BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17149
(98 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3H5Q|A Chain A, Crystal Structure Of A Putative Pyrimidine-Nucleoside
Phosphorylase From Staphylococcus Aureus
Length = 436
Score = 28.9 bits (63), Expect = 0.83, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 36 VENKSIQDYIKESENIVELHYQIQDCDNILEM---------SVLPPVLFHSIET 80
V NK I D ++E E+++ +H QD D++++ V+ P L H I T
Sbjct: 382 VLNKKIGDKVEEGESLLTIHSNRQDVDDVVKKLDSSITIADHVVSPTLIHKIIT 435
>pdb|1MIQ|A Chain A, Crystal Structure Of Proplasmepsin From The Human
Malarial Pathogen Plasmodium Vivax
pdb|1MIQ|B Chain B, Crystal Structure Of Proplasmepsin From The Human
Malarial Pathogen Plasmodium Vivax
Length = 375
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 27 KQVEKELKDVENKSIQDYIKESENIVELHYQIQDC----DNILEMSVLPPVLFHS 77
+ +K LK + K++++YIKE+ N + Y Q+ ++++E+ + ++F+
Sbjct: 12 RPYDKVLKTISKKNLKNYIKETFNFFKSGYMKQNYLGSENDVIELDDVANIMFYG 66
>pdb|1J1E|C Chain C, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|F Chain F, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
Length = 180
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 16 VKTGTDLRQYSKQVEKELKDVENKSIQDYIK 46
K DLR + KQV+KE + EN+ + D+ K
Sbjct: 133 AKESLDLRAHLKQVKKEDTEKENREVGDWRK 163
>pdb|1JRQ|A Chain A, X-Ray Structure Analysis Of The Role Of The Conserved
Tyrosine-369 In Active Site Of E. Coli Amine Oxidase
pdb|1JRQ|B Chain B, X-Ray Structure Analysis Of The Role Of The Conserved
Tyrosine-369 In Active Site Of E. Coli Amine Oxidase
Length = 727
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 7 LDDEIVQEVVKTGTDLRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNILE 66
+ D + +V ++G D + QVEK + N D IK++ IV+ + E
Sbjct: 70 VSDTFINDVFQSGLD---QTFQVEKRPHPL-NALTADEIKQAVEIVKASADFKPNTRFTE 125
Query: 67 MSVLPP 72
+S+LPP
Sbjct: 126 ISLLPP 131
>pdb|1OAC|A Chain A, Crystal Structure Of A Quinoenzyme: Copper Amine Oxidase
Of Escherichia Coli At 2 Angstroems Resolution
pdb|1OAC|B Chain B, Crystal Structure Of A Quinoenzyme: Copper Amine Oxidase
Of Escherichia Coli At 2 Angstroems Resolution
pdb|1SPU|A Chain A, Structure Of Oxidoreductase
pdb|1SPU|B Chain B, Structure Of Oxidoreductase
pdb|1D6U|A Chain A, Crystal Structure Of E. Coli Amine Oxidase Anaerobically
Reduced With Beta-Phenylethylamine
pdb|1D6U|B Chain B, Crystal Structure Of E. Coli Amine Oxidase Anaerobically
Reduced With Beta-Phenylethylamine
pdb|1D6Y|A Chain A, Crystal Structure Of E. Coli Copper-Containing Amine
Oxidase Anaerobically Reduced With Beta-Phenylethylamine
And Complexed With Nitric Oxide.
pdb|1D6Y|B Chain B, Crystal Structure Of E. Coli Copper-Containing Amine
Oxidase Anaerobically Reduced With Beta-Phenylethylamine
And Complexed With Nitric Oxide.
pdb|1D6Z|A Chain A, Crystal Structure Of The Aerobically Freeze Trapped
Rate-determining Catalytic Intermediate Of E. Coli
Copper-containing Amine Oxidase.
pdb|1D6Z|B Chain B, Crystal Structure Of The Aerobically Freeze Trapped
Rate-determining Catalytic Intermediate Of E. Coli
Copper-containing Amine Oxidase.
pdb|1DYU|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase: X-Ray Crystallographic
Studies With Mutational Variants.
pdb|1DYU|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase: X-Ray Crystallographic
Studies With Mutational Variants.
pdb|1LVN|A Chain A, Crystal Structure Of E. Coli Amine Oxidase Complexed With
Tranylcypromine
pdb|1LVN|B Chain B, Crystal Structure Of E. Coli Amine Oxidase Complexed With
Tranylcypromine
pdb|2W0Q|A Chain A, E. Coli Copper Amine Oxidase In Complex With Xenon
pdb|2W0Q|B Chain B, E. Coli Copper Amine Oxidase In Complex With Xenon
pdb|2WO0|A Chain A, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WO0|B Chain B, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WOF|A Chain A, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WOF|B Chain B, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WOH|A Chain A, Strontium Soaked E. Coli Copper Amine Oxidase
pdb|2WOH|B Chain B, Strontium Soaked E. Coli Copper Amine Oxidase
Length = 727
Score = 25.8 bits (55), Expect = 6.3, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 7 LDDEIVQEVVKTGTDLRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNILE 66
+ D + +V ++G D + QVEK + N D IK++ IV+ + E
Sbjct: 70 VSDTFINDVFQSGLD---QTFQVEKRPHPL-NALTADEIKQAVEIVKASADFKPNTRFTE 125
Query: 67 MSVLPP 72
+S+LPP
Sbjct: 126 ISLLPP 131
>pdb|2WGQ|A Chain A, Zinc Substituted E Coli Copper Amine Oxidase, A Model For
The Precursor For 2,4,5-Trihydroxyphenylalaninequinone
Formation
pdb|2WGQ|B Chain B, Zinc Substituted E Coli Copper Amine Oxidase, A Model For
The Precursor For 2,4,5-Trihydroxyphenylalaninequinone
Formation
Length = 727
Score = 25.8 bits (55), Expect = 6.3, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 7 LDDEIVQEVVKTGTDLRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNILE 66
+ D + +V ++G D + QVEK + N D IK++ IV+ + E
Sbjct: 70 VSDTFINDVFQSGLD---QTFQVEKRPHPL-NALTADEIKQAVEIVKASADFKPNTRFTE 125
Query: 67 MSVLPP 72
+S+LPP
Sbjct: 126 ISLLPP 131
>pdb|1QAK|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-ray Crystallographic
Studies With Mutational Variants
pdb|1QAK|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-ray Crystallographic
Studies With Mutational Variants
Length = 722
Score = 25.8 bits (55), Expect = 6.3, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 7 LDDEIVQEVVKTGTDLRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNILE 66
+ D + +V ++G D + QVEK + N D IK++ IV+ + E
Sbjct: 65 VSDTFINDVFQSGLD---QTFQVEKRPHPL-NALTADEIKQAVEIVKASADFKPNTRFTE 120
Query: 67 MSVLPP 72
+S+LPP
Sbjct: 121 ISLLPP 126
>pdb|1QAL|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
pdb|1QAL|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
Length = 721
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 7 LDDEIVQEVVKTGTDLRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNILE 66
+ D + +V ++G D + QVEK + N D IK++ IV+ + E
Sbjct: 65 VSDTFINDVFQSGLD---QTFQVEKRPHPL-NALTADEIKQAVEIVKASADFKPNTRFTE 120
Query: 67 MSVLPP 72
+S+LPP
Sbjct: 121 ISLLPP 126
>pdb|1QAF|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
pdb|1QAF|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
Length = 721
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 7 LDDEIVQEVVKTGTDLRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNILE 66
+ D + +V ++G D + QVEK + N D IK++ IV+ + E
Sbjct: 65 VSDTFINDVFQSGLD---QTFQVEKRPHPL-NALTADEIKQAVEIVKASADFKPNTRFTE 120
Query: 67 MSVLPP 72
+S+LPP
Sbjct: 121 ISLLPP 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.132 0.348
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,598,181
Number of Sequences: 62578
Number of extensions: 89338
Number of successful extensions: 336
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 329
Number of HSP's gapped (non-prelim): 29
length of query: 98
length of database: 14,973,337
effective HSP length: 64
effective length of query: 34
effective length of database: 10,968,345
effective search space: 372923730
effective search space used: 372923730
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)