RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17147
(291 letters)
>gnl|CDD|178240 PLN02633, PLN02633, palmitoyl protein thioesterase family protein.
Length = 314
Score = 90.3 bits (224), Expect = 6e-21
Identities = 80/296 (27%), Positives = 139/296 (46%), Gaps = 39/296 (13%)
Query: 6 PVLVIHGILS--GNKTLEKFKERIERFH--PGTKVVIPDNYSNWASLEPMWNQVLFFGSL 61
P +++HGI + + T F + + PG + I + + + L P+ Q
Sbjct: 27 PFIMLHGIGTQCSDATNANFTQLLTNLSGSPGFCLEIGNGVGD-SWLMPLTQQAEIACEK 85
Query: 62 VMKMSQNHPEGIHLIGYSQGGLIARGILEQFPNHN--VRNFISLSSPHGGQYGSNQFGHF 119
V +M + +G +++G SQG L+ARG++E F + V N+ISL+ PH G
Sbjct: 86 VKQMKE-LSQGYNIVGRSQGNLVARGLIE-FCDGGPPVYNYISLAGPHAG---------- 133
Query: 120 TEDESVVELRDTKMYTENSLGLRTLDKQGKLVLISVPGVDHFQ---WHNNPTVIDQHKST 176
+ + L + ++ K + S DH ++ P + ++
Sbjct: 134 --------ISSLPRCGTSGLICKIANELIKGDVYSDFIQDHLAPSGYYKIPKDVTEYLKG 185
Query: 177 FVCFSKFLPFINNLNATPNSNLFKLGLLRLHRMVLIGGPNDSVITPWQSSQFGHFTEDE- 235
SK+LP +NN + +K L +VL+ ND+VI P SS FG + + E
Sbjct: 186 ----SKYLPKLNNEIPDQRNQTYKDRFTSLQNLVLVKFQNDTVIVPKDSSWFGFYPDGEF 241
Query: 236 -SVVELRDTKMYTKNSLGLRTLDKQGKLVLISVPGVDHFQWHNNPTVIDQHVLPYL 290
++ ++ TK+YT++ +GL+TLD GK+ +SVPG H + V ++V+PYL
Sbjct: 242 EHLLSVQQTKLYTEDWIGLKTLDDAGKVKFVSVPG-GHLIMADEDVV--KYVVPYL 294
>gnl|CDD|215326 PLN02606, PLN02606, palmitoyl-protein thioesterase.
Length = 306
Score = 84.3 bits (208), Expect = 8e-19
Identities = 68/226 (30%), Positives = 108/226 (47%), Gaps = 33/226 (14%)
Query: 71 EGIHLIGYSQGGLIARGILEQFPNHN-VRNFISLSSPHGGQYGSNQFGHFTEDESVVELR 129
EG +++ SQG L+ARG++E N V N++SL PH G + + T E +++
Sbjct: 95 EGYNIVAESQGNLVARGLIEFCDNAPPVINYVSLGGPHAGVAAIPKGCNSTFCE-LLKAV 153
Query: 130 DTKMYTENSLGLRTLDKQGKLVLISVPGVDHFQWHNNPT---VIDQHKSTFVCFSKFLPF 186
+YT D Q H P+ ++ SK+LP
Sbjct: 154 FAVIYT-----------------------DFAQDHTAPSGYVKKPMEIKNYLEHSKYLPK 190
Query: 187 INNLNATPNSNLFKLGLLRLHRMVLIGGPNDSVITPWQSSQFGHFTEDESVVEL--RDTK 244
+NN + FK LH +VL+ D+V+ P ++S FG++ + S L + TK
Sbjct: 191 LNNERPGERNPTFKDRFTSLHNLVLVMFQGDTVLIPRETSWFGYYPDGASTPLLSPQSTK 250
Query: 245 MYTKNSLGLRTLDKQGKLVLISVPGVDHFQWHNNPTVIDQHVLPYL 290
+YT++ +GL+TLD GK+ ISVPG H + V ++V+PYL
Sbjct: 251 LYTEDWIGLKTLDDAGKVKFISVPG-GHIEIAEEDLV--KYVVPYL 293
>gnl|CDD|202109 pfam02089, Palm_thioest, Palmitoyl protein thioesterase.
Length = 279
Score = 70.1 bits (171), Expect = 5e-14
Identities = 56/226 (24%), Positives = 103/226 (45%), Gaps = 33/226 (14%)
Query: 71 EGIHLIGYSQGGLIARGILEQFPNHNVRNFISLSSPHGGQYG----SNQFGHFTEDESVV 126
+G + +G+SQGG R + ++ P+ + N IS+ H G +G + H +
Sbjct: 80 QGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGGQHQGVFGLPRCPGESSHICD----- 134
Query: 127 ELRDTKMYTENSLGLRTLDKQGKLVLISVPGVDHFQWHNNPTVIDQHKSTFVCFSKFLPF 186
+ +L +K I V WH+ P + + S FL
Sbjct: 135 -------FIRKTLNAGAYNK-----AIQERLVQAEYWHD-PI----REDIYRNHSIFLAD 177
Query: 187 INNLNATPNSNLFKLGLLRLHRMVLIGGPNDSVITPWQSSQFGHFTEDES--VVELRDTK 244
IN S +K L+ L + V++ ND+++ P S FG + ++ + L+++
Sbjct: 178 INQERGVNES--YKKNLMALKKFVMVKFLNDTIVDPVDSEWFGFYRSGQAKETIPLQEST 235
Query: 245 MYTKNSLGLRTLDKQGKLVLISVPGVDHFQWHNNPTVIDQHVLPYL 290
+YT++ LGL+ +DK G+LV +++ G DH Q + H++P+L
Sbjct: 236 LYTQDRLGLKAMDKAGQLVFLALEG-DHLQL--SEEWFYAHIIPFL 278
>gnl|CDD|223669 COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta
hydrolase superfamily) [General function prediction
only].
Length = 282
Score = 52.7 bits (125), Expect = 5e-08
Identities = 41/287 (14%), Positives = 86/287 (29%), Gaps = 28/287 (9%)
Query: 5 RPVLVIHGILSGNKTLEKFKERIERFHPGTKVVIPDNYSNWASLEPMWNQVLFFGSLVMK 64
P++++HG + + + +V+ PD + S ++ + L
Sbjct: 22 PPLVLLHGFPGSSSVWRPVFKVLPALAARYRVIAPDLRGHGRSDPAGYSLSAYADDLAAL 81
Query: 65 MSQNHPEGIHLIGYSQGGLIARGILEQFPNHNVRNFISLSSPHGGQYGSNQFGHFTEDES 124
+ E + L+G+S GG +A + + P+ VR + +
Sbjct: 82 LDALGLEKVVLVGHSMGGAVALALALRHPDR-VRGLVLIGPAPPPGLLEAALRQPAGAAP 140
Query: 125 VVELRDTKMYTENSLGLRTLDKQGKLVLISVPGVDHFQWHNNPTVIDQHKSTFVCFSKFL 184
+ L D + + + L G L ++ + + +
Sbjct: 141 LAALADLLLGLDAAAFAALLAALGLLAALA-AAARAGLAEALRAPLLGAAAAAFARAARA 199
Query: 185 PFINNLNATPNSNLFKLGLLRLHRMVLIGGPNDSVITPWQSSQFGHFTEDESVVELRDTK 244
L A + +L ++I G +D V+ + +
Sbjct: 200 DLAAALLALLDRDLRAALARITVPTLIIHGEDDPVVPAELARRL---------------- 243
Query: 245 MYTKNSLGLRTLDKQGKLVLISVPGVDHFQWHNNPTVIDQHVLPYLD 291
L +LV+I PG HF P +L +L+
Sbjct: 244 --------AAALPNDARLVVI--PGAGHFPHLEAPEAFAAALLAFLE 280
>gnl|CDD|224001 COG1075, LipA, Predicted acetyltransferases and hydrolases with the
alpha/beta hydrolase fold [General function prediction
only].
Length = 336
Score = 48.3 bits (115), Expect = 2e-06
Identities = 36/192 (18%), Positives = 65/192 (33%), Gaps = 18/192 (9%)
Query: 5 RPVLVIHGILSGNKTLEKFKERIERFHPGTKVVIPDNYSNWASLEPMWNQVLFFGSLVMK 64
P++++HG+ G R+ T V S + + + V +
Sbjct: 60 EPIVLVHGLGGGYGNFLPLDYRLAILGWLTNGVYAFELSGGDGTYSLAVRGEQLFAYVDE 119
Query: 65 MSQNHP-EGIHLIGYSQGGLIARGILEQFPNHN-VRNFISLSSPHGGQYGSNQFGHFTED 122
+ + ++LIG+S GGL +R L N V + ++L +PH G
Sbjct: 120 VLAKTGAKKVNLIGHSMGGLDSRYYLGVLGGANRVASVVTLGTPHHGT------------ 167
Query: 123 ESVVELRDTKMYTENSLGLRTLDKQGKLVLISVPGVD-HFQWHNNPTVIDQHKS-TFVCF 180
+ +L +Y + GL L G+ + N + D + TF
Sbjct: 168 -ELADLVGLLIYVRSGEGLNNLRWGSLFSRNIFDGLQGGGKRLANESGGDLVRGVTFTSI 226
Query: 181 -SKFLPFINNLN 191
+ I L
Sbjct: 227 WTPKDNAIYPLA 238
>gnl|CDD|201306 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This
catalytic domain is found in a very wide range of
enzymes.
Length = 226
Score = 39.8 bits (93), Expect = 7e-04
Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 71 EGIHLIGYSQGGLIARGILEQFPNHNVRNFISLSSPH 107
+ ++L+G+S GGLIA ++P V+ + + + H
Sbjct: 42 DKVNLVGHSMGGLIALAYAAKYP-DRVKALVLVGTVH 77
>gnl|CDD|218405 pfam05057, DUF676, Putative serine esterase (DUF676). This family
of proteins are probably serine esterase type enzymes
with an alpha/beta hydrolase fold.
Length = 214
Score = 39.0 bits (91), Expect = 0.001
Identities = 39/172 (22%), Positives = 75/172 (43%), Gaps = 31/172 (18%)
Query: 7 VLVIHGILSGNKTLEKFKERIERFHPGTKVVIPDNYSN----WASLEPMWNQVLFFGSLV 62
V+++HG+ + +E E++E+ P +V + +N + ++ M ++ + V
Sbjct: 8 VVLVHGLWGNSADMEYVAEQLEKDLPDELIVFLMSSNNVSKTFKGIDVMGERLA---NEV 64
Query: 63 MKMSQNHPEGIHL--IGYSQGGLIARGIL-------------EQFPNHNVRNFISLSSPH 107
++ Q+ +G + +G+S GGLIAR + F NFI+L+SPH
Sbjct: 65 LEFVQDGSDGKKISFVGHSLGGLIARYAIGKLYDSAMSTTFKGFFKGLEPMNFITLASPH 124
Query: 108 GGQYGSNQFGHFTEDESVVELRDTKMYTENSLGLRTLDKQGKLVLISVPGVD 159
G G++ ++ +E + SL + L K G+ L D
Sbjct: 125 LGVLGNSPLINW--GLWFLE------KLKKSLSMGQLGKTGR-DLFLKDVYD 167
>gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family. This family
contains alpha/beta hydrolase enzymes of diverse
specificity.
Length = 187
Score = 38.6 bits (90), Expect = 0.002
Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 7/103 (6%)
Query: 7 VLVIHGILSGNKTLEKFKERIERFHPGTKVVIPDNYSNWASLEPMWNQVLF--FGSLVMK 64
V+++HG ++ E G +V+ PD + S P + +
Sbjct: 1 VVLLHGAGGSAESWRPL---AEALAAGYRVLAPDLPGHGDSDGPPRTPYSLEDDAADLAA 57
Query: 65 -MSQNHPEGIHLIGYSQGGLIARGILEQFPNHNVRNFISLSSP 106
+ + L+G+S GG +A + P V + +S P
Sbjct: 58 LLDALGLGPVVLVGHSLGGAVALAAAARRP-ERVAGLVLISPP 99
>gnl|CDD|203773 pfam07819, PGAP1, PGAP1-like protein. The sequences found in this
family are similar to PGAP1. This is an endoplasmic
reticulum membrane protein with a catalytic serine
containing motif that is conserved in a number of
lipases. PGAP1 functions as a GPI inositol-deacylase;
this deacylation is important for the efficient
transport of GPI-anchored proteins from the endoplasmic
reticulum to the Golgi body.
Length = 225
Score = 35.8 bits (83), Expect = 0.016
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 63 MKMSQNHPEGIHLIGYSQGGLIARGILEQFPNHN---VRNFISLSSPH 107
++ P + LIG+S GGL+AR L PN+ V ++LSSPH
Sbjct: 77 YNSNRPPPTSVILIGHSMGGLVARAALT-LPNYIPDSVNTIVTLSSPH 123
>gnl|CDD|216642 pfam01674, Lipase_2, Lipase (class 2). This family consists of
hypothetical C. elegans proteins and lipases. Lipases or
triacylglycerol acylhydrolases hydrolyse ester bonds in
triacylglycerol giving diacylglycerol, monoacylglycerol,
glycerol and free fatty acids. Lipase estA is a
extracellular lipase from B. subtilis 168.
Length = 218
Score = 33.5 bits (77), Expect = 0.092
Identities = 27/134 (20%), Positives = 43/134 (32%), Gaps = 39/134 (29%)
Query: 5 RPVLVIHGILSGN------KTLEKFKER--IERFHPGTKVVIPDNYSNWASLEPM----- 51
PV+ +HG SG K + FKER T + + L +
Sbjct: 2 TPVIFVHG-NSGLAAGGWSKLRQYFKERGYTLAELYAT------TWGDGNLLTSLQRAEM 54
Query: 52 ----WNQVLFFGSLVMKMSQNHPEGIHLIGYSQGGLIARGI------------LEQFPNH 95
Q+ F V+ + + ++ +S G IAR L
Sbjct: 55 KCEYVKQIRRFIEAVLGYTGAK---VDIVAHSMGVPIARKAILGGNCVDTNCDLGPPLTS 111
Query: 96 NVRNFISLSSPHGG 109
V FIS++ + G
Sbjct: 112 LVDTFISVAGANYG 125
>gnl|CDD|225856 COG3319, COG3319, Thioesterase domains of type I polyketide
synthases or non-ribosomal peptide synthetases
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 257
Score = 31.3 bits (71), Expect = 0.42
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 9/48 (18%)
Query: 50 PMWNQVLF-FGSL-------VMKMSQNHPEG-IHLIGYSQGGLIARGI 88
P + F SL V + + PEG L+G+S GG +A +
Sbjct: 35 PGYGAGEQPFASLDDMAAAYVAAIRRVQPEGPYVLLGWSLGGAVAFEV 82
>gnl|CDD|132319 TIGR03276, Phn-HD, phosphonate degradation operons associated HDIG
domain protein. This small clade of proteins are found
adjacent to other genes implicated in the catabolism of
phosphonates. They are members of the TIGR00277 domain
family and contain a series of five invariant histidines
(the domain in general has only four).
Length = 179
Score = 30.8 bits (70), Expect = 0.50
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 115 QFGHFTEDESVVELRDTKMYTENSLGLRTLDKQGKLVLISVPGVDHF 161
Q G FT E+ RD + +++ LR D K + P +DHF
Sbjct: 127 QGGPFTAAEADAFERDP--HAADAIRLRRWDDLAKDPGVPTPDLDHF 171
Score = 29.3 bits (66), Expect = 1.6
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 227 QFGHFTEDESVVELRDTKMYTKNSLGLRTLDKQGKLVLISVPGVDHF 273
Q G FT E+ RD + +++ LR D K + P +DHF
Sbjct: 127 QGGPFTAAEADAFERDP--HAADAIRLRRWDDLAKDPGVPTPDLDHF 171
>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional.
Length = 1296
Score = 31.2 bits (71), Expect = 0.76
Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Query: 70 PEG-IHLIGYSQGGLIARGI 88
P G HL+GYS GG +A+GI
Sbjct: 1131 PHGPYHLLGYSLGGTLAQGI 1150
>gnl|CDD|217176 pfam02670, DXP_reductoisom, 1-deoxy-D-xylulose 5-phosphate
reductoisomerase. This is a family of
1-deoxy-D-xylulose 5-phosphate reductoisomerases. This
enzyme catalyzes the formation of
2-C-methyl-D-erythritol 4-phosphate from
1-deoxy-D-xylulose-5-phosphate in the presence of
NADPH. This reaction is part of the terpenoid
biosynthesis pathway.
Length = 129
Score = 29.0 bits (66), Expect = 1.5
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 14 LSGNKTLEKFKERIERFHPGTKVVIPD 40
LS + +E E+I+ F P V + D
Sbjct: 30 LSAGRNVELLAEQIKEFKP-KYVAVAD 55
>gnl|CDD|215222 PLN02397, PLN02397, aspartate transaminase.
Length = 423
Score = 29.5 bits (67), Expect = 2.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 14 LSGNKTLEKFKERIERFHPGTKVVIPD 40
LSG +L E + RF+PG+ + IP+
Sbjct: 123 LSGTGSLRLGAEFLARFYPGSTIYIPN 149
>gnl|CDD|236121 PRK07868, PRK07868, acyl-CoA synthetase; Validated.
Length = 994
Score = 28.9 bits (65), Expect = 4.3
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 73 IHLIGYSQGGLIA 85
+HL+GYSQGG+
Sbjct: 143 VHLVGYSQGGMFC 155
>gnl|CDD|187887 cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Zn-finger domain containing protein, distant homologs of
Cas8 proteins; signature gene for I-C subtype; also
known as Csd1 family.
Length = 569
Score = 28.8 bits (65), Expect = 4.5
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 19 TLEKFKERIERFHPGTKVVIPDNYSNWASLEPMWN 53
T+ +F ER+ER +Y S +
Sbjct: 341 TVGEFLERLERHFDDLAWE--PSYGGAPSPPDIAR 373
>gnl|CDD|225783 COG3243, PhaC, Poly(3-hydroxyalkanoate) synthetase [Lipid
metabolism].
Length = 445
Score = 28.5 bits (64), Expect = 4.6
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 73 IHLIGYSQGGLIARGILEQFPNHNVRNFISLSSP 106
I+LIGY GG + L +++ L+SP
Sbjct: 183 INLIGYCVGGTLLAAALALMAAKRIKSLTLLTSP 216
>gnl|CDD|225659 COG3117, COG3117, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 188
Score = 27.7 bits (62), Expect = 6.2
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 232 TEDESVVELRDTKMYTKNSLGLRTLDKQGKL--VLISVPGVDHFQ 274
E E V D YT L D+QGKL L + V+H+
Sbjct: 28 DEIEQVRPNPDEPAYTMEGLDTTVYDEQGKLKYRLTAQ-HVEHYS 71
Score = 27.4 bits (61), Expect = 6.8
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 120 TEDESVVELRDTKMYTENSLGLRTLDKQGKL--VLISVPGVDHFQ 162
E E V D YT L D+QGKL L + V+H+
Sbjct: 28 DEIEQVRPNPDEPAYTMEGLDTTVYDEQGKLKYRLTAQ-HVEHYS 71
>gnl|CDD|215300 PLN02545, PLN02545, 3-hydroxybutyryl-CoA dehydrogenase.
Length = 295
Score = 27.8 bits (62), Expect = 6.6
Identities = 27/103 (26%), Positives = 40/103 (38%), Gaps = 19/103 (18%)
Query: 7 VLVIHGILSGNKTLEKFKERIERFHPGTKVVIPDNYSNWAS---LEPMWNQVLFFGS--- 60
V +I G + ++ + K ERF G VV +Y + L PM N+ +
Sbjct: 152 VEIIRGADTSDEVFDATKALAERF--GKTVVCSQDYPGFIVNRILMPMINEAFYALYTGV 209
Query: 61 -------LVMKMSQNHPEG-IHL---IGYSQGGLIARGILEQF 92
MK+ NHP G +HL IG I + + E
Sbjct: 210 ASKEDIDTGMKLGTNHPMGPLHLADFIGLDTCLSIMKVLHEGL 252
>gnl|CDD|225176 COG2267, PldB, Lysophospholipase [Lipid metabolism].
Length = 298
Score = 27.7 bits (62), Expect = 6.6
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 66 SQNHPEGIHLIGYSQGGLIARGILEQFPNHNVRNFISLSSP 106
+ + L+G+S GGLIA L ++P + + LSSP
Sbjct: 102 EPDPGLPVFLLGHSMGGLIALLYLARYP-PRIDGLV-LSSP 140
>gnl|CDD|221718 pfam12695, Abhydrolase_5, Alpha/beta hydrolase family. This
family contains a diverse range of alpha/beta hydrolase
enzymes.
Length = 145
Score = 27.0 bits (60), Expect = 7.5
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 8/80 (10%)
Query: 6 PVLVIHGILSGNKTLEKFKERIERFHPGTKVVIPDNYSNWASLEPMWNQVLFFGSLVMKM 65
V+++HG + + G VV D + ASL + V+
Sbjct: 1 LVVLLHGAGGDPEAYAPLARALASR--GYNVVAVDYPGHGASLGAPDAEA------VLAD 52
Query: 66 SQNHPEGIHLIGYSQGGLIA 85
+ PE I L+G+S GG +A
Sbjct: 53 APLDPERIVLVGHSLGGGVA 72
>gnl|CDD|236901 PRK11360, PRK11360, sensory histidine kinase AtoS; Provisional.
Length = 607
Score = 28.0 bits (63), Expect = 7.9
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Query: 128 LRDTKMYTENSL-----GLRTLDKQGKLVLIS 154
LR+T+ E L G+ +D+QGK+ ++
Sbjct: 257 LRETRSLNELILESIADGVIAIDRQGKITTMN 288
>gnl|CDD|216224 pfam00975, Thioesterase, Thioesterase domain. Peptide synthetases
are involved in the non-ribosomal synthesis of peptide
antibiotics. Next to the operons encoding these enzymes,
in almost all cases, are genes that encode proteins that
have similarity to the type II fatty acid thioesterases
of vertebrates. There are also modules within the
peptide synthetases that also share this similarity.
With respect to antibiotic production, thioesterases are
required for the addition of the last amino acid to the
peptide antibiotic, thereby forming a cyclic antibiotic.
Thioesterases (non-integrated) have molecular masses of
25-29 kDa.
Length = 224
Score = 27.3 bits (61), Expect = 8.2
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 69 HPEG-IHLIGYSQGGLIARGI---LEQFPNHNVRNFISLSSPHGGQYGSNQFGHFTEDES 124
PEG L G+S GGL+A + LE+ I LS + +G + H D+
Sbjct: 62 QPEGPYALFGHSMGGLLAFEVARRLER-RGEEPAGLI-LSDAYAPHFGRREASHLLGDDE 119
Query: 125 VV-ELRD 130
++ ELR
Sbjct: 120 LLAELRR 126
>gnl|CDD|223814 COG0743, Dxr, 1-deoxy-D-xylulose 5-phosphate reductoisomerase
[Lipid metabolism].
Length = 385
Score = 27.6 bits (62), Expect = 8.4
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 14 LSGNKTLEKFKERIERFHPGTKVVIPD-NYSNWASLEPMWNQVLF 57
L+ K +E E+I F P VVI D + + +VL
Sbjct: 33 LAAGKNVELLAEQIREFKP-KYVVIADESAAKELEDLLPGTEVLV 76
>gnl|CDD|240293 PTZ00149, PTZ00149, hypoxanthine phosphoribosyltransferase;
Provisional.
Length = 241
Score = 27.4 bits (61), Expect = 8.6
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 3 RYRPVLVIHGILSGNKTLEKFKERIERFHPGT 34
+ + VL++ I+ TL KF E +++F P T
Sbjct: 149 KDKHVLIVEDIIDTGNTLVKFCEYLKKFEPKT 180
>gnl|CDD|220394 pfam09773, Meckelin, Meckelin (Transmembrane protein 67). Members
of this family are thought to be related to the ciliary
basal body. Defects result in Meckel syndrome type 3, an
autosomal recessive disorder characterized by a
combination of renal cysts and variably associated
features including developmental anomalies of the
central nervous system (typically encephalocele),
hepatic ductal dysplasia and cysts, and polydactyly.
Joubert syndrome type 6 is also a manifestation of
certain mutations; it is an autosomal recessive
congenital malformation of the cerebellar vermis and
brainstem with abnormalities of axonal decussation
(crossing in the brain) affecting the corticospinal
tract and superior cerebellar peduncles. Individuals
with Joubert syndrome have motor and behavioral
abnormalities, including an inability to walk due to
severe clumsiness and 'mirror' movements, and cognitive
and behavioural disturbances.
Length = 847
Score = 27.8 bits (62), Expect = 8.8
Identities = 16/81 (19%), Positives = 25/81 (30%), Gaps = 24/81 (29%)
Query: 88 ILEQFPNHNVRNFISLSS---------PHGGQYGSNQFGHFTEDESVVELRDTKM----- 133
+F H ++ F+ L S QFG++ ES+ DT M
Sbjct: 585 FYYRFVCHPLQQFVDLCSVSNISIFILSE------PQFGYYIHGESIHGHADTSMEEMQS 638
Query: 134 ----YTENSLGLRTLDKQGKL 150
+ +R L Q
Sbjct: 639 NLRREAQGMCPVRGLGGQSDC 659
>gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in
Rab3-interacting molecule (RIM) proteins. RIMs are
believed to organize specialized sites of the plasma
membrane called active zones. They also play a role in
controlling neurotransmitter release, plasticity
processes, as well as memory and learning. RIM
contains an N-terminal zinc finger domain, a PDZ
domain, and two C-terminal C2 domains (C2A, C2B). C2
domains fold into an 8-standed beta-sandwich that can
adopt 2 structural arrangements: Type I and Type II,
distinguished by a circular permutation involving their
N- and C-terminal beta strands. Many C2 domains are
Ca2+-dependent membrane-targeting modules that bind a
wide variety of substances including bind
phospholipids, inositol polyphosphates, and
intracellular proteins. Most C2 domain proteins are
either signal transduction enzymes that contain a
single C2 domain, such as protein kinase C, or membrane
trafficking proteins which contain at least two C2
domains, such as synaptotagmin 1. However, there are a
few exceptions to this including RIM isoforms and some
splice variants of piccolo/aczonin and intersectin
which only have a single C2 domain. C2 domains with a
calcium binding region have negatively charged
residues, primarily aspartates, that serve as ligands
for calcium ions. Members here have a type-I topology
and do not bind Ca2+.
Length = 125
Score = 26.4 bits (59), Expect = 9.3
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 14/45 (31%)
Query: 21 EKFKERIERFHPGTKVVIPDNYSNWASLEPMWNQVLFFGSLVMKM 65
EK K R TK V +L P WNQ + ++ +
Sbjct: 51 EKSKRR-------TKTVKK-------TLNPEWNQTFEYSNVRRET 81
>gnl|CDD|239311 cd03013, PRX5_like, Peroxiredoxin (PRX) family, PRX5-like
subfamily; members are similar to the human protein,
PRX5, a homodimeric TRX peroxidase, widely expressed in
tissues and found cellularly in mitochondria,
peroxisomes and the cytosol. The cellular location of
PRX5 suggests that it may have an important antioxidant
role in organelles that are major sources of reactive
oxygen species (ROS), as well as a role in the control
of signal transduction. PRX5 has been shown to reduce
hydrogen peroxide, alkyl hydroperoxides and
peroxynitrite. As with all other PRXs, the N-terminal
peroxidatic cysteine of PRX5 is oxidized into a sulfenic
acid intermediate upon reaction with peroxides. Human
PRX5 is able to resolve this intermediate by forming an
intramolecular disulfide bond with its C-terminal
cysteine (the resolving cysteine), which can then be
reduced by TRX, just like an atypical 2-cys PRX. This
resolving cysteine, however, is not conserved in other
members of the subfamily. In such cases, it is assumed
that the oxidized cysteine is directly resolved by an
external small-molecule or protein reductant, typical of
a 1-cys PRX. In the case of the H. influenza PRX5
hybrid, the resolving glutaredoxin domain is on the same
protein chain as PRX. PRX5 homodimers show an A-type
interface, similar to atypical 2-cys PRXs.
Length = 155
Score = 26.8 bits (60), Expect = 9.4
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 17/53 (32%)
Query: 141 LRTLDKQGKLVLISVPGVDHFQWHNNPTVIDQHKSTFVCFSKFLP-FINNLNA 192
L L K K+V+ VPG PT C ++ LP ++ N +
Sbjct: 23 LSELFKGKKVVIFGVPGA------FTPT----------CSAQHLPGYVENADE 59
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.138 0.427
Gapped
Lambda K H
0.267 0.0706 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,057,177
Number of extensions: 1417993
Number of successful extensions: 1334
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1324
Number of HSP's successfully gapped: 46
Length of query: 291
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 195
Effective length of database: 6,679,618
Effective search space: 1302525510
Effective search space used: 1302525510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.6 bits)