Query psy17149
Match_columns 98
No_of_seqs 73 out of 75
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 23:11:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17149.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17149hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ov9_A VICH protein; dimer, he 63.1 1.3 4.4E-05 26.4 -0.3 33 44-78 3-35 (50)
2 1t7s_A BAG-1 cochaperone; stru 53.3 10 0.00035 27.0 2.9 74 6-79 50-135 (137)
3 1i6z_A BAG-family molecular ch 49.8 21 0.00071 25.3 4.1 72 6-77 51-128 (135)
4 3gp4_A Transcriptional regulat 48.1 60 0.0021 21.8 8.2 31 52-82 105-135 (142)
5 1tii_C LT-IIB, heat labIle ent 45.0 22 0.00074 21.6 3.1 27 20-46 17-45 (53)
6 3ub0_B Non-structural protein 39.0 8 0.00027 25.7 0.5 28 46-73 31-58 (87)
7 2pjw_H Uncharacterized protein 36.8 63 0.0022 21.0 4.6 30 39-68 53-82 (88)
8 4err_A Autotransporter adhesin 35.3 70 0.0024 21.1 4.7 67 9-80 8-82 (90)
9 3nmd_A CGMP dependent protein 33.6 91 0.0031 19.7 5.7 51 22-80 21-71 (72)
10 2ahm_A Replicase NSP7, replica 33.6 9.7 0.00033 25.3 0.2 28 46-73 32-59 (88)
11 1zxa_A CGMP-dependent protein 30.6 39 0.0013 21.1 2.7 35 47-81 23-57 (67)
12 1svf_B Protein (fusion glycopr 28.8 78 0.0027 17.4 3.9 24 39-68 15-38 (38)
13 4a64_A Cullin-4B, CUL4B, CUL-4 28.5 46 0.0016 25.3 3.3 23 66-88 248-271 (354)
14 2no2_A HIP-I, huntingtin-inter 27.5 1.3E+02 0.0046 19.7 6.8 58 20-77 25-82 (107)
15 2qyw_A Vesicle transport throu 27.4 1.3E+02 0.0043 19.4 4.9 23 50-72 50-72 (102)
16 3ph9_A Anterior gradient prote 27.3 16 0.00054 24.8 0.4 19 61-79 133-151 (151)
17 2r5x_A Protein YUGN, uncharact 26.4 26 0.0009 24.4 1.4 21 58-78 102-122 (129)
18 1cf7_B Protein (transcription 26.2 1.4E+02 0.0049 19.6 6.7 55 15-69 5-75 (95)
19 2kna_A Baculoviral IAP repeat- 25.1 76 0.0026 20.7 3.5 29 7-35 26-54 (104)
20 3iqc_A FLIS, flagellar protein 22.2 1.8E+02 0.0062 19.4 5.8 62 15-82 68-129 (131)
21 3onj_A T-snare VTI1; helix, HA 21.5 1.4E+02 0.0047 19.0 4.2 20 51-70 36-55 (97)
22 4eoz_B Cullin-3, CUL-3; E3 ubi 21.5 1.3E+02 0.0043 22.9 4.6 30 59-88 245-280 (364)
23 2pjw_V Vacuolar protein sortin 20.8 1.8E+02 0.0061 18.8 4.8 29 38-66 50-78 (91)
24 3t97_C Nuclear pore glycoprote 20.5 1E+02 0.0034 18.9 3.1 29 45-73 8-36 (64)
25 3t6p_A Baculoviral IAP repeat- 20.2 1.3E+02 0.0044 23.4 4.4 30 6-35 117-146 (345)
No 1
>1ov9_A VICH protein; dimer, helix, coiled-coil, DNA binding protein; 2.30A {Vibrio cholerae} SCOP: a.155.1.1
Probab=63.06 E-value=1.3 Score=26.38 Aligned_cols=33 Identities=15% Similarity=0.037 Sum_probs=27.3
Q ss_pred HHHhhHhHHHHHHHHHHhHHHHHhhccchhhhhhc
Q psy17149 44 YIKESENIVELHYQIQDCDNILEMSVLPPVLFHSI 78 (98)
Q Consensus 44 Yi~esenl~~Lh~QI~~CD~IL~rME~mL~~FQs~ 78 (98)
+++---|+-+|..+..+|+ |+.+|+|+.+|+..
T Consensus 3 ~lk~L~niRsLRA~arels--le~Lee~~eKl~~V 35 (50)
T 1ov9_A 3 ITKTLLNIRSLRAYARELT--IEQLEEALDKLTTV 35 (50)
T ss_dssp THHHHTCHHHHHHHHTTSC--HHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHCC--HHHHHHHHHHHHHH
Confidence 3455668889999999998 89999999999764
No 2
>1t7s_A BAG-1 cochaperone; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.80A {Caenorhabditis elegans} SCOP: a.7.7.1
Probab=53.31 E-value=10 Score=26.99 Aligned_cols=74 Identities=12% Similarity=0.221 Sum_probs=46.2
Q ss_pred ccChHHHHHHHHc-CCchHHHHHHHHHHHHHHHHHHH----------HHHHHhhHhHH-HHHHHHHHhHHHHHhhccchh
Q psy17149 6 LLDDEIVQEVVKT-GTDLRQYSKQVEKELKDVENKSI----------QDYIKESENIV-ELHYQIQDCDNILEMSVLPPV 73 (98)
Q Consensus 6 ~~~d~vVkeaL~~-G~DLreYs~qVE~eL~~~E~~SI----------qDYi~esenl~-~Lh~QI~~CD~IL~rME~mL~ 73 (98)
|+..+...+|+++ --.+.-|+.+.-+-|.++.--+| +++...+..++ .++..+..||.+..|+.+-++
T Consensus 50 FL~k~l~~ea~kkldKrik~~~E~~MK~LE~LDsl~i~~~~t~~~q~~~~R~KRK~lV~~IQ~~L~~~D~l~~~i~~~~~ 129 (137)
T 1t7s_A 50 FLEKPKQVEMGKKLEKKVKYFNEEAERHLETLDGMNIITETTPENQAKRNREKRKTLVNGIQTLLNQNDALLRRLQEYQS 129 (137)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEEECCCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhccHhHHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 6667777777642 12344577777777777665443 34555555554 477788999999999999999
Q ss_pred hhhhcc
Q psy17149 74 LFHSIE 79 (98)
Q Consensus 74 ~FQs~l 79 (98)
..||+.
T Consensus 130 ~~~~~~ 135 (137)
T 1t7s_A 130 VLNGDI 135 (137)
T ss_dssp ------
T ss_pred HHhccc
Confidence 888875
No 3
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=49.83 E-value=21 Score=25.26 Aligned_cols=72 Identities=17% Similarity=0.277 Sum_probs=47.3
Q ss_pred ccChHHHHHHHHcC-CchHHHHHHHHHHHHHHHHHHHH----HHHHhhHhHH-HHHHHHHHhHHHHHhhccchhhhhh
Q psy17149 6 LLDDEIVQEVVKTG-TDLRQYSKQVEKELKDVENKSIQ----DYIKESENIV-ELHYQIQDCDNILEMSVLPPVLFHS 77 (98)
Q Consensus 6 ~~~d~vVkeaL~~G-~DLreYs~qVE~eL~~~E~~SIq----DYi~esenl~-~Lh~QI~~CD~IL~rME~mL~~FQs 77 (98)
|++.+.+.+|+++= -.+.-++.+.-+-|.++..-+|+ +.-..+..++ .+|..+..||.+..++..-+...||
T Consensus 51 FL~k~l~~ea~~kl~Krik~~~E~~Mk~LE~LDs~~ip~~~~~~R~kRK~lV~~iQ~~L~~~D~l~~~~~~~~~~~q~ 128 (135)
T 1i6z_A 51 FLAKELQAEALCKLDRKVKATIEQFMKILEEIDTMVLPEQFKDSRLKRKNLVKKVQVFLAECDTVEQYICQETERLQS 128 (135)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55566666665421 23445556666666665544443 4555555554 5688899999999999999998887
No 4
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=48.14 E-value=60 Score=21.82 Aligned_cols=31 Identities=16% Similarity=0.162 Sum_probs=24.9
Q ss_pred HHHHHHHHHhHHHHHhhccchhhhhhccccc
Q psy17149 52 VELHYQIQDCDNILEMSVLPPVLFHSIETTD 82 (98)
Q Consensus 52 ~~Lh~QI~~CD~IL~rME~mL~~FQs~l~~~ 82 (98)
..|...|..|+..+..-++-+..||++-.+.
T Consensus 105 ~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 135 (142)
T 3gp4_A 105 DRLDFKIDNYDTHLIPAQEELKDFNVERSNE 135 (142)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCccccCC
Confidence 5677788889999999999999999987664
No 5
>1tii_C LT-IIB, heat labIle enterotoxin type IIB; ADP-ribosyl transferase, ADP-ribosylation, ganglioside receptor; 2.25A {Escherichia coli} SCOP: d.166.1.1
Probab=45.04 E-value=22 Score=21.63 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=20.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHH--HHHHH
Q psy17149 20 TDLRQYSKQVEKELKDVENKSI--QDYIK 46 (98)
Q Consensus 20 ~DLreYs~qVE~eL~~~E~~SI--qDYi~ 46 (98)
.||++|.+-|..++-...+.|| .+|+.
T Consensus 17 ~dL~~fkk~vKR~~~~~~~~si~~D~f~~ 45 (53)
T 1tii_C 17 HDLADFKKYIKRKFTLMTLLSINNDGFFS 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 5899999999999998999999 88853
No 6
>3ub0_B Non-structural protein 7, NSP7; feline coronavirus, primer-independen polymerase, replication; 2.60A {Feline infectious peritonitis virus}
Probab=38.97 E-value=8 Score=25.70 Aligned_cols=28 Identities=29% Similarity=0.220 Sum_probs=20.4
Q ss_pred HhhHhHHHHHHHHHHhHHHHHhhccchh
Q psy17149 46 KESENIVELHYQIQDCDNILEMSVLPPV 73 (98)
Q Consensus 46 ~esenl~~Lh~QI~~CD~IL~rME~mL~ 73 (98)
++=.--+.|||.|..|+..=+.||.|+.
T Consensus 31 k~WayCV~LHN~Ill~~D~~~a~e~l~~ 58 (87)
T 3ub0_B 31 KEWNYCVGLHNEINLCDDPDAVLEKLLA 58 (87)
T ss_dssp HHHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 3344568999999999887666666543
No 7
>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=36.84 E-value=63 Score=20.97 Aligned_cols=30 Identities=17% Similarity=0.374 Sum_probs=25.4
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHhHHHHHhh
Q psy17149 39 KSIQDYIKESENIVELHYQIQDCDNILEMS 68 (98)
Q Consensus 39 ~SIqDYi~esenl~~Lh~QI~~CD~IL~rM 68 (98)
..|.+|...-+.+.+||.++...-.+..+|
T Consensus 53 ~li~kysqKk~eL~~Ln~kl~~a~~~Yd~l 82 (88)
T 2pjw_H 53 RMLGKYAKEKEDMLSLRQVLANAERSYNQL 82 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999998887776654
No 8
>4err_A Autotransporter adhesin; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.55A {Vibrio vulnificus}
Probab=35.27 E-value=70 Score=21.13 Aligned_cols=67 Identities=13% Similarity=0.058 Sum_probs=45.9
Q ss_pred hHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHhHHHH--------Hhhccchhhhhhccc
Q psy17149 9 DEIVQEVVKTGTDLRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNIL--------EMSVLPPVLFHSIET 80 (98)
Q Consensus 9 d~vVkeaL~~G~DLreYs~qVE~eL~~~E~~SIqDYi~esenl~~Lh~QI~~CD~IL--------~rME~mL~~FQs~l~ 80 (98)
.+....|--.|-=..+++++|-+.|.+.++.+-. ...+.+.+|+.+|... ++ ..|-++|.-|.+-|+
T Consensus 8 ~EL~~aA~V~gK~~G~SYq~iid~l~eyh~~~~~---~~~e~l~~L~~kie~Y--l~~hPdS~Rv~al~qlldQv~sr~~ 82 (90)
T 4err_A 8 QELKERAKVFAKPIGASYQGILDQLDLVHQAKGR---DQIAASFELNKKINDY--IAEHPTSGRNQALTQLKEQVTSALG 82 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHHHH--HHHCCSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhcCchHHHHHHHHHHHHHHcch---HHHHHHHHHHHHHHHH--HhcCCchhhHHHHHHHHHHHHHHhh
Confidence 3444555556777778899999999998888888 4666788889988752 32 234455655655554
No 9
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=33.62 E-value=91 Score=19.72 Aligned_cols=51 Identities=16% Similarity=0.297 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHhHHHHHhhccchhhhhhccc
Q psy17149 22 LRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNILEMSVLPPVLFHSIET 80 (98)
Q Consensus 22 LreYs~qVE~eL~~~E~~SIqDYi~esenl~~Lh~QI~~CD~IL~rME~mL~~FQs~l~ 80 (98)
++++-..+.+...++- ..-.-|..|-.+|.+=|..+..+..-|-+|||-+.
T Consensus 21 i~eLq~~L~~K~eELr--------~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrSVl~ 71 (72)
T 3nmd_A 21 LRDLQYALQEKIEELR--------QRDALIDELELELDQKDELIQMLQNELDKYRSVIR 71 (72)
T ss_dssp HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 6666666555554422 22234778888899999999999999999998663
No 10
>2ahm_A Replicase NSP7, replicase polyprotein 1AB, light chain; SARS-COV, non-structural protein, S complex, hexadecamer, viral protein, replication; 2.40A {Sars coronavirus} SCOP: a.8.9.1 PDB: 1ysy_A 2kys_A
Probab=33.60 E-value=9.7 Score=25.32 Aligned_cols=28 Identities=21% Similarity=0.025 Sum_probs=20.8
Q ss_pred HhhHhHHHHHHHHHHhHHHHHhhccchh
Q psy17149 46 KESENIVELHYQIQDCDNILEMSVLPPV 73 (98)
Q Consensus 46 ~esenl~~Lh~QI~~CD~IL~rME~mL~ 73 (98)
++=.--+.|||.|-.|+..=+.||.|+.
T Consensus 32 k~WayCV~LHN~Il~~~D~~~a~e~l~~ 59 (88)
T 2ahm_A 32 KLWAQCVQLHNDILLAKDTTEAFEKMVS 59 (88)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 3344568999999999987777776654
No 11
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=30.60 E-value=39 Score=21.12 Aligned_cols=35 Identities=14% Similarity=0.110 Sum_probs=24.4
Q ss_pred hhHhHHHHHHHHHHhHHHHHhhccchhhhhhcccc
Q psy17149 47 ESENIVELHYQIQDCDNILEMSVLPPVLFHSIETT 81 (98)
Q Consensus 47 esenl~~Lh~QI~~CD~IL~rME~mL~~FQs~l~~ 81 (98)
.=..+..|...+..-|.....+.+-|-+|||-+..
T Consensus 23 Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~~ 57 (67)
T 1zxa_A 23 KEERIKELEKRLSEKEEEIQELKRKLHKCQSVLPV 57 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33456778888888899999999999999988763
No 12
>1svf_B Protein (fusion glycoprotein); paramyxovirus, SV5, coiled-coil, viral protein; 1.40A {Simian virus 5} SCOP: h.3.2.1
Probab=28.82 E-value=78 Score=17.44 Aligned_cols=24 Identities=8% Similarity=0.214 Sum_probs=13.0
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHhHHHHHhh
Q psy17149 39 KSIQDYIKESENIVELHYQIQDCDNILEMS 68 (98)
Q Consensus 39 ~SIqDYi~esenl~~Lh~QI~~CD~IL~rM 68 (98)
..+...++++.+. |..++.+|.+|
T Consensus 15 ~~~n~sl~~A~~~------l~~Sn~~L~~~ 38 (38)
T 1svf_B 15 AAVNKSLSDALQH------LAQSDTYLSAI 38 (38)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHHHTC
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHcC
Confidence 3444555555544 55666666654
No 13
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens}
Probab=28.54 E-value=46 Score=25.26 Aligned_cols=23 Identities=13% Similarity=0.063 Sum_probs=15.2
Q ss_pred Hhhccch-hhhhhcccccchhhhh
Q psy17149 66 EMSVLPP-VLFHSIETTDTIEDYR 88 (98)
Q Consensus 66 ~rME~mL-~~FQs~l~~~~~~~~~ 88 (98)
.+++.+| ++|+.=|.++..+|-+
T Consensus 248 ~h~~~ll~~~~~~lL~~~~~~dL~ 271 (354)
T 4a64_A 248 EHLTAILQKGLNNLLDENRIQDLS 271 (354)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHH
Confidence 4455555 5787777777777754
No 14
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=27.51 E-value=1.3e+02 Score=19.75 Aligned_cols=58 Identities=14% Similarity=0.160 Sum_probs=47.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHhHHHHHhhccchhhhhh
Q psy17149 20 TDLRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNILEMSVLPPVLFHS 77 (98)
Q Consensus 20 ~DLreYs~qVE~eL~~~E~~SIqDYi~esenl~~Lh~QI~~CD~IL~rME~mL~~FQs 77 (98)
.++-...++++.++..+...++..--.+...+.+|-++|..-+.=|..+..-+..++.
T Consensus 25 ~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~ 82 (107)
T 2no2_A 25 VDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQ 82 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777889999999999999999999999999999999977777666555555544
No 15
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=27.35 E-value=1.3e+02 Score=19.38 Aligned_cols=23 Identities=9% Similarity=0.026 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHhHHHHHhhccch
Q psy17149 50 NIVELHYQIQDCDNILEMSVLPP 72 (98)
Q Consensus 50 nl~~Lh~QI~~CD~IL~rME~mL 72 (98)
-+......+.+|+.+|.+||-=.
T Consensus 50 ~i~~ie~~ldEA~eLl~qMelE~ 72 (102)
T 2qyw_A 50 LVRDFDEKQQEANETLAEMEEEL 72 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788889999999987433
No 16
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A
Probab=27.34 E-value=16 Score=24.85 Aligned_cols=19 Identities=16% Similarity=-0.076 Sum_probs=13.1
Q ss_pred hHHHHHhhccchhhhhhcc
Q psy17149 61 CDNILEMSVLPPVLFHSIE 79 (98)
Q Consensus 61 CD~IL~rME~mL~~FQs~l 79 (98)
-+.+|..|+..|..||++|
T Consensus 133 ~~~ll~~~~~al~~~~~~~ 151 (151)
T 3ph9_A 133 LPLLIENMKKALRLIQSEL 151 (151)
T ss_dssp HHHHHHHHHHHHSCCC---
T ss_pred HHHHHHHHHHHHHHHhccC
Confidence 4778888888888888775
No 17
>2r5x_A Protein YUGN, uncharacterized conserved protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.04A {Geobacillus kaustophilus}
Probab=26.36 E-value=26 Score=24.37 Aligned_cols=21 Identities=14% Similarity=0.224 Sum_probs=18.7
Q ss_pred HHHhHHHHHhhccchhhhhhc
Q psy17149 58 IQDCDNILEMSVLPPVLFHSI 78 (98)
Q Consensus 58 I~~CD~IL~rME~mL~~FQs~ 78 (98)
++.|..+|+.+|+.|..||-+
T Consensus 102 v~~~~~~L~ele~~L~~~~~~ 122 (129)
T 2r5x_A 102 VSQCQNVLAQVKSELEKIKEE 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHHHHHhhhc
Confidence 778999999999999999865
No 18
>1cf7_B Protein (transcription factor DP-2); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=26.24 E-value=1.4e+02 Score=19.60 Aligned_cols=55 Identities=18% Similarity=0.315 Sum_probs=36.6
Q ss_pred HHHcCCchHHHHHHHHHHHHH--------HHHHHHHHHHHh--------hHhHHHHHHHHHHhHHHHHhhc
Q psy17149 15 VVKTGTDLRQYSKQVEKELKD--------VENKSIQDYIKE--------SENIVELHYQIQDCDNILEMSV 69 (98)
Q Consensus 15 aL~~G~DLreYs~qVE~eL~~--------~E~~SIqDYi~e--------senl~~Lh~QI~~CD~IL~rME 69 (98)
.-++|.-||.||..|=+.++. +=.+.|++|... .-+....+..+=++=++|..|.
T Consensus 5 ~~k~~~GLr~fS~kVcekVk~k~~Tty~eVAdeLV~e~~~~~~~~~~~~~~d~~~~rRRvYD~~NVl~a~g 75 (95)
T 1cf7_B 5 GDKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHLAADSAYDQKNIRRRVYDALNVLMAMN 75 (95)
T ss_dssp ----CCHHHHHHHHHHHHHHHHSEECHHHHHHHHHHHHHTCTTCCGGGSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccCccHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcccccCccchhcccccchhhHHHHHHHHHHhc
Confidence 346789999999999888865 455556666543 2344567777777778887775
No 19
>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis, ligase, metal-binding, phosphoprotein, inhibitor, thiol protease inhibitor; NMR {Homo sapiens}
Probab=25.09 E-value=76 Score=20.68 Aligned_cols=29 Identities=21% Similarity=0.477 Sum_probs=23.9
Q ss_pred cChHHHHHHHHcCCchHHHHHHHHHHHHH
Q psy17149 7 LDDEIVQEVVKTGTDLRQYSKQVEKELKD 35 (98)
Q Consensus 7 ~~d~vVkeaL~~G~DLreYs~qVE~eL~~ 35 (98)
...++|+.||.-|.+.+.+.+-|...+..
T Consensus 26 m~s~vV~~alemGf~~~~V~~~v~~ki~~ 54 (104)
T 2kna_A 26 FQNPMVQEAIRMGFSFKDIKKIMEEKIQI 54 (104)
T ss_dssp HHCTHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HcCHHHHHHHHcCccHHHHHHHHHHHHHH
Confidence 34679999999999999998888777633
No 20
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=22.22 E-value=1.8e+02 Score=19.43 Aligned_cols=62 Identities=10% Similarity=0.017 Sum_probs=45.4
Q ss_pred HHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHhHHHHHhhccchhhhhhccccc
Q psy17149 15 VVKTGTDLRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNILEMSVLPPVLFHSIETTD 82 (98)
Q Consensus 15 aL~~G~DLreYs~qVE~eL~~~E~~SIqDYi~esenl~~Lh~QI~~CD~IL~rME~mL~~FQs~l~~~ 82 (98)
-|..+.|. ++...|-.+|..++ +|+...=.-+.+++.....|.+..-++++..+|+....++
T Consensus 68 ~L~~sLd~-e~GgeiA~nL~~LY-----~y~~~~L~~An~~~d~~~l~ev~~ll~~lr~aW~~i~~~~ 129 (131)
T 3iqc_A 68 ELLNILDY-EKGGEVAVYLTGLY-----THQIKVLTQANVENDASKIDLVLNVARGLLEAWREIHSDE 129 (131)
T ss_dssp HHHHTBCH-HHHHHHHHHHHHHH-----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHhcCC-ccccHHHHHHHHHH-----HHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36777775 34557777776666 6766666668888888888888888888888887654443
No 21
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=21.53 E-value=1.4e+02 Score=18.99 Aligned_cols=20 Identities=10% Similarity=0.145 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhHHHHHhhcc
Q psy17149 51 IVELHYQIQDCDNILEMSVL 70 (98)
Q Consensus 51 l~~Lh~QI~~CD~IL~rME~ 70 (98)
+......+.+|+.+|.+||-
T Consensus 36 i~~ie~~ldEA~ell~qMel 55 (97)
T 3onj_A 36 LKHVEQQQDELFDLLDQMDV 55 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666653
No 22
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B
Probab=21.51 E-value=1.3e+02 Score=22.90 Aligned_cols=30 Identities=10% Similarity=-0.046 Sum_probs=19.7
Q ss_pred HHhHHHH--Hhhccch----hhhhhcccccchhhhh
Q psy17149 59 QDCDNIL--EMSVLPP----VLFHSIETTDTIEDYR 88 (98)
Q Consensus 59 ~~CD~IL--~rME~mL----~~FQs~l~~~~~~~~~ 88 (98)
..|+.+| .+++.+| ++|+.=|.++..+|-+
T Consensus 245 ~~~e~~LI~~h~~~ll~~e~~g~~~lL~~~~~~dL~ 280 (364)
T 4eoz_B 245 KVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLG 280 (364)
T ss_dssp HHHHHHHTTTTHHHHHTCTTTSHHHHTTTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHhCCCHHHHH
Confidence 3344444 4566666 4888888888888754
No 23
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=20.85 E-value=1.8e+02 Score=18.82 Aligned_cols=29 Identities=21% Similarity=0.399 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhHhHHHHHHHHHHhHHHHH
Q psy17149 38 NKSIQDYIKESENIVELHYQIQDCDNILE 66 (98)
Q Consensus 38 ~~SIqDYi~esenl~~Lh~QI~~CD~IL~ 66 (98)
..++.+|+..-+.+.++|+.|..|=.+-.
T Consensus 50 ~r~l~~~~~K~~~L~~mn~Kls~a~rlYD 78 (91)
T 2pjw_V 50 NYALNDKAQKYNTLIEMNGKISEIMNIYD 78 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999844433
No 24
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=20.49 E-value=1e+02 Score=18.86 Aligned_cols=29 Identities=17% Similarity=0.113 Sum_probs=24.3
Q ss_pred HHhhHhHHHHHHHHHHhHHHHHhhccchh
Q psy17149 45 IKESENIVELHYQIQDCDNILEMSVLPPV 73 (98)
Q Consensus 45 i~esenl~~Lh~QI~~CD~IL~rME~mL~ 73 (98)
+.+++.|..||.++..|..--.+++.-|.
T Consensus 8 veNgekI~~L~~~v~~~e~~Q~~ldq~Ld 36 (64)
T 3t97_C 8 IENGEKITSLHREVEKVKLDQKRLDQELD 36 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999999888888887664
No 25
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=20.19 E-value=1.3e+02 Score=23.40 Aligned_cols=30 Identities=10% Similarity=0.314 Sum_probs=26.0
Q ss_pred ccChHHHHHHHHcCCchHHHHHHHHHHHHH
Q psy17149 6 LLDDEIVQEVVKTGTDLRQYSKQVEKELKD 35 (98)
Q Consensus 6 ~~~d~vVkeaL~~G~DLreYs~qVE~eL~~ 35 (98)
..+.++|+.||+-|-+.+...+-|.+.|+.
T Consensus 117 ~~~~~~v~~~l~mGf~~~~v~~~~~~~~~~ 146 (345)
T 3t6p_A 117 MMNTPVVKSALEMGFNRDLVKQTVQSKILT 146 (345)
T ss_dssp GGCSHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 456799999999999999999988888754
Done!