RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17147
(291 letters)
>1pja_A Palmitoyl-protein thioesterase 2 precursor; hydrolase,
glycoprotein, lysosome; HET: NAG; 2.70A {Homo sapiens}
SCOP: c.69.1.13
Length = 302
Score = 213 bits (542), Expect = 4e-68
Identities = 98/287 (34%), Positives = 150/287 (52%), Gaps = 21/287 (7%)
Query: 4 YRPVLVIHGILSGNKTLEKFKERIERFHPGTKVVIPDNYSNWASLEPMWNQVLFFGSLVM 63
Y+PV+V+HG+ + + E I HPGT V + D + SL P+W QV F V+
Sbjct: 36 YKPVIVVHGLFDSSYSFRHLLEYINETHPGTVVTVLDLFDGRESLRPLWEQVQGFREAVV 95
Query: 64 KMSQNHPEGIHLIGYSQGGLIARGILEQFPNHNVRNFISLSSPHGGQYGSNQFGHFTEDE 123
+ P+G+HLI YSQGGL+ R +L +HNV +FISLSSP GQYG + +
Sbjct: 96 PIMAKAPQGVHLICYSQGGLVCRALLSVMDDHNVDSFISLSSPQMGQYGDTDYLKWLFPT 155
Query: 124 SVVELRDTKMYTENSLGLRTLDKQGKLVLISVPGVDHFQWHNNPTVIDQHKSTFVCFSKF 183
S+ Y+ + ++P D ++ S F
Sbjct: 156 SMRSNLYRICYSP-----------------WGQEFSICNYWHDPHHDDL----YLNASSF 194
Query: 184 LPFINNLNATPNSNLFKLGLLRLHRMVLIGGPNDSVITPWQSSQFGHFTEDESVVELRDT 243
L IN PN+ +++ LR+ +VLIGGP+D VITPWQSS FG + +E+V+E+ +
Sbjct: 195 LALINGERDHPNATVWRKNFLRVGHLVLIGGPDDGVITPWQSSFFGFYDANETVLEMEEQ 254
Query: 244 KMYTKNSLGLRTLDKQGKLVLISVPGVDHFQWHNNPTVIDQHVLPYL 290
+Y ++S GL+TL +G +V + G+ H WH+N T+ + + P+L
Sbjct: 255 LVYLRDSFGLKTLLARGAIVRCPMAGISHTAWHSNRTLYETCIEPWL 301
>1ei9_A Palmitoyl protein thioesterase 1; alpha/beta hydrolase,
glycoprotein, hydrolase; HET: NDG NAG; 2.25A {Bos
taurus} SCOP: c.69.1.13 PDB: 1eh5_A* 1exw_A* 3gro_A
Length = 279
Score = 191 bits (487), Expect = 5e-60
Identities = 65/300 (21%), Positives = 131/300 (43%), Gaps = 35/300 (11%)
Query: 3 RYRPVLVIHGI---LSGNKTLEKFKERIERFHPGTKVVIPDNYSNWAS------LEPMWN 53
P+++ HG+ ++ K+ +E+ PG V+ + + +
Sbjct: 4 APLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTLREDVENSFFLNVNS 63
Query: 54 QVLFFGSLVMKMSQNHPEGIHLIGYSQGGLIARGILEQFPNHNVRNFISLSSPHGGQYGS 113
QV ++ K +G + +G+SQGG R + ++ P+ + N IS+ H G +G
Sbjct: 64 QVTTVCQILAKD-PKLQQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGGQHQGVFGL 122
Query: 114 NQFGHFTEDESVVELRDTKMYTENSLGLRTLDKQGKLVLISVPGVDHFQWHNNPTVIDQH 173
+ + + + + G Q +LV ++ ++P D
Sbjct: 123 PRCPGES--SHICDFIRKTLNA----GAYNKAIQERLVQ--------AEYWHDPIREDI- 167
Query: 174 KSTFVCFSKFLPFINNLNATPNSNLFKLGLLRLHRMVLIGGPNDSVITPWQSSQFGHF-- 231
+ S FL IN S +K L+ L + V++ ND+++ P S FG +
Sbjct: 168 ---YRNHSIFLADINQERGVNES--YKKNLMALKKFVMVKFLNDTIVDPVDSEWFGFYRS 222
Query: 232 TEDESVVELRDTKMYTKNSLGLRTLDKQGKLVLISVPGVDHFQWHNNPTVIDQHVLPYLD 291
+ + + L+++ +YT++ LGL+ +DK G+LV +++ G DH Q + H++P+L+
Sbjct: 223 GQAKETIPLQESTLYTQDRLGLKAMDKAGQLVFLALEG-DHLQL--SEEWFYAHIIPFLE 279
>1isp_A Lipase; alpha/beta hydrolase fold, hydrolase; 1.30A {Bacillus
subtilis} SCOP: c.69.1.18 PDB: 1i6w_A 1r4z_A* 1r50_A*
2qxu_A 2qxt_A 1t4m_A 1t2n_A 3d2a_A 3qzu_A 3d2b_A 3d2c_A
3qmm_A
Length = 181
Score = 60.1 bits (146), Expect = 3e-11
Identities = 26/174 (14%), Positives = 54/174 (31%), Gaps = 15/174 (8%)
Query: 5 RPVLVIHGILSGNKTLEKFKERIER-FHPGTKVVIPDNYSNWASLEPMWNQVLFFGSLVM 63
PV+++HGI + K + K+ D + + + F V+
Sbjct: 4 NPVVMVHGIGGASFNFAGIKSYLVSQGWSRDKLYAVDFWDKTGTNYNNGPVLSRFVQKVL 63
Query: 64 KMSQNHPEGIHLIGYSQGGLIARGILEQFPNHN-VRNFISLSSPHGGQYGSNQFGHFTED 122
+ + + ++ +S GG ++ N V N ++L + G G
Sbjct: 64 D--ETGAKKVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANRLTTGKALPGTDPNQ 121
Query: 123 E----SVVELRDTKMYTENSLGLRTLDKQGKLVLISVPGVDHFQWHNNPTVIDQ 172
+ S+ D + S + + + GV H + V
Sbjct: 122 KILYTSIYSSADMIVMNYLSRLDGARN-------VQIHGVGHIGLLYSSQVNSL 168
>3icv_A Lipase B, CALB; circular permutation, cleavage on PAIR of basic
residues, glycoprotein, hydrolase, lipid degradation,
zymogen, disulf; HET: NAG BTB; 1.49A {Candida
antarctica} PDB: 3icw_A*
Length = 316
Score = 50.6 bits (120), Expect = 2e-07
Identities = 17/110 (15%), Positives = 36/110 (32%), Gaps = 9/110 (8%)
Query: 5 RPVLVIHGILSGNKTLEKFKERIERF--HPGTKVVIPDNYSNWASLEPMWNQVLFFGSLV 62
+P+L++ G + F G L + + +
Sbjct: 66 KPILLVPGTGTTGPQS--FDSNWIPLSAQLGYTPCWISPP--PFMLNDTQVNTEYMVNAI 121
Query: 63 MKMSQNHPEG-IHLIGYSQGGLIARGILEQFP--NHNVRNFISLSSPHGG 109
+ + ++ +SQGGL+A+ L FP V ++ + + G
Sbjct: 122 TTLYAGSGNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYKG 171
>1tca_A Lipase; hydrolase(carboxylic esterase); HET: NAG; 1.55A {Candida
antarctica} SCOP: c.69.1.17 PDB: 1lbs_A* 1lbt_A* 1tcb_A*
1tcc_A*
Length = 317
Score = 49.4 bits (117), Expect = 5e-07
Identities = 17/110 (15%), Positives = 36/110 (32%), Gaps = 9/110 (8%)
Query: 5 RPVLVIHGILSGNKTLEKFKERIERF--HPGTKVVIPDNYSNWASLEPMWNQVLFFGSLV 62
+P+L++ G + F G L + + +
Sbjct: 32 KPILLVPGTGTTGPQS--FDSNWIPLSTQLGYTPCWISPP--PFMLNDTQVNTEYMVNAI 87
Query: 63 MKMSQNHPEG-IHLIGYSQGGLIARGILEQFP--NHNVRNFISLSSPHGG 109
+ + ++ +SQGGL+A+ L FP V ++ + + G
Sbjct: 88 TALYAGSGNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYKG 137
>1ys1_X Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor hexylphosphonic
acid (R) 2-methyl-3-phenylpropyl ester, hydrolase; HET:
2HR; 1.10A {Burkholderia cepacia} PDB: 1ys2_X* 4lip_D
1hqd_A 2lip_A 1oil_A* 3lip_A 2nw6_A 5lip_A* 1cvl_A
2es4_A 1tah_B 1qge_D 1qge_E
Length = 320
Score = 48.5 bits (115), Expect = 9e-07
Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 9/111 (8%)
Query: 5 RPVLVIHGILSGNKTLEKFKERIERFHP-----GTKVVIPDNYSNWASLEPMWNQVLFFG 59
P++++HG L+G E G V + + S + S + +
Sbjct: 9 YPIILVHG-LTGTDKYAGVLEYWYGIQEDLQQRGATVYVAN-LSGFQSDDGPNGRGEQLL 66
Query: 60 SLVMK-MSQNHPEGIHLIGYSQGGLIARGILEQFPNHNVRNFISLSSPHGG 109
+ V ++ ++L+G+SQGGL +R + P+ V + ++ +PH G
Sbjct: 67 AYVKTVLAATGATKVNLVGHSQGGLTSRYVAAVAPDL-VASVTTIGTPHRG 116
>1ex9_A Lactonizing lipase; alpha-beta hydrolase fold, phosphonate
inhibitor; HET: OCP; 2.54A {Pseudomonas aeruginosa}
SCOP: c.69.1.18
Length = 285
Score = 45.1 bits (106), Expect = 1e-05
Identities = 36/245 (14%), Positives = 81/245 (33%), Gaps = 25/245 (10%)
Query: 3 RYRPVLVIHGIL--SGNKTLEKFKERIERFH-PGTKVVIPD---NYSNWASLEPMWNQVL 56
+Y P+++ HG+L ++ + G +V + + ++ E + QV
Sbjct: 7 KY-PIVLAHGMLGFDNILGVDYWFGIPSALRRDGAQVYVTEVSQLDTSEVRGEQLLQQVE 65
Query: 57 FFGSLVMKMSQNHPEGIHLIGYSQGGLIARGILEQFPNHNVRNFISLSSPHGG----QYG 112
++ + ++LIG+S GG R + P+ + + S+ +PH G +
Sbjct: 66 ------EIVALSGQPKVNLIGHSHGGPTIRYVAAVRPDL-IASATSVGAPHKGSDTADFL 118
Query: 113 SNQFGHFTEDESVVELRDTKMYTENSLGLRTLDKQGKLVLISVPGVDHFQWHNNPTVIDQ 172
+ + L ++ + L + Q L + + N
Sbjct: 119 RQIPPGSAGEAVLSGLVNSLGALISFLSSGSTGTQNSLGSLESLNSEGAARFNAKYPQGI 178
Query: 173 HKSTFVCFSKFLP----FINNLNATPNSNLFKL-GLLRLHRMVL-IGGPNDSVITPWQSS 226
S + + + + ++ + L L + G ND ++ SS
Sbjct: 179 PTSACGEGAYKVNGVSYYSWSGSSPLTNFLDPSDAFLGASSLTFKNGTANDGLVGT-CSS 237
Query: 227 QFGHF 231
G
Sbjct: 238 HLGMV 242
>2x5x_A PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE, hydrolase,
biodegradation, catal; HET: PG4; 1.20A {Paucimonas
lemoignei} PDB: 2vtv_A* 2x76_A
Length = 342
Score = 44.9 bits (105), Expect = 2e-05
Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 73 IHLIGYSQGGLIARGILEQFPNHN-VRNFISLSSPHGG 109
+ ++ +S G ++ L+ + N VR FI+L+ G
Sbjct: 130 VDIVAHSMGVSMSLATLQYYNNWTSVRKFINLAGGIRG 167
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.0 bits (95), Expect = 4e-04
Identities = 44/238 (18%), Positives = 72/238 (30%), Gaps = 65/238 (27%)
Query: 30 FHPGTKVVIPDNYSNWASLEPMWNQV-----------LFFGSLVMKMSQNHPEGIHLIGY 78
F P IP L +W V L SLV K + I I Y
Sbjct: 381 FPPSAH--IPT-----ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI-Y 432
Query: 79 -----SQGGLIA--RGILEQFPNHNVRNFISLSSPHGGQYGSNQFG-HFTE---DESVVE 127
A R I++ + + L P+ QY + G H E +
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 128 LRDTKMYTENSLGLRTLDKQGKLVLISVPGVDHFQWHNNPTVIDQHKSTFVCFSKFLPFI 187
R ++ L R L + K+ S W+ + ++++ T + P+I
Sbjct: 493 FR--MVF----LDFRFL--EQKIRHDSTA------WNASGSILN----TLQQLKFYKPYI 534
Query: 188 NNLNATPNSNLFK------LGLLRLHRMVLIGGPNDSVITPWQSSQFGHFTEDESVVE 239
N ++ L L LI ++ + EDE++ E
Sbjct: 535 -----CDNDPKYERLVNAILDFLPKIEENLICSKYTDLL------RIALMAEDEAIFE 581
>3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2,
structural genomics, protein structure initiative,
midwest for structural genomics; 2.00A {Oenococcus oeni}
Length = 272
Score = 37.8 bits (88), Expect = 0.002
Identities = 17/112 (15%), Positives = 33/112 (29%), Gaps = 17/112 (15%)
Query: 6 PVLVIHGILSGNKTLEKFKERIERFHPGTKVVIPDN--------YSNWASLEPMWNQVLF 57
P++ +HG+ ++ F E + + + D S S + +
Sbjct: 23 PIIFLHGLSLDKQSTCLFFEPLSNV-GQYQRIYLDLPGMGNSDPISPSTSDNVLETLIEA 81
Query: 58 FGSLVMKMSQNHPEGIHLIGYSQGGLIARGILEQFPNHNVRNFISLSSPHGG 109
L G+S GG +A+ I + L+ P
Sbjct: 82 I------EEIIGARRFILYGHSYGGYLAQAIAFHLKDQ-TLGVF-LTCPVIT 125
>3fle_A SE_1780 protein; structural genomics, APC61035.1, PSI-2, protein
structure in midwest center for structural genomics,
MCSG; 2.01A {Staphylococcus epidermidis}
Length = 249
Score = 37.1 bits (85), Expect = 0.004
Identities = 13/138 (9%), Positives = 42/138 (30%), Gaps = 28/138 (20%)
Query: 6 PVLVIHGILSGNKTLEKFKERIERFHPGTKVV------------------------IPDN 41
L +HG ++ ++ + +V+ +
Sbjct: 8 ATLFLHGYGGSERSETFMVKQALNKNVTNEVITARVSSEGKVYFDKKLSEDAANPIVKVE 67
Query: 42 YSNWASLEPMWNQVLFFGSLVMKMSQNHPEGIHLIGYSQGGLIARGILEQFPNH----NV 97
+ + + N L SQ + + +G+S G + ++ + + +
Sbjct: 68 FKDNKNGNFKENAYWIKEVLSQLKSQFGIQQFNFVGHSMGNMSFAFYMKNYGDDRHLPQL 127
Query: 98 RNFISLSSPHGGQYGSNQ 115
+ ++++ + G N+
Sbjct: 128 KKEVNIAGVYNGILNMNE 145
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 0.004
Identities = 54/290 (18%), Positives = 86/290 (29%), Gaps = 101/290 (34%)
Query: 44 NWASLEPMWNQVLFFGSLVMKMSQNH----PEGIHLIGYSQGGLIARGILEQFPNHNVRN 99
+ S P+ L GSL H P SQ + EQF
Sbjct: 2 DAYSTRPL---TLSHGSL------EHVLLVPTASF-FIASQ-------LQEQFNK----- 39
Query: 100 FISLSSPHGGQYGSNQFGHFTEDESVVELRDTKMYTENSLG-LRTLDKQGKL-----VLI 153
L P + F E + EL + LG + +L + K+ VL
Sbjct: 40 --ILPEP------TEGFAADDEPTTPAEL--VGKF----LGYVSSLVEPSKVGQFDQVLN 85
Query: 154 SVPGVDHFQW--------H--------NNPTVIDQHKSTFVCFSKFLPFIN-NLNATPNS 196
+ F+ H N T + + K + + NS
Sbjct: 86 LC--LTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS 143
Query: 197 NLFKL---GLLRLHRMVLIGGPNDSVITPWQSSQFGHFTEDESVVELRDT-KMYTKNSLG 252
LF+ G +L + + GG Q + +F E LRD + Y + L
Sbjct: 144 ALFRAVGEGNAQL--VAIFGG---------QGNTDDYFEE------LRDLYQTY--HVLV 184
Query: 253 LRTLDKQGKLV--LISVP---------GVDHFQWHNNPTVIDQHVLPYLD 291
+ + + LI G++ +W NP+ + YL
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS--NTPDKDYLL 232
Score = 35.0 bits (80), Expect = 0.029
Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 25/93 (26%)
Query: 108 GGQYGSNQFGHFTEDESVVELRDTKMY-TENSLGLRTLDKQGKLV--LISVP-------- 156
GGQ G+ +F E LRD +Y T + L + + + LI
Sbjct: 161 GGQ-GNTD-DYFEE------LRD--LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT 210
Query: 157 -GVDHFQWHNNPTVIDQHKSTFVCFSKF-LPFI 187
G++ +W NP+ + ++ P I
Sbjct: 211 QGLNILEWLENPS--NTPDKDYLLSIPISCPLI 241
Score = 28.9 bits (64), Expect = 2.7
Identities = 58/331 (17%), Positives = 105/331 (31%), Gaps = 116/331 (35%)
Query: 2 KRYRPVLVIHGILSGNKTLEKF---KERIERFHP-GTKVV--------IPD-NY--SNWA 46
+ Y LV I +TL + E+ G ++ PD +Y S
Sbjct: 178 QTYHV-LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI 236
Query: 47 SLEPMWNQVLFFGS--LVMKMSQNHPEGIH-----LIGYSQGGLIARGI-----LEQFPN 94
S P+ V+ + K+ P + G+SQG + A I E F
Sbjct: 237 SC-PL-IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF-F 293
Query: 95 HNVRNFISLSSPHGGQYGSNQFGHFTEDESVVELRDTKMYTENSLGLRTLDKQGKLVLIS 154
+VR I++ G + + + S++E D+ EN+ G+ + ++S
Sbjct: 294 VSVRKAITVLF-FIGVRCYEAYPNTSLPPSILE--DSL---ENNEGVPSP-------MLS 340
Query: 155 VPGVDHFQWHNNPTVIDQHKSTFVCFSKFLPFINNLNAT-PNSNLFKLGLLRLHRMVLIG 213
+ + Q + + +N N+ P ++ + L+
Sbjct: 341 ISNLTQEQ-------VQDY-------------VNKTNSHLPAGK-------QVE-ISLVN 372
Query: 214 GPNDSVITPWQSSQFGHFTEDES----VVELRDTKMYTKNSLGL---RTLDKQGKLVL-- 264
G + V++ G +S + LR K K GL R + KL
Sbjct: 373 GAKNLVVS-------GP---PQSLYGLNLTLR--KA--KAPSGLDQSRIPFSERKLKFSN 418
Query: 265 ----ISVPGVDHFQWHNNPTVIDQHVLPYLD 291
++ P F H+ L
Sbjct: 419 RFLPVASP----F--HS----------HLLV 433
>3qpd_A Cutinase 1; alpha-beta hydrolase fold, esterase, hydrolase, mono-
phosphorylated serine residue, secreted, phosphorylated
Ser residue; HET: SEP; 1.57A {Aspergillus oryzae} PDB:
3gbs_A
Length = 187
Score = 35.3 bits (81), Expect = 0.009
Identities = 14/99 (14%), Positives = 26/99 (26%), Gaps = 11/99 (11%)
Query: 23 FKERIERFHPGTKVVIPDNYSNWASLEPMWNQ-------VLFFGSLVMKMSQNHPE-GIH 74
R++ G A L + L + P+ I
Sbjct: 37 VCNRLKLARSGDVACQGVGPRYTADLPSNALPEGTSQAAIAEAQGLFEQAVSKCPDTQIV 96
Query: 75 LIGYSQGGLIARGILEQFP---NHNVRNFISLSSPHGGQ 110
GYSQG + G +++ ++ + Q
Sbjct: 97 AGGYSQGTAVMNGAIKRLSADVQDKIKGVVLFGYTRNAQ 135
>3ds8_A LIN2722 protein; unkonwn function, structural genomics, PSI, MCSG,
P structure initiative; 1.80A {Listeria innocua}
Length = 254
Score = 36.0 bits (82), Expect = 0.009
Identities = 17/177 (9%), Positives = 53/177 (29%), Gaps = 31/177 (17%)
Query: 6 PVLVIHGILSGNKTLEKFKERIERFHPGTKVVIPDNYSNWASL----------------- 48
P+++IHG +L+K +++ + + + ++ +
Sbjct: 5 PIILIHGSGGNASSLDKMADQLMNEYRSSNEALTMTVNSEGKIKFEGKLTKDAKRPIIKF 64
Query: 49 ------EPMWNQVLFFGSLVMKMSQNHP-EGIHLIGYSQGGLIARGILEQFPNH----NV 97
+ + + + + + +G+S GGL E + +
Sbjct: 65 GFEQNQATPDDWSKWLKIAMEDLKSRYGFTQMDGVGHSNGGLALTYYAEDYAGDKTVPTL 124
Query: 98 RNFISLSSPHGGQYGSNQFGHFTEDESVVELRDTKMYTENSLGLRTLDKQGKLVLIS 154
R +++ SP ++ + + T + +++ I+
Sbjct: 125 RKLVAIGSPFNDLDPNDNGMDLSFKKL---PNSTPQMDYFIKNQTEVSPDLEVLAIA 178
>2rau_A Putative esterase; NP_343859.1, putative lipase, structural
genomics, joint CEN structural genomics, JCSG; HET: PG4
UNL; 1.85A {Sulfolobus solfataricus P2}
Length = 354
Score = 36.1 bits (82), Expect = 0.010
Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 61 LVMKMSQNHPEG-IHLIGYSQGGLIARGILEQFPNHNVRNFISL-SSPHGGQYGSNQFGH 118
+V + ++ + I+L G S GG+ A + ++++ I L P +
Sbjct: 133 VVSFIKRDSGQERIYLAGESFGGIAALNYSSLYWKNDIKGLILLDGGPTKHGIRPKFYTP 192
Query: 119 FT 120
Sbjct: 193 EV 194
>3e0x_A Lipase-esterase related protein; APC60309, clostridium
acetobutylicum ATCC 824, structural genomics, PSI-2;
HET: MSE; 1.45A {Clostridium acetobutylicum}
Length = 245
Score = 35.7 bits (83), Expect = 0.011
Identities = 18/96 (18%), Positives = 37/96 (38%), Gaps = 9/96 (9%)
Query: 5 RPVLVIHGILSGNKTLEKFKERIERFHPGTKVVIPDN----YSNWASLEPMWNQVLFFGS 60
+L +HG K + ++ +E ++ ++ D S ++ + +
Sbjct: 17 NTLLFVHGSGCNLKIFGELEKYLEDYN----CILLDLKGHGESKGQCPSTVYGYIDNVAN 72
Query: 61 LVMKMS-QNHPEGIHLIGYSQGGLIARGILEQFPNH 95
+ H + I LIGYS GG I G+ + +
Sbjct: 73 FITNSEVTKHQKNITLIGYSMGGAIVLGVALKKLPN 108
>2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone
biosynthesis, lyase; 1.94A {Staphylococcus aureus}
Length = 269
Score = 35.0 bits (81), Expect = 0.022
Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 19/136 (13%)
Query: 6 PVLVIHGILSGNKTLEKFKERIERFHPGTKVVIPD---------NYSNWASLEPMWNQVL 56
++ +HG LS ++T + IE+F V+ D + + + + +
Sbjct: 18 VLVFLHGFLSDSRT---YHNHIEKFTDNYHVITIDLPGHGEDQSSMDETWNFDYITTLLD 74
Query: 57 FFGSLVMKMSQNHPEGIHLIGYSQGGLIARGILEQFPNHNVRNFISLSSPHGGQYGSNQF 116
+ + + I L GYS GG +A + N I S+ G + +NQ
Sbjct: 75 RI------LDKYKDKSITLFGYSMGGRVALYYAINGH-IPISNLILESTSPGIKEEANQL 127
Query: 117 GHFTEDESVVELRDTK 132
D++ ++ D
Sbjct: 128 ERRLVDDARAKVLDIA 143
>3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure
initiative, PSI-2, structural midwest center for
structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus
anthracis}
Length = 278
Score = 34.6 bits (80), Expect = 0.023
Identities = 17/121 (14%), Positives = 35/121 (28%), Gaps = 14/121 (11%)
Query: 6 PVLVIHGILSGNKTLEKFKERIERFHPGTKVVIPD----NYSNW-ASLEP--MWNQVLFF 58
P+ V H N F + V + + S+ + M +
Sbjct: 25 PLCVTHLYSEYNDNGNTFANPFTDHY---SVYLVNLKGCGNSDSAKNDSEYSMTETIKD- 80
Query: 59 GSLVMKMSQNHPEGIHLIGYSQGGLIARGILEQFPNHNVRNFISLSSPHGGQYGSNQFGH 118
L + G+S GG++A + + I + +Y S++
Sbjct: 81 --LEAIREALYINKWGFAGHSAGGMLALVYATEAQES-LTKIIVGGAAASKEYASHKDSI 137
Query: 119 F 119
+
Sbjct: 138 Y 138
>3lp5_A Putative cell surface hydrolase; structural genom PSI2, MCSG,
protein structure initiative, midwest center FO
structural genomics; 2.00A {Lactobacillus plantarum}
Length = 250
Score = 34.3 bits (78), Expect = 0.029
Identities = 26/222 (11%), Positives = 63/222 (28%), Gaps = 56/222 (25%)
Query: 6 PVLVIHGILSGNKTLEKFKERIERFHPGTKVVIPDNYSNWASL-----------EPMWNQ 54
PV+++ G + + + + P V+ ++ EP
Sbjct: 6 PVIMVPGSSASQNRFDSLITELGKETPKKHSVLKLTVQTDGTIKYSGSIAANDNEPFI-V 64
Query: 55 VLFFGSLVMKMS-----------------QNHPEGIHLIGYSQGGLIARGILEQFPNH-- 95
+ F + K + H + +G+S GGLI LE++
Sbjct: 65 IGFANNRDGKANIDKQAVWLNTAFKALVKTYHFNHFYALGHSNGGLIWTLFLERYLKESP 124
Query: 96 --NVRNFISLSSPHGGQYGSNQF------------GHFTEDESVV-------ELRDTKMY 134
++ ++++SP+ + S E +V D +
Sbjct: 125 KVHIDRLMTIASPYNMESTSTTAKTSMFKELYRYRTGLPESLTVYSIAGTENYTSDGTVP 184
Query: 135 TENSLGLRTLDKQG----KLVLISVPGVDHFQWHNNPTVIDQ 172
+ + + + + ++ H N ++
Sbjct: 185 YNSVNYGKYIFQDQVKHFTEITVTGANTAHSDLPQNKQIVSL 226
>3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase
fold, carboxylesterase, Ser- hydrolase; 2.00A
{Streptococcus mutans}
Length = 292
Score = 34.2 bits (78), Expect = 0.036
Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 7/110 (6%)
Query: 6 PVLVIHGILSGNKTLEKFKERIERFHPGTKVVIPD----NYSNWASLEPMWNQVLFFGSL 61
+ + G T + F I++ ++ D YS S + + ++
Sbjct: 43 CFVFLSG-AGFFSTADNFANIIDKLPDSIGILTIDAPNSGYSPV-SNQANVGLRDWVNAI 100
Query: 62 VMKMSQNHPEGIHLIGYSQGGLIARGILEQFPNHNVRNFISLSSPHGGQY 111
+M + L +S GG A I+ Q FI L Y
Sbjct: 101 LMIFEHFKFQSYLLCVHSIGGFAALQIMNQSSK-ACLGFIGLEPTTVMIY 149
>1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1
interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23
Length = 210
Score = 33.4 bits (76), Expect = 0.058
Identities = 22/161 (13%), Positives = 50/161 (31%), Gaps = 8/161 (4%)
Query: 5 RPVLVIHGILSGNKTLEKFKERIERFHPGTKVVIPD----NYSNWASLEPMWNQVLFFGS 60
VL++HGI ++T + G + V D +S A+ ++
Sbjct: 33 FSVLLLHGIRFSSETWQNLGTLHRLAQAGYRAVAIDLPGLGHSKEAAAPAPIGELAPGSF 92
Query: 61 LVMKMSQNHPEGIHLIGYSQGGLIARGILEQFPNHNVRNFISLSSPHGGQYGSNQFGHFT 120
L + +I S G+ + L + F+ +P +
Sbjct: 93 LAAVVDALELGPPVVISPSLSGMYSLPFLTAPG-SQLPGFV-PVAPICTDKINAANYASV 150
Query: 121 EDESVVELRDTKMYTENSLGLRTLDKQGKLVLISVPGVDHF 161
+ +++ D + S +++++ G H
Sbjct: 151 KTPALIVYGDQDPMGQTSFEHLKQLPNHRVLIM--KGAGHP 189
>2zyr_A Lipase, putative; fatty acid, hydrolase; HET: 1PE; 1.77A
{Archaeoglobus fulgidus} PDB: 2zys_A* 2zyi_A* 2zyh_A*
Length = 484
Score = 33.4 bits (75), Expect = 0.088
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 73 IHLIGYSQGGLIARGILEQFPNH--NVRNFISLSSPHGG 109
+ L+G+S G + P V + I L G
Sbjct: 130 VDLVGHSMGTFFLVRYVNSSPERAAKVAHLILLDGVWGV 168
>1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta
hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP:
c.69.1.29 PDB: 1r1d_A* 4diu_A
Length = 247
Score = 32.8 bits (75), Expect = 0.091
Identities = 18/110 (16%), Positives = 35/110 (31%), Gaps = 16/110 (14%)
Query: 5 RPVLVIHGILSGNKTLEKFKERIERFHPGTKVVIPDNY--------SNWASLEPMWNQVL 56
R VL++HG + + +E G P + W V+
Sbjct: 17 RAVLLLHGFTGNSADVRMLGRFLESK--GYTCHAPIYKGHGVPPEELVHTGPDDWWQDVM 74
Query: 57 FFGSLVMKMSQNHPEGIHLIGYSQGGLIARGILEQFPNHNVRNFISLSSP 106
+ E I + G S GG+ + + P + +++ +P
Sbjct: 75 NG---YEFLKNKGYEKIAVAGLSLGGVFSLKLGYTVP---IEGIVTMCAP 118
>3hc7_A Gene 12 protein, GP12; alpha/beta sandwich, cell adhesion; 2.00A
{Mycobacterium phage D29}
Length = 254
Score = 32.4 bits (73), Expect = 0.12
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Query: 46 ASLEPMWNQVL-----FFGSLVMKMSQNHPEGIHLIGYSQGGLIARGILEQF 92
A+ PMW V + +K+ + + GYSQG ++ +L+
Sbjct: 44 AAAFPMWPSVEKGVAELILQIELKLDADPYADFAMAGYSQGAIVVGQVLKHH 95
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 32.9 bits (75), Expect = 0.15
Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 8/81 (9%)
Query: 5 RPVLVIHGILSGNKTLEKFKERIERFHPGTKVVIPDNYSNWASLEPMWNQVLFFGSLVMK 64
RP+ ++H I ++ G + + SL ++ + +
Sbjct: 2243 RPLFLVHPIEGSITVFHGLAAKLSIPTYGLQCTGAAPLDSIQSL------ASYYIECIRQ 2296
Query: 65 MSQNHPEGIHLIGYSQGGLIA 85
+ P + GYS G +A
Sbjct: 2297 VQPEGP--YRIAGYSYGACVA 2315
>2qs9_A Retinoblastoma-binding protein 9; B5T overexpressed gene protein,
BOG, RBBP9, RBBP10, HR2978, NESG, structural genomics,
PSI-2; 1.72A {Homo sapiens}
Length = 194
Score = 31.6 bits (71), Expect = 0.18
Identities = 27/193 (13%), Positives = 57/193 (29%), Gaps = 31/193 (16%)
Query: 1 MKRYRPVLVIHGILSGNKTLEKFKERIERF---HPGTKVVIPDNYSNWASLEPMWNQVLF 57
M +++ G G+ T + +++ PG + + + + E +W +
Sbjct: 1 MASPSKAVIVPGNGGGDVTTHGWYGWVKKELEKIPGFQCLAKNMPDPITARESIWLPFM- 59
Query: 58 FGSLVMKMSQNHPEGIHLIGYSQGGLIARGILEQFPNHNVRNFISLSSPHGGQYGSNQFG 117
+ + E +IG+S G + A E H V + +S+ N+
Sbjct: 60 ------ETELHCDEKTIIIGHSSGAIAAMRYAET---HRVYAIVLVSAYTSDLGDENERA 110
Query: 118 HFTEDES---------------VVELRDTKMYTENSLGLRTLDKQGKLVLISVPGVDHFQ 162
D + + + + + + L HFQ
Sbjct: 111 SGYFTRPWQWEKIKANCPYIVQFGSTDDPFLPWKEQ---QEVADRLETKLHKFTDCGHFQ 167
Query: 163 WHNNPTVIDQHKS 175
+I KS
Sbjct: 168 NTEFHELITVVKS 180
>1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 1.60A {Thermus thermophilus} SCOP:
c.69.1.27
Length = 238
Score = 31.6 bits (71), Expect = 0.21
Identities = 36/198 (18%), Positives = 58/198 (29%), Gaps = 51/198 (25%)
Query: 7 VLVIHGILSGNKTLEKFKERIERFHP-GTKVVIPDN------------YSNWASLEPMWN 53
+L +HG L G+K E + + G ++ D + +E ++
Sbjct: 27 LLALHG-LQGSK--EHILALLPGYAERGFLLLAFDAPRHGEREGPPPSSKSPRYVEEVYR 83
Query: 54 QVLFFGSLVMKMSQNHPEG----IHLIGYSQGGLIARGILEQFPN-HNVRNFISLSSP-- 106
L F ++++ + L G S G +A +L + V FI P
Sbjct: 84 VALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGFRPRGVLAFIGSGFPMK 143
Query: 107 ----------------------HGGQYG--SNQFGHFTEDESVVELRDTKMYTENSLGLR 142
G YG H + D V R K LR
Sbjct: 144 LPQGQVVEDPGVLALYQAPPATRGEAYGGVPLLHLHGSRDHIVPLARMEKTLEA----LR 199
Query: 143 TLDKQGKLVLISVPGVDH 160
+G+L G H
Sbjct: 200 PHYPEGRLARFVEEGAGH 217
>1iup_A META-cleavage product hydrolase; aromatic compounds, cumene,
isopropylbenzene, META-cleavage compound hydrolase;
1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB:
1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A
2d0d_A
Length = 282
Score = 31.2 bits (71), Expect = 0.32
Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 17/119 (14%)
Query: 6 PVLVIHGILSGNKTLEKFKERIERFHPGTKVVIPD----NYS-----NWASLEPMWNQVL 56
PV++IHG G ++ I +V+ PD ++ S + + ++
Sbjct: 27 PVILIHGSGPGVSAYANWRLTIPALSKFYRVIAPDMVGFGFTDRPENYNYSKDSWVDHII 86
Query: 57 FFGSLVMKMSQNHPEGIHLIGYSQGGLIARGILEQFPNHNVRNFISLSSPHGGQYGSNQ 115
M E H++G + GG +A ++ V + L G ++ +
Sbjct: 87 GI------MDALEIEKAHIVGNAFGGGLAIATALRYS-ERVDRMV-LMGAAGTRFDVTE 137
>3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A
{Escherichia coli} PDB: 3bf8_A
Length = 255
Score = 30.8 bits (70), Expect = 0.40
Identities = 14/96 (14%), Positives = 30/96 (31%), Gaps = 16/96 (16%)
Query: 6 PVLVIHGILSGNKTLEKFKERIERFHPGTKVVIPDN----YSNWA---SLEPMWNQVLFF 58
P++++HG+ L + H ++ D S + M ++
Sbjct: 18 PIVLVHGLFGSLDNLGVLARDLVNDHN---IIQVDVRNHGLSPREPVMNYPAMAQDLVDT 74
Query: 59 GSLVMKMSQNHPEGIHLIGYSQGGLIARGILEQFPN 94
+ + IG+S GG + P+
Sbjct: 75 ------LDALQIDKATFIGHSMGGKAVMALTALAPD 104
>3dcn_A Cutinase, cutin hydrolase; catalytic triad, secreted, serine
esterase; 1.90A {Glomerella cingulata} PDB: 3dd5_A
3dea_A*
Length = 201
Score = 30.8 bits (69), Expect = 0.40
Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 4/55 (7%)
Query: 60 SLVMKMSQNHPE-GIHLIGYSQGGLIARGILEQFPN---HNVRNFISLSSPHGGQ 110
L + P I GYSQG + G + + ++ + Q
Sbjct: 93 RLFTLANTKCPNAAIVSGGYSQGTAVMAGSISGLSTTIKNQIKGVVLFGYTKNLQ 147
>1xkl_A SABP2, salicylic acid-binding protein 2; alpha-beta protein,
structural genomics, protein structure initiative, PSI;
HET: STH; 2.00A {Nicotiana tabacum} SCOP: c.69.1.20 PDB:
1y7i_A* 1y7h_A*
Length = 273
Score = 30.7 bits (69), Expect = 0.44
Identities = 29/146 (19%), Positives = 54/146 (36%), Gaps = 13/146 (8%)
Query: 1 MKRYRPVLVIHGILSGNKTLEKFKERIERFHPGTKVVIPDNYSNWASLEPMWNQVLFFG- 59
MK + +++HG G + K K +E G KV D ++ L + +
Sbjct: 1 MKEGKHFVLVHGACHGGWSWYKLKPLLEA--AGHKVTALDLAASGTDLRKIEELRTLYDY 58
Query: 60 -----SLVMKMSQNHPEGIHLIGYSQGGLIARGILEQFPNHNVR--NFISLSSPHGGQYG 112
L+ +S + + L+G+S GG+ +E++P + F++ P
Sbjct: 59 TLPLMELMESLSADEK--VILVGHSLGGMNLGLAMEKYP-QKIYAAVFLAAFMPDSVHNS 115
Query: 113 SNQFGHFTEDESVVELRDTKMYTENS 138
S + E DT+ S
Sbjct: 116 SFVLEQYNERTPAENWLDTQFLPYGS 141
>3og9_A Protein YAHD A copper inducible hydrolase; alpha/beta hydrolase,
copper homeostasis, malic acid; 1.88A {Lactococcus
lactis subsp}
Length = 209
Score = 30.1 bits (68), Expect = 0.61
Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Query: 38 IPDNYSNWASLEPMWNQVLFFGSLVMKMSQNHPEGIHLIGYSQGGLIARGILEQFPNHNV 97
+ SL+ + + SL+ + + IGYS G +A + + N
Sbjct: 69 FTKENFDLESLDEETDWLTDEVSLLAEKHDLDVHKMIAIGYSNGANVALNMFLRGKI-NF 127
Query: 98 RNFISLS 104
I+
Sbjct: 128 DKIIAFH 134
>1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13
Length = 305
Score = 30.0 bits (67), Expect = 0.75
Identities = 13/94 (13%), Positives = 28/94 (29%), Gaps = 16/94 (17%)
Query: 2 KRYRPVLVIHGILSGNKTLEKFKERIERFHP-GTKVVIPDNYSNW---------ASLEPM 51
+ +L+ G + + F E G V D+ + ++
Sbjct: 33 FKNNTILIASG-FARRM--DHFAGLAEYLSTNGFHVFRYDSLHHVGLSSGSIDEFTMTTG 89
Query: 52 WNQVLFFGSLVMKMSQNHPEGIHLIGYSQGGLIA 85
N + ++ + + I LI S +A
Sbjct: 90 KNSLC---TVYHWLQTKGTQNIGLIAASLSARVA 120
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.75
Identities = 4/32 (12%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 18 KTLEKFKERIERFHPGTKVVIPDNYSNWASLE 49
+ L+K + ++ + + + A++E
Sbjct: 20 QALKKLQASLKLYADDSAPALAIK----ATME 47
>3b5e_A MLL8374 protein; NP_108484.1, carboxylesterase, structural
genomics, joint CE structural genomics, JCSG, protein
structure initiative; 1.75A {Mesorhizobium loti} SCOP:
c.69.1.14
Length = 223
Score = 29.9 bits (67), Expect = 0.79
Identities = 12/67 (17%), Positives = 20/67 (29%), Gaps = 1/67 (1%)
Query: 38 IPDNYSNWASLEPMWNQVLFFGSLVMKMSQNHPEGIHLIGYSQGGLIARGILEQFPNHNV 97
I S+ F + K + + +GYS G + ++ P V
Sbjct: 78 IDPTRFEQKSILAETAAFAAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLMLLHPG-IV 136
Query: 98 RNFISLS 104
R L
Sbjct: 137 RLAALLR 143
>3aja_A Putative uncharacterized protein; alpha-beta hydrolase, serine
esterase, cutinase, lipase, HYD; 2.90A {Mycobacterium
smegmatis}
Length = 302
Score = 29.9 bits (66), Expect = 0.99
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 60 SLVMKMSQNHPEG-IHLIGYSQGGLIARGILEQFPN 94
+ M+ P + G+SQG +IA I N
Sbjct: 121 KAMTDMNDRCPLTSYVIAGFSQGAVIAGDIASDIGN 156
>2czq_A Cutinase-like protein; alpha/beta hydrolase fold, hydrolase; HET:
CIT; 1.05A {Cryptococcus SP}
Length = 205
Score = 29.3 bits (65), Expect = 1.1
Identities = 9/36 (25%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 60 SLVMKMSQNHPEG-IHLIGYSQGGLIARGILEQFPN 94
+ +P L GYSQG L+Q
Sbjct: 65 RRINSGLAANPNVCYILQGYSQGAAATVVALQQLGT 100
>1j1i_A META cleavage compound hydrolase; carbazole degradation, META
cleavage product hydrolase, histidine tagged protein,
alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP:
c.69.1.10
Length = 296
Score = 29.3 bits (66), Expect = 1.2
Identities = 16/93 (17%), Positives = 36/93 (38%), Gaps = 7/93 (7%)
Query: 6 PVLVIHGILSGNKTLEKFKERIERFHPGTKVVIPD----NYSNWASLE-PMWNQVLFFGS 60
PV++IHG +G ++ ++ I +V+ D + +E ++
Sbjct: 38 PVILIHGGGAGAESEGNWRNVIPILARHYRVIAMDMLGFGKTAKPDIEYTQDRRIRHLHD 97
Query: 61 LVMKMSQNHPEGIHLIGYSQGGLIARGILEQFP 93
+ M+ + + ++G S GG G+
Sbjct: 98 FIKAMNFDGK--VSIVGNSMGGATGLGVSVLHS 128
>3tej_A Enterobactin synthase component F; nonribosomal peptide,
thioesterase, carrier domain, ATP- BIN enterobactin
biosynthesis, ION transport, iron; HET: UF0; 1.90A
{Escherichia coli} PDB: 2roq_A
Length = 329
Score = 29.3 bits (66), Expect = 1.3
Identities = 9/18 (50%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 69 HPEG-IHLIGYSQGGLIA 85
P G +L+GYS GG +A
Sbjct: 163 QPHGPYYLLGYSLGGTLA 180
>2cb9_A Fengycin synthetase; thioesterase, non-ribosomal peptide
synthesis, alpha/beta- hydrolases, catalytic triade,
hydrolase; 1.8A {Bacillus subtilis} PDB: 2cbg_A*
Length = 244
Score = 29.0 bits (65), Expect = 1.5
Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 69 HPEG-IHLIGYSQGGLIA 85
PEG L+GYS GG +A
Sbjct: 74 QPEGPYVLLGYSAGGNLA 91
>1jmk_C SRFTE, surfactin synthetase; thioesterase, non-ribosomal peptide
synthesis, alpha-beta hydrolase, cyclic peptide; 1.71A
{Bacillus subtilis} SCOP: c.69.1.22
Length = 230
Score = 29.0 bits (65), Expect = 1.5
Identities = 9/18 (50%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 69 HPEG-IHLIGYSQGGLIA 85
PEG + L GYS G +A
Sbjct: 68 QPEGPLTLFGYSAGCSLA 85
>2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold,
structural genomics, joint cente structural genomics,
JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2
Length = 262
Score = 29.1 bits (65), Expect = 1.6
Identities = 27/207 (13%), Positives = 51/207 (24%), Gaps = 60/207 (28%)
Query: 5 RPVLV-IHG--ILSGNKTLEKFKERIERFHP-GTKVVIPDN-YSNWASLEPMWNQVLFFG 59
+ V +HG ++ +K + G V +P + + Q+
Sbjct: 63 VGLFVFVHGGYWMAFDK--SSWSHLAVGALSKGWAVAMPSYELCPEVRISEITQQI---S 117
Query: 60 SLVMKMSQNHPEGIHLIGYSQGG-----LIARGILEQFPNHNVRNFISLSSPHGGQYGSN 114
V ++ I L G+S GG ++ +L + +RN + +S +
Sbjct: 118 QAVTAAAKEIDGPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISPLSDLRPLLR 177
Query: 115 QFGHFT-----------------------------EDESVVELRDTKMYTENSLGLRTLD 145
+ E L E D
Sbjct: 178 TSMNEKFKMDADAAIAESPVEMQNRYDAKVTVWVGGAERPAFLDQAIWLVE------AWD 231
Query: 146 KQGKLVLISVPGVDHFQWHNNPTVIDQ 172
+ HF VI+
Sbjct: 232 ADHVI----AFEKHHF------NVIEP 248
>4fle_A Esterase; structural genomics, PSI-biology, northeast structural
genom consortium, NESG, alpha-beta protein, rossmann
fold, HY; 2.10A {Yersinia enterocolitica subsp}
Length = 202
Score = 28.5 bits (63), Expect = 2.0
Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 13/94 (13%)
Query: 7 VLVIHGILS--GNKTLEKFKERIERFHPGTKVVIPD-NYSNWASLEPMWNQVLFFGSLVM 63
+L IHG S + FK +++ HP ++ IP + E L
Sbjct: 5 LLYIHGFNSSPSSAKATTFKSWLQQHHPHIEMQIPQLPPYPAEAAE----------MLES 54
Query: 64 KMSQNHPEGIHLIGYSQGGLIARGILEQFPNHNV 97
+ + I ++G S GG A + ++F V
Sbjct: 55 IVMDKAGQSIGIVGSSLGGYFATWLSQRFSIPAV 88
>2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct
initiative, midwest center for structural genomics,
MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP:
c.69.1.14
Length = 226
Score = 28.6 bits (64), Expect = 2.2
Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 1/67 (1%)
Query: 38 IPDNYSNWASLEPMWNQVLFFGSLVMKMSQNHPEGIHLIGYSQGGLIARGILEQFPNHNV 97
+ + + L ++ F K + I IGYS G IA +L + N +
Sbjct: 86 LAEGIFDEEDLIFRTKELNEFLDEAAKEYKFDRNNIVAIGYSNGANIAASLLFHYEN-AL 144
Query: 98 RNFISLS 104
+ +
Sbjct: 145 KGAVLHH 151
>1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics,
PSI, protei structure initiative; HET: MSE 3OH; 1.70A
{Escherichia coli} SCOP: c.69.1.26
Length = 258
Score = 28.4 bits (64), Expect = 2.2
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 70 PEGIHLIGYSQGGLIARGILEQFP 93
P+ +G+S GGL+A I P
Sbjct: 73 PDKAIWLGWSLGGLVASQIALTHP 96
>2px6_A Thioesterase domain; thioesaterse domain, orlistat, fatty acid
synthase, drug complex, tetrahydrolipstatin,
transferase; HET: DH9; 2.30A {Homo sapiens}
Length = 316
Score = 28.7 bits (64), Expect = 2.3
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 62 VMKMSQNHPEG-IHLIGYSQGGLIA 85
+ + Q PEG + GYS G +A
Sbjct: 95 IDCIRQVQPEGPYRVAGYSYGACVA 119
>2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK;
1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A*
2wug_A* 2vf2_A
Length = 291
Score = 28.4 bits (64), Expect = 2.3
Identities = 16/89 (17%), Positives = 25/89 (28%), Gaps = 15/89 (16%)
Query: 6 PVLVIHGILSGNKTLEKFKERIERFHPGTKVVIPD----NYS----NWASLEPMWNQVLF 57
V+++HG G + F I V+ D +S L
Sbjct: 38 TVVLLHGGGPGAASWTNFSRNIAVLARHFHVLAVDQPGYGHSDKRAEHGQFNRYAAMALK 97
Query: 58 -FGSLVMKMSQNHPEGIHLIGYSQGGLIA 85
Q + L+G + GG A
Sbjct: 98 GL------FDQLGLGRVPLVGNALGGGTA 120
>2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond
hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia
xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A*
3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A
Length = 286
Score = 28.5 bits (64), Expect = 2.4
Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 16/98 (16%)
Query: 6 PVLVIHGILSGNKTLEKFKERI-----ERFHPGTKVVIPDN----YSNWASLEPMWNQVL 56
V+++HG G + + + V++ D+ S+ ++ L
Sbjct: 35 TVIMLHGGGPGAGGWSNYYRNVGPFVDAGYR----VILKDSPGFNKSDAVVMDEQR--GL 88
Query: 57 FFGSLVMK-MSQNHPEGIHLIGYSQGGLIARGILEQFP 93
V M + HL+G + GG A ++P
Sbjct: 89 VNARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYP 126
>1r3d_A Conserved hypothetical protein VC1974; structural genomics,
hydrolase, NYSGXRC, NEW YORK SGX research center for
structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP:
c.69.1.35
Length = 264
Score = 28.4 bits (64), Expect = 2.5
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 73 IHLIGYSQGGLIARGILEQFPNHNVR 98
+ L+GYS GG + L Q +
Sbjct: 86 VILVGYSLGGRLIMHGLAQGAFSRLN 111
>1auo_A Carboxylesterase; hydrolase; 1.80A {Pseudomonas fluorescens} SCOP:
c.69.1.14 PDB: 1aur_A*
Length = 218
Score = 28.2 bits (63), Expect = 2.6
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 70 PEGIHLIGYSQGGLIARGILEQFPNHNVRNFISLSS 105
I L G+SQGG + + I+LS+
Sbjct: 105 ASRIFLAGFSQGGAVVFHTAFINWQGPLGGVIALST 140
>3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad,
rotation; 1.60A {Lactobacillus rhamnosus} PDB: 3dlt_A
3dyi_A 3dyv_A 3e1g_A
Length = 251
Score = 28.3 bits (63), Expect = 2.7
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 67 QNHPEGIHLIGYSQGGLIARGILEQFPNHNVRNFISLSSP 106
+ + G S GG+ A LE P + SSP
Sbjct: 89 TAKYAKVFVFGLSLGGIFAMKALETLP--GITAGGVFSSP 126
>3c6x_A Hydroxynitrilase; atomic resolution, hydroxynitril lyase,
catalysis, protonation state, AB initio calculations,
substrate bindin; 1.05A {Hevea brasiliensis} SCOP:
c.69.1.20 PDB: 1sc9_A 1yas_A* 2g4l_A* 2yas_A 1qj4_A
3c6y_A 3c6z_A 3c70_A 3yas_A 4yas_A 5yas_A* 6yas_A
7yas_A* 1yb6_A* 1yb7_A 1sck_A 1sci_A 1scq_A 1dwo_A
1dwp_A ...
Length = 257
Score = 28.1 bits (62), Expect = 2.8
Identities = 25/120 (20%), Positives = 40/120 (33%), Gaps = 8/120 (6%)
Query: 7 VLVIHGILSGNKTLEKFKERIERFHPGTKVVIPDNYSNWASLEPMWNQVLF--FGSLVMK 64
VL+ H I G K K +E G KV D ++ + F + ++
Sbjct: 7 VLI-HTICHGAWIWHKLKPLLEA--LGHKVTALDLAASGVDPRQIEEIGSFDEYSEPLLT 63
Query: 65 MSQNHPEG--IHLIGYSQGGLIARGILEQFPNH-NVRNFISLSSPHGGQYGSNQFGHFTE 121
+ P G + L+G S GGL +++ F + P S E
Sbjct: 64 FLEALPPGEKVILVGESCGGLNIAIAADKYCEKIAAAVFHNSVLPDTEHCPSYVVDKLME 123
>3tjm_A Fatty acid synthase; thioesterase domain, fatty acid synthesis,
hydrolase-hydrola inhibitor complex; HET: 7FA; 1.48A
{Homo sapiens} PDB: 1xkt_A
Length = 283
Score = 28.3 bits (63), Expect = 2.8
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 62 VMKMSQNHPEG-IHLIGYSQGGLIA 85
+ + Q PEG + GYS G +A
Sbjct: 73 IDCIRQVQPEGPYRVAGYSYGACVA 97
>3d02_A Putative LACI-type transcriptional regulator; periplasmic
sugar-binding protein, structura genomics; HET: MSE GOL;
1.30A {Klebsiella pneumoniae subsp}
Length = 303
Score = 28.1 bits (63), Expect = 3.0
Identities = 5/42 (11%), Positives = 11/42 (26%), Gaps = 3/42 (7%)
Query: 7 VLVIHGIL---SGNKTLEKFKERIERFHPGTKVVIPDNYSNW 45
++ G L N + + + +P V
Sbjct: 130 YVIYVGSLTVPQHNLWADLLVKYQKEHYPDMHEVTRRMPVAE 171
>3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase,
cinnamoyl/Fe esterase, hydroxycinammates, extracellular;
HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A*
3pfc_A* 3s2z_A* 3pf8_A 3qm1_A*
Length = 270
Score = 27.8 bits (62), Expect = 3.4
Identities = 16/100 (16%), Positives = 37/100 (37%), Gaps = 13/100 (13%)
Query: 66 SQNHPEGIHLIGYSQGGLIARGILEQFPNHNVRNFISLSSP---------HGGQYGSNQF 116
+ H I+L+G++QGG++A + +P+ ++ + L+ Q +
Sbjct: 114 TDPHVRNIYLVGHAQGGVVASMLAGLYPD-LIKKVVLLAPAATLKGDALEGNTQGVTYNP 172
Query: 117 GHFTEDESVVELRDTKMYTENSLGLRTLDKQGKL---VLI 153
H + +L Y + L + + V +
Sbjct: 173 DHIPDRLPFKDLTLGGFYLRIAQQLPIYEVSAQFTKPVCL 212
>3lcr_A Tautomycetin biosynthetic PKS; alpha-beta hydrolase, thioesterase,
polyketide synthase, phosphopantetheine, transferase,
hydrolase; 2.00A {Streptomyces SP}
Length = 319
Score = 27.9 bits (62), Expect = 3.7
Identities = 7/17 (41%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
Query: 70 PEG-IHLIGYSQGGLIA 85
+G L G+S GG++A
Sbjct: 146 ADGEFALAGHSSGGVVA 162
>3ils_A PKS, aflatoxin biosynthesis polyketide synthase; A/B hydrolase,
thioesterase, norsolorinic acid, P polyketide,
acyltransferase; 1.70A {Aspergillus parasiticus}
Length = 265
Score = 27.9 bits (62), Expect = 4.0
Identities = 9/18 (50%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 69 HPEG-IHLIGYSQGGLIA 85
P G HL G+S GG A
Sbjct: 82 QPRGPYHLGGWSSGGAFA 99
>2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE PGE; 1.96A {Bacillus subtilis}
Length = 306
Score = 27.7 bits (62), Expect = 4.0
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 71 EGIHLIGYSQGGLIARGILEQFP 93
E H+IG S GGL L + P
Sbjct: 134 EKSHMIGLSLGGLHTMNFLLRMP 156
>1q0r_A RDMC, aclacinomycin methylesterase; anthracycline, hydrolase,
polyketide, tailoring enzyme, structural proteomics in
europe, spine; HET: AKT 1PE; 1.45A {Streptomyces
purpurascens} SCOP: c.69.1.28 PDB: 1q0z_A*
Length = 298
Score = 27.9 bits (62), Expect = 4.3
Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 74 HLIGYSQGGLIARGILEQFPNHNVRNFISLSSPHGG 109
H++G S G I + I + + L
Sbjct: 97 HVVGLSMGATITQVIALDHH-DRLSSLTMLLGGGLD 131
>3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase,
hydrolase; 1.90A {Mycobacterium tuberculosis} PDB:
3e3a_A 3hys_A 3hzo_A
Length = 293
Score = 27.7 bits (62), Expect = 4.8
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 74 HLIGYSQGGLIARGILEQFP 93
++G S G IA+ ++ P
Sbjct: 113 RVVGVSMGAFIAQELMVVAP 132
>3v48_A Aminohydrolase, putative aminoacrylate hydrolase RUTD; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.10A {Escherichia coli SE11}
Length = 268
Score = 27.6 bits (62), Expect = 5.3
Identities = 4/20 (20%), Positives = 11/20 (55%)
Query: 74 HLIGYSQGGLIARGILEQFP 93
++G++ G L+ + +P
Sbjct: 85 AVVGHALGALVGMQLALDYP 104
>3dhf_A Nicotinamide phosphoribosyltransferase; NMPRTASE, NAMPRTASE,
visfatin, beryllium fluoride, nicotinamide
D-ribonucleotide, pyrophosphate; HET: NMN; 1.80A {Homo
sapiens} PDB: 3dgr_A* 3dhd_A* 3dkj_A* 3dkl_A* 2gvj_A*
2gvg_A* 2e5b_A 2e5c_A* 2e5d_A 2h3d_A* 2gvl_A 2h3b_A
2g95_A 2g96_A* 2g97_A* 3g8e_A*
Length = 484
Score = 27.8 bits (61), Expect = 5.6
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 20 LEKFKERIERFHPGTKVVIPDNYSNWASLEPMWNQVL 56
+ F+ + +F V+ D+Y + + E +W + L
Sbjct: 259 KDAFEHIVTQFSSVPVSVVSDSYDIYNACEKIWGEDL 295
>2i3d_A AGR_C_3351P, hypothetical protein ATU1826; structural genomics,
APC5865, hydrolase, PSI-2, protein STRU initiative; HET:
MSE; 1.50A {Agrobacterium tumefaciens str} SCOP:
c.69.1.36
Length = 249
Score = 27.2 bits (59), Expect = 6.3
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 258 KQGKLVLISVPGVDHFQWHNNPTVIDQHVLPYLD 291
K + ++PG +HF ++ + YLD
Sbjct: 198 KGILITHRTLPGANHF-FNGKVDELMGECEDYLD 230
>2fuk_A XC6422 protein; A/B hydrolase, structural genomics, X-RAY
diffraction; 1.60A {Xanthomonas campestris} SCOP:
c.69.1.36
Length = 220
Score = 26.8 bits (58), Expect = 7.3
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 10/70 (14%)
Query: 222 PWQSSQFGHFTEDESVVELRDTKMYTKNSLGLRTLDKQGKLVLISVPGVDHFQWHNNPTV 281
P DE +V+ + + L TL++Q LV + P HF +H
Sbjct: 154 PPAQWLVIQGDADE-IVDPQAVYDW------LETLEQQPTLVRM--PDTSHF-FHRKLID 203
Query: 282 IDQHVLPYLD 291
+ + +
Sbjct: 204 LRGALQHGVR 213
>3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG;
HET: MES; 2.25A {Pseudomonas aeruginosa}
Length = 266
Score = 26.8 bits (60), Expect = 7.6
Identities = 6/35 (17%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 74 HLIGYSQGGLIARGILEQFPNHNVRNFISLSSPHG 108
H +G S GG++ + + P + + ++
Sbjct: 96 HFLGLSLGGIVGQWLALHAPQR-IERLVLANTSAW 129
>1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat hydrolase);
PCB degradation; 2.40A {Rhodococcus SP} SCOP: c.69.1.10
Length = 285
Score = 26.9 bits (60), Expect = 8.3
Identities = 18/93 (19%), Positives = 30/93 (32%), Gaps = 19/93 (20%)
Query: 6 PVLVIHGILSGNKTLEKFKERIERFHPGTKVVIPD-------------NYSNWASLEPMW 52
V+++HG G ++ I VV PD + +
Sbjct: 31 AVVLLHGAGPGAHAASNWRPIIPDLAENFFVVAPDLIGFGQSEYPETYPGHIMSWVGMRV 90
Query: 53 NQVLFFGSLVMKMSQNHPEGIHLIGYSQGGLIA 85
Q+L M+ E H++G S GG +
Sbjct: 91 EQILGL------MNHFGIEKSHIVGNSMGGAVT 117
>2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol metabolism;
1.90A {Burkholderia xenovorans}
Length = 266
Score = 26.8 bits (60), Expect = 8.3
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 74 HLIGYSQGGLIARGILEQFP 93
+ G S GGL + +
Sbjct: 95 NFCGLSMGGLTGVALAARHA 114
>3cn9_A Carboxylesterase; alpha/beta hydrolase fold super-family,
hydrolase; HET: 2PE; 2.09A {Pseudomonas aeruginosa} PDB:
3cn7_A*
Length = 226
Score = 26.6 bits (59), Expect = 8.9
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 70 PEGIHLIGYSQGGLIARGILEQFPNHNVRNFISLS 104
E I L G+SQGG + + + ++LS
Sbjct: 115 AERIILAGFSQGGAVVLHTAFRRYAQPLGGVLALS 149
>2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase,
putative lipase; HET: CME CSO; 1.90A {Saccharomyces
cerevisiae} PDB: 2y6v_A*
Length = 398
Score = 27.0 bits (59), Expect = 9.0
Identities = 14/66 (21%), Positives = 21/66 (31%)
Query: 29 RFHPGTKVVIPDNYSNWASLEPMWNQVLFFGSLVMKMSQNHPEGIHLIGYSQGGLIARGI 88
H + V + VL + + +HP +IG+S GG A
Sbjct: 95 VNHGDSAVRNRGRLGTNFNWIDGARDVLKIATCELGSIDSHPALNVVIGHSMGGFQALAC 154
Query: 89 LEQFPN 94
PN
Sbjct: 155 DVLQPN 160
>1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida}
PDB: 4dgq_A
Length = 276
Score = 26.5 bits (59), Expect = 9.9
Identities = 7/35 (20%), Positives = 16/35 (45%)
Query: 71 EGIHLIGYSQGGLIARGILEQFPNHNVRNFISLSS 105
+G +G+S GG + + P V + +++
Sbjct: 89 QGAVHVGHSTGGGEVVRYMARHPEDKVAKAVLIAA 123
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.427
Gapped
Lambda K H
0.267 0.0518 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,525,951
Number of extensions: 261137
Number of successful extensions: 945
Number of sequences better than 10.0: 1
Number of HSP's gapped: 921
Number of HSP's successfully gapped: 92
Length of query: 291
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 198
Effective length of database: 4,105,140
Effective search space: 812817720
Effective search space used: 812817720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.2 bits)