BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17149
(98 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8C754|VPS52_MOUSE Vacuolar protein sorting-associated protein 52 homolog OS=Mus
musculus GN=Vps52 PE=2 SV=1
Length = 723
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 48/60 (80%)
Query: 7 LDDEIVQEVVKTGTDLRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNILE 66
L+DE+V+E +KTG DLR YSKQVE EL+ +E KSI+DYI+ESENI LH QI CD +LE
Sbjct: 65 LEDELVKEALKTGVDLRHYSKQVELELQQIEQKSIRDYIQESENIASLHNQITACDAVLE 124
>sp|Q5TJF0|VPS52_CANFA Vacuolar protein sorting-associated protein 52 homolog OS=Canis
familiaris GN=VPS52 PE=3 SV=1
Length = 723
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 48/60 (80%)
Query: 7 LDDEIVQEVVKTGTDLRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNILE 66
L+DE+V+E +KTG DLR YSKQVE EL+ +E KSI+DYI+ESENI LH QI CD +LE
Sbjct: 65 LEDELVKEALKTGVDLRHYSKQVELELQQIEQKSIRDYIQESENIASLHNQITACDAVLE 124
>sp|Q8N1B4|VPS52_HUMAN Vacuolar protein sorting-associated protein 52 homolog OS=Homo
sapiens GN=VPS52 PE=1 SV=1
Length = 723
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 48/60 (80%)
Query: 7 LDDEIVQEVVKTGTDLRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNILE 66
L+DE+V+E +KTG DLR YSKQVE EL+ +E KSI+DYI+ESENI LH QI CD +LE
Sbjct: 65 LEDELVKEALKTGVDLRHYSKQVELELQQIEQKSIRDYIQESENIASLHNQITACDAVLE 124
>sp|O55166|VPS52_RAT Vacuolar protein sorting-associated protein 52 homolog OS=Rattus
norvegicus GN=Vps52 PE=2 SV=2
Length = 723
Score = 80.5 bits (197), Expect = 3e-15, Method: Composition-based stats.
Identities = 39/60 (65%), Positives = 48/60 (80%)
Query: 7 LDDEIVQEVVKTGTDLRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNILE 66
L+DE+V+E +KTG DLR YSKQVE EL+ +E KSI+DYI+ESENI LH QI CD +LE
Sbjct: 65 LEDELVKEALKTGVDLRHYSKQVELELQQIEQKSIRDYIQESENIASLHNQITACDAVLE 124
>sp|G5EFV8|VPS52_CAEEL Vacuolar protein sorting-associated protein 52 homolog
OS=Caenorhabditis elegans GN=vps-52 PE=1 SV=2
Length = 702
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 8 DDEIVQEVVKTGTDLRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNILE 66
D +V++ + +G L + V L + S+Q + SE + +LH Q+ CDN+ E
Sbjct: 34 DPNLVKKAIASGDGLTESKNDVSTRLSEAHRYSVQQCLDNSEQLAQLHNQLVHCDNVFE 92
>sp|Q07RY4|BCHB_RHOP5 Light-independent protochlorophyllide reductase subunit B
OS=Rhodopseudomonas palustris (strain BisA53) GN=bchB
PE=3 SV=1
Length = 531
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 3 SSKLLDDEIVQEVVKTGTDLRQYSKQVEK--ELKDVENKSIQDYIKESENIVELHYQI 58
++++ DE+ +VV GT R++ +++ + +L DVE DY++ + ELH ++
Sbjct: 308 AARMASDEMGFKVVGLGTYSREFGREIREAAKLYDVEPLITDDYLEVEAKVAELHPEL 365
>sp|Q5HE64|PDP_STAAC Pyrimidine-nucleoside phosphorylase OS=Staphylococcus aureus
(strain COL) GN=pdp PE=1 SV=1
Length = 433
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 36 VENKSIQDYIKESENIVELHYQIQDCDNILEM---------SVLPPVLFHSIET 80
V NK I D ++E E+++ +H QD D++++ V+ P L H I T
Sbjct: 379 VLNKKIGDKVEEGESLLTIHSNRQDVDDVVKKLDSSITIADHVVSPTLIHKIIT 432
>sp|Q2FWC1|PDP_STAA8 Pyrimidine-nucleoside phosphorylase OS=Staphylococcus aureus
(strain NCTC 8325) GN=pdp PE=3 SV=1
Length = 433
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 36 VENKSIQDYIKESENIVELHYQIQDCDNILEM---------SVLPPVLFHSIET 80
V NK I D ++E E+++ +H QD D++++ V+ P L H I T
Sbjct: 379 VLNKKIGDKVEEGESLLTIHSNRQDVDDVVKKLDSSITIADHVVSPTLIHKIIT 432
>sp|Q2FEZ3|PDP_STAA3 Pyrimidine-nucleoside phosphorylase OS=Staphylococcus aureus
(strain USA300) GN=pdp PE=3 SV=2
Length = 433
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 36 VENKSIQDYIKESENIVELHYQIQDCDNILEM---------SVLPPVLFHSIET 80
V NK I D ++E E+++ +H QD D++++ V+ P L H I T
Sbjct: 379 VLNKKIGDKVEEGESLLTIHSNRQDVDDVVKKLDSSITIADHVVSPTLIHKIIT 432
>sp|Q7A4D0|PDP_STAAN Pyrimidine-nucleoside phosphorylase OS=Staphylococcus aureus
(strain N315) GN=pdp PE=1 SV=2
Length = 433
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 36 VENKSIQDYIKESENIVELHYQIQDCDNILEM---------SVLPPVLFHSIET 80
V NK I D ++E E+++ +H QD D++++ V+ P L H I T
Sbjct: 379 VLNKKIGDKVEEGESLLTIHSNRQDVDDVVKKLDSSITIADHVVSPTLIHKIIT 432
>sp|Q99SC3|PDP_STAAM Pyrimidine-nucleoside phosphorylase OS=Staphylococcus aureus
(strain Mu50 / ATCC 700699) GN=pdp PE=1 SV=2
Length = 433
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 36 VENKSIQDYIKESENIVELHYQIQDCDNILEM---------SVLPPVLFHSIET 80
V NK I D ++E E+++ +H QD D++++ V+ P L H I T
Sbjct: 379 VLNKKIGDKVEEGESLLTIHSNRQDVDDVVKKLDSSITIADHVVSPTLIHKIIT 432
>sp|Q2YUL7|PDP_STAAB Pyrimidine-nucleoside phosphorylase OS=Staphylococcus aureus
(strain bovine RF122 / ET3-1) GN=pdp PE=3 SV=1
Length = 433
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 36 VENKSIQDYIKESENIVELHYQIQDCDNILEM---------SVLPPVLFHSIET 80
V NK I D ++E E+++ +H QD D++++ V+ P L H I T
Sbjct: 379 VLNKKIGDKVEEGESLLTIHSNRQDVDDVVKKLDSSITIADHVVSPTLIHKIIT 432
>sp|Q8NVF6|PDP_STAAW Pyrimidine-nucleoside phosphorylase OS=Staphylococcus aureus
(strain MW2) GN=pdp PE=3 SV=2
Length = 433
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 9/52 (17%)
Query: 36 VENKSIQDYIKESENIVELHYQIQDCDNILEM---------SVLPPVLFHSI 78
V NK I D ++E E+++ +H QD D++++ V+ P L H I
Sbjct: 379 VLNKKIGDKVEEGESLLTIHSNRQDVDDVVKKLDSSITIADHVVSPTLIHKI 430
>sp|Q6G7H4|PDP_STAAS Pyrimidine-nucleoside phosphorylase OS=Staphylococcus aureus
(strain MSSA476) GN=pdp PE=3 SV=1
Length = 433
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 9/52 (17%)
Query: 36 VENKSIQDYIKESENIVELHYQIQDCDNILEM---------SVLPPVLFHSI 78
V NK I D ++E E+++ +H QD D++++ V+ P L H I
Sbjct: 379 VLNKKIGDKVEEGESLLTIHSNRQDVDDVVKKLDSSITIADHVVSPTLIHKI 430
>sp|Q6GET9|PDP_STAAR Pyrimidine-nucleoside phosphorylase OS=Staphylococcus aureus
(strain MRSA252) GN=pdp PE=3 SV=1
Length = 433
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 36 VENKSIQDYIKESENIVELHYQIQDCDNILEM---------SVLPPVLFHSIET 80
V NK I D ++E E+++ +H QD D++++ V+ P L H I T
Sbjct: 379 VLNKKIGDKVEEGESLLTIHSNRQDVDDVVKKLDSSITIADYVVSPTLIHKIIT 432
>sp|Q4L818|PDP_STAHJ Pyrimidine-nucleoside phosphorylase OS=Staphylococcus haemolyticus
(strain JCSC1435) GN=pdp PE=3 SV=1
Length = 433
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Query: 4 SKLLDDEIVQEVVKTGTDLRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDN 63
S+L+ +EI + G + +++ + V NK + D +KE E+++ +H ++ D+
Sbjct: 347 SELIANEIGVASMMLGAGRQTKEDEIDLSVGIVLNKKVGDVVKEGESLLTIHSNRENVDD 406
Query: 64 I---------LEMSVLPPVLFHSIET 80
+ ++ P L H I T
Sbjct: 407 VIKKLDESIEIQAQATTPTLIHKIIT 432
>sp|A8LF79|DISA_FRASN DNA integrity scanning protein DisA OS=Frankia sp. (strain EAN1pec)
GN=disA PE=3 SV=1
Length = 359
Score = 29.3 bits (64), Expect = 8.6, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 1 MESSKLLDDEIVQEVVKTGTDLRQYSKQVEKELKDVENK---SIQDYI 45
+E + + DEI VV+ GTD R S Q+E+ + VE + +++DY+
Sbjct: 194 LEMVRRIADEIESYVVELGTDGRLLSLQLEELMAGVETERELTVRDYL 241
>sp|Q8CP85|Y1092_STAES Uncharacterized protein SE_1092 OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=SE_1092 PE=3 SV=1
Length = 263
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 2 ESSKLLDDEIVQEVVKTGTDLRQYSKQ 28
E SKL D++++Q +VK DLR +KQ
Sbjct: 183 EQSKLQDEQLIQHIVKFNEDLRTMTKQ 209
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.132 0.348
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,569,796
Number of Sequences: 539616
Number of extensions: 1217704
Number of successful extensions: 6401
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 6347
Number of HSP's gapped (non-prelim): 101
length of query: 98
length of database: 191,569,459
effective HSP length: 67
effective length of query: 31
effective length of database: 155,415,187
effective search space: 4817870797
effective search space used: 4817870797
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)