TSPIV-----------KSFNRNECEVMLVESGGGLVKPGGSLKLSCTA 242
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC
complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A
{Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A*
3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A*
3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A*
2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Length = 207
Score = 29.1 bits (65), Expect = 5.5
Identities = 30/194 (15%), Positives = 53/194 (27%), Gaps = 30/194 (15%)
Query: 37 QTAVVGSRVTLPCRV----IDKTGV-LQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYS 91
T ++ + C V + V W D N R S
Sbjct: 13 DTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDG---VEVHNAKTKPREEQYNSTYRVVSV 69
Query: 92 LEIYPVMLDDDARYQCQVS--------TGILGEPAIRSRFATLTVLVPPDPPRIVQGDTL 143
L + + Y+C+VS + + + R + L P
Sbjct: 70 LTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDE-------- 121
Query: 144 YTTEDREIELECISANGKPPAEI--TWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLT 201
++ L C+ G P++I W G +N + T + S L +
Sbjct: 122 --LTKNQVSLTCL-VKGFYPSDIAVEWESN-GQPENNYKTTPPVLDSDGSFFLYSKLTVD 177
Query: 202 PKKEHHNTTFTCQA 215
+ F+C
Sbjct: 178 KSRWQQGNVFSCSV 191
Score = 28.3 bits (63), Expect = 9.8
Identities = 22/124 (17%), Positives = 38/124 (30%), Gaps = 3/124 (2%)
Query: 157 SANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQ 216
++ P + W V + E + V S L + + + + C+
Sbjct: 30 VSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNST-YRVVSVLTVLHQDWLNGKEYKCKVS 88
Query: 217 NTADRTYKVARLKLLVKYAPKVQVSVIG-SNRLVEGTDVRLYCKAEA-NPSHMKYRWYIN 274
N A + + QV + S + V L C + PS + W N
Sbjct: 89 NKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESN 148
Query: 275 DQPV 278
QP
Sbjct: 149 GQPE 152
>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo
sapiens} PDB: 2nx5_D 4dzb_A
Length = 200
Score = 29.1 bits (65), Expect = 5.8
Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 8/86 (9%)
Query: 34 PQDQTAVVGSRVTLPCR-VIDKTGVLQWTKDDFALGP-------HRNLSGFDRYAMIGSD 85
P + TA G+ V + C L W + P L R++ S
Sbjct: 6 PTEMTATEGAIVQINCTYQTSGFNGLFWYQQHAGEAPTFLSYNVLDGLEEKGRFSSFLSR 65
Query: 86 EEGDYSLEIYPVMLDDDARYQCQVST 111
+G L + + + D A Y C V
Sbjct: 66 SKGYSYLLLKELQMKDSASYLCAVQA 91
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune
system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L
2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L*
1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L*
1mfb_L* ...
Length = 212
Score = 29.2 bits (66), Expect = 6.0
Identities = 28/158 (17%), Positives = 55/158 (34%), Gaps = 29/158 (18%)
Query: 74 SGF-DRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTG------------ILGEPAIR 120
G R++ GS +L I +D+A Y C + + +LG+P
Sbjct: 58 PGVPARFS--GSLIGDKAALTITGAQTEDEAIYFCALWSNNKLVFGGGTKLTVLGQPK-- 113
Query: 121 SRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPP-AEITWIDGTGTVMSNV 179
++ TV + P + L C + P + W V + +
Sbjct: 114 ---SSPTVTLFPPSSEELSTAK--------ATLVCTITDFYPGVVTVDWKVDGTPVTAGM 162
Query: 180 RVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQN 217
T+ + + S L LT + +++++CQ +
Sbjct: 163 ETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTH 200
>2oi9_C V beta, T cell receptor beta chain; TCR, MHC, immune system; 2.35A
{Mus musculus} PDB: 2e7l_C
Length = 121
Score = 27.9 bits (63), Expect = 6.4
Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 14/91 (15%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPH----------RNLSGF-DRYAMI 82
P+++ AV G +VTL C + + W + D D Y
Sbjct: 8 PRNKVAVTGEKVTLSCNQTNNHNNMYWYRQDTGHELRLIYYSYGAGSTEKGDIPDGYK-- 65
Query: 83 GSDEEG-DYSLEIYPVMLDDDARYQCQVSTG 112
S ++SL + + Y C G
Sbjct: 66 ASRPSQENFSLTLESATPSQTSVYFCASGGG 96
>2jjs_C Leukocyte surface antigen CD47; signal regulatory protein alpha,
immunoglobulin superfamily, transmembrane,
phosphoprotein, paired receptor; HET: NAG; 1.85A {Homo
sapiens} PDB: 2jjt_C* 2vsc_A*
Length = 127
Score = 28.3 bits (62), Expect = 7.0
Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 11/76 (14%)
Query: 661 VTWSYRGEEIGV--GSSDDYSVLED---------PLKEGIKSTLIIRESRHDHFGVYNCS 709
V W ++G +I G+ + +V D L +G S + + H G Y C
Sbjct: 38 VKWKFKGRDIYTFDGALNKSTVPTDFSSAKIEVSQLLKGDASLKMDKSDAVSHTGNYTCE 97
Query: 710 VSNPYGSDSVEIMLKP 725
V+ I LK
Sbjct: 98 VTELTREGETIIELKY 113
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 29.2 bits (64), Expect = 7.6
Identities = 13/93 (13%), Positives = 25/93 (26%), Gaps = 12/93 (12%)
Query: 635 HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLI 694
+ P + C S +W ++ +P + L
Sbjct: 507 LQKVSLAPNSRYYLSCPMES--RHATYSWRHKENVEQSC---------EPGHQSPNCILF 555
Query: 695 IRESRHDHFGVYNC-SVSNPYGSDSVEIMLKPQ 726
I +G Y C + Y ++ L P+
Sbjct: 556 IENLTAQQYGHYFCEAQEGSYFREAQHWQLLPE 588
>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus
musculus} PDB: 3c60_A
Length = 200
Score = 28.4 bits (63), Expect = 8.1
Identities = 25/192 (13%), Positives = 51/192 (26%), Gaps = 22/192 (11%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTGV-LQWTKDDFALGPHRNLSGF--------DRYAMIGS 84
T + + C L W GP L +
Sbjct: 7 QGQVTLSENDFLFINCTYSTTGYPTLFWYVQYSGEGPQLLLQVTTANNKGSSRGFEATYD 66
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLY 144
+ L+ V D A Y C ++G ++ + + PDP
Sbjct: 67 KGTTSFHLQKTSVQEIDSAVYYCAANSGTYQRFGTGTKLQVVPNIQNPDP-----AVYQL 121
Query: 145 TTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKK 204
+ C+ + ++ + +++ V + S+D + ++ V K
Sbjct: 122 RDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKS----NSAVAWSNK 177
Query: 205 EHHNTTFTCQAQ 216
+ F C
Sbjct: 178 ----SDFACANA 185
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus,
PP65, T cell receptor (TCR), immune response, public
response; 2.80A {Homo sapiens}
Length = 199
Score = 28.7 bits (64), Expect = 8.4
Identities = 19/88 (21%), Positives = 26/88 (29%), Gaps = 9/88 (10%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTGV-LQWTKDDFALGPHRNLSGF--------DRYAMIGS 84
PQ G C L W + + A P R + +
Sbjct: 7 PQSLHVQEGDSTNFTCSFPSSNFYALHWYRWETAKSPEALFVMTLNGDEKKKGRISATLN 66
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTG 112
+EG L I +D A Y C +TG
Sbjct: 67 TKEGYSYLYIKGSQPEDSATYLCARNTG 94
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor
complex LIFR LIF, cytokine RE cytokine complex; HET: NAG
FUC MAN; 4.00A {Mus musculus}
Length = 488
Score = 29.2 bits (64), Expect = 8.5
Identities = 33/238 (13%), Positives = 58/238 (24%), Gaps = 53/238 (22%)
Query: 27 EQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDE 86
+ + PQD+ + GS +T+ C K Q L +
Sbjct: 203 NTETNVFPQDKVVLAGSNMTICCMSPTKVLSGQIGNTLRPLIHL-------------YGQ 249
Query: 87 EGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTT 146
+ PV + + G + PPD P+ +
Sbjct: 250 TVAIHILNIPVSENSGTNIIFITDDDVYG--------TVVFAGYPPDVPQKLS------- 294
Query: 147 EDREIELECISANGKPPAEITWIDGTGTVMSNVRVT------------EEASVDGRRTTV 194
C + + +W G T + R T T
Sbjct: 295 --------CET-HDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAVFHRIEGLTNE 345
Query: 195 KSTLVLTPKKEHHNTTFTCQAQNTA--DRTYKVARLKLLVKYAP--KVQVSVIGSNRL 248
L + FT +N ++ V + V ++V I S +
Sbjct: 346 TYRLGVQMHPGQEIHNFTLTGRNPLGQAQSAVVINVTERVAPHDPTSLKVKDINSTVV 403
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 29.0 bits (64), Expect = 9.2
Identities = 29/243 (11%), Positives = 66/243 (27%), Gaps = 27/243 (11%)
Query: 81 MIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQG 140
I + GDY + I + G + V + PD P I+Q
Sbjct: 48 KIPALSHGDYEITINSLH--------------DFGSSTSKFTLNEQNVSLIPDTPEILQL 93
Query: 141 DTLYTTEDREIELECISANGKPPAEITW-IDGTGTVMSNVRVTEEASVDGRRTTVKSTLV 199
++T ++ + + + W I +
Sbjct: 94 SADFSTSTLYLKWNDRGSVFPHRSNVIWEIKVLRKESMELVKLVTHQTTLNGKDTLHHWS 153
Query: 200 LTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLV---------E 250
+ + D + L+ ++P Q+S I ++
Sbjct: 154 WASDMPLECAIHFVEIRCYID-NLHFSGLEEWSDWSPVKQISWIPDSQTKVFPQDKVILV 212
Query: 251 GTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQH-DSIVKCEVQVSV 309
G+D+ C ++ + N + + + NI+ + V + ++
Sbjct: 213 GSDITFCCVSQEKVLSALI-GHTNCPLIHLDGENVAIKIRNISVSASSGTNVVFTTEDNI 271
Query: 310 IGS 312
G+
Sbjct: 272 FGT 274
>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1;
beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus
musculus}
Length = 120
Score = 27.6 bits (62), Expect = 9.4
Identities = 16/86 (18%), Positives = 27/86 (31%), Gaps = 14/86 (16%)
Query: 34 PQDQTAVVGSRVTLPCRVID--KTGVLQWTKDDFALGPHRNL----SGFD-----RYAMI 82
+ + G L C + G ++W + G R L +G +
Sbjct: 14 EKSVSVAAGDSTVLNCTLTSLLPVGPIKWYRGV---GQSRLLIYSFTGEHFPRVTNVSDA 70
Query: 83 GSDEEGDYSLEIYPVMLDDDARYQCQ 108
D+S+ I V +D Y C
Sbjct: 71 TKRNNMDFSIRISNVTPEDAGTYYCV 96
>1cvr_A Gingipain R, RGPB; caspases, cysteine proteinase,
hydrolase-hydrolase inhibitor; HET: H37; 2.00A
{Porphyromonas gingivalis} SCOP: b.1.18.12 c.17.1.2
Length = 435
Score = 28.9 bits (63), Expect = 9.9
Identities = 17/139 (12%), Positives = 40/139 (28%), Gaps = 7/139 (5%)
Query: 55 TGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYS----LEIYPVMLDDDARYQCQVS 110
+ + Q+ N +++ G + + D +
Sbjct: 278 STIDQYWAPPMRGQDEMNEILCEKHPNNIKRTFGGVTMNGMFAMVEKYKKDGENMLDTWT 337
Query: 111 TGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTE-DREIELECISANGKPPAEITWI 169
+ G+P++ R T + P I + D + +S +G
Sbjct: 338 --VFGDPSLLVRTLVPTEMQVTAPANISASAQTFEVACDYNGAIATLSDDGDMVGTAIVK 395
Query: 170 DGTGTVMSNVRVTEEASVD 188
DG + N + +E ++
Sbjct: 396 DGKAIIKLNESIADETNLT 414
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.399
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 15,735,021
Number of extensions: 985665
Number of successful extensions: 6313
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3613
Number of HSP's successfully gapped: 1384
Length of query: 1011
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 908
Effective length of database: 3,825,930
Effective search space: 3473944440
Effective search space used: 3473944440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.1 bits)