RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy17151
         (86 letters)



>gnl|CDD|233089 TIGR00680, kdpA, K+-transporting ATPase, KdpA.  Kdp is a high
           affinity ATP-driven K+ transport system in Escherichia
           coli. It is composed of three membrane-bound subunits,
           KdpA, KdpB and KdpC and one small peptide, KdpF. KdpA is
           the K+-transporting subunit of this complex. During
           assembly of the complex, KdpA and KdpC bind to each
           other. This interaction is thought to stabilize the
           complex [medline:9858692]. Data indicates that KdpC
           might connect the KdpA, the K+-transporting subunit, to
           KdpB, the ATP-hydrolyzing (energy providing) subunit
           [medline:9858692] [Transport and binding proteins,
           Cations and iron carrying compounds].
          Length = 563

 Score = 27.5 bits (61), Expect = 0.84
 Identities = 9/46 (19%), Positives = 17/46 (36%)

Query: 33  GANTKHPLPRIINIHDKLKISSMSQIPTPYHFTYRELKSDIRSSRA 78
             N+ HP     N  + ++  ++  IP    F +  +  D R    
Sbjct: 241 NINSAHPFENPTNFANFVETVAIMVIPAALCFAFGIMAGDRRQGWL 286


>gnl|CDD|216073 pfam00709, Adenylsucc_synt, Adenylosuccinate synthetase. 
          Length = 420

 Score = 25.6 bits (57), Expect = 4.2
 Identities = 7/20 (35%), Positives = 13/20 (65%)

Query: 44  INIHDKLKISSMSQIPTPYH 63
           +++ D+L IS  + +  PYH
Sbjct: 89  VDVLDRLFISDRAHLILPYH 108


>gnl|CDD|218986 pfam06317, Arena_RNA_pol, Arenavirus RNA polymerase.  This family
            consists of several Arenavirus RNA polymerase proteins
            (EC:2.7.7.48).
          Length = 2206

 Score = 25.0 bits (55), Expect = 6.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 3    LSNVVISEVQGQLRITVKKSRPLLGM 28
            L +++IS+  G  R+  +  RPL G 
Sbjct: 2176 LGDLMISDSSGSFRLKGRTCRPLFGD 2201


>gnl|CDD|132411 TIGR03368, cellulose_yhjU, cellulose synthase operon protein YhjU. 
           This protein was identified by the partial phylogenetic
           profiling algorithm (PMID:16930487) as part of the
           system for cellulose biosynthesis in bacteria, and in
           fact is found in cellulose biosynthesis gene regions.
           The protein was designated YhjU in Salmonella
           enteritidis, where disruption of its gene disrupts
           cellulose biosynthesis and biofilm formation
           (PMID:11929533) [Cell envelope, Biosynthesis and
           degradation of surface polysaccharides and
           lipopolysaccharides].
          Length = 518

 Score = 25.0 bits (55), Expect = 6.3
 Identities = 7/14 (50%), Positives = 12/14 (85%)

Query: 48  DKLKISSMSQIPTP 61
           DK++IS + +IP+P
Sbjct: 411 DKMQISGLREIPSP 424


>gnl|CDD|235970 PRK07217, PRK07217, replication factor A; Reviewed.
          Length = 311

 Score = 24.6 bits (54), Expect = 7.4
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 3   LSNVVISEVQGQLRITVKKS 22
           L NVV  E QG+  + + ++
Sbjct: 136 LKNVVTDEYQGRFSVKLNRT 155


>gnl|CDD|234904 PRK01117, PRK01117, adenylosuccinate synthetase; Provisional.
          Length = 430

 Score = 24.6 bits (55), Expect = 7.6
 Identities = 6/20 (30%), Positives = 14/20 (70%)

Query: 44  INIHDKLKISSMSQIPTPYH 63
           +++ ++L+IS  + +  PYH
Sbjct: 91  VDVRERLRISERAHLILPYH 110


>gnl|CDD|218038 pfam04350, PilO, Pilus assembly protein, PilO.  PilO proteins are
           involved in the assembly of pilin. However, the precise
           function of this family of proteins is not known.
          Length = 144

 Score = 24.4 bits (54), Expect = 7.9
 Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 6/33 (18%)

Query: 40  LPRIINIHDKLKISSMSQIPTPYHF-----TYR 67
           LPRI+ +HD   IS +    +         TYR
Sbjct: 110 LPRIVTLHD-FTISRVKDGSSTLSMSATAKTYR 141


>gnl|CDD|221160 pfam11658, DUF3260, Protein of unknown function (DUF3260).  Some
           members in this family of proteins are annotated as YhjU
           however this cannot be confirmed. Currently this family
           has no known function.
          Length = 516

 Score = 24.5 bits (54), Expect = 7.9
 Identities = 7/14 (50%), Positives = 12/14 (85%)

Query: 48  DKLKISSMSQIPTP 61
           DK++IS + +IP+P
Sbjct: 412 DKMQISGLREIPSP 425


>gnl|CDD|217216 pfam02753, Pili_assembly_C, Gram-negative pili assembly
          chaperone, C-terminal domain.  Ig-like beta-sandwich
          fold.
          Length = 66

 Score = 23.4 bits (51), Expect = 9.6
 Identities = 7/12 (58%), Positives = 8/12 (66%)

Query: 59 PTPYHFTYRELK 70
          PTPY+ T   LK
Sbjct: 6  PTPYYVTLASLK 17


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.314    0.130    0.354 

Gapped
Lambda     K      H
   0.267   0.0754    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,094,987
Number of extensions: 315838
Number of successful extensions: 177
Number of sequences better than 10.0: 1
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 16
Length of query: 86
Length of database: 10,937,602
Length adjustment: 54
Effective length of query: 32
Effective length of database: 8,542,486
Effective search space: 273359552
Effective search space used: 273359552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.1 bits)