RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17149
         (98 letters)



>d1zbfa1 c.55.3.1 (A:62-193) BH0863-like Ribonuclease H {Bacillus
           halodurans [TaxId: 86665]}
          Length = 132

 Score = 24.1 bits (52), Expect = 3.1
 Identities = 5/22 (22%), Positives = 10/22 (45%)

Query: 34  KDVENKSIQDYIKESENIVELH 55
           ++ E   I   + E+E  +  H
Sbjct: 90  RNEETALIWKLVDEAEEWLNTH 111


>d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase
          RfbF {Salmonella typhimurium [TaxId: 90371]}
          Length = 259

 Score = 23.5 bits (49), Expect = 5.3
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 19 GTDLRQYSKQVEKELKDVENKSIQDYI 45
          GT L + +    K + ++  K I  +I
Sbjct: 13 GTRLSEETIVKPKPMVEIGGKPILWHI 39


>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like
          protein, OASL {Human (Homo sapiens) [TaxId: 9606]}
          Length = 87

 Score = 22.6 bits (48), Expect = 8.8
 Identities = 9/57 (15%), Positives = 21/57 (36%)

Query: 33 LKDVENKSIQDYIKESENIVELHYQIQDCDNILEMSVLPPVLFHSIETTDTIEDYRV 89
          +K+ +  S    I  +  I+ L  QI+D   + +           ++    +  Y +
Sbjct: 12 VKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGI 68


>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]}
          Length = 456

 Score = 22.8 bits (48), Expect = 9.7
 Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 4/31 (12%)

Query: 10  EIVQEVVKTGTDLRQYSKQV----EKELKDV 36
           EI ++  K G  L+  +  +    E E    
Sbjct: 420 EIAKKAHKEGLTLKAAALALGYLSEAEFDSW 450


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.132    0.348 

Gapped
Lambda     K      H
   0.267   0.0662    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 339,082
Number of extensions: 13829
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 25
Length of query: 98
Length of database: 2,407,596
Length adjustment: 60
Effective length of query: 38
Effective length of database: 1,583,796
Effective search space: 60184248
Effective search space used: 60184248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.0 bits)