RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17149
(98 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.018
Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 14/91 (15%)
Query: 7 LDDEIVQEVVKTGTDLRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNILE 66
L I E + R Y +Q ++ D Q + K + + ++ + +++ +LE
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDN-----QVFAKYNVSRLQPYLKLRQA--LLE 146
Query: 67 MSVLPPVLFH-------SIETTDTIEDYRVL 90
+ VL + D Y+V
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Score = 27.9 bits (61), Expect = 0.58
Identities = 11/83 (13%), Positives = 28/83 (33%), Gaps = 16/83 (19%)
Query: 18 TGTDLRQYSKQ------VEKELKDVENKSIQDYIKESENIVELHYQIQDCDNILEMSVLP 71
T QY + + + + + K +QD K ++ D+I+
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI-------LSKEEIDHIIMS---K 58
Query: 72 PVLFHSIETTDTIEDYRVLLVDQ 94
+ ++ T+ + +V +
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQK 81
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair,
DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A
{Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Length = 377
Score = 29.8 bits (67), Expect = 0.11
Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 5/86 (5%)
Query: 9 DEIVQEVVKTGTDLRQYSKQVEKELKDVENKS---IQDYIKE--SENIVELHYQIQDCDN 63
+EI +V+ G + R Q+ + +DV++ I DY E E + Q
Sbjct: 224 EEIRPYIVELGEEGRLARMQLRELTEDVDDLLVLLIMDYSSEEVEEETAQNILQDFITRR 283
Query: 64 ILEMSVLPPVLFHSIETTDTIEDYRV 89
+ VL + ++ ++D V
Sbjct: 284 EPSPISISRVLGYDVQQAAQLDDVLV 309
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.2 bits (65), Expect = 0.17
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 21/53 (39%)
Query: 4 SKLLD---DEIVQEVVK------------------TGTDLRQYSKQVEKELKD 35
S LL D I +++VK G+DLR S + + + D
Sbjct: 429 SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVD 481
Score = 26.6 bits (58), Expect = 1.7
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 20/68 (29%)
Query: 4 SKLLDDEIVQEVV-----KTGTDL---------RQYSKQVEKELKDVEN-KSIQDYIKES 48
+ E +Q VV +TG + +QY +L+ ++ ++ ++IK
Sbjct: 1818 AASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYV--AAGDLRALDTVTNVLNFIKL- 1874
Query: 49 ENI--VEL 54
+ I +EL
Sbjct: 1875 QKIDIIEL 1882
>3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A
{Escherichia coli} PDB: 3bf8_A
Length = 255
Score = 27.0 bits (60), Expect = 0.80
Identities = 9/54 (16%), Positives = 21/54 (38%), Gaps = 13/54 (24%)
Query: 52 VELHYQIQDCDNILEMSVLPPVLF-H----SIETTDTI-----EDYRVLLVDQP 95
++L+ + Q N P++ H S++ + D+ ++ VD
Sbjct: 1 MKLNIRAQTAQNQHN---NSPIVLVHGLFGSLDNLGVLARDLVNDHNIIQVDVR 51
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 25.5 bits (55), Expect = 2.6
Identities = 10/50 (20%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 2 ESSKLLDDEIVQEVVKTGTD-LRQYSKQVEKELKDVENKSIQ-DYIKESE 49
+SK+++ E ++ K + ++ S+QVEK N+ + ++ +
Sbjct: 103 AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKI--NNRIADKAFYQQPD 150
>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics,
protein structure initiative, northeast structural
genomics consortium; 1.70A {Geobacter sulfurreducens
pca}
Length = 253
Score = 25.8 bits (57), Expect = 2.8
Identities = 5/25 (20%), Positives = 16/25 (64%)
Query: 23 RQYSKQVEKELKDVENKSIQDYIKE 47
+++ ++EK+ + V + +Q Y+ +
Sbjct: 24 NKFAVEIEKQQQPVNDPEVQRYVDK 48
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for
structural genomics of infec diseases, csgid,
flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Length = 218
Score = 24.9 bits (54), Expect = 4.4
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 67 MSVLPPVLFHSIETTDTIEDY 87
M LP + + + IE
Sbjct: 184 MKPLPTFMCNDVIKQPDIEGD 204
>2amj_A Modulator of drug activity B; oxidoreductase, menadione,
DT-diaphorase, montreal-kingston structural genomics
initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Length = 204
Score = 24.6 bits (53), Expect = 5.6
Identities = 6/29 (20%), Positives = 11/29 (37%), Gaps = 4/29 (13%)
Query: 67 MSVLPPVLFHSIETTDTIE----DYRVLL 91
M LP + + + + +YR L
Sbjct: 171 MEPLPTFIANDVIKMPDVPRYTEEYRKHL 199
>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast;
3.10A {Plasmodium falciparum}
Length = 456
Score = 24.1 bits (53), Expect = 8.7
Identities = 4/20 (20%), Positives = 13/20 (65%)
Query: 31 KELKDVENKSIQDYIKESEN 50
++K+ + +++Y+K S+
Sbjct: 290 MDIKNNQRLRLKEYLKYSKT 309
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 24.1 bits (51), Expect = 8.8
Identities = 11/63 (17%), Positives = 19/63 (30%), Gaps = 34/63 (53%)
Query: 23 RQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNILEMSVLPPVLFHSIETTD 82
+Q K+++ LK Y +S P L +I+
Sbjct: 19 KQALKKLQASLK--------LYADDS----------------------APAL--AIKA-- 44
Query: 83 TIE 85
T+E
Sbjct: 45 TME 47
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.132 0.348
Gapped
Lambda K H
0.267 0.0577 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,407,000
Number of extensions: 71188
Number of successful extensions: 211
Number of sequences better than 10.0: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 25
Length of query: 98
Length of database: 6,701,793
Length adjustment: 64
Effective length of query: 34
Effective length of database: 4,914,849
Effective search space: 167104866
Effective search space used: 167104866
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.8 bits)