BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17147
(291 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PJA|A Chain A, The Crystal Structure Of Palmitoyl Protein Thioesterase-2
Reveals The Basis For Divergent Substrate Specificities
Of The Two Lysosomal Thioesterases (Ppt1 And Ppt2)
Length = 302
Score = 184 bits (468), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 103/287 (35%), Positives = 154/287 (53%), Gaps = 21/287 (7%)
Query: 4 YRPVLVIHGILSGNKTLEKFKERIERFHPGTKVVIPDNYSNWASLEPMWNQVLFFGSLVM 63
Y+PV+V+HG+ + + E I HPGT V + D + SL P+W QV F V+
Sbjct: 36 YKPVIVVHGLFDSSYSFRHLLEYINETHPGTVVTVLDLFDGRESLRPLWEQVQGFREAVV 95
Query: 64 KMSQNHPEGIHLIGYSQGGLIARGILEQFPNHNVRNFISLSSPHGGQYGSNQFGHFTEDE 123
+ P+G+HLI YSQGGL+ R +L +HNV +FISLSSP GQYG + +
Sbjct: 96 PIMAKAPQGVHLICYSQGGLVCRALLSVMDDHNVDSFISLSSPQMGQYGDTDYLKW---- 151
Query: 124 SVVELRDTKMYTENSLGLRTLDKQGKLVLISVPGVDHFQWHNNPTVIDQHKSTFVCFSKF 183
L T M ++L G+ I WH+ H ++ S F
Sbjct: 152 ----LFPTSM--RSNLYRICYSPWGQEFSICN------YWHD-----PHHDDLYLNASSF 194
Query: 184 LPFINNLNATPNSNLFKLGLLRLHRMVLIGGPNDSVITPWQSSQFGHFTEDESVVELRDT 243
L IN PN+ +++ LR+ +VLIGGP+D VITPWQSS FG + +E+V+E+ +
Sbjct: 195 LALINGERDHPNATVWRKNFLRVGHLVLIGGPDDGVITPWQSSFFGFYDANETVLEMEEQ 254
Query: 244 KMYTKNSLGLRTLDKQGKLVLISVPGVDHFQWHNNPTVIDQHVLPYL 290
+Y ++S GL+TL +G +V + G+ H WH+N T+ + + P+L
Sbjct: 255 LVYLRDSFGLKTLLARGAIVRCPMAGISHTAWHSNRTLYETCIEPWL 301
>pdb|1EH5|A Chain A, Crystal Structure Of Palmitoyl Protein Thioesterase 1
Complexed With Palmitate
pdb|1EI9|A Chain A, Crystal Structure Of Palmitoyl Protein Thioesterase 1
pdb|1EXW|A Chain A, Crystal Structure Of Palmitoyl Protein Thioesterase 1
Complexed With Hexadecylsulfonyl Fluoride
Length = 279
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 107/223 (47%), Gaps = 25/223 (11%)
Query: 71 EGIHLIGYSQGGLIARGILEQFPNHNVRNFISLSSPHGGQYGSNQFGHFTEDESVVELRD 130
+G + +G+SQGG R + ++ P+ + N IS+ H G +G + E + +
Sbjct: 80 QGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGGQHQGVFGLPRCP--GESSHICD--- 134
Query: 131 TKMYTENSLGLRTLDKQGKLVLISVPGVDHFQWHNNPTVIDQHKSTFVCFSKFLPFINNL 190
+ +L +K + L+ WH+ P D +++ S FL IN
Sbjct: 135 ---FIRKTLNAGAYNKAIQERLVQAE-----YWHD-PIREDIYRN----HSIFLADINQE 181
Query: 191 NATPNSNLFKLGLLRLHRMVLIGGPNDSVITPWQSSQFGHFTEDES--VVELRDTKMYTK 248
S +K L+ L + V++ ND+++ P S FG + ++ + L+++ +YT+
Sbjct: 182 RGVNES--YKKNLMALKKFVMVKFLNDTIVDPVDSEWFGFYRSGQAKETIPLQESTLYTQ 239
Query: 249 NSLGLRTLDKQGKLVLISVPGVDHFQWHNNPTVIDQHVLPYLD 291
+ LGL+ +DK G+LV +++ G DH Q H++P+L+
Sbjct: 240 DRLGLKAMDKAGQLVFLALEG-DHLQLSEE--WFYAHIIPFLE 279
>pdb|3GRO|A Chain A, Human Palmitoyl-Protein Thioesterase 1
pdb|3GRO|B Chain B, Human Palmitoyl-Protein Thioesterase 1
Length = 298
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 25/222 (11%)
Query: 71 EGIHLIGYSQGGLIARGILEQFPNHNVRNFISLSSPHGGQYGSNQFGHFTEDESVVELRD 130
+G + G+SQGG R + ++ P+ N IS+ H G +G + ES + D
Sbjct: 87 QGYNAXGFSQGGQFLRAVAQRCPSPPXINLISVGGQHQGVFGLPR----CPGESS-HICD 141
Query: 131 TKMYTENSLGLRTLDKQGKLVLISVPGVDHFQWHNNPTVIDQHKSTFVCFSKFLPFINNL 190
T N+ G + Q +LV WH+ P D +++ S FL IN
Sbjct: 142 FIRKTLNA-GAYSKVVQERLVQAEY-------WHD-PIKEDVYRN----HSIFLADINQE 188
Query: 191 NATPNSNLFKLGLLRLHRMVLIGGPNDSVITPWQSSQFGHFTEDES--VVELRDTKMYTK 248
S +K L L + V + NDS++ P S FG + ++ + L++T +YT+
Sbjct: 189 RGINES--YKKNLXALKKFVXVKFLNDSIVDPVDSEWFGFYRSGQAKETIPLQETSLYTQ 246
Query: 249 NSLGLRTLDKQGKLVLISVPGVDHFQWHNNPTVIDQHVLPYL 290
+ LGL+ D G+LV ++ G DH Q H++P+L
Sbjct: 247 DRLGLKEXDNAGQLVFLATEG-DHLQLSEE--WFYAHIIPFL 285
>pdb|2ES4|A Chain A, Crystal Structure Of The Burkholderia Glumae Lipase-
Specific Foldase In Complex With Its Cognate Lipase
pdb|2ES4|B Chain B, Crystal Structure Of The Burkholderia Glumae Lipase-
Specific Foldase In Complex With Its Cognate Lipase
pdb|1CVL|A Chain A, Crystal Structure Of Bacterial Lipase From Chromobacterium
Viscosum Atcc 6918
Length = 319
Score = 34.7 bits (78), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 20/131 (15%)
Query: 1 MKRYRPVLVIHGILSGNKTLEKFKERIERFHP--------GTKVVIPDNYSNWASLE-PM 51
RY PV+++HG L+G +KF ++ ++ G KV + N S + S + P
Sbjct: 6 ATRY-PVILVHG-LAGT---DKFANVVDYWYGIQSDLQSHGAKVYVA-NLSGFQSDDGPN 59
Query: 52 WNQVLFFGSLVMKMSQNHPEGIHLIGYSQGGLIARGILEQFPNHNVRNFISLSSPHGGQY 111
+ ++ ++LIG+SQGGL +R + P V + ++ +PH G
Sbjct: 60 GRGEQLLAYVKQVLAATGATKVNLIGHSQGGLTSRYVAAVAPQL-VASVTTIGTPHRG-- 116
Query: 112 GSNQFGHFTED 122
++F F +D
Sbjct: 117 --SEFADFVQD 125
>pdb|1TAH|B Chain B, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|A Chain A, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|C Chain C, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|D Chain D, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
Length = 318
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 20/131 (15%)
Query: 1 MKRYRPVLVIHGILSGNKTLEKFKERIERFHP--------GTKVVIPDNYSNWASLE-PM 51
RY PV+++HG L+G +KF ++ ++ G KV + N S + S + P
Sbjct: 5 ATRY-PVILVHG-LAGT---DKFANVVDYWYGIQSDLQSHGAKVYVA-NLSGFQSDDGPN 58
Query: 52 WNQVLFFGSLVMKMSQNHPEGIHLIGYSQGGLIARGILEQFPNHNVRNFISLSSPHGGQY 111
+ ++ ++LIG+SQGGL +R + P V + ++ +PH G
Sbjct: 59 GRGEQLLAYVKQVLAATGATKVNLIGHSQGGLTSRYVAAVAPQL-VASVTTIGTPHRG-- 115
Query: 112 GSNQFGHFTED 122
++F F +D
Sbjct: 116 --SEFADFVQD 124
>pdb|1QGE|D Chain D, New Crystal Form Of Pseudomonas Glumae (Formerly
Chromobacterium Viscosum Atcc 6918) Lipase
Length = 222
Score = 34.3 bits (77), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 20/131 (15%)
Query: 1 MKRYRPVLVIHGILSGNKTLEKFKERIERFHP--------GTKVVIPDNYSNWASLE-PM 51
RY PV+++HG L+G +KF ++ ++ G KV + N S + S + P
Sbjct: 6 ATRY-PVILVHG-LAGT---DKFANVVDYWYGIQSDLQSHGAKVYVA-NLSGFQSDDGPN 59
Query: 52 WNQVLFFGSLVMKMSQNHPEGIHLIGYSQGGLIARGILEQFPNHNVRNFISLSSPHGGQY 111
+ ++ ++LIG+SQGGL +R + P V + ++ +PH G
Sbjct: 60 GRGEQLLAYVKQVLAATGATKVNLIGHSQGGLTSRYVAAVAPQL-VASVTTIGTPHRG-- 116
Query: 112 GSNQFGHFTED 122
++F F +D
Sbjct: 117 --SEFADFVQD 125
>pdb|2XMZ|A Chain A, Structure Of Menh From S. Aureus
Length = 269
Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 11/129 (8%)
Query: 7 VLVIHGILSGNKTLEKFKERIERFHPGTKVV---IPDNYSNWASLEPMWNQVLFFGSLVM 63
++ +HG LS ++T + IE+F V+ +P + + +S++ WN L
Sbjct: 19 LVFLHGFLSDSRT---YHNHIEKFTDNYHVITIDLPGHGEDQSSMDETWNFDYITTLLDR 75
Query: 64 KMSQNHPEGIHLIGYSQGGLIA--RGILEQFPNHNVRNFISLSSPHGGQYGSNQFGHFTE 121
+ + + I L GYS GG +A I P + N I S+ G + +NQ
Sbjct: 76 ILDKYKDKSITLFGYSMGGRVALYYAINGHIP---ISNLILESTSPGIKEEANQLERRLV 132
Query: 122 DESVVELRD 130
D++ ++ D
Sbjct: 133 DDARAKVLD 141
>pdb|3E0X|A Chain A, The Crystal Structure Of A Lipase-Esterase Related Protein
From Clostridium Acetobutylicum Atcc 824
pdb|3E0X|B Chain B, The Crystal Structure Of A Lipase-Esterase Related Protein
From Clostridium Acetobutylicum Atcc 824
Length = 245
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 69 HPEGIHLIGYSQGGLIARGI-LEQFPNHNVRNFISLS 104
H + I LIGYS GG I G+ L++ P NVR +SLS
Sbjct: 82 HQKNITLIGYSXGGAIVLGVALKKLP--NVRKVVSLS 116
>pdb|1OIL|A Chain A, Structure Of Lipase
pdb|1OIL|B Chain B, Structure Of Lipase
pdb|4LIP|D Chain D, Pseudomonas Lipase Complexed With Rc-(rp, Sp)-
Dibutylcarbamoylglycero-3-o-butylphosphonate
pdb|4LIP|E Chain E, Pseudomonas Lipase Complexed With Rc-(rp, Sp)-
Dibutylcarbamoylglycero-3-o-butylphosphonate
pdb|1HQD|A Chain A, Pseudomonas Cepacia Lipase Complexed With Transition State
Analogue Of 1-Phenoxy-2-Acetoxy Butane
pdb|2LIP|A Chain A, Pseudomonas Lipase Open Conformation
pdb|3LIP|A Chain A, Open Conformation Of Pseudomonas Cepacia Lipase
pdb|5LIP|A Chain A, Pseudomonas Lipase Complexed With Rc-(Rp, Sp)-1,2-
Dioctylcarbamoylglycero-3-O-Octylphosphonate
pdb|2NW6|A Chain A, Burkholderia Cepacia Lipase Complexed With S-Inhibitor
Length = 320
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 10/125 (8%)
Query: 1 MKRYRPVLVIHGILSGNK---TLEKFKERIERFHPGTKVVIPDNYSNWASLE-PMWNQVL 56
RY P++++HG+ +K LE + E V N S + S + P
Sbjct: 6 ATRY-PIILVHGLTGTDKYAGVLEYWYGIQEDLQQRGATVYVANLSGFQSDDGPNGRGEQ 64
Query: 57 FFGSLVMKMSQNHPEGIHLIGYSQGGLIARGILEQFPNHNVRNFISLSSPHGGQYGSNQF 116
+ ++ ++L+G+SQGGL +R + P+ V + ++ +PH G ++F
Sbjct: 65 LLAYVKTVLAATGATKVNLVGHSQGGLTSRYVAAVAPDL-VASVTTIGTPHRG----SEF 119
Query: 117 GHFTE 121
F +
Sbjct: 120 ADFVQ 124
>pdb|1YS1|X Chain X, Burkholderia Cepacia Lipase Complexed With Hexylphosphonic
Acid (R)-2-Methyl-3-Phenylpropyl Ester
pdb|1YS2|X Chain X, Burkholderia Cepacia Lipase Complexed With Hexylphosphonic
Acid (s) 2-methyl-3-phenylpropyl Ester
Length = 320
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 10/125 (8%)
Query: 1 MKRYRPVLVIHGILSGNK---TLEKFKERIERFHPGTKVVIPDNYSNWASLE-PMWNQVL 56
RY P++++HG+ +K LE + E V N S + S + P
Sbjct: 6 ATRY-PIILVHGLTGTDKYAGVLEYWYGIQEDLQQRGATVYVANLSGFQSDDGPNGRGEQ 64
Query: 57 FFGSLVMKMSQNHPEGIHLIGYSQGGLIARGILEQFPNHNVRNFISLSSPHGGQYGSNQF 116
+ ++ ++L+G+SQGGL +R + P+ V + ++ +PH G ++F
Sbjct: 65 LLAYVKTVLAATGATKVNLVGHSQGGLTSRYVAAVAPDL-VASVTTIGTPHRG----SEF 119
Query: 117 GHFTE 121
F +
Sbjct: 120 ADFVQ 124
>pdb|3C5V|A Chain A, Pp2a-Specific Methylesterase Apo Form (Pme)
Length = 316
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 29 RFHPGTKVVIPDNYSNWASLEPMWNQVLFFGSLVMKMSQNHPEGIHLIGYSQGGLIA 85
R H TKV P++ S E M V G++V M + P I LIG+S GG IA
Sbjct: 75 RSHGETKVKNPEDLSA----ETMAKDV---GNVVEAMYGDLPPPIMLIGHSMGGAIA 124
>pdb|3CTP|A Chain A, Crystal Structure Of Periplasmic Binding ProteinLACI
TRANSCRIPTIONAL Regulator From Alkaliphilus
Metalliredigens Qymf Complexed With D- Xylulofuranose
pdb|3CTP|B Chain B, Crystal Structure Of Periplasmic Binding ProteinLACI
TRANSCRIPTIONAL Regulator From Alkaliphilus
Metalliredigens Qymf Complexed With D- Xylulofuranose
Length = 330
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 114 NQFGHFTED--ESVVELRDTKMYTENSLGLRTLDKQGKLVLISVPGVDHFQWHNNPTVID 171
N G+ +ED E + ++ D YT N+L K K + + VP + + ++ +VI+
Sbjct: 24 NNTGYVSEDAREKIQKVVDELNYTPNALARAMFTKNSKTIGLMVPNISNPFFNQMASVIE 83
Query: 172 QHKSTFVCFSKFLPFINNLNATPNSNLFKLGLLRLHRMV 210
++ + F+ N + L +L+ HR+
Sbjct: 84 EYAKN----KGYTLFLCNTDDDKEKEKTYLEVLQSHRVA 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,589,748
Number of Sequences: 62578
Number of extensions: 411544
Number of successful extensions: 924
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 911
Number of HSP's gapped (non-prelim): 20
length of query: 291
length of database: 14,973,337
effective HSP length: 98
effective length of query: 193
effective length of database: 8,840,693
effective search space: 1706253749
effective search space used: 1706253749
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)