RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17150
(146 letters)
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.55.1.1
Length = 117
Score = 114 bits (288), Expect = 3e-34
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Query: 39 SCRGYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDH--L 96
S G L K W RWFV D+T L YY R + + +G +E V +
Sbjct: 9 SYEGILYKKGAFMKPWKARWFVLDKTKHQLRYYDHRMDTECKGVIDLAEVEAVAPGTPTI 68
Query: 97 NSVKSPSPHLTFVVKSSDRTFHLMAPSAEAMRIWIDVI 134
+ K+ F VK++ R ++ A + + W+D I
Sbjct: 69 GAPKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDRI 106
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the
pleckstrin homology domain, structural genomics; NMR
{Mus musculus} SCOP: b.55.1.1
Length = 126
Score = 93.1 bits (231), Expect = 2e-25
Identities = 17/99 (17%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Query: 40 CRGYLN-KMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNS 98
G+L+ + + +R+F+ D + L +Y D + GA ++ Y+ ++
Sbjct: 17 ICGFLDIEDNENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKVSI 76
Query: 99 V---KSPSPHLTFVVKSSDRTFHLMAPSAEAMRIWIDVI 134
+ P FV+ + + + L A + ++ W++ +
Sbjct: 77 ATPKQKPKTPFCFVINALSQRYFLQANDQKDLKDWVEAL 115
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid
binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2i5c_A* 1zm0_A
Length = 109
Score = 90.5 bits (225), Expect = 9e-25
Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 1/96 (1%)
Query: 40 CRGYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNSV 99
+G L K R +W R F+ L YY + GA + R V+ ++
Sbjct: 9 KQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNG 68
Query: 100 KSPSPHLTFVVKSSDRT-FHLMAPSAEAMRIWIDVI 134
+ F + ++D + L A + + WI I
Sbjct: 69 RKSEEENLFEIITADEVHYFLQAATPKERTEWIKAI 104
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 119
Score = 89.4 bits (222), Expect = 3e-24
Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 9/95 (9%)
Query: 42 GYLNKMAGR--FHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNSV 99
GYL+K G+ W RWF +D L Y + + + D
Sbjct: 12 GYLSKFGGKGPIRGWKSRWFFYDERKCQLYYSRTAQDANPLDSID---LSSAVFD----C 64
Query: 100 KSPSPHLTFVVKSSDRTFHLMAPSAEAMRIWIDVI 134
K+ + F +K+ R L A + +AM W+ +
Sbjct: 65 KADAEEGIFEIKTPSRVITLKAATKQAMLYWLQQL 99
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Length = 129
Score = 87.1 bits (216), Expect = 3e-23
Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 1/96 (1%)
Query: 40 CRGYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNSV 99
+G L K R +W R F+ L YY + GA + R V+ ++
Sbjct: 20 KQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNG 79
Query: 100 KSPSPHLTFVVKSSDRT-FHLMAPSAEAMRIWIDVI 134
+ F + ++D + L A + + WI I
Sbjct: 80 RKSEEENLFEIITADEVHYFLQAATPKERTEWIKAI 115
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides;
pleckstrin, inositol tetrakisphosphate signal
transduction protein, adaptor protein; HET: 4IP; 1.80A
{Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Length = 126
Score = 86.3 bits (214), Expect = 6e-23
Identities = 24/112 (21%), Positives = 36/112 (32%), Gaps = 7/112 (6%)
Query: 23 AGHQLEACSHLTLDATSCRGYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGA 82
G + + GYL K G W RWF R L Y+ D+ +
Sbjct: 3 TGRTEDDLVPTAPSLGTKEGYLTKQGGLVKTWKTRWFTLHR--NELKYFKDQMSPEPIRI 60
Query: 83 TYFRCIEEVYVDHLNSVKSPSPHLTFVVKSSDRTFHLMAPSAEAMRIWIDVI 134
V D+ + F + RTF+L A + WI ++
Sbjct: 61 LDLTECSAVQFDYSQERVN-----CFCLVFPFRTFYLCAKTGVEADEWIKIL 107
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid
degradation, phosphatidylinositol (3, 4)-bisphosphate,
signalling; HET: CIT; 1.40A {Homo sapiens} SCOP:
b.55.1.1
Length = 125
Score = 84.8 bits (210), Expect = 3e-22
Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 4/99 (4%)
Query: 36 DATSCRGYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDH 95
A GY K +W +R+F D ++ Y+ EK+ + + +V
Sbjct: 12 SAVIKAGYCVKQGAVMKNWKRRYFQLDE--NTIGYFKSELEKEPLRVIPLKEVHKV--QE 67
Query: 96 LNSVKSPSPHLTFVVKSSDRTFHLMAPSAEAMRIWIDVI 134
F + ++ RTF++ A S E M WI +
Sbjct: 68 CKQSDIMMRDNLFEIVTTSRTFYVQADSPEEMHSWIKAV 106
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 115
Score = 82.4 bits (204), Expect = 2e-21
Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 6/93 (6%)
Query: 42 GYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNSVKS 101
GY+ K R +W +RWFV ++YY K ++G V
Sbjct: 12 GYMMKKGHRRKNWTERWFVLKPNI--ISYYVSEDLKDKKGDILLDENCCVES----LPDK 65
Query: 102 PSPHLTFVVKSSDRTFHLMAPSAEAMRIWIDVI 134
F+VK D+TF + A + + WI I
Sbjct: 66 DGKKCLFLVKCFDKTFEISASDKKKKQEWIQAI 98
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH
domains (ARAP) 2, PH domain, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Length = 115
Score = 80.1 bits (198), Expect = 1e-20
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 12/94 (12%)
Query: 42 GYLNKMAGRFHH-WNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNSVK 100
G+L+K++ + + KRW FD S++YY++ E +G I V V N
Sbjct: 12 GWLDKLSPQGKRMFQKRWVKFDG--LSISYYNNEKEMYSKGIIPLSAISTVRVQGDN--- 66
Query: 101 SPSPHLTFVVKSSDRTFHLMAPSAEAMRIWIDVI 134
F V ++ RTF E WI ++
Sbjct: 67 ------KFEVVTTQRTFVFRVEKEEERNDWISIL 94
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 129
Score = 76.1 bits (187), Expect = 7e-19
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Query: 40 CRGYLNKMAGRFHHWNKRWFVFDRTSRSLAYY-SDRSEKKQRGATYFR--CIEEVYVDHL 96
+GYL K + +W R FV + L YY + E + G R + + + +
Sbjct: 20 KQGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLRGSLVSALEDNGV 79
Query: 97 NS-VKSPSPHLTFVVKSSDRT-FHLMAPSAEAMRIWIDVI 134
+ VK F V + D T +++ A S WI+ I
Sbjct: 80 PTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAI 119
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 149
Score = 75.9 bits (186), Expect = 1e-18
Identities = 16/114 (14%), Positives = 33/114 (28%), Gaps = 8/114 (7%)
Query: 22 AAGHQLEACSHLTLDATSCRGYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRG 81
++G + +T G+L + + W +L +Y+D+
Sbjct: 2 SSGSSGQERLKITALPLYFEGFLLIKRSGYREYEHYWTELRG--TTLFFYTDKKSIIYVD 59
Query: 82 ATYFRCIEEVYVDHLNSVKSPS-PHLTFVVKSSDRTFHLMAPSAEAMRIWIDVI 134
++ V + L S F + L + E+ W I
Sbjct: 60 -----KLDIVDLTCLTEQNSTEKNCAKFTLVLPKEEVQLKTENTESGEEWRGFI 108
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Length = 228
Score = 77.0 bits (189), Expect = 2e-18
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 14/100 (14%)
Query: 40 CRGYLNKMAGRFHH-----WNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVD 94
+G+L+ G W KRWFV ++ L Y+ + SE+K +G R +E+
Sbjct: 60 KQGWLHNNGGGSSTLSRRNWKKRWFVLRQSK--LMYFENDSEEKLKGTVEVRSAKEI--- 114
Query: 95 HLNSVKSPSPHLTFVVKSSDRTFHLMAPSAEAMRIWIDVI 134
+ + + + +DRTFHL+A S E W V+
Sbjct: 115 ----IDNTNKENGIDIIMADRTFHLIAESPEDASQWFSVL 150
Score = 35.7 bits (82), Expect = 0.003
Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 60 VFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNSVKSPSPHLTFVVKSSDRTFHL 119
V T + + D Q ++ +D + + SP +FV+ +++R H
Sbjct: 153 VHSSTDQEIREMHDEQANPQ---NAVGTLDVGLIDSVCASDSPDRPNSFVIITANRVLHC 209
Query: 120 MAPSAEAMRIWIDVI 134
A + E M WI ++
Sbjct: 210 NADTPEEMHHWITLL 224
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology,
lipid transport; NMR {Homo sapiens}
Length = 94
Score = 73.6 bits (181), Expect = 2e-18
Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 8/93 (8%)
Query: 42 GYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNSVKS 101
G L+K H W RW V + +L+YY E + C + +
Sbjct: 5 GVLSKWTNYIHGWQDRWVVLK--NNALSYYKSEDETEYG------CRGSICLSKAVITPH 56
Query: 102 PSPHLTFVVKSSDRTFHLMAPSAEAMRIWIDVI 134
F + +D ++L A + + WID I
Sbjct: 57 DFDECRFDISVNDSVWYLRAQDPDHRQQWIDAI 89
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain,
phosphatidylinositol binding, structural genomics; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 118
Score = 73.6 bits (181), Expect = 4e-18
Identities = 21/100 (21%), Positives = 33/100 (33%), Gaps = 7/100 (7%)
Query: 40 CRGYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNSV 99
G+L K +W +R+FV L YY D + K +G Y +
Sbjct: 10 KMGWLKKQRSIVKNWQQRYFVLRAQ--QLYYYKDEEDTKPQGCMYLPGCTIKEIATNPEE 67
Query: 100 KSP-----SPHLTFVVKSSDRTFHLMAPSAEAMRIWIDVI 134
P + ++ LMA S M W+ +
Sbjct: 68 AGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFL 107
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus}
SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A*
1u29_A* 1u27_A*
Length = 127
Score = 73.5 bits (180), Expect = 6e-18
Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 18/111 (16%)
Query: 40 CRGYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGA---TYFRCIEEVYVDHL 96
G+L K+ GR W +RWF+ L Y+ ++K+ RG E +
Sbjct: 7 REGWLLKLGGRVKTWKRRWFILTDN--CLYYFEYTTDKEPRGIIPLENLSIREVLDPRKP 64
Query: 97 NSVKSPSP-------------HLTFVVKSSDRTFHLMAPSAEAMRIWIDVI 134
N + +P VV+ + + + APS E W+ I
Sbjct: 65 NCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSI 115
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel
beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo
sapiens} PDB: 3via_A 2dhi_A
Length = 112
Score = 73.0 bits (179), Expect = 7e-18
Identities = 19/99 (19%), Positives = 32/99 (32%), Gaps = 7/99 (7%)
Query: 42 GYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFR--CIEEVYVDHLNSV 99
G+L + + W K WF L YY D++ + + CI
Sbjct: 9 GWLLRQSTILKRWKKNWFDLWSDGH-LIYYDDQTRQNIEDKVHMPMDCINIRTGQECRDT 67
Query: 100 KSPS----PHLTFVVKSSDRTFHLMAPSAEAMRIWIDVI 134
+ P + +V +T L A S + W +
Sbjct: 68 QPPDGKSKDCMLQIVCRDGKTISLCAESTDDCLAWKFTL 106
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 113
Score = 71.2 bits (175), Expect = 3e-17
Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 5/93 (5%)
Query: 42 GYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNSVKS 101
GYL K F+ W W V + +Y +S+ +G ++ +
Sbjct: 9 GYLVKKGSVFNTWKPMWVVLLED--GIEFYKKKSDNSPKGMIP---LKGSTLTSPCQDFG 63
Query: 102 PSPHLTFVVKSSDRTFHLMAPSAEAMRIWIDVI 134
+ + + + A E W+ I
Sbjct: 64 KRMFVFKITTTKQQDHFFQAAFLEERDAWVRDI 96
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH
domain, phret1, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 130
Score = 69.2 bits (169), Expect = 3e-16
Identities = 17/100 (17%), Positives = 29/100 (29%), Gaps = 7/100 (7%)
Query: 41 RGYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFR--CIEEVYVDHLNS 98
G+L + + W + WF L YY D + + + +
Sbjct: 11 GGWLWRQSSILRRWKRNWFALWLDGT-LGYYHDETAQDEEDRVVIHFNVRDIKVGQECQD 69
Query: 99 VKSPS----PHLTFVVKSSDRTFHLMAPSAEAMRIWIDVI 134
V+ P L V HL A + + W +
Sbjct: 70 VQPPEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTAL 109
>2d9x_A Oxysterol binding protein-related protein 11; PH domain,
OSBP-related protein 11, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 120
Score = 68.0 bits (166), Expect = 8e-16
Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 7/95 (7%)
Query: 41 RGYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNSVK 100
GYL K W R+FV + + L Y+ + + Q + + +
Sbjct: 11 YGYLMKYTNLVTGWQYRFFVLNNEAGLLEYFVNEQSRNQ------KPRGTLQLAGAVISP 64
Query: 101 SPSPHLTFVVKSSD-RTFHLMAPSAEAMRIWIDVI 134
S TF V ++ + L A A+ + W+ +
Sbjct: 65 SDEDSHTFTVNAASGEQYKLRATDAKERQHWVSRL 99
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction;
1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Length = 123
Score = 67.9 bits (166), Expect = 9e-16
Identities = 22/96 (22%), Positives = 32/96 (33%), Gaps = 5/96 (5%)
Query: 40 CRGYLNKMAGR-FHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNS 98
RG+L+K W +RWFV L YY D E+ G+
Sbjct: 13 IRGWLHKQDSSGLRLWKRRWFVLSGHC--LFYYKDSREESVLGSVLLPSYNIRPDGPGAP 70
Query: 99 VKSPSPHLTFVVKSSDRTFHLMAPSAEAMRIWIDVI 134
RT+ L A + E +R W+ +
Sbjct: 71 RGRR--FTFTAEHPGMRTYVLAADTLEDLRGWLRAL 104
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain,
signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Length = 108
Score = 67.1 bits (164), Expect = 1e-15
Identities = 24/99 (24%), Positives = 34/99 (34%), Gaps = 7/99 (7%)
Query: 40 CRGYLNKMAGR----FHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDH 95
+GYL K + W KRW V R YY++ K+ +G + H
Sbjct: 5 KQGYLEKKSKDHSFFGSEWQKRWCVVSRGL--FYYYANEKSKQPKGTFLIKGYSVRMAPH 62
Query: 96 LNSVKSPSPHLTFVVKSSDRTFHLMAPSAEAMRIWIDVI 134
L + RT+ A S R W+D I
Sbjct: 63 LRRDSK-KESCFELTSQDRRTYEFTATSPAEARDWVDQI 100
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH
domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 117
Score = 67.4 bits (165), Expect = 1e-15
Identities = 28/97 (28%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 40 CRGYLNKMAGR-FHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNS 98
G+L K A WNKRWFV L YY D E+ G+ + V +
Sbjct: 13 KAGWLFKQASSGVKQWNKRWFVLVDRC--LFYYKDEKEESILGSIP---LLSFRVAAVQP 67
Query: 99 VKSPSPHLTFVVKSSD-RTFHLMAPSAEAMRIWIDVI 134
+ S TF + + RT+ A S E WI +
Sbjct: 68 SDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAM 104
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain,
PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 122
Score = 67.5 bits (165), Expect = 1e-15
Identities = 27/115 (23%), Positives = 40/115 (34%), Gaps = 5/115 (4%)
Query: 21 EAAGHQLEACSHLTLDATSCRGYLNKMAGR-FHHWNKRWFVFDRTSRSLAYYSDRSEKKQ 79
+ G + + + G+L K A WNKRWFV L YY D E+
Sbjct: 5 SSGGKRSHSMKRNPNAPVTKAGWLFKQASSGVKQWNKRWFVLVDRC--LFYYKDEKEESI 62
Query: 80 RGATYFRCIEEVYVDHLNSVKSPSPHLTFVVKSSDRTFHLMAPSAEAMRIWIDVI 134
G+ V +++ H + RT+ A S E WI +
Sbjct: 63 LGSIPLLSFRVAAVQPSDNISRK--HTFKAEHAGVRTYFFSAESPEEQEAWIQAM 115
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual
dimerization induced by V derived sequence, signaling
protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Length = 148
Score = 66.1 bits (161), Expect = 7e-15
Identities = 20/110 (18%), Positives = 31/110 (28%), Gaps = 7/110 (6%)
Query: 29 ACSHLTLDATSCRGYLNKMAGR----FHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATY 84
L GYL K W KRW +T YY +K+Q+G
Sbjct: 8 GIPAQDLPFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTV--FYYYGSDKDKQQKGEFA 65
Query: 85 FRCIEEVYVDHLNSVKSPSPHLTFVVKSSDRTFHLMAPSAEAMRIWIDVI 134
+ + L + R + A S + W+ +
Sbjct: 66 IDGYDVRMNNTL-RKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQL 114
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH
domain, signaling protein; 2.60A {Mus musculus} SCOP:
b.55.1.1 PDB: 2otx_A
Length = 211
Score = 67.5 bits (164), Expect = 8e-15
Identities = 23/127 (18%), Positives = 38/127 (29%), Gaps = 7/127 (5%)
Query: 12 DSLDLRQHIEAAGHQLEACSHLTLDATSCRGYLNKMAGR----FHHWNKRWFVFDRTSRS 67
+ D + G+Q + L GYL K W KRW +T
Sbjct: 80 ERYDKDDDGPSDGNQFPPIAAQDLPFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTV-- 137
Query: 68 LAYYSDRSEKKQRGATYFRCIEEVYVDHLNSVKSPSPHLTFVVKSSDRTFHLMAPSAEAM 127
YY +K+Q+G + + L + R + A S +
Sbjct: 138 FYYYGSDKDKQQKGEFAIDGYDVRMNNTL-RKDGKKDCCFEICAPDKRIYQFTAASPKDA 196
Query: 128 RIWIDVI 134
W+ +
Sbjct: 197 EEWVQQL 203
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain,
pleckstrin homology domain-containing protein family A
member 5; NMR {Homo sapiens}
Length = 128
Score = 65.2 bits (159), Expect = 1e-14
Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 7/97 (7%)
Query: 40 CRGYLNKMAGR-FHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNS 98
RG+L K W KRWFV L YY D E+ G+ + + +
Sbjct: 23 RRGWLYKQDSTGMKLWKKRWFVLSDLC--LFYYRDEKEEGILGSILLPSFQIALLTSEDH 80
Query: 99 VKSPSPHLTF-VVKSSDRTFHLMAPSAEAMRIWIDVI 134
+ F + RT++ + + M +W+ +
Sbjct: 81 INRK---YAFKAAHPNMRTYYFCTDTGKEMELWMKAM 114
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4;
pleckstrin homoloy domain, signal transduction,
structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Length = 109
Score = 64.7 bits (158), Expect = 1e-14
Identities = 16/93 (17%), Positives = 29/93 (31%), Gaps = 6/93 (6%)
Query: 42 GYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNSVKS 101
GYL + G W WFV L Y+ + + + L ++
Sbjct: 12 GYLYRSKGSKKPWKHLWFVIKNK--VLYTYAASEDVAALESQ----PLLGFTVTLVKDEN 65
Query: 102 PSPHLTFVVKSSDRTFHLMAPSAEAMRIWIDVI 134
+ ++ + A A + + WID
Sbjct: 66 SESKVFQLLHKGMVFYVFKADDAHSTQRWIDAF 98
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH
domain, lipid-binding, membrane, membrane protein; 1.90A
{Homo sapiens} PDB: 2kcj_A
Length = 103
Score = 60.6 bits (147), Expect = 3e-13
Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 9/95 (9%)
Query: 41 RGYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNSVK 100
G L K W RWFV D L+YY + + + + +
Sbjct: 2 EGVLYKWTNYLTGWQPRWFVLDN--GILSYYDSQDDVCKG------SKGSIKMAVCEIKV 53
Query: 101 SPSPHLTF-VVKSSDRTFHLMAPSAEAMRIWIDVI 134
+ + ++ ++ F++ A +A + W+ +
Sbjct: 54 HSADNTRMELIIPGEQHFYMKAVNAAERQRWLVAL 88
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA,
SKIP, complex, virulence, cytoplasm, membrane,
polymorphism, signaling protein; 2.60A {Homo sapiens}
PDB: 3hw2_B
Length = 112
Score = 60.2 bits (146), Expect = 7e-13
Identities = 22/101 (21%), Positives = 34/101 (33%), Gaps = 10/101 (9%)
Query: 39 SCRGYLNKMAGRFH----HWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVD 94
+ G L+ AG + HW + V L Y DR++ + +
Sbjct: 1 TKEGMLHYKAGTSYLGKEHWKTCFVVLSNGI--LYQYPDRTDVIPLLSVNMGGEQCGGCR 58
Query: 95 HLNSVKSPSPHLTFVVKSSD-RTFHLMAPSAEAMRIWIDVI 134
+ + PH F V SD L A S M W+ +
Sbjct: 59 R--ANTTDRPH-AFQVILSDRPCLELSAESEAEMAEWMQHL 96
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain,
PIP2 binding site, structural genomics; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 126
Score = 58.4 bits (141), Expect = 5e-12
Identities = 17/96 (17%), Positives = 30/96 (31%), Gaps = 5/96 (5%)
Query: 42 GYLNKMAGR-FHHWNKRWFVFDRTSRSLAYYSDRSEKKQ--RGATYFRCIEEVYVDHLNS 98
GYL + + W KR+FV + S+ EKK + Y D
Sbjct: 12 GYLWAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYTVDYTDPQPG 71
Query: 99 VKSPSPHLTFVVKSSDRTFHLMAPSAEAMRIWIDVI 134
++ F T + + +W+ +
Sbjct: 72 LE--GGRAFFNAVKEGDTVIFASDDEQDRILWVQAM 105
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; PH domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 57.5 bits (139), Expect = 6e-12
Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 12/94 (12%)
Query: 42 GYLNKMAGRFHH-WNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNSVK 100
GYL K + W +R L S ++ C + +
Sbjct: 14 GYLLKKSDGIRKVWQRRKCSVKN--GILTISHATSNRQPAKLNLLTCQVKPNAEDKK--- 68
Query: 101 SPSPHLTFVVKSSDRTFHLMAPSAEAMRIWIDVI 134
+F + S +RT+H A + WI V+
Sbjct: 69 ------SFDLISHNRTYHFQAEDEQDYVAWISVL 96
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural
genomics consortium, GTPase activation, SGC, binding,
nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens}
PDB: 3feh_A* 3fm8_C 3mdb_C*
Length = 386
Score = 59.7 bits (144), Expect = 1e-11
Identities = 23/97 (23%), Positives = 33/97 (34%), Gaps = 6/97 (6%)
Query: 42 GYLNKMAGR-FHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNSVK 100
GY+ K + + KRWF D R L Y+ D + RG + E Y
Sbjct: 273 GYMEKTGPKQTEGFRKRWFTMD--DRRLMYFKDPLDAFARGEVFIGSKESGYTVLHGFPP 330
Query: 101 SPSPH---LTFVVKSSDRTFHLMAPSAEAMRIWIDVI 134
S H + + DR F + R W+
Sbjct: 331 STQGHHWPHGITIVTPDRKFLFACETESDQREWVAAF 367
Score = 32.0 bits (72), Expect = 0.050
Identities = 15/117 (12%), Positives = 35/117 (29%), Gaps = 1/117 (0%)
Query: 30 CSHLTLDATSCRGYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIE 89
A G+L K + R FV +L Y++ K+ + +
Sbjct: 138 EKQEPYSAGYREGFLWKRGRDNGQFLSRKFVLTEREGALKYFNRNDAKEPKAVMKIEHLN 197
Query: 90 EVYVDHLNSVKSPSPHLTFVVKSSDRTFHLMAPSAEAMRIWIDVIFSGAEGYQEFGH 146
+ +T++ +S R + + + W + + + Y +
Sbjct: 198 ATFQPAKIG-HPHGLQVTYLKDNSTRNIFIYHEDGKEIVDWFNALRAARFHYLQVAF 253
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology
domain, PKB, AKT, phosphoinositide,
serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo
sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A*
2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Length = 125
Score = 57.2 bits (138), Expect = 1e-11
Identities = 15/99 (15%), Positives = 28/99 (28%), Gaps = 7/99 (7%)
Query: 40 CRGYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIE----EVYVDH 95
G+L+K W R+F+ + Y +R + + ++
Sbjct: 10 KEGWLHKRGEYIKTWRPRYFLLKNDG-TFIGYKERPQDVDQREAPLNNFSVAQCQLMKTE 68
Query: 96 LNSVKSPSPHLTFVVKSSDRTFHLMAPSAEAMRIWIDVI 134
+ +RTFH + E W I
Sbjct: 69 RPRPNTFIIRCLQWTTVIERTFH--VETPEEREEWTTAI 105
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain,
zizimin1, structural genomics, riken structural
genomics/proteomics initiative; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 150
Score = 57.3 bits (138), Expect = 2e-11
Identities = 15/109 (13%), Positives = 35/109 (32%), Gaps = 15/109 (13%)
Query: 36 DATSCRGYLNK------MAGRFHHWNKRWFVFDRTSRS----LAYYSDRSEKKQRGATYF 85
+ G+L K ++ + +R+F + Y ++ K+ +G+ +
Sbjct: 16 GGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFL 75
Query: 86 RCIEEVYVDHLNSVKSPSPHLTFVVKSSDRTFHLMAPSAEAMRIWIDVI 134
V + + ++ L A S M WI ++
Sbjct: 76 DSCMGVVQN-----NKVRRFAFELKMQDKSSYLLAADSEVEMEEWITIL 119
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, transferase; NMR {Homo sapiens}
Length = 164
Score = 56.7 bits (136), Expect = 4e-11
Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 13/104 (12%)
Query: 40 CRGYLNKMAGRFHH-----WNKRWFVFDRTSRSLAYY-SDRSEKKQRGA---TYFRCIEE 90
L K + + + +R FV T L YY +K ++G + +C+E
Sbjct: 17 LEEILIKRSQQKKKTSPLNYKERLFVL--TKSMLTYYEGRAEKKYRKGFIDVSKIKCVEI 74
Query: 91 VYVDHLNSVKSPSPHLTFVVKSSDRTFHLMAPSAEAMRIWIDVI 134
V D + V F V T ++ APS ++ +W+ +
Sbjct: 75 VKND--DGVIPCQNKYPFQVVHDANTLYIFAPSPQSRDLWVKKL 116
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Length = 134
Score = 53.9 bits (129), Expect = 2e-10
Identities = 19/119 (15%), Positives = 35/119 (29%), Gaps = 28/119 (23%)
Query: 41 RGYLN--KMAGRFHHWNKRWFVFDRTSRSLAYY---SDRSEKKQRGATYFRCIEEVYVDH 95
RG+L + F W++RW V ++Y+ D K G ++
Sbjct: 8 RGFLTIFEDVSGFGAWHRRWCVLSGN--CISYWTYPDDEKRKNPIGRINLANCTSRQIEP 65
Query: 96 LNSVKSPSPHLTFVVKSSD--------------------RTFHLMAPSAEAMRIWIDVI 134
N + TF + + L A + E +W+ +
Sbjct: 66 ANREFCARRN-TFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKL 123
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal
transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2
b.55.1.2 PDB: 1irs_A*
Length = 264
Score = 54.5 bits (130), Expect = 8e-10
Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 9/100 (9%)
Query: 40 CRGYLNKMAGRFHHWNKRWFVFDRTSRS-----LAYYSDRSEKKQRGATYFRCIEEVYVD 94
GYL K +KR+FV S + L YY + + + + + R I
Sbjct: 12 KVGYLRKP----KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCF 67
Query: 95 HLNSVKSPSPHLTFVVKSSDRTFHLMAPSAEAMRIWIDVI 134
++N + + D F + A S W +
Sbjct: 68 NINKRADSKNKHLVALYTRDEHFAIAADSEAEQDSWYQAL 107
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 107
Score = 51.4 bits (123), Expect = 1e-09
Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 14/102 (13%)
Query: 36 DATSCRGYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDH 95
YLN + W RW L +Y DR+ K + + +
Sbjct: 6 SGLETSSYLNVLVN--SQWKSRWCSVRDNH--LHFYQDRNRSKV-------AQQPLSLVG 54
Query: 96 LNSVKSPSPHLTFVVK---SSDRTFHLMAPSAEAMRIWIDVI 134
V PSP + + + L A S+E M W+ ++
Sbjct: 55 CEVVPDPSPDHLYSFRILHKGEELAKLEAKSSEEMGHWLGLL 96
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 137
Score = 51.9 bits (124), Expect = 2e-09
Identities = 19/111 (17%), Positives = 33/111 (29%), Gaps = 10/111 (9%)
Query: 36 DATSCRGYLNKMAGR---FHHWNKRWFVFDRTSRSLAYYSDRSEKKQ--RGATYFR-CIE 89
+ +L R + + W VF T+ L+YY + E + C
Sbjct: 7 GIPELKDHLRIFRPRKLTLKGYRQHWVVFKETT--LSYYKSQDEAPGDPIQQLNLKGC-- 62
Query: 90 EVYVDHLNSVKSPSPHLTFVVKSSDRTFHLMAPSAEAMRIWIDVIFSGAEG 140
EV D S + L +L + W+ ++G
Sbjct: 63 EVVPDVNVSGQKFCIKLLVPSPEGMSEIYLRCQDEQQYARWMAGCRLASKG 113
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 112
Score = 50.7 bits (121), Expect = 3e-09
Identities = 15/105 (14%), Positives = 35/105 (33%), Gaps = 5/105 (4%)
Query: 42 GYLNKMAGRFHHWNKRWFVFDRTSRS-LAYYSDRSEKKQRGATYFRCIEEVYVDHLNSVK 100
G L W++ W + L + + + D +
Sbjct: 12 GPLRLS-ESGETWSEVWAAIPMSDPQVLHLQGGSQDGRLPRTIPLPSCKLSVPDPEERLD 70
Query: 101 SPSPHLTFVVKSSDRTFHLMAPSAEAMRIWIDVIFSGAEGYQEFG 145
S + ++ + ++++L A SAE + W++ + + A G
Sbjct: 71 SG---HVWKLQWAKQSWYLSASSAELQQQWLETLSTAAHSGPSSG 112
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21,
myristate, transport, nucleotide-binding, rhogap
protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2dhj_A
Length = 168
Score = 51.3 bits (122), Expect = 5e-09
Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 3/98 (3%)
Query: 46 KMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNSVKSPSPH 105
++ G W + + V S L Y D+ E+ + ++ ++ +
Sbjct: 21 RVGGSIRPWKQMYVVLRGHS--LYLYKDKREQTTPSEEEQPISVNACLIDISYSETKRKN 78
Query: 106 LTFVVKSSDRTFHLMAPSAEAMRIWIDVIFSGAEGYQE 143
F + +SD A + M WI I + +E
Sbjct: 79 -VFRLTTSDCECLFQAEDRDDMLAWIKTIQESSNLNEE 115
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling
protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB:
3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Length = 120
Score = 50.0 bits (119), Expect = 6e-09
Identities = 20/106 (18%), Positives = 34/106 (32%), Gaps = 15/106 (14%)
Query: 42 GYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNSVKS 101
G+L + + ++K ++V T L + KK + E V + S
Sbjct: 10 GFLERRSKFLKSYSKGYYVL--TPNFLHEFKTADRKKDLVPVMSLALSECTVTEHSRKNS 67
Query: 102 PSP------HLTFVVK-------SSDRTFHLMAPSAEAMRIWIDVI 134
S FV+ + A S E+M W D +
Sbjct: 68 TSSPNSTGSDAKFVLHAKQNGIIRRGHNWVFKADSYESMMSWFDNL 113
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK
repeat, cytoplasm, GTP-binding, GTPase activation,
metal-binding, nucleotide-binding; NMR {Homo sapiens}
Length = 128
Score = 49.1 bits (116), Expect = 1e-08
Identities = 16/113 (14%), Positives = 29/113 (25%), Gaps = 21/113 (18%)
Query: 42 GYLNKMAGR--FHHWNKRWFVFDRTSRSLAYYSDRSEKKQ------------------RG 81
+L K +G W K++ L Y+ ++ +
Sbjct: 8 SFLLKRSGNSLNKEWKKKYVTLSSNG-FLLYHPSINDYIHSTHGKEMDLLRTTVKVPGKR 66
Query: 82 ATYFRCIEEVYVDHLNSVKSPSPHLTFVVKSSDRTFHLMAPSAEAMRIWIDVI 134
+V S+ +T+H A S E W+ I
Sbjct: 67 PPRAISAFGPSASGSAGQAEEENFEFLIVSSTGQTWHFEAASFEERDAWVQAI 119
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc
binding, X-linked agammaglobulinemia, tyrosine-protein
kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A*
2z0p_A* 1bwn_A*
Length = 169
Score = 48.0 bits (113), Expect = 7e-08
Identities = 20/123 (16%), Positives = 38/123 (30%), Gaps = 32/123 (26%)
Query: 42 GYLNKMAG-----RFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGA-------TYFRCIE 89
K + ++ K F+ T L+YY E+ +RG+ C+E
Sbjct: 7 SIFLKRSQQKKKTSPLNFKKCLFLL--TVHKLSYYEYDFERGRRGSKKGSIDVEKITCVE 64
Query: 90 EVYVDHLNSVKSPSPHLT------------------FVVKSSDRTFHLMAPSAEAMRIWI 131
V + + P F V + ++ +P+ E + WI
Sbjct: 65 TVVPEKNPPPERQIPRRGEESSEMEQISIIERFPYPFQVVYDEGPLYVFSPTEELRKRWI 124
Query: 132 DVI 134
+
Sbjct: 125 HQL 127
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport,
pleckstrin homology domain, phosphatidylinositol
binding, structural genomics; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 130
Score = 46.6 bits (110), Expect = 1e-07
Identities = 19/112 (16%), Positives = 33/112 (29%), Gaps = 21/112 (18%)
Query: 41 RGYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGA----------------TY 84
+L K+ G W K W V L Y + + G +
Sbjct: 11 ADWL-KIRGTLKSWTKLWCVL--KPGVLLIYKTQKNGQWVGTVLLNACEIIERPSKKDGF 67
Query: 85 FRCIEEVYVDHLNSVKSPSPHLTFVVKSSDRTFHLM--APSAEAMRIWIDVI 134
+ + +VK P + + +L+ A S R W+D +
Sbjct: 68 CFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDAL 119
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A
Length = 125
Score = 45.4 bits (107), Expect = 4e-07
Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 10/99 (10%)
Query: 40 CRGYLNKMAGRF--HHWNKRWFVFDRTSRSLAYYSDRSEKKQRG-----ATYFRCIEEVY 92
+G+L + WFV T+ +L++Y D EK+++ R +E+ +
Sbjct: 14 RKGWLTINNIGIMKGGSKEYWFVL--TAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGF 71
Query: 93 VDHLNSVKSPSPHLTFVVKSSDRTFHLMAPSAEAMRIWI 131
+ + + V K R L + E + W
Sbjct: 72 MSSKHIFALFNTEQRNVYKDY-RQLELACETQEEVDSWK 109
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex,
pleckstrin homology domain, ligand binding protein; HET:
I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Length = 129
Score = 44.1 bits (104), Expect = 1e-06
Identities = 22/106 (20%), Positives = 34/106 (32%), Gaps = 15/106 (14%)
Query: 42 GYLNKM----AGRF--HHWNKRWFVFDRTSRSLAYYSDRSE-KKQRGATYFRCIEEVYVD 94
G LN GR +W W V T SL +Y + G E VD
Sbjct: 16 GLLNMTKIAQGGRKLRKNWGPSWVVL--TGNSLVFYREPPPTAPSSGWGPAGSRPESSVD 73
Query: 95 HLNSVKSPSPHLT-----FVVKSSDRT-FHLMAPSAEAMRIWIDVI 134
+ + HL+ +++ F L + +R W +
Sbjct: 74 LRGAALAHGRHLSSRRNVLHIRTIPGHEFLLQSDHETELRAWHRAL 119
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH,
RAS-associating, pleckstrin-homology, adapter
phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Length = 256
Score = 45.2 bits (106), Expect = 1e-06
Identities = 20/144 (13%), Positives = 41/144 (28%), Gaps = 13/144 (9%)
Query: 9 FRGDSLDLRQHIEAAGHQLEACSHLTLDATSCRGYLNKMAGRFHHWNKRWFVFDRTSRSL 68
F + Q + QL + + +G+L+ W K + R+ L
Sbjct: 103 FPEQMVTWSQQSNGSQTQLLQNFLNSSSSPEIQGFLHVKELGKKSWKKLYVCLRRS--GL 160
Query: 69 AYYSDRSEKKQRGATYFRCIEEVYVDHLNS----VKSPSPHLTFVVKS------SDRTFH 118
+ + R +E+ + L + +P+ H +K +
Sbjct: 161 YCSTKGTSAAPRHLQLLADLEDSNIFSLIAGRKQYNAPTDH-GLCIKPNKVRNETKELRL 219
Query: 119 LMAPSAEAMRIWIDVIFSGAEGYQ 142
L A + W+ G
Sbjct: 220 LCAEDEQTRTSWMTAFRLLKYGML 243
>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase,
PKB, pleckstrin homology domain, inositol phosphate,
signal transduction; HET: 4PT; 1.45A {Homo sapiens}
SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A
Length = 151
Score = 43.7 bits (102), Expect = 3e-06
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 14/93 (15%)
Query: 42 GYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNSVKS 101
G ++K G F +R + T YY D K +G E+ ++
Sbjct: 56 GPVDKRKGLF--ARRRQLL--LTEGPHLYYVDPVNKVLKG--------EIPWSQELRPEA 103
Query: 102 PSPHLTFVVKSSDRTFHLMAPSAEAMRIWIDVI 134
+ TF V + +RT++LM PS A + W I
Sbjct: 104 KNFK-TFFVHTPNRTYYLMDPSGNAHK-WCRKI 134
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain,
BAR-PH domain, protein transpo; 2.05A {Homo sapiens}
PDB: 2z0o_A 2elb_A
Length = 385
Score = 44.2 bits (103), Expect = 3e-06
Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 11/92 (11%)
Query: 45 NKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNSVKSPSP 104
NK W+++++ +L + C V ++
Sbjct: 288 NKTGLVSSTWDRQFYFTQ--GGNLMSQARGDVAGGLAMDIDNCS----VMAVDCEDRR-- 339
Query: 105 HLTFVVKSSD--RTFHLMAPSAEAMRIWIDVI 134
F + S D ++ L A S + WI I
Sbjct: 340 -YCFQITSFDGKKSSILQAESKKDHEEWICTI 370
>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 127
Score = 42.4 bits (99), Expect = 4e-06
Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 12/109 (11%)
Query: 36 DATSCRGYLNKMAGRFHH--WNKRWFVFDRTSRS----LAYYSDRSEKKQRGATYFRCI- 88
D +G+L + W + S L + EK +R + I
Sbjct: 10 DGAVKQGFLYLQQQQTFGKKWRRFGASLYGGSDCALARLELQ-EGPEKPRRCEAARKVIR 68
Query: 89 --EEVYVDHLNSVKSPSPHLT-FVVKSSDRTFHLMAPSAEAMRIWIDVI 134
+ + V S + F +++ +R + L AP+AE W+ I
Sbjct: 69 LSDCLRVAEAGGEASSPRDTSAFFLETKERLYLLAAPAAE-RGDWVQAI 116
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator,
pleckstrin homology domain, STR genomics consortium,
SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Length = 124
Score = 42.2 bits (99), Expect = 5e-06
Identities = 17/109 (15%), Positives = 32/109 (29%), Gaps = 18/109 (16%)
Query: 42 GYLNKMA-------GRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIE--EVY 92
G L++ R HW+ W V L ++ D G E
Sbjct: 12 GVLHRTKTADKGKRLRKKHWSASWTVL--EGGVLTFFKDSKTSAAGGLRQPSKFSTPEYT 69
Query: 93 VDHLN-SVKSPSPHLT-----FVVKSSDRT-FHLMAPSAEAMRIWIDVI 134
V+ ++ + ++S D + + + S + W I
Sbjct: 70 VELRGATLSWAPKDKSSRKNVLELRSRDGSEYLIQHDSEAIISTWHKAI 118
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP:
b.55.1.1
Length = 122
Score = 42.3 bits (99), Expect = 5e-06
Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 10/93 (10%)
Query: 53 HWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNSVKSPSPHLT----- 107
W+K + +++Y D+ K FR E D N+ + T
Sbjct: 31 SWDKVYMAAKAGR--ISFYKDQKGYKSNPELTFR--GEPSYDLQNAAIEIASDYTKKKHV 86
Query: 108 FVVKSSD-RTFHLMAPSAEAMRIWIDVIFSGAE 139
VK ++ F L A M W+ + + ++
Sbjct: 87 LRVKLANGALFLLQAHDDTEMSQWVTSLKAQSD 119
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine
nucleotide exchange factor, alternative splicing, cell
projection, coiled coil; 2.10A {Mus musculus} PDB:
3a8q_A
Length = 263
Score = 41.5 bits (96), Expect = 3e-05
Identities = 14/96 (14%), Positives = 27/96 (28%), Gaps = 8/96 (8%)
Query: 52 HHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNSVKSPS----PHLT 107
W + W + L +Y + + RC ++ + P H+
Sbjct: 37 RKWKQYWVTLKGCT--LLFYETYGKNSTEQNSAPRCA--LFAEDSIVQSVPEHPKKEHVF 92
Query: 108 FVVKSSDRTFHLMAPSAEAMRIWIDVIFSGAEGYQE 143
+ S + A S + W+ I S
Sbjct: 93 CLSNSCGDVYLFQATSQTDLENWVTAIHSACASLFA 128
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein
binding, structural genomics, NPPSFA; 1.70A {Mus
musculus}
Length = 126
Score = 40.0 bits (93), Expect = 4e-05
Identities = 13/116 (11%), Positives = 29/116 (25%), Gaps = 14/116 (12%)
Query: 39 SCRGYLNKMA-------GRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEV 91
+ G L + W + W V + +L YY +S + Y +
Sbjct: 2 TMEGPLRRKTLLKEGRKPALSSWTRYWVVL--SGATLLYYGAKSLRGTDRKHYKSTPGKK 59
Query: 92 Y-VDHLNSVKSPSPHLTFVVK----SSDRTFHLMAPSAEAMRIWIDVIFSGAEGYQ 142
+ P + + + S +W + + +
Sbjct: 60 VSIVGWMVQLPDDPEHPDIFQLNNPDKGNVYKFQTGSRFHAILWHKHLDDACKSSR 115
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition,
allosteric inhibitor, kinase inhibitor hydrophobic
collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB:
3o96_A*
Length = 446
Score = 40.1 bits (94), Expect = 9e-05
Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 13/109 (11%)
Query: 42 GYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNSVKS 101
G+L+K W R+F+ + + Y +R + + V +K+
Sbjct: 10 GWLHKRGEYIKTWRPRYFLL-KNDGTFIGYKERPQDVDQREAPLNNFS---VAQCQLMKT 65
Query: 102 PSPHL-TFVVK------SSDRTFHLMAPSAEAMRIWIDVIFSGAEGYQE 143
P TF+++ +RTFH + E W I + A+G ++
Sbjct: 66 ERPRPNTFIIRCLQWTTVIERTFH--VETPEEREEWTTAIQTVADGLKK 112
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural
genomics, spectrin beta chain, brain 2, KIAA0302; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 123
Score = 38.8 bits (90), Expect = 9e-05
Identities = 18/99 (18%), Positives = 28/99 (28%), Gaps = 12/99 (12%)
Query: 53 HWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNSVKSPSPHLT----- 107
W + V R S L +Y D EV V + S +
Sbjct: 31 SWQNVYCVLRRGS--LGFYKDAKAASAGVP----YHGEVPVSLARAQGSVAFDYRKRKHV 84
Query: 108 FVVKSSD-RTFHLMAPSAEAMRIWIDVIFSGAEGYQEFG 145
F + D + + A M W+ V+ + G
Sbjct: 85 FKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAIASGPSSG 123
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1;
guanine nucleotide exchange factor, guanine-nucleotide
releasing factor, lipoprotein; 4.50A {Mus musculus}
Length = 279
Score = 39.9 bits (92), Expect = 1e-04
Identities = 16/105 (15%), Positives = 27/105 (25%), Gaps = 8/105 (7%)
Query: 46 KMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNSVKSPSPH 105
+ W W + L +Y + + V+V++ P
Sbjct: 31 VESATRRKWKHYWVSLKGCT--LFFYETDGRSGIDHNSVPKHA--VWVENSIVQAVPEHP 86
Query: 106 L---TFVVKSSD-RTFHLMAPSAEAMRIWIDVIFSGAEGYQEFGH 146
F + +S F S + WI I S H
Sbjct: 87 KKDFVFCLSNSLGDAFLFQTTSQTELENWITAIHSACAAAVARHH 131
>3ml4_A Protein DOK-7; tyrosine phosphorylation, adapter protein,
dimerization, SIG protein; HET: PTR; 2.60A {Mus
musculus}
Length = 224
Score = 38.3 bits (88), Expect = 3e-04
Identities = 21/114 (18%), Positives = 33/114 (28%), Gaps = 7/114 (6%)
Query: 36 DATSCRGYLNKMAGRFHHWNKRWFVFDRTS-----RSLAYYSDRSEKKQRGATYFRCIEE 90
+A G + G+ W RW V + S + Y D+ E+ + E
Sbjct: 7 EAALVEGQVKLRDGK--KWKSRWLVLRKPSPVADCLLMLVYKDKCERSKGLRERSSLTLE 64
Query: 91 VYVDHLNSVKSPSPHLTFVVKSSDRTFHLMAPSAEAMRIWIDVIFSGAEGYQEF 144
++ T + + L S EAM W I F
Sbjct: 65 DICGLEPALPYEGLAHTLAIICLSQAVMLGFDSHEAMCAWDTRIRYALGEVHRF 118
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus
musculus} SCOP: b.55.1.1 PDB: 1mph_A
Length = 106
Score = 35.7 bits (82), Expect = 0.001
Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 12/88 (13%)
Query: 53 HWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNSVKSPSPHLT----- 107
W+ + V + + +Y D + EV V ++ +
Sbjct: 22 SWHNVYCVINNQE--MGFYKDAKSAASGIPYHS----EVPVSLKEAICEVALDYKKKKHV 75
Query: 108 FVVKSSD-RTFHLMAPSAEAMRIWIDVI 134
F ++ SD + A E M WI I
Sbjct: 76 FKLRLSDGNEYLFQAKDDEEMNTWIQAI 103
>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin
activation, cytoplas membrane, cell adhesion; HET: SRT;
1.90A {Homo sapiens} PDB: 2lko_A*
Length = 173
Score = 34.7 bits (79), Expect = 0.004
Identities = 21/132 (15%), Positives = 36/132 (27%), Gaps = 12/132 (9%)
Query: 15 DLRQHIEAAGHQLEACSHLTLDATSCRGYLNKMAGR---FHHWNKRWFVFDRTSRSLAYY 71
DL +E Y+ + + + W F T S++ Y
Sbjct: 26 DLEITLEGGKTSTILGD--ITSIPELADYIKVFKPKKLTLKGYKQYWCTFKDT--SISCY 81
Query: 72 SDRSEKKQ--RGATYFR-CIEEVYVDHLNSVKSPSPHLTFVVKSSDRTFHLMAPSAEAMR 128
+ E R C EV D S + + L V L + +
Sbjct: 82 KSKEESSGTPAHQMNLRGC--EVTPDVNISGQKFNIKLLIPVAEGMNEIWLRCDNEKQYA 139
Query: 129 IWIDVIFSGAEG 140
W+ ++G
Sbjct: 140 HWMAACRLASKG 151
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide,
pleckst homology domain, guanine-nucleotide releasing
factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus
musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Length = 347
Score = 33.8 bits (77), Expect = 0.011
Identities = 23/110 (20%), Positives = 39/110 (35%), Gaps = 18/110 (16%)
Query: 41 RGYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVD------ 94
G+L K+ GR W +RWF+ L Y+ ++K+ RG + V+
Sbjct: 216 EGWLLKLGGRVKTWKRRWFILTDNC--LYYFEYTTDKEPRGIIPLENLSIREVEDPRKPN 273
Query: 95 --HLNSVKSPSPHLTFVVKSSD--------RTFHLMAPSAEAMRIWIDVI 134
L + + +D + + APS E W+ I
Sbjct: 274 CFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSI 323
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC),
endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Length = 510
Score = 32.7 bits (74), Expect = 0.036
Identities = 9/43 (20%), Positives = 16/43 (37%)
Query: 101 SPSPHLTFVVKSSDRTFHLMAPSAEAMRIWIDVIFSGAEGYQE 143
S F + DR + L + W+ I + +E Y +
Sbjct: 324 PSSDEPVFHISHIDRVYTLRTDNINERTAWVQKIKAASEQYID 366
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil,
cytoplasm, membrane, metal-binding, nucleotide-binding,
phorbol-ester binding; NMR {Rattus norvegicus}
Length = 117
Score = 31.1 bits (70), Expect = 0.056
Identities = 15/97 (15%), Positives = 37/97 (38%), Gaps = 18/97 (18%)
Query: 52 HHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVDHLNSVKSP------SPH 105
W K++ + S+ + +Y +K+Q + ++ + H+ V +
Sbjct: 18 FGWVKKYVIVS--SKKILFYDSEQDKEQSNP--YMVLDIDKLFHVRPVTQTDVYRADAKE 73
Query: 106 LTFVVK--------SSDRTFHLMAPSAEAMRIWIDVI 134
+ + + SS + L+A S E + W+ +
Sbjct: 74 IPRIFQILYANEGISSAKNLLLLANSTEEQQKWVSRL 110
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin
homology domain, structural genomics; NMR {Mus musculus}
SCOP: b.55.1.1
Length = 132
Score = 31.1 bits (70), Expect = 0.071
Identities = 14/125 (11%), Positives = 39/125 (31%), Gaps = 19/125 (15%)
Query: 16 LRQHIEA-AGHQLEACSHLTLDATSCRGYLNKMAGRFHHWNKRWFV-FDRTSRSLAYYSD 73
L + I+A G ++ ++ + G +R+F+ F L S
Sbjct: 10 LSEPIQAWEGDDIKTLGNVI-----FMSQVVMQHGACEEKEERYFLLFSSV---LIMLSA 61
Query: 74 RSEKKQRGATYFRCIEEVYVDHLNSVKSP----SPHLTFVVKSSDRTFHLMAPSAEAMRI 129
F ++ + + + S + + S+ + + + +
Sbjct: 62 SPRMSG-----FMYQGKIPIAGMVVNRLDEIEGSDCMFEITGSTVERIVVHCNNNQDFQE 116
Query: 130 WIDVI 134
W++ +
Sbjct: 117 WMEQL 121
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2;
hydrolase, phospholipase C, phosphoinositides, RHO
gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens}
PDB: 2w2w_A* 2w2x_C* 2k2j_A
Length = 124
Score = 30.5 bits (68), Expect = 0.086
Identities = 13/104 (12%), Positives = 26/104 (25%), Gaps = 14/104 (13%)
Query: 41 RGYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIEEVYVD------ 94
+G L W + + +SD E+ + +D
Sbjct: 15 QGELYMWDSIDQKWTRHFCAIADAKL---SFSDDIEQTMEEDNPLGSLCRGILDLNTYNV 71
Query: 95 -HLNSVKSPSPHLTFVVKSS---DRTFHLMAPSAEAMRIWIDVI 134
K+ + F+++ D E + W I
Sbjct: 72 VKAPQGKNQKSFV-FILEPKQQGDPPVEFATDKVEELFEWFQSI 114
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural
genomics consortium, DH domain, SGC, L binding protein;
2.80A {Homo sapiens}
Length = 434
Score = 31.1 bits (70), Expect = 0.11
Identities = 7/61 (11%), Positives = 18/61 (29%)
Query: 75 SEKKQRGATYFRCIEEVYVDHLNSVKSPSPHLTFVVKSSDRTFHLMAPSAEAMRIWIDVI 134
+ ++ G + V ++ +++S+ L A S W +
Sbjct: 273 TYPQKDGKYRLKNTLAVANMKVSRPVMEKVPYALKIETSESCLMLSASSCAERDEWYGCL 332
Query: 135 F 135
Sbjct: 333 S 333
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.21
Identities = 7/21 (33%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 110 VKSSDRTFHLMAP-SAEAMRI 129
+K + L A SA A+ I
Sbjct: 22 LKKLQASLKLYADDSAPALAI 42
>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal
transduction protein, hydrolase; HET: I3P; 1.90A {Rattus
norvegicus} SCOP: b.55.1.1
Length = 131
Score = 28.7 bits (64), Expect = 0.37
Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 9/88 (10%)
Query: 54 WNKRWFVFDRTSRSLAYYSDRSEKKQRGATYF--RCIEEV----YVDHLNSVKSPSPH-- 105
W + F + + R + + F I+EV + L P
Sbjct: 27 WRRERFYKLQEDCKTIWQESRKVMRSPESQLFSIEDIQEVRMGHRTEGLEKFARDIPEDR 86
Query: 106 -LTFVVKSSDRTFHLMAPSAEAMRIWID 132
+ V K T L+APS + W+
Sbjct: 87 CFSIVFKDQRNTLDLIAPSPADAQHWVQ 114
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange
factor (GEF), small G-protein, signaling protein; 2.40A
{Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A
1kzg_A 1rj2_A
Length = 353
Score = 29.1 bits (65), Expect = 0.46
Identities = 7/38 (18%), Positives = 16/38 (42%)
Query: 97 NSVKSPSPHLTFVVKSSDRTFHLMAPSAEAMRIWIDVI 134
+VK + + + + + AP+ E W++ I
Sbjct: 283 ENVKGDTKKFEIWYNAREEVYIIQAPTPEIKAAWVNAI 320
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO,
GTPase, guanine-nucleotide releas factor,
phosphorylation, signaling protein; 1.70A {Homo sapiens}
SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Length = 311
Score = 29.0 bits (65), Expect = 0.50
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 111 KSSDRTFHLMAPSAEAMRIWIDVI 134
+SD L A S E + WI I
Sbjct: 280 PTSDNKIVLKASSIENKQDWIKHI 303
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain,
alternative splicing, cytoplasm, guanine- nucleotide
releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Length = 346
Score = 29.0 bits (65), Expect = 0.51
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 106 LTFVVKSSDRTFHLMAPSAEAMRIWIDVI 134
++F S +T L A + W++ I
Sbjct: 313 VSFKNGSQSQTHSLQANDTFNKQQWLNCI 341
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene
regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 1pms_A 1awe_A
Length = 354
Score = 28.8 bits (64), Expect = 0.58
Identities = 11/83 (13%), Positives = 26/83 (31%), Gaps = 10/83 (12%)
Query: 59 FVFDRTSRSLAYYSDRSEKKQRGATY---FRCIEEVYVDHLNSVKSPS----PHLTFVVK 111
F+FD + + + +R E+ ++ + H ++
Sbjct: 265 FLFDG---LMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDKDDTNEYKHAFEIIL 321
Query: 112 SSDRTFHLMAPSAEAMRIWIDVI 134
+ + A SAE W+ +
Sbjct: 322 KDENSVIFSAKSAEEKNNWMAAL 344
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 28.8 bits (64), Expect = 0.67
Identities = 16/102 (15%), Positives = 30/102 (29%), Gaps = 13/102 (12%)
Query: 42 GYLNKMAGRFHHWNKRW-FVFDRTSRSLAYYSDRSEKKQRGATYFRCI--EEVYVDHLNS 98
G L ++ +R F+FD L Y ++ Y + + + V L
Sbjct: 338 GELTRVTQPQAKSQQRMFFLFDHQ---LIYCKKDLLRRD-VLYYKGRLDMDGLEVVDLED 393
Query: 99 VKSPSPH------LTFVVKSSDRTFHLMAPSAEAMRIWIDVI 134
K H ++ + L E + W+
Sbjct: 394 GKDRDLHVSIKNAFRLHRGATGDSHLLCTRKPEQKQRWLKAF 435
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase,
GTP-binding protein,, signaling protein; HET: GNP; 2.00A
{Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
Length = 113
Score = 27.5 bits (61), Expect = 0.95
Identities = 6/36 (16%), Positives = 14/36 (38%)
Query: 108 FVVKSSDRTFHLMAPSAEAMRIWIDVIFSGAEGYQE 143
F + + A +A+ R W++V+ +
Sbjct: 76 FKLLMFPESRIFQAENAKIKREWLEVLEETKRALSD 111
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo
sapiens} PDB: 3odx_A
Length = 536
Score = 27.3 bits (60), Expect = 2.1
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 106 LTFVVKSSDRTFHLMAPSAEAMRIWIDVIFSGAEGYQEFGH 146
+ F + + L+A + + W +I A + H
Sbjct: 491 VLFTWDQEAQIYELVAQTVSERKNWCALITETAGSLKVPAH 531
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus
norvegicus} SCOP: a.87.1.1 b.55.1.1
Length = 402
Score = 27.1 bits (60), Expect = 2.3
Identities = 10/101 (9%), Positives = 27/101 (26%), Gaps = 11/101 (10%)
Query: 42 GYLNKMAGRFHHWNKRW-FVFDRTSRSLAYYSDRSEKKQ----RGATYFRC--IEEVYVD 94
G + + + +R F+FD + ++ +G + ++
Sbjct: 261 GEMAWIYQPYGRNQQRVFFLFDH---QMVLCKKDLIRRDILYYKGRIDMDKYEVIDIEDG 317
Query: 95 HLNSVKSPSPH-LTFVVKSSDRTFHLMAPSAEAMRIWIDVI 134
+ + K ++ A E W+
Sbjct: 318 RDDDFNVSMKNAFKLHNKETEEVHLFFAKKLEEKIRWLRAF 358
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small
molecular weight G-protein, complex, protein-protein
complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Length = 354
Score = 27.1 bits (60), Expect = 2.3
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 111 KSSDRTFHLMAPSAEAMRIWIDVI 134
+ + + L A + WI +
Sbjct: 290 EGGIQRYVLQAADPAISQAWIKHV 313
>1x4p_A Putative splicing factor, arginine/serine-rich 14; SURP domain,
SFRS14 protein, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: a.217.1.1
Length = 66
Score = 25.5 bits (55), Expect = 3.0
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 58 WFVFDRTSRSLAYYSDRSEKKQRGA 82
WF+ D S YY + + QR
Sbjct: 38 WFLSDENSLEYKYYKLKLAEMQRSG 62
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 26.9 bits (59), Expect = 3.3
Identities = 9/66 (13%), Positives = 21/66 (31%), Gaps = 10/66 (15%)
Query: 78 KQRGATY-FR--------CIEEVYVDHLNSVKSPSPHLTFVVKSSDRTFHLMAPSAEAMR 128
K+RG +Y + + + K S + + + L + E +
Sbjct: 438 KRRGDSYDLKDFVNLHSFQVRDD-SSGDRDNKKWSHMFLLIEDQGAQGYELFFKTRELKK 496
Query: 129 IWIDVI 134
W++
Sbjct: 497 KWMEQF 502
>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 129
Score = 25.8 bits (56), Expect = 3.7
Identities = 14/98 (14%), Positives = 35/98 (35%), Gaps = 15/98 (15%)
Query: 42 GYLNKMAGRFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYFRCIE-------EVYVD 94
G++ R + + ++ D S+ L + + S K Y++ I D
Sbjct: 12 GWMVHYTSRDNLRKRHYWRLD--SKCLTLFQNESGSK-----YYKEIPLSEILRISSPRD 64
Query: 95 HLNSVKSPSPHLTFVVKSSDRTFHLMAPSAEAMRIWID 132
N + +PH F + + + + + ++ +
Sbjct: 65 FTNISQGSNPHC-FEIITDTMVYFVGENNGDSSHNPVL 101
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo
sapiens} PDB: 3odo_A
Length = 377
Score = 26.4 bits (58), Expect = 3.8
Identities = 6/37 (16%), Positives = 14/37 (37%)
Query: 106 LTFVVKSSDRTFHLMAPSAEAMRIWIDVIFSGAEGYQ 142
+ F + + L+A + + W +I A +
Sbjct: 338 VLFTWDQEAQIYELVAQTVSERKNWCALITETAGSLK 374
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding,
metal-binding, phosphoprotein, exchange factor, RAC,
GTPase, membrane domain; 1.85A {Mus musculus} PDB:
3bji_A 1f5x_A
Length = 406
Score = 26.3 bits (58), Expect = 4.3
Identities = 3/24 (12%), Positives = 9/24 (37%)
Query: 111 KSSDRTFHLMAPSAEAMRIWIDVI 134
+ + L + E + W++
Sbjct: 307 DQGAQGYELFFKTRELKKKWMEQF 330
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH),
beta sandwich (PH), signaling protein; 2.13A {Homo
sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Length = 385
Score = 25.6 bits (56), Expect = 7.7
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 101 SPSPHLTFVVKSSD---RTFHLMAPSAEAMRIWIDVIFSGAEGYQE 143
+ FV+ SD + + L+A + +W D+I A +E
Sbjct: 328 ATDNKALFVISMSDNGAQIYELVAQTVSEKTVWQDLICRMAASVKE 373
>2gez_B L-asparaginase beta subunit; isoaspartyl aminopeptidase,
NTN-hydrolase, autoproteolysis, taspase, sodium
binding, hydrolase; 2.60A {Lupinus luteus}
Length = 133
Score = 25.0 bits (55), Expect = 7.9
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 37 ATSCRGYLNKMAGR 50
ATS G +NKM GR
Sbjct: 16 ATSTGGLVNKMVGR 29
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent,
transport, cell membrane, transmembrane, membrane
protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Length = 1052
Score = 25.6 bits (57), Expect = 9.1
Identities = 5/7 (71%), Positives = 7/7 (100%)
Query: 126 AMRIWID 132
+MRIW+D
Sbjct: 183 SMRIWLD 189
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein,
membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY
C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB:
2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A*
1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A*
3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Length = 1057
Score = 25.6 bits (57), Expect = 9.4
Identities = 5/7 (71%), Positives = 7/7 (100%)
Query: 126 AMRIWID 132
AMRIW++
Sbjct: 183 AMRIWMN 189
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA
complex, pdzrhogef, guanine nucleotide exchange F RHOA,
signaling protein; 2.84A {Homo sapiens}
Length = 418
Score = 25.3 bits (55), Expect = 9.6
Identities = 3/30 (10%), Positives = 12/30 (40%)
Query: 114 DRTFHLMAPSAEAMRIWIDVIFSGAEGYQE 143
+ + L+A ++ W++++
Sbjct: 383 PQIYELVALTSSDKNTWMELLEEAVRNAHH 412
>1q35_A Iron binding protein FBPA; metal binding protein; 1.20A {Mannheimia
haemolytica} SCOP: c.94.1.1 PDB: 1si0_A 1si1_A
Length = 320
Score = 25.1 bits (55), Expect = 9.9
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 50 RFHHWNKRWFVFDRTSRSLAYYSDRSEKKQRGATYF 85
+F N +WF +R + DR K G Y
Sbjct: 87 QFRDSNDQWFGLTTRARVIYTSKDRVGKLPAGFDYL 122
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo
sapiens}
Length = 185
Score = 25.0 bits (54), Expect = 10.0
Identities = 6/33 (18%), Positives = 9/33 (27%)
Query: 111 KSSDRTFHLMAPSAEAMRIWIDVIFSGAEGYQE 143
+ + A S E WI +I
Sbjct: 144 MTDPEMVEVHASSKEERNSWIQIIQDTINTLNR 176
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.136 0.433
Gapped
Lambda K H
0.267 0.0516 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,327,332
Number of extensions: 121930
Number of successful extensions: 501
Number of sequences better than 10.0: 1
Number of HSP's gapped: 425
Number of HSP's successfully gapped: 98
Length of query: 146
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 61
Effective length of database: 4,328,508
Effective search space: 264038988
Effective search space used: 264038988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.7 bits)