RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17151
(86 letters)
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 36.2 bits (84), Expect = 1e-04
Identities = 20/32 (62%), Positives = 24/32 (75%)
Query: 17 ITVKKSRPLLGMAIEGGANTKHPLPRIINIHD 48
+ VKKS LG+AIEGGANT+ PLPRI+ I
Sbjct: 10 VRVKKSAATLGIAIEGGANTRQPLPRIVTIQR 41
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.10
Identities = 6/26 (23%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 8 ISEVQGQLRITVKKSRPLLGM--AIE 31
+ ++Q L++ S P L + +E
Sbjct: 22 LKKLQASLKLYADDSAPALAIKATME 47
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.2 bits (65), Expect = 0.12
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 5/43 (11%)
Query: 34 ANTKHPLPRIINIHDKLKISSMSQIPTPYHFTYRELKSDIRSS 76
A + PL ++ H L+ + +PT F +L+
Sbjct: 3 AYSTRPL--TLS-HGSLEHVLL--VPTASFFIASQLQEQFNKI 40
Score = 25.4 bits (55), Expect = 3.1
Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 19/69 (27%)
Query: 12 QG-------QLRITVKKSRPLLGMAIEGGANTKHPL-----------PRIINIHDKLKIS 53
QG +LR + L+G I+ A T L + +NI + L+
Sbjct: 163 QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 54 SMSQIPTPY 62
S + Y
Sbjct: 223 S-NTPDKDY 230
>1ks5_A Endoglucanase A; cellulase, jelly-roll, familly 12, glycosyl
hydrolase; 2.10A {Aspergillus niger} SCOP: b.29.1.11
PDB: 1ks4_A
Length = 223
Score = 26.5 bits (58), Expect = 0.91
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 31 EGGANTKHPLPRIINIHDKLKISSMSQIPTPYHFTY 66
GG T +K +S +S IPT +
Sbjct: 52 SGGEGTVKSYSNSGVTFNKKLVSDVSSIPTSVEWKQ 87
>3vl9_A Xyloglucan-specific endo-beta-1,4-glucanase A; hydrolase; HET:
BGC; 1.20A {Aspergillus aculeatus} PDB: 3vl8_A* 3vlb_B
Length = 229
Score = 26.1 bits (57), Expect = 1.5
Identities = 7/36 (19%), Positives = 17/36 (47%)
Query: 31 EGGANTKHPLPRIINIHDKLKISSMSQIPTPYHFTY 66
GG+++ +++ +S IPT + ++Y
Sbjct: 63 SGGSSSVKSYVNAALTFTPTQLNCISSIPTTWKWSY 98
>3pqs_A Transferrin-binding protein; lipoprotein, transferrin receptor,
iron acquisition, vaccine candidate, beta barrel,
outermembrane; 2.10A {Actinobacillus pleuropneumoniae}
Length = 521
Score = 26.1 bits (56), Expect = 1.8
Identities = 10/46 (21%), Positives = 15/46 (32%)
Query: 18 TVKKSRPLLGMAIEGGANTKHPLPRIINIHDKLKISSMSQIPTPYH 63
K P LG + N I+ D + S+S +P
Sbjct: 34 LDKLMEPALGYVTKIPVNIPSVRKTEISEIDTVTDESLSLVPNEDK 79
>3hid_A Adenylosuccinate synthetase; niaid structural genomics, virulence
associated factor, PURA, purine ribonucleotide
biosynthesis, cytoplasm; 1.60A {Yersinia pestis CO92}
PDB: 1kjx_A* 1kkb_A* 1kkf_A* 1ade_A 1adi_A 1cg0_A*
1ch8_A* 1cib_A* 1gim_A* 1gin_A* 1hon_A* 1hoo_A* 1hop_A*
1juy_A* 1ksz_A* 1nht_A* 1qf4_A* 1qf5_A* 1son_A* 1soo_A*
...
Length = 432
Score = 25.9 bits (58), Expect = 1.9
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 44 INIHDKLKISSMSQIPTPYH 63
+ + ++L +S + PYH
Sbjct: 92 VPVRERLLLSEACPLILPYH 111
>3ue9_A Adenylosuccinate synthetase; ssgcid, ligase, ADSS, BTH_I2245,
IMP-aspartate ligase, struc genomics; 1.95A
{Burkholderia thailandensis}
Length = 452
Score = 25.9 bits (58), Expect = 1.9
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 44 INIHDKLKISSMSQIPTPYH 63
+++ ++L IS + + PYH
Sbjct: 105 LSVRERLFISEATTLILPYH 124
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.2 bits (54), Expect = 3.6
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 5 NVVISEVQGQLRITVKKSRPLLGMAIEG--GA 34
NV + +LR + + RP + I+G G+
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGS 161
>1dj2_A Adenylosuccinate synthetase; GDP, ligase; HET: GDP; 2.90A
{Arabidopsis thaliana} SCOP: c.37.1.10 PDB: 1dj3_A*
Length = 443
Score = 24.4 bits (54), Expect = 5.2
Identities = 2/20 (10%), Positives = 10/20 (50%)
Query: 44 INIHDKLKISSMSQIPTPYH 63
++ ++ +S + + +H
Sbjct: 110 VSCKGRILVSDRAHLLFDFH 129
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 23.9 bits (52), Expect = 5.8
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 16 RITVKKSRPLLGMAIEGGANTKHPLPRIINI 46
+ + K LG +I + P +I I
Sbjct: 18 IVELVKDCKGLGFSILDYQDPLDPTRSVIVI 48
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 24.1 bits (52), Expect = 6.5
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 17 ITVKKSRPLLGMAIEGGANTKHPLPRII 44
I +K + +G+ + GG N +I
Sbjct: 22 IELKVEKKPMGVIVCGGKNNHVTTGCVI 49
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 23.4 bits (51), Expect = 8.5
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 17 ITVKKSRPLLGMAIEGGANTKHPL 40
+ ++K G +I GG K L
Sbjct: 15 VDMEKGAKGFGFSIRGGREYKMDL 38
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 23.6 bits (51), Expect = 9.5
Identities = 8/32 (25%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 13 GQLRITVKKSRPLLGMAIEGGANTKHPLPRII 44
+R+ K L +A+EGG ++ P+ +++
Sbjct: 17 KDVRLLRIKKEGSLDLALEGGVDS--PVGKVV 46
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.130 0.354
Gapped
Lambda K H
0.267 0.0558 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,196,368
Number of extensions: 57549
Number of successful extensions: 168
Number of sequences better than 10.0: 1
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 21
Length of query: 86
Length of database: 6,701,793
Length adjustment: 54
Effective length of query: 32
Effective length of database: 5,194,059
Effective search space: 166209888
Effective search space used: 166209888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.8 bits)