RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17151
         (86 letters)



>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 103

 Score = 31.4 bits (71), Expect = 0.003
 Identities = 20/32 (62%), Positives = 24/32 (75%)

Query: 17 ITVKKSRPLLGMAIEGGANTKHPLPRIINIHD 48
          + VKKS   LG+AIEGGANT+ PLPRI+ I  
Sbjct: 10 VRVKKSAATLGIAIEGGANTRQPLPRIVTIQR 41


>d1ks5a_ b.29.1.11 (A:) Family 12 endo-1,4-beta-glucanase
          (cellulase) catalytic domain {Aspergillus niger [TaxId:
          5061]}
          Length = 223

 Score = 27.9 bits (62), Expect = 0.13
 Identities = 9/36 (25%), Positives = 13/36 (36%)

Query: 31 EGGANTKHPLPRIINIHDKLKISSMSQIPTPYHFTY 66
           GG  T           +K  +S +S IPT   +  
Sbjct: 52 SGGEGTVKSYSNSGVTFNKKLVSDVSSIPTSVEWKQ 87


>d1oa2a_ b.29.1.11 (A:) Family 12 endo-1,4-beta-glucanase
          (cellulase) catalytic domain {Trichoderma reesei,
          Cel12A [TaxId: 51453]}
          Length = 218

 Score = 26.7 bits (59), Expect = 0.34
 Identities = 7/22 (31%), Positives = 13/22 (59%)

Query: 45 NIHDKLKISSMSQIPTPYHFTY 66
           I  K  ++S+S +PT   ++Y
Sbjct: 66 AIPQKRTVNSISSMPTTASWSY 87


>d1olra_ b.29.1.11 (A:) Family 12 endo-1,4-beta-glucanase
          (cellulase) catalytic domain {Humicola grisea [TaxId:
          5527]}
          Length = 224

 Score = 25.9 bits (57), Expect = 0.50
 Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 31 EGGANTKHPLPRI-INIHDKLKISSMSQIPTPYHFTY 66
          +G  +     P +   I    KIS ++ + T   +TY
Sbjct: 55 QGAPDNVKSYPYVGKQIQRGRKISDINSMRTSVSWTY 91


>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase
          inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 123

 Score = 24.5 bits (53), Expect = 1.4
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 9  SEVQGQ-LRITVKKSRPLLGMAIEGGANTKHPL 40
          S+++G  L  T+KKS    G  I GG      L
Sbjct: 14 SQLKGTFLSTTLKKSNMGFGFTIIGGDEPDEFL 46


>d2nlra_ b.29.1.11 (A:) Family 12 endo-1,4-beta-glucanase
          (cellulase) catalytic domain {Streptomyces lividans,
          CelB2 [TaxId: 1916]}
          Length = 222

 Score = 24.0 bits (52), Expect = 3.1
 Identities = 4/33 (12%), Positives = 12/33 (36%)

Query: 34 ANTKHPLPRIINIHDKLKISSMSQIPTPYHFTY 66
           N  H           +++ ++S  P+   + +
Sbjct: 61 FNGCHYTNCSPGTDLPVRLDTVSAAPSSISYGF 93


>d2j2za2 b.7.2.1 (A:125-217) PapD {Escherichia coli [TaxId: 562]}
          Length = 93

 Score = 23.3 bits (50), Expect = 3.7
 Identities = 6/14 (42%), Positives = 7/14 (50%)

Query: 59 PTPYHFTYRELKSD 72
          PTPY+ T   L   
Sbjct: 22 PTPYYVTVIGLGGS 35


>d1l4ia2 b.7.2.1 (A:121-205) SfaE {Escherichia coli [TaxId: 562]}
          Length = 85

 Score = 22.7 bits (49), Expect = 4.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)

Query: 59 PTPYHFTYRELKSD 72
          PTPY+ T  +LK+ 
Sbjct: 25 PTPYYLTVTDLKAG 38


>d2co7b2 b.7.2.1 (B:136-220) Periplasmic chaperone SafB
          {Salmonella typhimurium [TaxId: 90371]}
          Length = 85

 Score = 22.4 bits (48), Expect = 6.0
 Identities = 3/14 (21%), Positives = 6/14 (42%)

Query: 59 PTPYHFTYRELKSD 72
          PTP++     +   
Sbjct: 25 PTPFYMNLASVTVG 38


>d2d69a1 c.1.14.1 (A:134-424) Ribulose 1,5-bisphosphate
          carboxylase-oxygenase {Archaeon Pyrococcus horikoshii
          [TaxId: 53953]}
          Length = 291

 Score = 22.9 bits (49), Expect = 6.4
 Identities = 7/20 (35%), Positives = 7/20 (35%)

Query: 11 VQGQLRITVKKSRPLLGMAI 30
          VQG       K RPL     
Sbjct: 7  VQGIREFMGVKDRPLTATVP 26


>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane
          exocytosis protein 1, RIMS1 {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 108

 Score = 22.6 bits (48), Expect = 6.7
 Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 1/39 (2%)

Query: 7  VISEVQGQLRITV-KKSRPLLGMAIEGGANTKHPLPRII 44
          +I  V    R T+ K S  LLG+ + GG  T        
Sbjct: 12 LIGRVILNKRTTMPKDSGALLGLKVVGGKMTDLGRLGAF 50


>d1tvfa2 e.3.1.1 (A:15-315) Pencillin binding protein 4 (PbpD),
          N-terminal domain {Staphylococcus aureus [TaxId: 1280]}
          Length = 301

 Score = 22.9 bits (48), Expect = 7.9
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 45 NIHDKLKISSMSQIPTPY 62
          NI  K   +SM+++ T Y
Sbjct: 52 NIDTKWNPASMTKLMTMY 69


>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting
          protein {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 99

 Score = 22.2 bits (47), Expect = 9.1
 Identities = 8/26 (30%), Positives = 12/26 (46%)

Query: 19 VKKSRPLLGMAIEGGANTKHPLPRII 44
           KK    LG+ I   ++ K   P +I
Sbjct: 17 PKKHSVELGITISSPSSRKPGDPLVI 42


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.130    0.354 

Gapped
Lambda     K      H
   0.267   0.0664    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 287,754
Number of extensions: 10986
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 24
Length of query: 86
Length of database: 2,407,596
Length adjustment: 51
Effective length of query: 35
Effective length of database: 1,707,366
Effective search space: 59757810
Effective search space used: 59757810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.0 bits)