BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17150
(146 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TFM|A Chain A, Myosin X Ph1n-Ph2-Ph1c Tandem
Length = 228
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 53 HWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNSVKSPSPHLTFVVKS 112
+W KRWFV R S+ L Y+ + SE+K +G R +E+ +D+ N +
Sbjct: 78 NWKKRWFVL-RQSK-LMYFENDSEEKLKGTVEVRSAKEI-IDNTNKENG------IDIIM 128
Query: 113 SDRTFHLMAPSAEAMRIWIDVI 134
+DRTFHL+A S E W V+
Sbjct: 129 ADRTFHLIAESPEDASQWFSVL 150
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 93 VDHLNSVKSPSPHLTFVVKSSDRTFHLMAPSAEAMRIWIDVI 134
+D + + SP +FV+ +++R H A + E M WI ++
Sbjct: 183 IDSVCASDSPDRPNSFVIITANRVLHCNADTPEEMHHWITLL 224
>pdb|1V5U|A Chain A, Solution Structure Of The C-Terminal Pleckstrin Homology
Domain Of Sbf1 From Mouse
Length = 117
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Query: 42 GYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVY--VDHLNSV 99
G L K W RWFV D+T L YY R + + +G +E V + +
Sbjct: 12 GILYKKGAFMKPWKARWFVLDKTKHQLRYYDHRMDTECKGVIDLAEVEAVAPGTPTIGAP 71
Query: 100 KSPSPHLTFVVKSSDRTFHLMAPSAEAMRIWIDVIFS 136
K+ F VK++ R ++ A + + W+D I S
Sbjct: 72 KTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDRIQS 108
>pdb|2DN6|A Chain A, Solution Structure Of The Ph Domain Of Kiaa0640 Protein
From Human
Length = 115
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 6/96 (6%)
Query: 41 RGYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNSVK 100
+GY+ K R +W +RWFV ++YY K ++G E V+ L
Sbjct: 11 QGYMMKKGHRRKNWTERWFVL--KPNIISYYVSEDLKDKKGDILLD--ENCCVESLPD-- 64
Query: 101 SPSPHLTFVVKSSDRTFHLMAPSAEAMRIWIDVIFS 136
F+VK D+TF + A + + WI I S
Sbjct: 65 KDGKKCLFLVKCFDKTFEISASDKKKKQEWIQAIHS 100
>pdb|1EAZ|A Chain A, Crystal Structure Of The Phosphoinositol
(3,4)-Bisphosphate Binding Ph Domain Of Tapp1 From Human
Length = 125
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 11/100 (11%)
Query: 42 GYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNSVKS 101
GY K +W +R+F D + + Y+ EK+ R I V + K
Sbjct: 18 GYCVKQGAVMKNWKRRYFQLDENT--IGYFKSELEKEP-----LRVIPLKEVHKVQECKQ 70
Query: 102 PSPHL---TFVVKSSDRTFHLMAPSAEAMRIWIDVIFSGA 138
+ F + ++ RTF++ A S E M WI + SGA
Sbjct: 71 SDIMMRDNLFEIVTTSRTFYVQADSPEEMHSWIKAV-SGA 109
>pdb|1FHW|A Chain A, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol(1,3,4,5,6)pentakisphosphate
pdb|1FHW|B Chain B, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol(1,3,4,5,6)pentakisphosphate
Length = 129
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 20/110 (18%)
Query: 42 GYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGAT-----YFRCIEEVYVDHL 96
G+L K+ GR W +RWF+ T L Y+ ++K+ RG R +E+ +
Sbjct: 7 GWLLKLGGRVKTWKRRWFIL--TDNCLYYFEYTTDKEPRGIIPLENLSIREVEDPRKPNC 64
Query: 97 NSVKSPSPHLTFVVKSSDR------------TFHLMAPSAEAMRIWIDVI 134
+ +PS H V+K+ + + APS E W+ I
Sbjct: 65 FELYNPS-HKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSI 113
>pdb|2R0D|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R0D|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 24/112 (21%)
Query: 42 GYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNSVKS 101
G+L K+ GR W +RWF+ T L Y+ ++K+ RG +E + + + +
Sbjct: 217 GWLLKLGGRVKTWKRRWFIL--TDNCLYYFEYTTDKEPRGII---PLENLSIREVEDPRK 271
Query: 102 PSPHLTF-------------------VVKSSDRTFHLMAPSAEAMRIWIDVI 134
P+ + VV+ + + + APS E W+ I
Sbjct: 272 PNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSI 323
>pdb|1V5P|A Chain A, Solution Structure Of The N-Terminal Pleckstrin Homology
Domain Of Tapp2 From Mouse
Length = 126
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/93 (19%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 45 NKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNSV---KS 101
N+ +G+F +R+F+ D + L +Y D + GA ++ Y+ ++ +
Sbjct: 26 NENSGKFL---RRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKVSIATPKQK 82
Query: 102 PSPHLTFVVKSSDRTFHLMAPSAEAMRIWIDVI 134
P FV+ + + + L A + ++ W++ +
Sbjct: 83 PKTPFCFVINALSQRYFLQANDQKDLKDWVEAL 115
>pdb|2D9Y|A Chain A, Solution Structure Of The Ph Domain Of Pepp-3 From Human
Length = 117
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 7/99 (7%)
Query: 42 GYLNKMAGR-FHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNSVK 100
G+L K A WNKRWFV R L YY D E+ G+ V +++
Sbjct: 15 GWLFKQASSGVKQWNKRWFVL--VDRCLFYYKDEKEESILGSIPLLSFRVAAVQPSDNI- 71
Query: 101 SPSPHLTFVVK-SSDRTFHLMAPSAEAMRIWIDVIFSGA 138
S TF + + RT+ A S E WI + A
Sbjct: 72 --SRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAA 108
>pdb|2YRY|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology
Domain-Containing Family A Member 6 From Human
Length = 122
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 7/99 (7%)
Query: 42 GYLNKMAGR-FHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNSVK 100
G+L K A WNKRWFV R L YY D E+ G+ V +++
Sbjct: 26 GWLFKQASSGVKQWNKRWFVL--VDRCLFYYKDEKEESILGSIPLLSFRVAAVQPSDNI- 82
Query: 101 SPSPHLTFVVK-SSDRTFHLMAPSAEAMRIWIDVIFSGA 138
S TF + + RT+ A S E WI + A
Sbjct: 83 --SRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAA 119
>pdb|2R09|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R09|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 42 GYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRG 81
G+L K+ GR W +RWF+ T L Y+ ++K+ RG
Sbjct: 217 GWLLKLGGRVKTWKRRWFIL--TDNCLYYFEYTTDKEPRG 254
>pdb|1FGY|A Chain A, Grp1 Ph Domain With Ins(1,3,4,5)p4
pdb|1FGZ|A Chain A, Grp1 Ph Domain (Unliganded)
Length = 127
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 42 GYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRG 81
G+L K+ GR W +RWF+ T L Y+ ++K+ RG
Sbjct: 9 GWLLKLGGRVKTWKRRWFIL--TDNCLYYFEYTTDKEPRG 46
>pdb|1FHX|A Chain A, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol 1,3,4,5-Tetrakisphosphate
pdb|1FHX|B Chain B, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol 1,3,4,5-Tetrakisphosphate
Length = 129
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 42 GYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRG 81
G+L K+ GR W +RWF+ T L Y+ ++K+ RG
Sbjct: 7 GWLLKLGGRVKTWKRRWFIL--TDNCLYYFEYTTDKEPRG 44
>pdb|2DKP|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology
Domain-Containing Protein Family A Member 5 From Human
Length = 128
Score = 34.7 bits (78), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 17/105 (16%)
Query: 41 RGYLNKM-AGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYV---DHL 96
RG+L K + W KRWFV + L YY D E+ G+ + + DH+
Sbjct: 24 RGWLYKQDSTGMKLWKKRWFVL--SDLCLFYYRDEKEEGILGSILLPSFQIALLTSEDHI 81
Query: 97 N---SVKSPSPHLTFVVKSSDRTFHLMAPSAEAMRIWIDVIFSGA 138
N + K+ P++ RT++ + + M +W+ + A
Sbjct: 82 NRKYAFKAAHPNM--------RTYYFCTDTGKEMELWMKAMLDAA 118
>pdb|2RSG|A Chain A, Solution Structure Of The Cert Ph Domain
Length = 94
Score = 33.9 bits (76), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 16/97 (16%)
Query: 42 GYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNSVKS 101
G L+K H W RW V + S D +E RG+ C+ + +
Sbjct: 5 GVLSKWTNYIHGWQDRWVVLKNNALSYYKSEDETEYGCRGSI---CLSKAVI-------- 53
Query: 102 PSPH----LTFVVKSSDRTFHLMAPSAEAMRIWIDVI 134
+PH F + +D ++L A + + WID I
Sbjct: 54 -TPHDFDECRFDISVNDSVWYLRAQDPDHRQQWIDAI 89
>pdb|2LUL|A Chain A, Solution Nmr Structure Of Ph Domain Of Tyrosine-Protein
Kinase Tec From Homo Sapiens, Northeast Structural
Genomics Consortium (Nesg) Target Hr3504c
Length = 164
Score = 33.9 bits (76), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 53 HWNKRWFVFDRTSRSLAYYSDRSEKKQR----GATYFRCIEEVYVDHLNSVKSPSPHLTF 108
++ +R FV T L YY R+EKK R + +C+E V D + V F
Sbjct: 35 NYKERLFVL--TKSMLTYYEGRAEKKYRKGFIDVSKIKCVEIVKND--DGVIPCQNKYPF 90
Query: 109 VVKSSDRTFHLMAPSAEAMRIWI 131
V T ++ APS ++ +W+
Sbjct: 91 QVVHDANTLYIFAPSPQSRDLWV 113
>pdb|2DHK|A Chain A, Solution Structure Of The Ph Domain Of Tbc1 Domain Family
Member 2 Protein From Human
Length = 119
Score = 33.5 bits (75), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 9/95 (9%)
Query: 42 GYLNKMAGR--FHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNSV 99
GYL+K G+ W RWF +D R Y R+ + V+
Sbjct: 12 GYLSKFGGKGPIRGWKSRWFFYDE--RKCQLYYSRTAQDANPLDSIDLSSAVF-----DC 64
Query: 100 KSPSPHLTFVVKSSDRTFHLMAPSAEAMRIWIDVI 134
K+ + F +K+ R L A + +AM W+ +
Sbjct: 65 KADAEEGIFEIKTPSRVITLKAATKQAMLYWLQQL 99
>pdb|1ZM0|A Chain A, Crystal Structure Of The Carboxyl Terminal Ph Domain Of
Pleckstrin To 2.1 Angstroms
pdb|1ZM0|B Chain B, Crystal Structure Of The Carboxyl Terminal Ph Domain Of
Pleckstrin To 2.1 Angstroms
Length = 114
Score = 32.3 bits (72), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 1/95 (1%)
Query: 41 RGYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFR-CIEEVYVDHLNSV 99
+G L K R +W R F+ L YY + GA + R C+ + N
Sbjct: 12 QGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNGR 71
Query: 100 KSPSPHLTFVVKSSDRTFHLMAPSAEAMRIWIDVI 134
KS +L ++ + + + L A + + WI I
Sbjct: 72 KSEEENLFEIITADEVHYFLQAATPKERTEWIKAI 106
>pdb|2I5C|A Chain A, Crystal Structure Of The C-Terminal Ph Domain Of
Pleckstrin In Complex With D-Myo-Ins(1,2,3,4,5)p5
pdb|2I5C|B Chain B, Crystal Structure Of The C-Terminal Ph Domain Of
Pleckstrin In Complex With D-Myo-Ins(1,2,3,4,5)p5
pdb|2I5C|C Chain C, Crystal Structure Of The C-Terminal Ph Domain Of
Pleckstrin In Complex With D-Myo-Ins(1,2,3,4,5)p5
pdb|2I5F|A Chain A, Crystal Structure Of The C-Terminal Ph Domain Of
Pleckstrin In Complex With D-Myo-Ins(1,2,3,5,6)p5
Length = 109
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 1/95 (1%)
Query: 41 RGYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFR-CIEEVYVDHLNSV 99
+G L K R +W R F+ L YY + GA + R C+ + N
Sbjct: 10 QGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNGR 69
Query: 100 KSPSPHLTFVVKSSDRTFHLMAPSAEAMRIWIDVI 134
KS +L ++ + + + L A + + WI I
Sbjct: 70 KSEEENLFEIITADEVHYFLQAATPKERTEWIKAI 104
>pdb|1X05|A Chain A, Solution Structure Of The C-Terminal Ph Domain Of Human
Pleckstrin
Length = 129
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 1/95 (1%)
Query: 41 RGYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFR-CIEEVYVDHLNSV 99
+G L K R +W R F+ L YY + GA + R C+ + N
Sbjct: 21 QGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNGR 80
Query: 100 KSPSPHLTFVVKSSDRTFHLMAPSAEAMRIWIDVI 134
KS +L ++ + + + L A + + WI I
Sbjct: 81 KSEEENLFEIITADEVHYFLQAATPKERTEWIKAI 115
>pdb|1FAO|A Chain A, Structure Of The Pleckstrin Homology Domain From
Dapp1PHISH IN COMPLEX WITH INOSITOL 1,3,4,5-
Tetrakisphosphate
pdb|1FB8|A Chain A, Structure Of The Pleckstrin Homology Domain From
Dapp1/phish
Length = 126
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 33/93 (35%), Gaps = 7/93 (7%)
Query: 42 GYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNSVKS 101
GYL K G W RWF R L Y+ D Q R ++ + S
Sbjct: 22 GYLTKQGGLVKTWKTRWFTLHRN--ELKYFKD-----QMSPEPIRILDLTECSAVQFDYS 74
Query: 102 PSPHLTFVVKSSDRTFHLMAPSAEAMRIWIDVI 134
F + RTF+L A + WI ++
Sbjct: 75 QERVNCFCLVFPFRTFYLCAKTGVEADEWIKIL 107
>pdb|1XX0|A Chain A, Structure Of The C-Terminal Ph Domain Of Human Pleckstrin
Length = 127
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 1/95 (1%)
Query: 41 RGYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFR-CIEEVYVDHLNSV 99
+G L K R +W R F+ L YY + GA + R C+ + N
Sbjct: 25 QGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNGR 84
Query: 100 KSPSPHLTFVVKSSDRTFHLMAPSAEAMRIWIDVI 134
KS +L ++ + + + L A + + WI I
Sbjct: 85 KSEEENLFEIITADEVHYFLQAATPKERTEWIKAI 119
>pdb|1U27|A Chain A, Triglycine Variant Of The Arno Pleckstrin Homology Domain
In Complex With Ins(1,3,4,5)p4
pdb|1U29|A Chain A, Triglycine Variant Of The Arno Pleckstrin Homology Domain
In Complex With Ins(1,4,5)p3
Length = 129
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 25/113 (22%)
Query: 42 GYLNKMAG-RFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNSVK 100
G+L K+ G R W +RWF+ T L Y+ ++K+ RG +E + + ++ +
Sbjct: 15 GWLLKLGGGRVKTWKRRWFIL--TDNCLYYFEYTTDKEPRGIIP---LENLSIREVDDPR 69
Query: 101 SPSPHLTF-------------------VVKSSDRTFHLMAPSAEAMRIWIDVI 134
P+ + VV+ + + + AP+ E WI I
Sbjct: 70 KPNCFELYIPNNKGQLIKACKTEADGRVVEGNHMVYRISAPTQEEKDEWIKSI 122
>pdb|2COD|A Chain A, Solution Structure Of The N-Terminal Ph Domain Of Arap2
Protein From Human
Length = 115
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 11/82 (13%)
Query: 56 KRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNSVKSPSPHLTFVVKSSDR 115
KRW FD S++YY++ E +G I V V N F V ++ R
Sbjct: 27 KRWVKFD--GLSISYYNNEKEMYSKGIIPLSAISTVRVQGDNK---------FEVVTTQR 75
Query: 116 TFHLMAPSAEAMRIWIDVIFSG 137
TF E WI ++ +
Sbjct: 76 TFVFRVEKEEERNDWISILLNA 97
>pdb|1U2B|A Chain A, Triglycine Variant Of The Grp1 Pleckstrin Homology Domain
Unliganded
Length = 138
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 21/111 (18%)
Query: 42 GYLNKMAG-RFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGAT-----YFRCIEEVYVDH 95
G+L K+ G R W +RWF+ T L Y+ ++K+ RG R +E+ +
Sbjct: 19 GWLLKLGGGRVKTWKRRWFIL--TDNCLYYFEYTTDKEPRGIIPLENLSIREVEDPRKPN 76
Query: 96 LNSVKSPSPHLTFVVKSSDR------------TFHLMAPSAEAMRIWIDVI 134
+ +PS H V+K+ + + APS E W+ I
Sbjct: 77 CFELYNPS-HKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSI 126
>pdb|2DYM|A Chain A, The Crystal Structure Of Saccharomyces Cerevisiae Atg5-
Atg16(1-46) Complex
pdb|2DYM|C Chain C, The Crystal Structure Of Saccharomyces Cerevisiae Atg5-
Atg16(1-46) Complex
pdb|2DYM|E Chain E, The Crystal Structure Of Saccharomyces Cerevisiae Atg5-
Atg16(1-46) Complex
pdb|2DYM|G Chain G, The Crystal Structure Of Saccharomyces Cerevisiae Atg5-
Atg16(1-46) Complex
pdb|2DYO|A Chain A, The Crystal Structure Of Saccharomyces Cerevisiae Atg5-
Atg16(1-57) Complex
Length = 297
Score = 30.8 bits (68), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 51 FHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNSVKSPSP-HLTFV 109
FH W + F+ + +S+++ S +K G+ R ++ +++ N + S P H+ +
Sbjct: 148 FHQWKQVCFILNGSSKAIMSLSVNEARKFWGSVITRNFQD-FIEISNKISSSRPRHIPLI 206
Query: 110 VKSS--DRTFHLMAPS 123
+++S TF + P+
Sbjct: 207 IQTSRTSGTFRISQPT 222
>pdb|1V89|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of
Human Kiaa0053 Protein
Length = 118
Score = 30.8 bits (68), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 13/101 (12%)
Query: 42 GYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFR--CIEEVYVDHLNSV 99
G+L K +W +R+FV ++ L YY D + K +G Y I+E+ + +
Sbjct: 12 GWLKKQRSIVKNWQQRYFVL--RAQQLYYYKDEEDTKPQGCMYLPGCTIKEIATNPEEAG 69
Query: 100 KSPSPHLTFVVKSSDR------TFHLMAPSAEAMRIWIDVI 134
K + S D+ ++ LMA S M W+ +
Sbjct: 70 KF---VFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFL 107
>pdb|3W1S|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg12-Atg5
Conjugate Bound To The N-Terminal Domain Of Atg16
Length = 284
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 51 FHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNSVKSPSP-HLTFV 109
FH W + F+ + +S+++ S +K G+ R ++ +++ N + S P H+ +
Sbjct: 145 FHQWKQVCFILNGSSKAIMSLSVNEARKFWGSVITRNFQD-FIEISNKISSSRPRHIPLI 203
Query: 110 VKSS--DRTFHLMAPS 123
+++S TF + P+
Sbjct: 204 IQTSRTSGTFRISQPT 219
>pdb|1H10|A Chain A, High Resolution Structure Of The Pleckstrin Homology
Domain Of Protein Kinase BAKT BOUND TO
Ins(1,3,4,5)-Tetrakisphophate
Length = 125
Score = 29.3 bits (64), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 11/108 (10%)
Query: 42 GYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNSVKS 101
G+L+K W R+F+ + Y + QR A V L +
Sbjct: 12 GWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNF--SVAQCQLXKTER 69
Query: 102 PSPHLTFVVKS------SDRTFHLMAPSAEAMRIWIDVIFSGAEGYQE 143
P P+ TF+++ +RTFH+ P E W I + A+G ++
Sbjct: 70 PRPN-TFIIRCLQWTTVIERTFHVETP--EEREEWTTAIQTVADGLKK 114
>pdb|2UZS|A Chain A, A Transforming Mutation In The Pleckstrin Homology Domain
Of Akt1 In Cancer (Akt1-Ph_e17k)
Length = 125
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 11/108 (10%)
Query: 42 GYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNSVKS 101
G+L+K W R+F+ + Y + QR A V L +
Sbjct: 12 GWLHKRGKYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNF--SVAQCQLMKTER 69
Query: 102 PSPHLTFVVKS------SDRTFHLMAPSAEAMRIWIDVIFSGAEGYQE 143
P P+ TF+++ +RTFH+ P E W I + A+G ++
Sbjct: 70 PRPN-TFIIRCLQWTTVIERTFHVETP--EEREEWTTAIQTVADGLKK 114
>pdb|2UZR|A Chain A, A Transforming Mutation In The Pleckstrin Homology Domain
Of Akt1 In Cancer (Akt1-Ph_e17k)
Length = 124
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 11/108 (10%)
Query: 42 GYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNSVKS 101
G+L+K W R+F+ + Y + QR A V L +
Sbjct: 11 GWLHKRGKYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNF--SVAQCQLMKTER 68
Query: 102 PSPHLTFVVKS------SDRTFHLMAPSAEAMRIWIDVIFSGAEGYQE 143
P P+ TF+++ +RTFH+ P E W I + A+G ++
Sbjct: 69 PRPN-TFIIRCLQWTTVIERTFHVETP--EEREEWTTAIQTVADGLKK 113
>pdb|3O96|A Chain A, Crystal Structure Of Human Akt1 With An Allosteric
Inhibitor
Length = 446
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 11/113 (9%)
Query: 37 ATSCRGYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHL 96
A G+L+K W R+F+ + Y + QR A V L
Sbjct: 8 AIVKEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNF--SVAQCQL 65
Query: 97 NSVKSPSPHLTFVVKS------SDRTFHLMAPSAEAMRIWIDVIFSGAEGYQE 143
+ P P+ TF+++ +RTFH+ P E W I + A+G ++
Sbjct: 66 MKTERPRPN-TFIIRCLQWTTVIERTFHVETP--EEREEWTTAIQTVADGLKK 115
>pdb|2UVM|A Chain A, Structure Of Pkbalpha Ph Domain In Complex With A Novel
Inositol Headgroup Surrogate, Benzene 1,2,3,4-
Tetrakisphosphate
Length = 123
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 11/108 (10%)
Query: 42 GYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNSVKS 101
G+L+K W R+F+ + Y + QR A V L +
Sbjct: 10 GWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNF--SVAQCQLMKTER 67
Query: 102 PSPHLTFVVKS------SDRTFHLMAPSAEAMRIWIDVIFSGAEGYQE 143
P P+ TF+++ +RTFH+ P E W I + A+G ++
Sbjct: 68 PRPN-TFIIRCLQWTTVIERTFHVETP--EEREEWTTAIQTVADGLKK 112
>pdb|4EJN|A Chain A, Crystal Structure Of Autoinhibited Form Of Akt1 In Complex
With N-(4-
(5-(3-Acetamidophenyl)-2-(2-Aminopyridin-3-Yl)-3h-
Imidazo[4,5- B]pyridin-3-Yl)benzyl)-3-Fluorobenzamide
Length = 446
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 11/113 (9%)
Query: 37 ATSCRGYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHL 96
A G+L+K W R+F+ + Y + QR A V L
Sbjct: 5 AIVKEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNF--SVAQCQL 62
Query: 97 NSVKSPSPHLTFVVKS------SDRTFHLMAPSAEAMRIWIDVIFSGAEGYQE 143
+ P P+ TF+++ +RTFH+ P E W I + A+G ++
Sbjct: 63 MKTERPRPN-TFIIRCLQWTTVIERTFHVETP--EEREEWTTAIQTVADGLKK 112
>pdb|1UNR|A Chain A, Crystal Structure Of The Ph Domain Of Pkb Alpha In Complex
With A Sulfate Molecule
pdb|1UNQ|A Chain A, High Resolution Crystal Structure Of The Pleckstrin
Homology Domain Of Protein Kinase BAKT BOUND TO INS
(1,3,4,5)-Tetrakisphophate
Length = 125
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 11/108 (10%)
Query: 42 GYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNSVKS 101
G+L+K W R+F+ + Y + QR A V L +
Sbjct: 12 GWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNF--SVAQCQLMKTER 69
Query: 102 PSPHLTFVVKS------SDRTFHLMAPSAEAMRIWIDVIFSGAEGYQE 143
P P+ TF+++ +RTFH+ P E W I + A+G ++
Sbjct: 70 PRPN-TFIIRCLQWTTVIERTFHVETP--EEREEWTTAIQTVADGLKK 114
>pdb|1UNP|A Chain A, Crystal Structure Of The Pleckstrin Homology Domain Of Pkb
Alpha
Length = 121
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 11/108 (10%)
Query: 42 GYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNSVKS 101
G+L+K W R+F+ + Y + QR A V L +
Sbjct: 10 GWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNF--SVAQCQLMKTER 67
Query: 102 PSPHLTFVVKS------SDRTFHLMAPSAEAMRIWIDVIFSGAEGYQE 143
P P+ TF+++ +RTFH+ P E W I + A+G ++
Sbjct: 68 PRPN-TFIIRCLQWTTVIERTFHVETP--EEREEWTTAIQTVADGLKK 112
>pdb|3I5P|A Chain A, Nup170(Aa979-1502), S.Cerevisiae
Length = 525
Score = 28.5 bits (62), Expect = 1.3, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 50 RFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNSVKSPSPHLTFV 109
R +++KR V+D +L + +EKKQ T ++ + + + VK
Sbjct: 117 RKQYYDKRILVYDLVFDTLIKVDELAEKKQSSKTQ----NQISISNDDEVKLRQKSYEAA 172
Query: 110 VKSSDRTFH 118
+K +DR FH
Sbjct: 173 LKYNDRLFH 181
>pdb|1X1G|A Chain A, Solution Structure Of The C-Terminal Ph Domain Of Human
Pleckstrin 2
Length = 129
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 11/102 (10%)
Query: 41 RGYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYF-------RCIEEVYV 93
+GYL K + +W R FV + L YY D S+++ R F +E+ V
Sbjct: 21 QGYLAKQGHKRKNWKVRRFVLRKDPAFLHYY-DPSKEENRPVGGFSLRGSLVSALEDNGV 79
Query: 94 DHLNSVKSPSPHLTFVVKSSDRTFHLMAPSAEAMRI-WIDVI 134
VK F V + D T + + S++A R WI+ I
Sbjct: 80 P--TGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAI 119
>pdb|2D9X|A Chain A, Solution Structure Of The Ph Domain Of Oxysterol Binding
Protein-Related Protein 11 From Human
Length = 120
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 11/93 (11%)
Query: 42 GYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNSVKS 101
GYL K W R+FV + + L Y+ + + Q+ + +V S
Sbjct: 12 GYLMKYTNLVTGWQYRFFVLNNEAGLLEYFVNEQSRNQKPRGTLQLA--------GAVIS 63
Query: 102 PS---PHLTFVVKSSDRTFHLMAPSAEAMRIWI 131
PS H V +S + L A A+ + W+
Sbjct: 64 PSDEDSHTFTVNAASGEQYKLRATDAKERQHWV 96
>pdb|3SNP|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SNP|B Chain B, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SN2|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Transferrin Receptor Ire B Rna
Length = 908
Score = 26.9 bits (58), Expect = 3.7, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 7/39 (17%)
Query: 108 FVVKSSDRTFHLMAPSAEAMRIWIDVIFSGAEGYQEFGH 146
F+ K + +T HL PS E + + F AE YQ+ GH
Sbjct: 752 FLNKQAPQTIHL--PSGETLDV-----FDAAERYQQEGH 783
>pdb|3UT2|A Chain A, Crystal Structure Of Fungal Magkatg2
pdb|3UT2|B Chain B, Crystal Structure Of Fungal Magkatg2
Length = 764
Score = 26.6 bits (57), Expect = 5.3, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 58 WFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNSVK 100
W DR SRS Y R++ R I EVY ++ N K
Sbjct: 698 WVGTDRKSRSEKYKGSRADLVFGSHAELRAIAEVYAENGNQEK 740
>pdb|3BG9|A Chain A, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
pdb|3BG9|B Chain B, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
pdb|3BG9|C Chain C, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
pdb|3BG9|D Chain D, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
Length = 718
Score = 25.8 bits (55), Expect = 8.1, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 63 RTSRSLAYYSDRSEKKQRGATYFRCIEEV 91
RT SL YY +E+ R T+ CI+++
Sbjct: 255 RTKYSLQYYMGLAEELVRAGTHILCIKDM 283
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.136 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,440,272
Number of Sequences: 62578
Number of extensions: 155406
Number of successful extensions: 478
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 456
Number of HSP's gapped (non-prelim): 42
length of query: 146
length of database: 14,973,337
effective HSP length: 90
effective length of query: 56
effective length of database: 9,341,317
effective search space: 523113752
effective search space used: 523113752
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)