Query psy17149
Match_columns 98
No_of_seqs 73 out of 75
Neff 4.2
Searched_HMMs 13730
Date Fri Aug 16 23:11:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17149.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17149hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lr1a_ a.155.1.1 (A:) H1 prot 66.6 0.64 4.7E-05 27.4 0.3 34 43-78 2-35 (57)
2 d2ahma1 a.8.9.1 (A:6-78) Nonst 38.9 3.3 0.00024 25.2 0.2 29 46-74 27-55 (73)
3 d1tfua_ c.26.1.3 (A:) Phosphop 30.6 14 0.001 21.8 2.2 30 7-47 125-154 (157)
4 d1k4ma_ c.26.1.3 (A:) Nicotina 28.5 12 0.00088 22.7 1.7 20 7-26 179-198 (213)
5 d1od6a_ c.26.1.3 (A:) Phosphop 27.5 13 0.00096 21.9 1.7 22 7-28 127-148 (160)
6 d1o6ba_ c.26.1.3 (A:) Phosphop 23.7 13 0.00095 22.2 1.1 18 8-25 127-144 (163)
7 d1qjca_ c.26.1.3 (A:) Phosphop 23.3 17 0.0013 21.2 1.6 18 8-25 126-143 (157)
8 d1t7sa_ a.7.7.1 (A:) BAG-famil 23.2 42 0.0031 21.9 3.7 66 6-71 50-127 (129)
9 d1v95a_ c.51.1.1 (A:) Nuclear 22.3 16 0.0011 24.2 1.3 17 20-36 18-34 (130)
10 d1f9aa_ c.26.1.3 (A:) Nicotina 21.9 18 0.0013 21.7 1.5 31 7-48 124-154 (164)
11 d1jr3a1 a.80.1.1 (A:243-368) g 21.2 67 0.0049 18.7 4.2 27 10-36 24-50 (126)
No 1
>d1lr1a_ a.155.1.1 (A:) H1 protein (H-NS) {Escherichia coli [TaxId: 562]}
Probab=66.62 E-value=0.64 Score=27.37 Aligned_cols=34 Identities=21% Similarity=0.129 Sum_probs=28.1
Q ss_pred HHHHhhHhHHHHHHHHHHhHHHHHhhccchhhhhhc
Q psy17149 43 DYIKESENIVELHYQIQDCDNILEMSVLPPVLFHSI 78 (98)
Q Consensus 43 DYi~esenl~~Lh~QI~~CD~IL~rME~mL~~FQs~ 78 (98)
+.++---||-+|..+-.+|. |+.||+||.+|...
T Consensus 2 e~LK~L~NIRsLRA~aRE~s--lE~LEe~lEKl~~V 35 (57)
T d1lr1a_ 2 EALKILNNIRTLRAQAREST--LETLEEMLEKLEVV 35 (57)
T ss_dssp HHHHHTTHHHHHHHHTTTSC--THHHHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHHHHHhCC--HHHHHHHHHHHHHH
Confidence 45666778999999988885 79999999999754
No 2
>d2ahma1 a.8.9.1 (A:6-78) Nonstructural protein 7, NSP7 {SARS coronavirus [TaxId: 227859]}
Probab=38.93 E-value=3.3 Score=25.19 Aligned_cols=29 Identities=24% Similarity=0.070 Sum_probs=21.8
Q ss_pred HhhHhHHHHHHHHHHhHHHHHhhccchhh
Q psy17149 46 KESENIVELHYQIQDCDNILEMSVLPPVL 74 (98)
Q Consensus 46 ~esenl~~Lh~QI~~CD~IL~rME~mL~~ 74 (98)
++=.--+.|||.|..|+..=+.||.++..
T Consensus 27 k~waycV~LHN~Il~~~D~~~a~e~l~~L 55 (73)
T d2ahma1 27 KLWAQCVQLHNDILLAKDTTEAFEKMVSL 55 (73)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 33445689999999999887777776543
No 3
>d1tfua_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=30.58 E-value=14 Score=21.83 Aligned_cols=30 Identities=13% Similarity=0.386 Sum_probs=22.7
Q ss_pred cChHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17149 7 LDDEIVQEVVKTGTDLRQYSKQVEKELKDVENKSIQDYIKE 47 (98)
Q Consensus 7 ~~d~vVkeaL~~G~DLreYs~qVE~eL~~~E~~SIqDYi~e 47 (98)
.+...||+++++|-|++.+-.+ +|.+||+|
T Consensus 125 ISST~IR~~i~~~~~i~~lvP~-----------~V~~yIke 154 (157)
T d1tfua_ 125 VSSSLAKEVAMLGGDVSELLPE-----------PVNRRLRD 154 (157)
T ss_dssp CCHHHHHHHHHTTCCCGGGSCH-----------HHHHHHHH
T ss_pred ccHHHHHHHHHcCCChHHhcCH-----------HHHHHHHH
Confidence 3567899999999998887543 57777765
No 4
>d1k4ma_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Escherichia coli [TaxId: 562]}
Probab=28.55 E-value=12 Score=22.67 Aligned_cols=20 Identities=15% Similarity=0.361 Sum_probs=16.2
Q ss_pred cChHHHHHHHHcCCchHHHH
Q psy17149 7 LDDEIVQEVVKTGTDLRQYS 26 (98)
Q Consensus 7 ~~d~vVkeaL~~G~DLreYs 26 (98)
.+...||+++++|.|++.+-
T Consensus 179 ISST~IR~~i~~g~~i~~lv 198 (213)
T d1k4ma_ 179 ISATIIRERLQNGESCEDLL 198 (213)
T ss_dssp CCHHHHHHHHHTTCCCTTTS
T ss_pred CCHHHHHHHHHcCCChhHhC
Confidence 45678999999999987664
No 5
>d1od6a_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Thermus thermophilus [TaxId: 274]}
Probab=27.50 E-value=13 Score=21.91 Aligned_cols=22 Identities=18% Similarity=0.443 Sum_probs=17.3
Q ss_pred cChHHHHHHHHcCCchHHHHHH
Q psy17149 7 LDDEIVQEVVKTGTDLRQYSKQ 28 (98)
Q Consensus 7 ~~d~vVkeaL~~G~DLreYs~q 28 (98)
.+...||+.+++|.|++.|-..
T Consensus 127 ISST~IR~~i~~g~~i~~lVP~ 148 (160)
T d1od6a_ 127 VSSTMVKEIARYGGDVSKLVPP 148 (160)
T ss_dssp CCHHHHHHHHHTTCCCTTTSCH
T ss_pred cchHHHHHHHHcCCChHHhcCH
Confidence 3577899999999998877543
No 6
>d1o6ba_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Bacillus subtilis [TaxId: 1423]}
Probab=23.65 E-value=13 Score=22.22 Aligned_cols=18 Identities=22% Similarity=0.481 Sum_probs=15.5
Q ss_pred ChHHHHHHHHcCCchHHH
Q psy17149 8 DDEIVQEVVKTGTDLRQY 25 (98)
Q Consensus 8 ~d~vVkeaL~~G~DLreY 25 (98)
+...||+++++|-|++.|
T Consensus 127 SST~IR~~i~~g~~i~~l 144 (163)
T d1o6ba_ 127 SSSIVKEVARYDGSVSEF 144 (163)
T ss_dssp CHHHHHHHHHTTCCCTTT
T ss_pred CHHHHHHHHHcCCChHHh
Confidence 467899999999998877
No 7
>d1qjca_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Escherichia coli [TaxId: 562]}
Probab=23.29 E-value=17 Score=21.20 Aligned_cols=18 Identities=22% Similarity=0.536 Sum_probs=14.9
Q ss_pred ChHHHHHHHHcCCchHHH
Q psy17149 8 DDEIVQEVVKTGTDLRQY 25 (98)
Q Consensus 8 ~d~vVkeaL~~G~DLreY 25 (98)
+...||++++.|.|+..+
T Consensus 126 SST~IR~~i~~g~di~~l 143 (157)
T d1qjca_ 126 SSSLVKEVARHQGDVTHF 143 (157)
T ss_dssp CHHHHHHHHHTTCCCGGG
T ss_pred CHHHHHHHHHcCCChHHh
Confidence 567799999999998766
No 8
>d1t7sa_ a.7.7.1 (A:) BAG-family molecular chaperon regulator-1, BAG1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=23.16 E-value=42 Score=21.90 Aligned_cols=66 Identities=14% Similarity=0.260 Sum_probs=45.1
Q ss_pred ccChHHHHHHHH-cCCchHHHHHHHHHHHHHHHHHHH----------HHHHHhhHhHHH-HHHHHHHhHHHHHhhccc
Q psy17149 6 LLDDEIVQEVVK-TGTDLRQYSKQVEKELKDVENKSI----------QDYIKESENIVE-LHYQIQDCDNILEMSVLP 71 (98)
Q Consensus 6 ~~~d~vVkeaL~-~G~DLreYs~qVE~eL~~~E~~SI----------qDYi~esenl~~-Lh~QI~~CD~IL~rME~m 71 (98)
|+..+...+|+. -.--+.-++.+..+.|..+..-.| ++....+..++. +..=+..||.+.+|+++-
T Consensus 50 FL~k~l~~eal~kl~Krik~~~E~~Mk~LEtLDsl~l~~~~~~ee~~~~~R~kRK~LV~~iQ~~L~~~D~l~~~i~~~ 127 (129)
T d1t7sa_ 50 FLEKPKQVEMGKKLEKKVKYFNEEAERHLETLDGMNIITETTPENQAKRNREKRKTLVNGIQTLLNQNDALLRRLQEY 127 (129)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEEECCCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccCcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 667777777775 233466677777777777765444 477777777754 455578899999887654
No 9
>d1v95a_ c.51.1.1 (A:) Nuclear receptor coactivator 5 (KIAA1637) {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.34 E-value=16 Score=24.17 Aligned_cols=17 Identities=18% Similarity=0.610 Sum_probs=14.8
Q ss_pred CchHHHHHHHHHHHHHH
Q psy17149 20 TDLRQYSKQVEKELKDV 36 (98)
Q Consensus 20 ~DLreYs~qVE~eL~~~ 36 (98)
-++++||..||..|+.+
T Consensus 18 k~~~~YAe~Ie~rL~~~ 34 (130)
T d1v95a_ 18 KQTKDYAESVGRKVRDL 34 (130)
T ss_dssp SGGGHHHHHHHHHHHTT
T ss_pred CccchHHHHHHHHHHhc
Confidence 47999999999999863
No 10
>d1f9aa_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=21.93 E-value=18 Score=21.66 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=22.7
Q ss_pred cChHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17149 7 LDDEIVQEVVKTGTDLRQYSKQVEKELKDVENKSIQDYIKES 48 (98)
Q Consensus 7 ~~d~vVkeaL~~G~DLreYs~qVE~eL~~~E~~SIqDYi~es 48 (98)
.+...||+++++|.+.+.|-. .+|.+||++-
T Consensus 124 ISST~IR~~i~~g~~i~~~vp-----------~~V~~~i~~~ 154 (164)
T d1f9aa_ 124 YSGTEIRRRMLNGEKWEHLVP-----------KAVVDVIKEI 154 (164)
T ss_dssp SSHHHHHHHHHHTCCCGGGSC-----------HHHHHHHHHH
T ss_pred cCHHHHHHHHHcCCChHHhCC-----------HHHHHHHHHc
Confidence 356789999999999888743 3566777663
No 11
>d1jr3a1 a.80.1.1 (A:243-368) gamma subunit {Escherichia coli [TaxId: 562]}
Probab=21.21 E-value=67 Score=18.69 Aligned_cols=27 Identities=11% Similarity=0.227 Sum_probs=21.8
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHH
Q psy17149 10 EIVQEVVKTGTDLRQYSKQVEKELKDV 36 (98)
Q Consensus 10 ~vVkeaL~~G~DLreYs~qVE~eL~~~ 36 (98)
+.++++.++|.|.+.+..++=.-++.+
T Consensus 24 ~~l~~i~~~G~d~~~~l~~L~~~~r~l 50 (126)
T d1jr3a1 24 ALINEAAARGIEWEALLVEMLGLLHRI 50 (126)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 467788889999999988887777653
Done!