Query psy17158
Match_columns 686
No_of_seqs 267 out of 654
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 23:24:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17158.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17158hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01401 Peptidase_M2: Angiote 100.0 2E-157 5E-162 1326.9 34.6 473 195-686 15-493 (595)
2 KOG3690|consensus 100.0 3E-142 6E-147 1166.9 37.3 481 191-686 29-516 (646)
3 cd06461 M2_ACE Peptidase famil 100.0 6E-121 1E-125 1010.0 39.3 391 291-686 1-391 (477)
4 PF01401 Peptidase_M2: Angiote 100.0 9.1E-44 2E-48 403.2 10.3 120 1-215 471-590 (595)
5 KOG3690|consensus 100.0 2.2E-42 4.8E-47 380.5 13.2 127 1-216 494-620 (646)
6 cd06461 M2_ACE Peptidase famil 100.0 1.2E-33 2.7E-38 314.1 12.0 109 1-204 369-477 (477)
7 cd06258 Peptidase_M3_like The 100.0 1.4E-26 3.1E-31 248.5 25.2 277 359-683 1-293 (365)
8 cd06459 M3B_Oligoendopeptidase 99.9 2E-23 4.3E-28 227.2 29.4 312 320-681 30-357 (427)
9 TIGR02289 M3_not_pepF oligoend 99.9 6.3E-23 1.4E-27 232.7 32.9 326 273-658 97-446 (549)
10 COG1164 Oligoendopeptidase F [ 99.8 1.1E-15 2.3E-20 175.4 36.0 456 148-681 17-515 (598)
11 TIGR00181 pepF oligoendopeptid 99.7 7.1E-15 1.5E-19 168.2 38.8 431 173-679 34-511 (591)
12 TIGR02290 M3_fam_3 oligoendope 99.7 1.1E-13 2.3E-18 158.7 36.2 350 270-681 127-508 (587)
13 PF01432 Peptidase_M3: Peptida 99.5 1.5E-12 3.2E-17 144.7 23.0 303 333-664 1-371 (458)
14 cd06460 M32_Taq Peptidase fami 99.5 3.1E-12 6.7E-17 140.4 24.8 267 341-667 11-301 (396)
15 cd06455 M3A_TOP Peptidase M3 T 99.3 1.1E-10 2.4E-15 131.0 22.6 305 328-662 22-386 (472)
16 PRK10911 oligopeptidase A; Pro 99.3 6.2E-10 1.3E-14 130.2 28.7 364 269-665 124-591 (680)
17 PRK10280 dipeptidyl carboxypep 99.1 6.1E-09 1.3E-13 121.8 21.4 373 269-665 130-592 (681)
18 cd06457 M3A_MIP Peptidase M3 m 99.0 1E-07 2.2E-12 107.0 25.2 307 333-663 2-373 (458)
19 PF02074 Peptidase_M32: Carbox 98.9 8.2E-08 1.8E-12 108.5 20.1 317 269-667 61-400 (494)
20 cd06456 M3A_DCP_Oligopeptidase 98.8 6.4E-07 1.4E-11 99.8 20.8 288 359-680 3-347 (422)
21 COG2317 Zn-dependent carboxype 98.7 5.3E-05 1.2E-09 84.4 33.1 251 357-667 127-401 (497)
22 KOG2089|consensus 98.7 4.1E-06 9E-11 95.8 23.8 383 269-682 154-633 (718)
23 cd06258 Peptidase_M3_like The 98.4 1.5E-06 3.2E-11 94.1 10.0 86 4-193 277-365 (365)
24 COG0339 Dcp Zn-dependent oligo 98.3 1.6E-05 3.5E-10 91.9 16.5 314 324-665 221-595 (683)
25 KOG2090|consensus 97.9 0.00039 8.4E-09 79.4 17.6 371 281-678 172-625 (704)
26 cd06459 M3B_Oligoendopeptidase 90.0 0.96 2.1E-05 49.9 8.0 38 4-41 343-381 (427)
27 TIGR02289 M3_not_pepF oligoend 89.1 1.2 2.6E-05 51.6 8.3 50 153-202 498-547 (549)
28 cd06460 M32_Taq Peptidase fami 78.2 2.8 6E-05 47.2 4.7 125 52-194 254-392 (396)
29 cd06456 M3A_DCP_Oligopeptidase 69.9 6.2 0.00014 44.6 5.0 41 152-193 379-420 (422)
30 PF04450 BSP: Peptidase of pla 69.2 6.6 0.00014 40.4 4.5 47 539-593 94-141 (205)
31 PF13485 Peptidase_MA_2: Pepti 58.2 22 0.00048 31.5 5.4 49 529-582 11-61 (128)
32 PF10303 DUF2408: Protein of u 54.5 61 0.0013 31.3 7.9 101 269-375 17-124 (134)
33 cd06455 M3A_TOP Peptidase M3 T 52.9 17 0.00038 41.5 4.7 40 152-192 431-471 (472)
34 PF14247 DUF4344: Domain of un 51.4 16 0.00035 38.0 3.8 56 518-582 47-124 (220)
35 PF02074 Peptidase_M32: Carbox 40.2 43 0.00093 39.0 5.3 115 68-194 367-491 (494)
36 PF00413 Peptidase_M10: Matrix 39.0 18 0.0004 34.0 1.8 12 541-552 104-116 (154)
37 PRK10911 oligopeptidase A; Pro 37.9 43 0.00094 40.4 5.0 41 152-193 635-676 (680)
38 PF14891 Peptidase_M91: Effect 35.5 25 0.00055 34.8 2.2 19 540-558 102-120 (174)
39 PF10263 SprT-like: SprT-like 35.5 47 0.001 31.7 4.0 84 479-576 3-91 (157)
40 cd04279 ZnMc_MMP_like_1 Zinc-d 33.0 24 0.00052 33.8 1.6 13 540-552 102-115 (156)
41 PRK10280 dipeptidyl carboxypep 32.7 59 0.0013 39.3 5.0 40 152-192 636-676 (681)
42 cd00203 ZnMc Zinc-dependent me 31.0 86 0.0019 29.8 5.0 76 477-552 23-107 (167)
43 cd04268 ZnMc_MMP_like Zinc-dep 29.2 32 0.00068 32.9 1.7 13 540-552 93-105 (165)
44 PF01432 Peptidase_M3: Peptida 28.7 70 0.0015 36.1 4.6 40 153-193 416-456 (458)
45 PF13398 Peptidase_M50B: Pepti 28.4 33 0.00072 34.8 1.7 17 540-556 21-37 (200)
46 PF13582 Reprolysin_3: Metallo 28.4 32 0.00068 31.4 1.4 11 542-552 108-118 (124)
47 cd04278 ZnMc_MMP Zinc-dependen 28.4 26 0.00057 33.7 0.9 12 541-552 107-118 (157)
48 PF13574 Reprolysin_2: Metallo 27.9 36 0.00078 33.7 1.8 12 541-552 111-122 (173)
49 PHA03102 Small T antigen; Revi 27.1 55 0.0012 32.4 2.9 46 400-445 44-89 (153)
50 PF05687 DUF822: Plant protein 26.6 28 0.00061 34.2 0.8 18 117-134 41-61 (150)
51 smart00731 SprT SprT homologue 25.4 41 0.00088 32.4 1.6 46 528-579 41-91 (146)
52 cd04277 ZnMc_serralysin_like Z 24.6 42 0.0009 33.2 1.6 17 539-555 111-127 (186)
53 smart00235 ZnMc Zinc-dependent 23.8 57 0.0012 30.5 2.3 25 526-552 73-97 (140)
54 PF06114 DUF955: Domain of unk 23.4 51 0.0011 28.9 1.8 28 529-556 29-57 (122)
55 PF13688 Reprolysin_5: Metallo 22.4 52 0.0011 32.5 1.8 15 538-552 139-153 (196)
56 PF09748 Med10: Transcription 21.7 6.8E+02 0.015 23.9 9.1 54 286-343 28-81 (128)
57 PTZ00458 acyl CoA binding prot 21.0 93 0.002 28.2 2.9 45 320-373 39-83 (90)
58 PLN02791 Nudix hydrolase homol 21.0 1.3E+02 0.0028 37.0 5.0 55 542-599 586-647 (770)
59 cd04270 ZnMc_TACE_like Zinc-de 20.6 53 0.0011 34.4 1.5 10 543-552 169-178 (244)
60 PF07841 DM4_12: DM4/DM12 fami 20.6 86 0.0019 27.2 2.6 38 121-171 21-58 (82)
61 cd04267 ZnMc_ADAM_like Zinc-de 20.6 84 0.0018 31.0 2.9 15 538-552 130-144 (192)
62 PF09345 DUF1987: Domain of un 20.5 82 0.0018 29.0 2.5 20 190-209 24-43 (99)
63 PF02031 Peptidase_M7: Strepto 20.3 56 0.0012 31.6 1.4 25 528-552 62-88 (132)
64 PRK05457 heat shock protein Ht 20.1 1.4E+02 0.003 32.2 4.5 63 479-552 78-145 (284)
65 cd04271 ZnMc_ADAM_fungal Zinc- 20.1 35 0.00076 35.5 0.0 27 392-420 21-48 (228)
No 1
>PF01401 Peptidase_M2: Angiotensin-converting enzyme This Prosite motif covers only the active site.; InterPro: IPR001548 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M2 (clan MA(E)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. The catalytic residues and zinc ligands have been identified, the zinc ion being ligated to two His residues within the motif HEXXH, showing that the enzyme belongs to the E sub-group of metalloproteases []. Pepetidyl-dipeptidase A (angiotensin-converting enzyme) is a mammalian enzyme responsible for cleavage of dipeptides from the C-termini of proteins, notably converting angiotensin I to angiotensin II []. The enzyme exists in two differentially transcribed forms, the most common of which is from lung endothelium; this contains two homologous domains that have arisen by gene duplication []. The testis-specific form contains only the C-terminal domain, arising from a duplicated promoter region present in intron 12 of the gene []. Both enzymatic forms are membrane proteins that are anchored by means of a C-terminal transmembrane domain. Both domains of the endothelial enzyme are active, but have differing kinetic constants []. ]. A number of insect enzymes have been shown to be similar to peptidyl-dipeptidase A, these containing a single catalytic domain.; GO: 0008237 metallopeptidase activity, 0008241 peptidyl-dipeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 2YDM_A 3BKL_A 2C6N_B 1UZE_A 3BKK_A 2C6F_B 2IUX_A 2IUL_A 2XYD_B 3NXQ_B ....
Probab=100.00 E-value=2.3e-157 Score=1326.92 Aligned_cols=473 Identities=49% Similarity=0.909 Sum_probs=421.6
Q ss_pred HHHHHHHHHHhhhCCcccccCCCCCCccccccccccCCCCCCCCCCchhHHHHHHHhhhHHHHHHHHHhhhccc----hh
Q psy17158 195 PLYKWLKEENRKTGTFVGWEKGRNGNMWAQSWSNIYDITQPYPDKQEPDITKELQRQGYTVLKMFKKAEDFFLS----LN 270 (686)
Q Consensus 195 PL~~WL~~~N~k~~~~~GW~~~~~~~~~~A~W~y~Tnit~~n~~~~~~~~e~~~~~~~f~~~~~~~~a~~F~~~----~~ 270 (686)
=+.+||++.|.+....+.=. +.|+|+|+||||++|.+ ++++++++.++|. ++.+++|++|+++ ++
T Consensus 15 eA~~FL~~yn~ea~~v~~~~-------a~A~W~y~TNITdeN~~---~~~ea~~~~a~F~-k~~~~~AkkFd~~~~~d~~ 83 (595)
T PF01401_consen 15 EAKAFLEEYNREAEQVYYQS-------AEAQWNYNTNITDENQQ---LMAEASLEYAKFQ-KEYAKEAKKFDWTKFKDDT 83 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHTS-SHHHHH---HHHHHHHHHHHHH-HHHHHHHTTSHGGGGSSHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HhhhhHhhcCCChHHHH---HHHHHHHHHHHHH-HHHHHHHHhcCcccCCCHH
Confidence 36789999998877763332 58999999999999999 9999999999999 9999999999986 77
Q ss_pred HhhHHhhhcc-ccCCCChHhHHHHHHHHHHHHHhhhcceeccCCCCCCCCCCccCCChhhHHHHHhcCCCHHHHHHHHHH
Q psy17158 271 MSKMTTDFWE-NSVFVRPKDRDIYSSVLSDMQKLFATAKLCPYNASASNDTKCNLDFDPTVINIMATSRDPKELAYYWQE 349 (686)
Q Consensus 271 ~kRqL~~L~~-g~a~L~~e~~~el~~l~s~m~~iYstakvC~~~~~~~~~g~c~l~LepdL~~Ima~SrD~~eLk~aW~a 349 (686)
+||||++|+. |+++|++++++++++|+++|+++||++|||..+ ++| ++|+|||++||++|||++||+++|++
T Consensus 84 lkRql~~L~~lG~AaL~~~k~~el~~i~s~M~~iYst~kvC~~~------~~c-l~LePdl~~ima~Srd~~eL~~~W~~ 156 (595)
T PF01401_consen 84 LKRQLKKLSKLGPAALPPEKLEELNKILSEMESIYSTAKVCPYD------GKC-LSLEPDLEEIMATSRDYDELLYAWEG 156 (595)
T ss_dssp HHHHHHHHTS-GGGGSTHHHHHHHHHHHHHHHHHHHH-EEEESS------SEE-EETTTHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHHhccccccCCC------Ccc-ccchhhHHHHHhccCCHHHHHHHHHH
Confidence 9999999999 999999999999999999999999999999875 789 99999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHcCCCChHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcc
Q psy17158 350 FRNKTGKLMRKKYAKYVQILNEGVRLSHYKDAGDSWIALYNQPHFKETIEKLWTDIKPLYVELHAYVRRKLLAKYGPEVV 429 (686)
Q Consensus 350 Wr~~vg~~~r~~y~~~V~L~N~aAr~nGf~d~ge~Wr~~Ye~~~~~~~~e~lw~qIkPLY~qLHayVR~kL~~~YG~~~v 429 (686)
||+++|++||+.|.+||+|.|+||+.|||+|+|+|||+.||+++|++++++||++|+|||+|||||||++|+++||+++|
T Consensus 157 Wr~~vg~~~r~~y~~~V~L~N~aA~~nG~~d~g~~Wr~~ye~~~~~~~~~~lw~~i~PLY~~LHayVR~~L~~~Yg~~~v 236 (595)
T PF01401_consen 157 WRDAVGPPMRPLYERYVELSNEAARLNGFKDTGEYWRSSYEMPNFEQELERLWQQIKPLYKQLHAYVRRKLREKYGDDVV 236 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSHHHHHHGGG-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccccccccccccccccccccCCCCCCCChhHHHHHccCcHHHHHHHHHHHHHhcCCCCCChHHHhccccccC
Q psy17158 430 FEKEPIPAHLLGNMWAQSWSNIYDITQPYPDIQEPDITKELQRQNYTVLKMFKKAEDFFLSLNMSKMTTDFWENSVFVRP 509 (686)
Q Consensus 430 ~~~gpIPAHLLGnmwaq~W~niyd~~~P~P~~~~~Dvt~~l~~q~yt~~~Mfk~Ae~FF~SLGL~~mp~~FW~~Sm~~kp 509 (686)
+.+||||||||||||||+|+|||+++.|||+.+.+|||++|++||||+++||++||+||+||||++||++||++|||+||
T Consensus 237 ~~~gpIPAHLLGnmwaq~W~ni~~~~~P~p~~~~~dvt~~l~~q~~t~~~mf~~ae~ff~SlGl~~mp~~FW~~S~~~kp 316 (595)
T PF01401_consen 237 PPDGPIPAHLLGNMWAQSWSNIYDLVLPYPDKPSLDVTEELVKQGYTAKKMFKTAEEFFTSLGLPPMPPTFWEKSMFEKP 316 (595)
T ss_dssp -TTS-EEGGGSSSTTSS-GGGGHHHH-STTTS--S-THHHHHHTT--HHHHHHHHHHHHHHTTS----HHHHHHSB-S--
T ss_pred CCCCCccHHHHHHHHHHHHhhhhccccCCCCCCCCCcHHHHHHccccHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCcccccccccCCCCCceeEEecCcCCcchHHHHHHHHHHHHHHHHhcCCCCCCCCCCCchhHhHHHHHHHHhhcCh
Q psy17158 510 KD-RDIVCHGSAWDFHDGKTYRIKLCALVGEDDLTTIHHEMGHIEYDMMYSQQLPFYQTSPNPGFHEAVGDTIVLSVKTH 588 (686)
Q Consensus 510 ~d-r~v~ChasAwDf~~~~D~RIkmCt~vt~~Df~tvHHEmGHi~Y~~~Y~~qP~~fR~gANpgFhEAIgd~iaLSv~TP 588 (686)
.| |+|+|||||||||+++||||||||++|++||.|+||||||||||++|++||++||+||||||||||||+|+|||+||
T Consensus 317 ~d~r~~~Chasawdf~~~~d~Rik~Ct~v~~~df~t~hhemghi~Y~~~y~~qp~~fr~gan~gfhEAigd~ials~~tp 396 (595)
T PF01401_consen 317 TDGRDVVCHASAWDFYNGDDFRIKMCTEVTMEDFLTAHHEMGHIQYYMQYKDQPVLFREGANPGFHEAIGDTIALSVSTP 396 (595)
T ss_dssp SSSS----S-EEEEESSSSEEEEE----SSHHHHHHHHHHHHHHHHHHHTTTS-GGGSS-SSHHHHHHHHHHHHHHHTSH
T ss_pred CCCCCCCcCcchhhccCCCccceeecccCCHHHHHHHHHHHHHHHHHHHHhhCChhhhcCCCchHHHHHHHHHHHHcCCH
Confidence 98 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhCCCCCCCCCChhhhHHHHHHHhhhhhccCchhhhhhhhhHhhcCCCCChhhHHHHHHHHHHHhCcccCCCCCCC
Q psy17158 589 KHLKRIGLLKEDFKDDPESTINELFKFGLERLTFPPFGYLTDLWRWSVFNGSIPEDQYETAWWKLREEYQGVQPPMPRSE 668 (686)
Q Consensus 589 ~hL~~iGLl~~~~~~~~e~~IN~Ll~~AL~kI~fLPf~~~~D~WRw~VF~g~i~~~~~N~~WW~Lr~kYQGI~pPv~R~e 668 (686)
+||+++|||++. .++.+.+||+||++||+||+||||||++|+|||+||+|+|++++||++||+||++||||+|||+|+|
T Consensus 397 ~hL~~~gLl~~~-~~~~~~~in~L~~~AL~ki~~lPf~~~~d~wRw~vf~g~i~~~~~n~~wW~lr~~yqGi~pP~~r~~ 475 (595)
T PF01401_consen 397 KHLKRIGLLDNV-TDDEESDINFLLKQALDKIAFLPFGYLMDKWRWDVFSGSIPPDQYNEAWWELREKYQGIVPPVERSE 475 (595)
T ss_dssp HHHHHTTSSSTT-TTSHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTSS-CCGHHHHHHHHHHHHHSEE-SS-EET
T ss_pred HHHHHcCCCCCC-CcchHHHHHHHHHHhhhHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccCCCCCCc
Confidence 999999999987 7788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccCcccccCCCCCC
Q psy17158 669 DDFDPGSKYHIPNNVEYL 686 (686)
Q Consensus 669 ~dFDpgAKyHI~~n~pYi 686 (686)
+||||||||||++|+|||
T Consensus 476 ~~fD~~ak~hi~~~~py~ 493 (595)
T PF01401_consen 476 SDFDPGAKYHIPANTPYI 493 (595)
T ss_dssp TS-GGGGSHHHHTT--SH
T ss_pred ccCCcchhhhhccccccH
Confidence 999999999999999996
No 2
>KOG3690|consensus
Probab=100.00 E-value=2.8e-142 Score=1166.91 Aligned_cols=481 Identities=42% Similarity=0.814 Sum_probs=462.5
Q ss_pred HhhhHHHHHHHHHHhhhCCcccccCCCCCCccccccccccCCCCCCCCCCchhHHHHHHHhhhHHHHHHHHHhhhccc--
Q psy17158 191 QYFDPLYKWLKEENRKTGTFVGWEKGRNGNMWAQSWSNIYDITQPYPDKQEPDITKELQRQGYTVLKMFKKAEDFFLS-- 268 (686)
Q Consensus 191 ~Yf~PL~~WL~~~N~k~~~~~GW~~~~~~~~~~A~W~y~Tnit~~n~~~~~~~~e~~~~~~~f~~~~~~~~a~~F~~~-- 268 (686)
.+..-++.||+++|.+.... |... .+|+|+|+||+|+++.. .+.+++.++++|. +..+.++++|+..
T Consensus 29 ~~e~~~~~fL~~~~~q~~~v--~~q~-----~la~~~y~~~~~~~~~~---a~~ea~~~~~~~~-r~~a~q~k~~~~~~l 97 (646)
T KOG3690|consen 29 TDEEEAKRFLERYNAQARVV--YRQE-----ALAGWNYNTNGTEENLL---ALLEAEDKLVEFV-RSLATQAKKFDVAEL 97 (646)
T ss_pred CHHHHHHHHHHHHHHHHHHH--HHHH-----HHHHHHHhcCCChHHHH---HHHHHHHHHHHHH-HHHHHHHhhccHhhc
Confidence 35667899999999876654 5432 48999999999999999 9999999999999 9999999999876
Q ss_pred --hhHhhHHhhhcc-ccCCCChHhHHHHHHHHHHHHHhhhcceeccCCCCCCCCCCccCCChhhHHHHHhcCCCHHHHHH
Q psy17158 269 --LNMSKMTTDFWE-NSVFVRPKDRDIYSSVLSDMQKLFATAKLCPYNASASNDTKCNLDFDPTVINIMATSRDPKELAY 345 (686)
Q Consensus 269 --~~~kRqL~~L~~-g~a~L~~e~~~el~~l~s~m~~iYstakvC~~~~~~~~~g~c~l~LepdL~~Ima~SrD~~eLk~ 345 (686)
+.+||||+++++ |.++|++++++++++++++|+.+|++++||.++ +|+.|+|.|+|+|.+||++|||++||.|
T Consensus 98 ~D~~~rRql~~~s~lg~saL~~~d~~~~~~ll~~m~~~y~~~~vC~y~----~p~~~~L~l~P~l~~i~~~Srd~~eL~~ 173 (646)
T KOG3690|consen 98 QDERLRRQLQKVSQLGMSALSPDDLKRYNQLLSSMSTNYNTATVCAYD----QPSACCLLLEPQLQSIMANSRDYDELQW 173 (646)
T ss_pred cCHHHHHHHHHHhhhccccCCHHHHHHHHHHHHHHHhhcCCceeeCCC----CCCCcceecCccHHHHHhccCCHHHHHH
Confidence 999999999999 999999999999999999999999999999998 7777779999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCChHHHHhhcCCcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17158 346 YWQEFRNKTGKLMRKKYAKYVQILNEGVRLSHYKDAGDSWIALYNQP-HFKETIEKLWTDIKPLYVELHAYVRRKLLAKY 424 (686)
Q Consensus 346 aW~aWr~~vg~~~r~~y~~~V~L~N~aAr~nGf~d~ge~Wr~~Ye~~-~~~~~~e~lw~qIkPLY~qLHayVR~kL~~~Y 424 (686)
+|++||+++|+.+|+.|.+||+|.|++|+.|||.|+|+|||+.||++ +|++++|++|++|+|||++||||||++|++.|
T Consensus 174 ~W~~wr~~~g~~~r~~y~~yv~L~~e~A~lNg~~~~gdyW~~~yE~~~~~~~~ld~i~~ei~PlY~~LHAYvRr~L~~~Y 253 (646)
T KOG3690|consen 174 YWVEWRRKIGKAMRQSYEEYVDLSNEAAQLNGYVNGGDYWRLAYETPGDFEQDLDAIFEEIRPLYRQLHAYVRRKLRGAY 253 (646)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999 79999999999999999999999999999999
Q ss_pred CCCccCCCCCcccccccccccccccccccccccCCCCCCCChhHHHHHccCcHHHHHHHHHHHHHhcCCCCCChHHHhcc
Q psy17158 425 GPEVVFEKEPIPAHLLGNMWAQSWSNIYDITQPYPDIQEPDITKELQRQNYTVLKMFKKAEDFFLSLNMSKMTTDFWENS 504 (686)
Q Consensus 425 G~~~v~~~gpIPAHLLGnmwaq~W~niyd~~~P~P~~~~~Dvt~~l~~q~yt~~~Mfk~Ae~FF~SLGL~~mp~~FW~~S 504 (686)
|++.|+++||||||||||||||+|+++|++++|||+.+.+|||.+|++||||+++||++|++||+||||++||++||++|
T Consensus 254 gp~~i~~~gpiPahLlgnm~gq~Ws~~y~~~~P~pe~~~~dvt~~m~~qg~~~qkmF~~a~efF~SlGl~~lp~sfw~~s 333 (646)
T KOG3690|consen 254 GPDGISRDGPIPAHLLGNMWGQDWSNHYDLTTPFPERPLIDVTMEMVKQGYTVQKMFKLAAEFFTSLGLPALPPSFWTNS 333 (646)
T ss_pred CcccCCCCCCcCHHHHhhhhccchHhhhhcccCCCCCCCCchHHHHHHccccHHHHHHHHHHHHHHcCCCcCChHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCC-cccccccccCCCCCceeEEecCcCCcchHHHHHHHHHHHHHHHHhcCCCCCCCCCCCchhHhHHHHHHHH
Q psy17158 505 VFVRPKDRD-IVCHGSAWDFHDGKTYRIKLCALVGEDDLTTIHHEMGHIEYDMMYSQQLPFYQTSPNPGFHEAVGDTIVL 583 (686)
Q Consensus 505 m~~kp~dr~-v~ChasAwDf~~~~D~RIkmCt~vt~~Df~tvHHEmGHi~Y~~~Y~~qP~~fR~gANpgFhEAIgd~iaL 583 (686)
|+++|.|++ ++|||||||||+++||||||||+++++||+++||||||||||++|++||++||+||||||||||||+|+|
T Consensus 334 ~~~~p~d~~~v~C~~sAwdf~~~~Dfrik~Ct~vd~~~f~~~Hhem~hiQY~l~y~~qP~llre~anPgFheAIgd~~al 413 (646)
T KOG3690|consen 334 ILTRPDDRDMVVCHASAWDFYAGPDFRIKYCTKVDEEDFEQAHHEMGHIQYYLQYKQQPFLLREGANPGFHEAIGDAFAL 413 (646)
T ss_pred HhcCCCCCCceeechhhhccccCCCceeeecCcCCHHHHHHHHHHHHHHHHHHHHHhccHHhhCCCCCcHHHHHHHHHHH
Confidence 999999955 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcChhHHHHhCCCCCCCCCChhhhHHHHHHHhhhhhccCchhhhhhhhhHhhcCCCCChhhHHHHHHHHHHHhCcccCC
Q psy17158 584 SVKTHKHLKRIGLLKEDFKDDPESTINELFKFGLERLTFPPFGYLTDLWRWSVFNGSIPEDQYETAWWKLREEYQGVQPP 663 (686)
Q Consensus 584 Sv~TP~hL~~iGLl~~~~~~~~e~~IN~Ll~~AL~kI~fLPf~~~~D~WRw~VF~g~i~~~~~N~~WW~Lr~kYQGI~pP 663 (686)
||+||+||+++|||.+....+.+.+||+||+|||+||+||||+|++|+|||+||+|+|+.++||++||+||.||+||+||
T Consensus 414 s~stPrhL~slgLL~~~~~~d~~~~IN~L~k~aL~~v~~LPf~y~~DkwR~~Vf~G~i~k~~~N~~~W~lr~ky~Gv~~P 493 (646)
T KOG3690|consen 414 SVSTPRHLHSLGLLSEDLDEDDEVRINRLFKMALDKVAFLPFTYALDKWRYEVFDGEIPKDQYNCAYWELRNKYEGVRPP 493 (646)
T ss_pred hcCCHHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhcCCCCcchhhHHHHHHHHHhcCcCCC
Confidence 99999999999999755233448899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccCcccccCCCCCC
Q psy17158 664 MPRSEDDFDPGSKYHIPNNVEYL 686 (686)
Q Consensus 664 v~R~e~dFDpgAKyHI~~n~pYi 686 (686)
++|+++||||+|||||.+++|||
T Consensus 494 ~~r~~~dfD~~akf~~~~d~~~~ 516 (646)
T KOG3690|consen 494 VPRTNKDFDPPAKFHIQVDVSYT 516 (646)
T ss_pred CcCccccCCchhhhccCcchHHH
Confidence 99999999999999999999986
No 3
>cd06461 M2_ACE Peptidase family M2 Angiotensin converting enzyme (ACE, EC 3.4.15.1) is a membrane-bound, zinc dependent dipeptidase that catalyzes the conversion of the decapeptide angiotensin I to the potent vasopressor ocatapeptide angiotensin II, by removing two C-terminal amino acids. There are two forms of the enzyme in humans, the ubiquitous somatic ACE and the sperm-specific germinal ACE, both encoded by the same gene through transcription from alternative promoters. Somatic ACE has two tandem active sites with distinct catalytic properties, whereas germinal ACE, the function of which is largely unknown, has just a single active site. Recently, an ACE homolog, ACE2, has been identified in humans that differs from ACE; it preferentially removes carboxy-terminal hydrophobic or basic amino acids and appears to be important in cardiac function. ACE homologs (also known as members of the M2 gluzincin family) have been found in a wide variety of species, including those that neither h
Probab=100.00 E-value=6.2e-121 Score=1009.96 Aligned_cols=391 Identities=52% Similarity=1.054 Sum_probs=380.4
Q ss_pred HHHHHHHHHHHHhhhcceeccCCCCCCCCCCccCCChhhHHHHHhcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy17158 291 DIYSSVLSDMQKLFATAKLCPYNASASNDTKCNLDFDPTVINIMATSRDPKELAYYWQEFRNKTGKLMRKKYAKYVQILN 370 (686)
Q Consensus 291 ~el~~l~s~m~~iYstakvC~~~~~~~~~g~c~l~LepdL~~Ima~SrD~~eLk~aW~aWr~~vg~~~r~~y~~~V~L~N 370 (686)
+++++|+++|++|||+++||.++ ++..|++.+.|||.+||++|+|+++|++||++||+++|++|+++|.+||+|+|
T Consensus 1 ~~~~~l~~~~~~iy~~~~v~~~~----~~~~~~~~~~~~l~~i~~~s~D~~~r~~aW~~w~~~~g~~~~~~y~~lV~lrn 76 (477)
T cd06461 1 EELNKLLSEMETIYSTAKVCPYD----DPGDCCLLLEPDLESIMAKSRDYDELLYAWEGWRDAVGPPMRPLYERYVELAN 76 (477)
T ss_pred ChHHHHHHHHHHHHhceeecCCC----CcccccccCHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 37899999999999999999976 44555588889999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCChHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCCcccccccccccccccc
Q psy17158 371 EGVRLSHYKDAGDSWIALYNQPHFKETIEKLWTDIKPLYVELHAYVRRKLLAKYGPEVVFEKEPIPAHLLGNMWAQSWSN 450 (686)
Q Consensus 371 ~aAr~nGf~d~ge~Wr~~Ye~~~~~~~~e~lw~qIkPLY~qLHayVR~kL~~~YG~~~v~~~gpIPAHLLGnmwaq~W~n 450 (686)
++|+.|||+|+++|||++||++++.+++++||++|+|||++||+|||++|...||.++++++||||||||||||+|+|+|
T Consensus 77 ~~A~~~Gf~n~~~~wR~~Ye~~d~~~~~e~i~~~v~Ply~~Lh~~~r~~L~~~y~~~~~d~~~~iPahl~gn~~~q~W~~ 156 (477)
T cd06461 77 EAAKLNGFVDAGEYWRSEYETPDFEQDVERLWEELKPLYLQLHAYVRRKLRKKYGDDVVNRDGPIPAHLLGNMWAQSWSN 156 (477)
T ss_pred HHHHHcCCCCHHHHhHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCccccccCcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999989999999999999999999999
Q ss_pred cccccccCCCCCCCChhHHHHHccCcHHHHHHHHHHHHHhcCCCCCChHHHhccccccCCCCCcccccccccCCCCCcee
Q psy17158 451 IYDITQPYPDIQEPDITKELQRQNYTVLKMFKKAEDFFLSLNMSKMTTDFWENSVFVRPKDRDIVCHGSAWDFHDGKTYR 530 (686)
Q Consensus 451 iyd~~~P~P~~~~~Dvt~~l~~q~yt~~~Mfk~Ae~FF~SLGL~~mp~~FW~~Sm~~kp~dr~v~ChasAwDf~~~~D~R 530 (686)
+|+++.|||+.+.+||+++|++|+||+++||+++++||+||||.+||++||++||++||+|++++||+|||||++.+|+|
T Consensus 157 ~~~~~~p~p~~~~~dv~~~l~~~~~t~~~mf~~~~~ff~smgL~dl~~~fw~~s~~~rp~k~~~~C~~sawd~~~~~d~r 236 (477)
T cd06461 157 IYDLVKPYPGKPLLDVTDAMVEQGYTAKRMFKEAEEFFTSLGLPPMPPSFWTKSMLEKPTDREVVCHASAWDFYNGKDFR 236 (477)
T ss_pred ccccccCCCCCCCCChHHHHHHcCCCHHHHHHHHHHHHHHCCCCcCChHHHhhccccCCCCCCCccCcccccCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCcCCcchHHHHHHHHHHHHHHHHhcCCCCCCCCCCCchhHhHHHHHHHHhhcChhHHHHhCCCCCCCCCChhhhHH
Q psy17158 531 IKLCALVGEDDLTTIHHEMGHIEYDMMYSQQLPFYQTSPNPGFHEAVGDTIVLSVKTHKHLKRIGLLKEDFKDDPESTIN 610 (686)
Q Consensus 531 IkmCt~vt~~Df~tvHHEmGHi~Y~~~Y~~qP~~fR~gANpgFhEAIgd~iaLSv~TP~hL~~iGLl~~~~~~~~e~~IN 610 (686)
||||+++|++||.|+|||||||+||++|++||++||.||||||||||||++|||++||+||.++||++.. ..+++.+||
T Consensus 237 I~~c~~~t~~D~~t~~HE~GH~~yy~~y~~~p~~~r~~anp~fheav~e~~smS~~tpe~L~~~~ll~~~-~~~~~~~i~ 315 (477)
T cd06461 237 IKMCTKVNMEDFVTVHHEMGHIQYYLQYKDQPVLFREGANPGFHEAVGDAIALSVSTPKHLHKIGLLDSE-VDDEEADIN 315 (477)
T ss_pred eeeCCCCCHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCCCChHHHHHHHHHHhcCCHHHHhhccccccc-CCCcHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999874 466778899
Q ss_pred HHHHHhhhhhccCchhhhhhhhhHhhcCCCCChhhHHHHHHHHHHHhCcccCCCCCCCCCCCccCcccccCCCCCC
Q psy17158 611 ELFKFGLERLTFPPFGYLTDLWRWSVFNGSIPEDQYETAWWKLREEYQGVQPPMPRSEDDFDPGSKYHIPNNVEYL 686 (686)
Q Consensus 611 ~Ll~~AL~kI~fLPf~~~~D~WRw~VF~g~i~~~~~N~~WW~Lr~kYQGI~pPv~R~e~dFDpgAKyHI~~n~pYi 686 (686)
+|+++||++|+|||||++||+|||.||+|++|++++|+.||+||++||||+||+.|+++|||+||||||+.++|||
T Consensus 316 ~l~~~al~~i~fLP~~~~vD~fr~~vy~~~~~~~e~n~~WweL~~~yqgv~pP~~r~~~~fd~gak~h~~~~~PYi 391 (477)
T cd06461 316 FLLKMALDKIAFLPFGYLLDKWRWDVFDGEIPKDDYNKAWWELREKYQGVVPPVPRSEEDFDPGAKYHVPANTPYI 391 (477)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCCCCCccccCccceeeccCCCcHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999997
No 4
>PF01401 Peptidase_M2: Angiotensin-converting enzyme This Prosite motif covers only the active site.; InterPro: IPR001548 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M2 (clan MA(E)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. The catalytic residues and zinc ligands have been identified, the zinc ion being ligated to two His residues within the motif HEXXH, showing that the enzyme belongs to the E sub-group of metalloproteases []. Pepetidyl-dipeptidase A (angiotensin-converting enzyme) is a mammalian enzyme responsible for cleavage of dipeptides from the C-termini of proteins, notably converting angiotensin I to angiotensin II []. The enzyme exists in two differentially transcribed forms, the most common of which is from lung endothelium; this contains two homologous domains that have arisen by gene duplication []. The testis-specific form contains only the C-terminal domain, arising from a duplicated promoter region present in intron 12 of the gene []. Both enzymatic forms are membrane proteins that are anchored by means of a C-terminal transmembrane domain. Both domains of the endothelial enzyme are active, but have differing kinetic constants []. ]. A number of insect enzymes have been shown to be similar to peptidyl-dipeptidase A, these containing a single catalytic domain.; GO: 0008237 metallopeptidase activity, 0008241 peptidyl-dipeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 2YDM_A 3BKL_A 2C6N_B 1UZE_A 3BKK_A 2C6F_B 2IUX_A 2IUL_A 2XYD_B 3NXQ_B ....
Probab=100.00 E-value=9.1e-44 Score=403.16 Aligned_cols=120 Identities=64% Similarity=1.205 Sum_probs=105.1
Q ss_pred CCCCCCCCCCCCccccCCCCchHHHHHHHHHHHhHHHHHHHHhCCCCCCCCCCCchhhhhcccchhhhhhhcCCchhhhh
Q psy17158 1 MPRSEDDFDPGSKYHIPNNVEYLRYFVSYISQFQFHKALCTEAGQFDPKNPLKTPLHQYYKDAGDSWIALYNQPHFKETI 80 (686)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (686)
++|+|+|||||||||||+|+||||||||+|+||||||+||.+||+
T Consensus 471 ~~r~~~~fD~~ak~hi~~~~py~ryfls~ilqFQ~~~~lC~~ag~----------------------------------- 515 (595)
T PF01401_consen 471 VERSESDFDPGAKYHIPANTPYIRYFLSTILQFQFYKALCEAAGH----------------------------------- 515 (595)
T ss_dssp S-EETTS-GGGGSHHHHTT--SHHHHHHHHHHHHHHHHHHHHTTT-----------------------------------
T ss_pred CCCCcccCCcchhhhhccccccHHHHHHHHHHHHHHHHHHHhcCC-----------------------------------
Confidence 589999999999999999999999999999999999999999999
Q ss_pred hhhhhccchhhhhhhHHHHHhhhhhcCCccccccCCcchhhHHHhhhhcccCCCCCCCCCCCCcccccCCCcHHHHHHHH
Q psy17158 81 EKLWTDIKPLYLELHAYVRRKLLAKYGPEVVFEKEPIPAHLLVHKALCTEAGQFDPKNPLKTPLHQCDIYGSKKAGNLFK 160 (686)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~c~~~~~~~~~~~~~~pLh~Cdiy~s~~aG~~l~ 160 (686)
+||||+||||+|++||++|+
T Consensus 516 ------------------------------------------------------------~~pLh~Cdiy~s~~aG~~l~ 535 (595)
T PF01401_consen 516 ------------------------------------------------------------EGPLHRCDIYGSKEAGRKLK 535 (595)
T ss_dssp ------------------------------------------------------------TSSGGG---TT-HHHHHHHH
T ss_pred ------------------------------------------------------------CCCccccccccchhhHHHHH
Confidence 89999999999999999999
Q ss_pred HHHhCCCCCChHHHHHHhcCCCCCChhHHHHhhhHHHHHHHHHHhhhCCcccccC
Q psy17158 161 KMLSLGASKPWPEALEVLTGQKNLDAGPMLQYFDPLYKWLKEENRKTGTFVGWEK 215 (686)
Q Consensus 161 ~~m~~G~S~~W~~~l~~~tg~~~~~a~~ll~Yf~PL~~WL~~~N~k~~~~~GW~~ 215 (686)
+||++|||+||++||+++||+++|||+|||+||+||.+||+++|++++++|||+.
T Consensus 536 ~ml~~G~S~~W~~~l~~~tg~~~~~a~~ll~YF~PL~~wL~~~n~~~~~~~GW~~ 590 (595)
T PF01401_consen 536 KMLSLGSSKPWPEALEELTGEREMSASALLEYFQPLMDWLKEQNKKNGECVGWDE 590 (595)
T ss_dssp HHHTTTTSS-HHHHHHHHHSSSS--SHHHHHHHHHHHHHHHHHHHHTTS-SS-CS
T ss_pred HHhcCCCCCCHHHHHHHHhCCCCcChHHHHHHHHHHHHHHHHHHHhcCCcCCCCc
Confidence 9999999999999999999999999999999999999999999999999999984
No 5
>KOG3690|consensus
Probab=100.00 E-value=2.2e-42 Score=380.48 Aligned_cols=127 Identities=50% Similarity=1.031 Sum_probs=124.0
Q ss_pred CCCCCCCCCCCCccccCCCCchHHHHHHHHHHHhHHHHHHHHhCCCCCCCCCCCchhhhhcccchhhhhhhcCCchhhhh
Q psy17158 1 MPRSEDDFDPGSKYHIPNNVEYLRYFVSYISQFQFHKALCTEAGQFDPKNPLKTPLHQYYKDAGDSWIALYNQPHFKETI 80 (686)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (686)
+||++.||||++||||+++++|+|||+|+|+|||||||||++||||.|+||
T Consensus 494 ~~r~~~dfD~~akf~~~~d~~~~ryf~s~vlqFQf~kalC~~agq~~pg~p----------------------------- 544 (646)
T KOG3690|consen 494 VPRTNKDFDPPAKFHIQVDVSYTRYFLSTVLQFQFLKALCQAAGQYGPGDP----------------------------- 544 (646)
T ss_pred CcCccccCCchhhhccCcchHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC-----------------------------
Confidence 589999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccchhhhhhhHHHHHhhhhhcCCccccccCCcchhhHHHhhhhcccCCCCCCCCCCCCcccccCCCcHHHHHHHH
Q psy17158 81 EKLWTDIKPLYLELHAYVRRKLLAKYGPEVVFEKEPIPAHLLVHKALCTEAGQFDPKNPLKTPLHQCDIYGSKKAGNLFK 160 (686)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~c~~~~~~~~~~~~~~pLh~Cdiy~s~~aG~~l~ 160 (686)
..|||+||||+||+||++|+
T Consensus 545 ------------------------------------------------------------r~pLh~CDi~~sk~aG~kL~ 564 (646)
T KOG3690|consen 545 ------------------------------------------------------------RKPLHNCDIYDSKEAGEKLR 564 (646)
T ss_pred ------------------------------------------------------------CCCchhccccCCHHHHHHHH
Confidence 56999999999999999999
Q ss_pred HHHhCCCCCChHHHHHHhcCCCCCChhHHHHhhhHHHHHHHHHHhhhCCcccccCC
Q psy17158 161 KMLSLGASKPWPEALEVLTGQKNLDAGPMLQYFDPLYKWLKEENRKTGTFVGWEKG 216 (686)
Q Consensus 161 ~~m~~G~S~~W~~~l~~~tg~~~~~a~~ll~Yf~PL~~WL~~~N~k~~~~~GW~~~ 216 (686)
.||++|+|+||+||||++||+++||++||||||+||.+||+++|++.+..+||+..
T Consensus 565 ~~M~lG~S~~W~evLE~~tGe~els~~~LLeYFePL~~WLk~~N~~~~~~vGW~~~ 620 (646)
T KOG3690|consen 565 TMMSLGSSRHWREVLEEITGEGELSGRALLEYFEPLFTWLKQENERLNVEVGWDGE 620 (646)
T ss_pred HHHHccCCccHHHHHHHHcCCCcCChHHHHHHHHHHHHHHHhhhhhcCcccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999843
No 6
>cd06461 M2_ACE Peptidase family M2 Angiotensin converting enzyme (ACE, EC 3.4.15.1) is a membrane-bound, zinc dependent dipeptidase that catalyzes the conversion of the decapeptide angiotensin I to the potent vasopressor ocatapeptide angiotensin II, by removing two C-terminal amino acids. There are two forms of the enzyme in humans, the ubiquitous somatic ACE and the sperm-specific germinal ACE, both encoded by the same gene through transcription from alternative promoters. Somatic ACE has two tandem active sites with distinct catalytic properties, whereas germinal ACE, the function of which is largely unknown, has just a single active site. Recently, an ACE homolog, ACE2, has been identified in humans that differs from ACE; it preferentially removes carboxy-terminal hydrophobic or basic amino acids and appears to be important in cardiac function. ACE homologs (also known as members of the M2 gluzincin family) have been found in a wide variety of species, including those that neither h
Probab=100.00 E-value=1.2e-33 Score=314.12 Aligned_cols=109 Identities=66% Similarity=1.282 Sum_probs=106.9
Q ss_pred CCCCCCCCCCCCccccCCCCchHHHHHHHHHHHhHHHHHHHHhCCCCCCCCCCCchhhhhcccchhhhhhhcCCchhhhh
Q psy17158 1 MPRSEDDFDPGSKYHIPNNVEYLRYFVSYISQFQFHKALCTEAGQFDPKNPLKTPLHQYYKDAGDSWIALYNQPHFKETI 80 (686)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (686)
++|++++||||+||||+.++||||||+|+|+|||||++||++||+
T Consensus 369 ~~r~~~~fd~gak~h~~~~~PYi~YflA~ilqfQf~~~lc~~a~~----------------------------------- 413 (477)
T cd06461 369 VPRSEEDFDPGAKYHVPANTPYIRYFLSFILQFQFHKALCKAAGH----------------------------------- 413 (477)
T ss_pred CCCCccccCccceeeccCCCcHHHHHHHHHHHHHHHHHHHHhccC-----------------------------------
Confidence 479999999999999999999999999999999999999999999
Q ss_pred hhhhhccchhhhhhhHHHHHhhhhhcCCccccccCCcchhhHHHhhhhcccCCCCCCCCCCCCcccccCCCcHHHHHHHH
Q psy17158 81 EKLWTDIKPLYLELHAYVRRKLLAKYGPEVVFEKEPIPAHLLVHKALCTEAGQFDPKNPLKTPLHQCDIYGSKKAGNLFK 160 (686)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~c~~~~~~~~~~~~~~pLh~Cdiy~s~~aG~~l~ 160 (686)
+||||+||||+|++||++|+
T Consensus 414 ------------------------------------------------------------~~plh~C~~~~s~~Ag~~l~ 433 (477)
T cd06461 414 ------------------------------------------------------------TGPLHKCDIYGSKEAGKKLR 433 (477)
T ss_pred ------------------------------------------------------------CCCcccccccChHHHHHHHH
Confidence 89999999999999999999
Q ss_pred HHHhCCCCCChHHHHHHhcCCCCCChhHHHHhhhHHHHHHHHHH
Q psy17158 161 KMLSLGASKPWPEALEVLTGQKNLDAGPMLQYFDPLYKWLKEEN 204 (686)
Q Consensus 161 ~~m~~G~S~~W~~~l~~~tg~~~~~a~~ll~Yf~PL~~WL~~~N 204 (686)
+||++|+|+||+|+|+++||++.||+++|++||+||.+||+++|
T Consensus 434 ~~l~lG~S~~w~e~le~~~g~~~~s~~~l~eyf~pl~~wL~~~n 477 (477)
T cd06461 434 AMLSLGSSKPWPEALEALTGEREMDASALLEYFQPLIDWLKEQN 477 (477)
T ss_pred HHHhCcCCCCHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999987
No 7
>cd06258 Peptidase_M3_like The peptidase M3-like family, also called neurolysin-like family, is part of the "zincins" metallopeptidases, and includes M3, M2 and M32 families of metallopeptidases. The M3 family is subdivided into two subfamilies: the widespread M3A, which comprises a number of high-molecular mass endo- and exopeptidases from bacteria, archaea, protozoa, fungi, plants and animals, and the small M3B, whose members are enzymes primarily from bacteria. Well-known mammalian/eukaryotic M3A endopeptidases are the thimet oligopeptidase (TOP; endopeptidase 3.4.24.15), neurolysin (alias endopeptidase 3.4.24.16), and the mitochondrial intermediate peptidase. The first two are intracellular oligopeptidases, which act only on relatively short substrates of less than 20 amino acid residues, while the latter cleaves N-terminal octapeptides from proteins during their import into the mitochondria. The M3A subfamily also contains several bacterial endopeptidases, collectively called olig
Probab=99.95 E-value=1.4e-26 Score=248.49 Aligned_cols=277 Identities=21% Similarity=0.242 Sum_probs=222.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCCChHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCCcccc
Q psy17158 359 RKKYAKYVQILNEGVRLSHYKDAGDSWIALYNQPHFKETIEKLWTDIKPLYVELHAYVRRKLLAKYGPEVVFEKEPIPAH 438 (686)
Q Consensus 359 r~~y~~~V~L~N~aAr~nGf~d~ge~Wr~~Ye~~~~~~~~e~lw~qIkPLY~qLHayVR~kL~~~YG~~~v~~~gpIPAH 438 (686)
++++.++|+|+|+.|+.+||+|+.++|+..++..+ .+.+++++++|++.+..+++.++++|.+..+.+ ....+++|
T Consensus 1 ~~~l~~lv~lr~e~A~~lGy~~~~d~~l~~~~~~~-~e~v~~f~~~l~~~~~p~~~~~~~~l~~~~~~~-~~~~~~~~-- 76 (365)
T cd06258 1 SALLEELVSLRNQLARLLGYENFADYKLALQEAKS-PETVEGFFEELKRKLRPLLAKLREEISAAKQKE-EEIYGELP-- 76 (365)
T ss_pred ChHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCccccc--
Confidence 36799999999999999999999999999998874 578999999999999999999999998877644 34455555
Q ss_pred cccccccccccccccccccCCCCCCCChhHHHHHccCcHHHHHHHHHHHHHhcCCCCCChHHHhccccccCCCCCccccc
Q psy17158 439 LLGNMWAQSWSNIYDITQPYPDIQEPDITKELQRQNYTVLKMFKKAEDFFLSLNMSKMTTDFWENSVFVRPKDRDIVCHG 518 (686)
Q Consensus 439 LLGnmwaq~W~niyd~~~P~P~~~~~Dvt~~l~~q~yt~~~Mfk~Ae~FF~SLGL~~mp~~FW~~Sm~~kp~dr~v~Cha 518 (686)
| ..++++.++++.++..++++.+.++| --.++.||+ ..|||
T Consensus 77 ---------~--------------~~~~~~~~~~~~f~~~~~~~~~~~~~-------------~lD~~~R~g---K~~~a 117 (365)
T cd06258 77 ---------A--------------RYDVDSALLKEFFDAERPWEGALPFF-------------YLDLYDRKG---KYPHG 117 (365)
T ss_pred ---------c--------------cccCCHhhccCcCChHHHHHHHHHhH-------------hccCCCCCC---CCCCC
Confidence 3 45677888888888888888888888 111356666 47788
Q ss_pred ccccCCC-----CCceeEEecCcC---------CcchHHHHHHHHHHHHHHHHhcCCCC-CCCCCCCchhHhHHHHHHHH
Q psy17158 519 SAWDFHD-----GKTYRIKLCALV---------GEDDLTTIHHEMGHIEYDMMYSQQLP-FYQTSPNPGFHEAVGDTIVL 583 (686)
Q Consensus 519 sAwDf~~-----~~D~RIkmCt~v---------t~~Df~tvHHEmGHi~Y~~~Y~~qP~-~fR~gANpgFhEAIgd~iaL 583 (686)
.++++.. .+|+||.+|... +++|+.|++|||||+.|++..+.++. +.+.+.+.+|+|+.+.++.+
T Consensus 118 ~~~~~~~~~~~~~~~~~i~~n~~~~~~~~~~ll~~~~v~tl~HE~GHa~h~~l~~~~~~~~~g~~~~~~~~E~~S~~~E~ 197 (365)
T cd06258 118 FCTGLDPGFNRQDKDVRILANFTSPAAPDPVLLGHDDINTLFHEFGHAVHFLLIQQRYPFQERTPTSTDFAEAQSMFLES 197 (365)
T ss_pred eeccccCCCCCCCCeEEEEccCCCCCCCCCCcCCHHHHHHHHHHHhHHHHHHHhcCCCCcCCCCCCCccHHhccHHHHHH
Confidence 8888873 689999999998 99999999999999999998876644 47788899999999999999
Q ss_pred hhcChhHHHHhCCCCCCCCCChhhhHHHHH-HHhhhhhccCchhhhhhhhhHhhcCCCCChhhHHHHHHHHHHHhCcccC
Q psy17158 584 SVKTHKHLKRIGLLKEDFKDDPESTINELF-KFGLERLTFPPFGYLTDLWRWSVFNGSIPEDQYETAWWKLREEYQGVQP 662 (686)
Q Consensus 584 Sv~TP~hL~~iGLl~~~~~~~~e~~IN~Ll-~~AL~kI~fLPf~~~~D~WRw~VF~g~i~~~~~N~~WW~Lr~kYQGI~p 662 (686)
.+.+|.+|++++..... ..-....++.+. ......+..++..++.+.|++.||++.....+.|+.||++.++|+||.|
T Consensus 198 ~~~~~~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~l~~~~~g~~~ 276 (365)
T cd06258 198 FATDPEWLERYARHYQG-GVVPDELIEKLIAARLPNTLYETRRILVVAKFEKALYENPDRELELQKLWRDLVKEILGVRP 276 (365)
T ss_pred HHCCHHHHHHHhhhcCC-CCCcHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCCCCccCCHHHHHHHHHHHhcCCCC
Confidence 99999999988664322 111112333322 2234568888999999999999999976656899999999999999954
Q ss_pred CCCCCCCCCCccCcccccCCC
Q psy17158 663 PMPRSEDDFDPGSKYHIPNNV 683 (686)
Q Consensus 663 Pv~R~e~dFDpgAKyHI~~n~ 683 (686)
.+..++++.+.|+....
T Consensus 277 ----~~~~~~~~~~~H~~~gy 293 (365)
T cd06258 277 ----DPSTPDPAAFPHLAGGS 293 (365)
T ss_pred ----CCCCCCCCccchhccCc
Confidence 34457899999998643
No 8
>cd06459 M3B_Oligoendopeptidase_F Peptidase family M3B Oligopeptidase F (PepF; Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and includes oligoendopeptidase F from Lactococcus lactis. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids with fairly broad specificity. The PepF gene is duplicated in L. lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the PepF Bacillus amyloliquefaciens oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over expressed from a multicopy plasmid.
Probab=99.92 E-value=2e-23 Score=227.22 Aligned_cols=312 Identities=16% Similarity=0.126 Sum_probs=225.6
Q ss_pred CCccCCChhhHHHHHhcCCCHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHcCCCChHHHHhhcCC-cchHH
Q psy17158 320 TKCNLDFDPTVINIMATSRDPKELAYYWQEFRNKT---GKLMRKKYAKYVQILNEGVRLSHYKDAGDSWIALYN-QPHFK 395 (686)
Q Consensus 320 g~c~l~LepdL~~Ima~SrD~~eLk~aW~aWr~~v---g~~~r~~y~~~V~L~N~aAr~nGf~d~ge~Wr~~Ye-~~~~~ 395 (686)
|++ ++|.+ ....+.++.|.+.|+.+|.+|.+.. +..+.+.+.++|+++++.|+.+||+|+.+++...++ .+++.
T Consensus 30 G~~-~~l~~-~~~~~~~~~d~~~Rk~a~~a~~~~~~~~~~~~~~~l~~lv~~r~~~A~~~Gy~~~~~~~l~~~~~~~~~~ 107 (427)
T cd06459 30 GEE-LTLSQ-NLSNLLESPDREVRKKAFEALYKAYEKYENTLAAILNTLVKLRLTLAKLRGYDSYLEAALFNNNIPEDVY 107 (427)
T ss_pred CeE-EeccH-HHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHhhccCCCCHHHH
Confidence 777 88866 4555668899999999999987665 346889999999999999999999999999999998 56788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCCcccccccccccccccccccccccCCCCCCCChhHHHHHccC
Q psy17158 396 ETIEKLWTDIKPLYVELHAYVRRKLLAKYGPEVVFEKEPIPAHLLGNMWAQSWSNIYDITQPYPDIQEPDITKELQRQNY 475 (686)
Q Consensus 396 ~~~e~lw~qIkPLY~qLHayVR~kL~~~YG~~~v~~~gpIPAHLLGnmwaq~W~niyd~~~P~P~~~~~Dvt~~l~~q~y 475 (686)
+.+.++.+.+.|+++++++..++.| |.+.+. .+|+..|.+.... +.+
T Consensus 108 ~~l~~v~~~~~p~~~~~~~~~~~~l----g~~~l~--------------------~wD~~~~~~~~~~---------~~~ 154 (427)
T cd06459 108 DFLIAVVKENVPLLHRYLKLKKKLL----GLDKLR--------------------PYDLYAPLVSGNP---------PKY 154 (427)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHh----CCCcCc--------------------HhhcCCCCCCCCC---------CcC
Confidence 9999999999999999988766554 754432 2343333332211 123
Q ss_pred cHHHHHHHHHHHHHhcC--CCCCChHHHhcc---ccccCCCCCcccccccccCCCCCceeEEecCcCCcchHHHHHHHHH
Q psy17158 476 TVLKMFKKAEDFFLSLN--MSKMTTDFWENS---VFVRPKDRDIVCHGSAWDFHDGKTYRIKLCALVGEDDLTTIHHEMG 550 (686)
Q Consensus 476 t~~~Mfk~Ae~FF~SLG--L~~mp~~FW~~S---m~~kp~dr~v~ChasAwDf~~~~D~RIkmCt~vt~~Df~tvHHEmG 550 (686)
+..+..+.+.+.|.++| +..+-..+|++. +..||+++++-|+ +.+....+.||.||...+.+|+.|++||+|
T Consensus 155 ~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~iD~~~r~gK~~gaf~---~~~~~~~~p~i~~n~~~~~~~v~tl~HE~G 231 (427)
T cd06459 155 TYEEAKELVLEALSPLGPEYAEFAKRAFEERWIDVEPRKGKRSGAYC---TGLPPGKHPFILMNFNGTLDDVFTLAHELG 231 (427)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHhhCCCeeccCCCCCCCCeec---CCCCCCCCCeEEecCCCChhhHHHHHHHhh
Confidence 44444566666666666 222222334444 4589999765333 345556789999999999999999999999
Q ss_pred HHHHHH-HhcCCCCCCCCCCCchhHhHHHHHHHHhhcChhHHHHhCCCCCCCCCChhhhHHHHHHHhhhhhc-cCchhhh
Q psy17158 551 HIEYDM-MYSQQLPFYQTSPNPGFHEAVGDTIVLSVKTHKHLKRIGLLKEDFKDDPESTINELFKFGLERLT-FPPFGYL 628 (686)
Q Consensus 551 Hi~Y~~-~Y~~qP~~fR~gANpgFhEAIgd~iaLSv~TP~hL~~iGLl~~~~~~~~e~~IN~Ll~~AL~kI~-fLPf~~~ 628 (686)
|+.+++ .-..+|++.+. ..-.|+|+-+-+.-+-+ -.||. ... .+. + .--.++.+.++.+. +++-.++
T Consensus 232 Ha~h~~~~~~~~~~~~~~-~~~~~~E~~S~~~E~~~--~~~l~-----~~~-~~~-~-~~~~~~~~~~~~~~~~~~~~~~ 300 (427)
T cd06459 232 HAFHSYLSRDNQPYLYSD-YPIFLAEIASTFNELLL--FDYLL-----KFA-KDP-E-EKLYLLEHLLEDIRATLPRQTM 300 (427)
T ss_pred HHHHHHHHccCCCcccCC-CCchhhHHHHHHHHHHH--HHHHH-----HhC-CCH-H-HHHHHHHHHHHHHHHHHHHHHH
Confidence 976665 44567766654 44456665443333332 23442 111 221 2 23368888889888 9999999
Q ss_pred hhhhhHhhcCC-----CCChhhHHHHHHHHHHHhCcccCCCCCCCCCCCccCcccccC
Q psy17158 629 TDLWRWSVFNG-----SIPEDQYETAWWKLREEYQGVQPPMPRSEDDFDPGSKYHIPN 681 (686)
Q Consensus 629 ~D~WRw~VF~g-----~i~~~~~N~~WW~Lr~kYQGI~pPv~R~e~dFDpgAKyHI~~ 681 (686)
.++|.+.|+++ .+++++.++.||++.++|.|+.|+ .+.+..+.+..+.|+..
T Consensus 301 ~~~fe~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~g~~~~-~~~~~~~~w~~~~H~~~ 357 (427)
T cd06459 301 FAEFEHEVYENPEEGEPLTAEELNEIYRELEKKYGGDLVE-IDEEHGYEWARIPHFYY 357 (427)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCccc-cCCccCeeeeecCeecC
Confidence 99999999984 367889999999999999998876 56667788999999875
No 9
>TIGR02289 M3_not_pepF oligoendopeptidase, M3 family. This family consists of probable oligoendopeptidases in the M3 family, related to lactococcal PepF and group B streptococcal PepB (TIGR00181) but in a distinct clade with considerable sequence differences. The likely substrate is small peptides and not whole proteins, as with PepF, but members are not characterized and the activity profile may differ. Several bacteria have both a member of this family and a member of the PepF family.
Probab=99.92 E-value=6.3e-23 Score=232.65 Aligned_cols=326 Identities=14% Similarity=0.158 Sum_probs=232.6
Q ss_pred hHHhhhcc-ccCCCChH---hHHHHHHHHHHHHHhhhcceeccCCCCCCCCCCccCCChhhHHHHHhcCCCHHHHHHHHH
Q psy17158 273 KMTTDFWE-NSVFVRPK---DRDIYSSVLSDMQKLFATAKLCPYNASASNDTKCNLDFDPTVINIMATSRDPKELAYYWQ 348 (686)
Q Consensus 273 RqL~~L~~-g~a~L~~e---~~~el~~l~s~m~~iYstakvC~~~~~~~~~g~c~l~LepdL~~Ima~SrD~~eLk~aW~ 348 (686)
..|..+.. ....++++ ...+.+++.+.+.++.|+.+|... |+. +++ +++..+|. +.|++.|+.||+
T Consensus 97 ~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~y~~l~~~~~~~~~-------Ge~-~~l-~~~~~~l~-~~dr~~Rk~a~~ 166 (549)
T TIGR02289 97 ELLFKLIKNKLKLFNEKNIPLLQKENILSTKYREIISNISIIFE-------GEE-KTL-SQLKPYLQ-DPNRSTRKKAWY 166 (549)
T ss_pred HHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHhccEEEEC-------CEe-ccH-HHhhHHhh-CCCHHHHHHHHH
Confidence 33443444 44445543 446778999999999999999874 666 887 78999995 689999999999
Q ss_pred HHHH---HHhhHHHHHHHHHHHHHHHHHHHcCCCChHHHHh-----hcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17158 349 EFRN---KTGKLMRKKYAKYVQILNEGVRLSHYKDAGDSWI-----ALYNQPHFKETIEKLWTDIKPLYVELHAYVRRKL 420 (686)
Q Consensus 349 aWr~---~vg~~~r~~y~~~V~L~N~aAr~nGf~d~ge~Wr-----~~Ye~~~~~~~~e~lw~qIkPLY~qLHayVR~kL 420 (686)
+..+ .....+..+|.++|+++++.|+..||+|+.++-. ..|..+++.+.++.|.+.+.|+.+++....+++|
T Consensus 167 a~~~~~~~~~~~~~~il~~lv~~R~~~Akl~Gy~s~~e~~~~~~~r~~~~~e~v~~~l~~v~~~~~p~~~~~~~~k~k~l 246 (549)
T TIGR02289 167 ARSEFFAVVEEELDRIYDELVQIRTQIALNLGFSNYRDYMYKLKNRTDYSAEDCYKYRESILKYVVPLWTKLRKIKKKRL 246 (549)
T ss_pred HHHHHHhcCchhHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhcccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHhC
Confidence 9665 3445788999999999999999999999999942 2377888999999999999999987777665555
Q ss_pred HHhhCCCccCCCCCcccccccccccccccccccccccCCCCCCCChhHHHHHccCcHHHHHHHHHHHHHhcCCCCCChHH
Q psy17158 421 LAKYGPEVVFEKEPIPAHLLGNMWAQSWSNIYDITQPYPDIQEPDITKELQRQNYTVLKMFKKAEDFFLSLNMSKMTTDF 500 (686)
Q Consensus 421 ~~~YG~~~v~~~gpIPAHLLGnmwaq~W~niyd~~~P~P~~~~~Dvt~~l~~q~yt~~~Mfk~Ae~FF~SLGL~~mp~~F 500 (686)
|.+.+. .||...|++.++. ...++..++.+.+.+-|.+| ++...+|
T Consensus 247 ----G~~~l~--------------------~wD~~~~~~~~~~--------~~~~~~e~~~~~~~~~~~~l--~~~~~e~ 292 (549)
T TIGR02289 247 ----GIKTLR--------------------PWDESAVFLDGNV--------KPFGNVDFLLEKAEKMYKEL--SLEFYEF 292 (549)
T ss_pred ----CCCcCC--------------------hhhccCCCCCCCc--------CCCCCHHHHHHHHHHHhcCC--CcHHHHH
Confidence 744432 3344334432211 01134445555555556655 5556677
Q ss_pred Hhc----c---ccccCCCC-CcccccccccCCCCCceeEEecCcCCcchHHHHHHHHHHHHHH-HHhcCCCCCCCCCCCc
Q psy17158 501 WEN----S---VFVRPKDR-DIVCHGSAWDFHDGKTYRIKLCALVGEDDLTTIHHEMGHIEYD-MMYSQQLPFYQTSPNP 571 (686)
Q Consensus 501 W~~----S---m~~kp~dr-~v~ChasAwDf~~~~D~RIkmCt~vt~~Df~tvHHEmGHi~Y~-~~Y~~qP~~fR~gANp 571 (686)
+++ - +..||+++ +..|++. .....-+|+||...|.+|+.|++|||||+.-+ +....+|..+|.+.
T Consensus 293 ~~~~~~~~~iD~~~r~gK~~Gayc~~~----~~~~~P~I~~Nf~~t~~dv~TL~HElGHa~H~~~s~~~~~~~~~~~~-- 366 (549)
T TIGR02289 293 FNFMREKNLLDLESRKGKAAGGYCTYL----PKYKAPFIFSNFNGTSGDIDVLTHEAGHAFHVYESRKDLLPEYRWPT-- 366 (549)
T ss_pred HHHHHhcCccccCCCCCCCCCcccCCC----CCCCCcEEEEeCCCChhHHHHHHHHhhHHHHHHHhcCCcccccccCc--
Confidence 652 2 35899994 6666653 22345689999999999999999999999433 33344666666443
Q ss_pred hhHhHHHHHHHHh--hcChhHHHHhCCCCCCCCCChhhhHHHHHHHhhhhhccCchhhhhhhhhHhhcCC-CCChhhHHH
Q psy17158 572 GFHEAVGDTIVLS--VKTHKHLKRIGLLKEDFKDDPESTINELFKFGLERLTFPPFGYLTDLWRWSVFNG-SIPEDQYET 648 (686)
Q Consensus 572 gFhEAIgd~iaLS--v~TP~hL~~iGLl~~~~~~~~e~~IN~Ll~~AL~kI~fLPf~~~~D~WRw~VF~g-~i~~~~~N~ 648 (686)
. .++++.|++ ..+..||.+. . . +.+....+++.+..+.+.++|++.++|.|++.||++ ++|++++|+
T Consensus 367 -~--~~aE~aS~~~E~l~~~~l~~~--~----~-~~e~~~~~~~~~L~~~~~~~~~~~~~d~fe~~vy~~~~lt~~e~~~ 436 (549)
T TIGR02289 367 -Y--EAAELASMSMELLSMPWWDLF--Y----T-DEKDLKKAKISHLKGALSFLPYGVIVDHFQHWVYENPNHTPEERDE 436 (549)
T ss_pred -c--hhhhhhHHHHHHHHHHHHHHH--c----C-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHH
Confidence 3 355888887 4445555521 1 2 112234566666677888999999999999999997 799999999
Q ss_pred HHHHHHHHhC
Q psy17158 649 AWWKLREEYQ 658 (686)
Q Consensus 649 ~WW~Lr~kYQ 658 (686)
.|+++.++|.
T Consensus 437 ~~~~l~~~y~ 446 (549)
T TIGR02289 437 KYAELEKRYQ 446 (549)
T ss_pred HHHHHHHHhC
Confidence 9999999997
No 10
>COG1164 Oligoendopeptidase F [Amino acid transport and metabolism]
Probab=99.77 E-value=1.1e-15 Score=175.45 Aligned_cols=456 Identities=15% Similarity=0.114 Sum_probs=279.7
Q ss_pred cCCCcHHHHHHHHHHHhCCCCCChHHHHHHhcC-CCCCChhHHHHhhhHHHHHHHHHHhhhCCcccccCCCCCCcccccc
Q psy17158 148 DIYGSKKAGNLFKKMLSLGASKPWPEALEVLTG-QKNLDAGPMLQYFDPLYKWLKEENRKTGTFVGWEKGRNGNMWAQSW 226 (686)
Q Consensus 148 diy~s~~aG~~l~~~m~~G~S~~W~~~l~~~tg-~~~~~a~~ll~Yf~PL~~WL~~~N~k~~~~~GW~~~~~~~~~~A~W 226 (686)
+||.++++... ++.+. |.+.++..-. ...++++.|+++..=..+..+..++ ..+ -|.+
T Consensus 17 ~l~~~~~~~~~--~~~~~-----~~~~~~~~~~~~~~~s~~~l~~~l~~~e~~~~~l~~----~~~----------ya~~ 75 (598)
T COG1164 17 DLYPGDELWEA--EFLEE-----SKELLKALEFYELILSAEDLLEALEEYEKLEELLGR----LYA----------YASM 75 (598)
T ss_pred hhcCChHhhHH--HHHHH-----HHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHH----HHH----------HHHH
Confidence 46666666433 22221 3333333221 1467888888887766666655443 222 3578
Q ss_pred ccccCCCCCCCCCCchhHHHHHHHhhhHH------HHHHHHH----hhhccc----hhHhhHHhhhcc-ccCCCChHhHH
Q psy17158 227 SNIYDITQPYPDKQEPDITKELQRQGYTV------LKMFKKA----EDFFLS----LNMSKMTTDFWE-NSVFVRPKDRD 291 (686)
Q Consensus 227 ~y~Tnit~~n~~~~~~~~e~~~~~~~f~~------~~~~~~a----~~F~~~----~~~kRqL~~L~~-g~a~L~~e~~~ 291 (686)
.+++|.+++..+ +.....+...+++.. .+..+.. .++-.. ...+.-|+.+.. -+-.|+++.-+
T Consensus 76 ~~s~d~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~el~~~~e~~~~~~l~~~~~l~~y~~~l~~~~~~k~h~ls~~~Ek 153 (598)
T COG1164 76 KLSTDTTDEEAQ--KLYQKLEEFYADFSSALSFFEPELLELDEEVIQSLLTSGPELADYRFYLEELFRRKPHQLSAEEEK 153 (598)
T ss_pred HhhcccccHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHhcCcchhhhHHHHHHHHhhCcccCCHHHHH
Confidence 889998875443 122222323333321 2222211 111111 456666777777 67777777666
Q ss_pred HHHHHHHHHHHhh------hcceeccCCCCCCCCCCccCCChhhHHHHHhcCCCHHHHHHHHHHHHHHH---hhHHHHHH
Q psy17158 292 IYSSVLSDMQKLF------ATAKLCPYNASASNDTKCNLDFDPTVINIMATSRDPKELAYYWQEFRNKT---GKLMRKKY 362 (686)
Q Consensus 292 el~~l~s~m~~iY------stakvC~~~~~~~~~g~c~l~LepdL~~Ima~SrD~~eLk~aW~aWr~~v---g~~~r~~y 362 (686)
-+.++.-.+..-+ +.+.+-...... ..|+. +++. ++..+| +|.|.+.|+.||++|.+.. ...+...+
T Consensus 154 ll~~~~~~~~~~~~~~~~~~~~dl~~~~~~~-~~g~~-~~~~-~~~~ll-~~~Dr~~Rk~A~~a~~~~~~~~~~t~a~~l 229 (598)
T COG1164 154 LLAQLSPVGNSASNIFFDLTNSDLTFPDIGD-AKGKK-LTLE-QLLNLL-EDPDREVRKAAYEALYKAYEKHRNTLAALL 229 (598)
T ss_pred HHHhhhhhhcchhHHhhhhhccccccccccc-cccce-ecHH-HHHHHh-hCCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 6655554333222 223333221000 11345 7763 777777 9999999999999976543 34577788
Q ss_pred HHHHHHHHHHHHHcCCCChHHHH--hhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCCcccccc
Q psy17158 363 AKYVQILNEGVRLSHYKDAGDSW--IALYNQPHFKETIEKLWTDIKPLYVELHAYVRRKLLAKYGPEVVFEKEPIPAHLL 440 (686)
Q Consensus 363 ~~~V~L~N~aAr~nGf~d~ge~W--r~~Ye~~~~~~~~e~lw~qIkPLY~qLHayVR~kL~~~YG~~~v~~~gpIPAHLL 440 (686)
...|+..+.-|+.-||+|+.+.- +..++.+.+...++.+-+...||.....+..++.| |-+.+.
T Consensus 230 ~~~~~~~~~~a~~r~y~~~~~~~l~~~~i~~~~~d~l~~~v~~~~~~l~~ry~~~r~k~L----gl~~l~---------- 295 (598)
T COG1164 230 NTLVKVLAFLARARNYDDVIDSALLRNEVDREVVDNLIESVKEAFLPLLHRYYKLRAKVL----GLEKLR---------- 295 (598)
T ss_pred HHHHHHHHHHHhhcCcchHHHHHHHhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHh----CcccCC----------
Confidence 88899999999999999998874 34444443444444444444466666666655555 876665
Q ss_pred cccccccccccccccccCCCC---CCCChhHHHH--HccCc--HHHHHHHHHHHHHhcCCCCCChHHHhccccccCCC-C
Q psy17158 441 GNMWAQSWSNIYDITQPYPDI---QEPDITKELQ--RQNYT--VLKMFKKAEDFFLSLNMSKMTTDFWENSVFVRPKD-R 512 (686)
Q Consensus 441 Gnmwaq~W~niyd~~~P~P~~---~~~Dvt~~l~--~q~yt--~~~Mfk~Ae~FF~SLGL~~mp~~FW~~Sm~~kp~d-r 512 (686)
.||.-.|++.+ +.+++.++.. .+.+. +.++.+.+...|.+ |..- ..++|++ .
T Consensus 296 ----------~yD~~~p~~~~~~~~~~s~~ea~~~v~~~l~~lg~ey~~~~~~a~~~-~WiD---------~~~~~gKrs 355 (598)
T COG1164 296 ----------PYDLYAPLLDKDPSPEYSYEEAKELVLKALAPLGPEYAKIARRAFDE-RWID---------VYPRKGKRS 355 (598)
T ss_pred ----------HHhhcCCcccCCCCccccHHHHHHHHHHHHHhhCHHHHHHHHHHHhc-CCee---------ccCCCCCCC
Confidence 67777776553 2334333321 11111 11222333333333 2222 3478888 6
Q ss_pred CcccccccccCCCCCceeEEecCcCCcchHHHHHHHHHHHHHH-HHhcCCCCCCCCCCCchhHhHHHHHHHHh--hcChh
Q psy17158 513 DIVCHGSAWDFHDGKTYRIKLCALVGEDDLTTIHHEMGHIEYD-MMYSQQLPFYQTSPNPGFHEAVGDTIVLS--VKTHK 589 (686)
Q Consensus 513 ~v~ChasAwDf~~~~D~RIkmCt~vt~~Df~tvHHEmGHi~Y~-~~Y~~qP~~fR~gANpgFhEAIgd~iaLS--v~TP~ 589 (686)
+..|+.+ +.+...+|+|+...|+.|+.|+.||+||...+ ...+.||+++++.+ +..| ++.|++ ..+-.
T Consensus 356 GaYs~~~----~~~~~p~IlmN~~gt~~dV~TLaHElGHs~Hs~~s~~~qp~~~~~~~---i~~A--EiAS~fnE~l~~~ 426 (598)
T COG1164 356 GAYSIGF----YKGDHPFILMNYDGTLRDVFTLAHELGHSVHSYFSRKHQPYLYADYS---IFLA--EIASTFNEMLLFD 426 (598)
T ss_pred CcccCCC----CCCCCCeEEEeCCCchhHHHHHHHHccHHHHHHHHhccCCccccCCc---hHHH--HHHHHHHHHHHHH
Confidence 8888854 55577899999999999999999999999666 34688998866654 4444 777766 33445
Q ss_pred HHHHhCCCCCCCCCChhhhHHHHHHHhhhhhccCchhhhhhhhhHhhcC-----CCCChhhHHHHHHHHHHHhCcccCCC
Q psy17158 590 HLKRIGLLKEDFKDDPESTINELFKFGLERLTFPPFGYLTDLWRWSVFN-----GSIPEDQYETAWWKLREEYQGVQPPM 664 (686)
Q Consensus 590 hL~~iGLl~~~~~~~~e~~IN~Ll~~AL~kI~fLPf~~~~D~WRw~VF~-----g~i~~~~~N~~WW~Lr~kYQGI~pPv 664 (686)
||- .. ..+.+..+..|.++.-+-+.+++-..+.+.|.+.|++ +.+|++++|+.|+++..+|.|=.+..
T Consensus 427 ~ll-----~~--~~~~~~~~~il~~~l~~~~~t~~rq~~f~~FE~~~h~~~~~~~~lt~~~l~~~~~~l~~~y~gd~~~~ 499 (598)
T COG1164 427 YLL-----ER--FKDPEERLAILEEKLEGFFATLFRQTLFAEFEHRVHELIEEGEELTAEELNELYLELQKEYYGDAVKL 499 (598)
T ss_pred HHH-----HH--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCcccc
Confidence 544 22 2333556777888888899999999999999999995 46899999999999999999988554
Q ss_pred CCCCCCCCccCcccccC
Q psy17158 665 PRSEDDFDPGSKYHIPN 681 (686)
Q Consensus 665 ~R~e~dFDpgAKyHI~~ 681 (686)
... .--.|+.+=|+-.
T Consensus 500 d~~-~~~~W~~ipHfy~ 515 (598)
T COG1164 500 DEL-SGLEWARIPHFYH 515 (598)
T ss_pred Ccc-cccchhhcCeeee
Confidence 443 2344566656554
No 11
>TIGR00181 pepF oligoendopeptidase F. This family represents the oligoendopeptidase F clade of the family of larger M3 or thimet (for thiol-dependent metallopeptidase) oligopeptidase family. Lactococcus lactis PepF hydrolyzed peptides of 7 and 17 amino acids with fairly broad specificity. The homolog of lactococcal PepF in group B Streptococcus was named PepB (PubMed:8757883), with the name difference reflecting a difference in species of origin rather activity; substrate profiles were quite similar. Differences in substrate specificity should be expected in other species. The gene is duplicated in Lactococcus lactis on the plasmid that bears it. A shortened second copy is found in Bacillus subtilis.
Probab=99.75 E-value=7.1e-15 Score=168.23 Aligned_cols=431 Identities=12% Similarity=0.076 Sum_probs=256.5
Q ss_pred HHHHHhcCCCCCChhHHHHhhhHHHHHHHHHHhhhCCcccccCCCCCCccccccccccCCCCCCCCCCchhHHHHHHHhh
Q psy17158 173 EALEVLTGQKNLDAGPMLQYFDPLYKWLKEENRKTGTFVGWEKGRNGNMWAQSWSNIYDITQPYPDKQEPDITKELQRQG 252 (686)
Q Consensus 173 ~~l~~~tg~~~~~a~~ll~Yf~PL~~WL~~~N~k~~~~~GW~~~~~~~~~~A~W~y~Tnit~~n~~~~~~~~e~~~~~~~ 252 (686)
+.++...|...-++..|+++.+.+.+.....++-.. -|.=.+.+|.++...+ ....+++...++
T Consensus 34 ~~l~~~~~~~~~~~~~l~~~l~~~e~~~~~~~~l~~--------------Ya~l~~s~d~~d~~~~--~~~~~~~~l~s~ 97 (591)
T TIGR00181 34 KEIKAFKKGLLHSKETFLEALALEEKILILLNRLYN--------------YASMKLSTDVTDPEAN--AISQKLSNLYTK 97 (591)
T ss_pred HHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHHH--------------HhccccccCCCCHHHH--HHHHHHHHHHHH
Confidence 334445554444788999999999998877664211 2233455554443222 244555555555
Q ss_pred hHH------HHHHHH----Hhhh-ccc---hhHhhHHhhhcc-ccCCCChHhHHHHHHHH---HHHHHhhhc---ceecc
Q psy17158 253 YTV------LKMFKK----AEDF-FLS---LNMSKMTTDFWE-NSVFVRPKDRDIYSSVL---SDMQKLFAT---AKLCP 311 (686)
Q Consensus 253 f~~------~~~~~~----a~~F-~~~---~~~kRqL~~L~~-g~a~L~~e~~~el~~l~---s~m~~iYst---akvC~ 311 (686)
+.. .+.... ..++ +.. ...++-|+.+.. .+..|+++.-+.++++. +...++|+. +.+-.
T Consensus 98 ~~~~~sf~~~eL~~l~~~~~~~~l~~~~~L~~y~~~l~~~~r~k~h~Ls~e~E~lLa~~~~~~~a~~~~f~~l~~ad~~f 177 (591)
T TIGR00181 98 VASATSFFEPEILEIEEKIIKEWLKDPEELADYKRALEEIFRDKPHILSEEVEKLLSALSEVFGSPSDIYSTLTNADMDF 177 (591)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHhcChhhHHHHHHHHHHHHhCCCCCCHHHHHHHHhCchhhccHHHHHHHHHhccCCC
Confidence 541 111110 1122 111 345556666666 77889987666665554 444555543 21211
Q ss_pred CCCCCCCCCCc-cCCChhhHHHHHhcCCCHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHcCCCChHHHHhh
Q psy17158 312 YNASASNDTKC-NLDFDPTVINIMATSRDPKELAYYWQEFRNKTG---KLMRKKYAKYVQILNEGVRLSHYKDAGDSWIA 387 (686)
Q Consensus 312 ~~~~~~~~g~c-~l~LepdL~~Ima~SrD~~eLk~aW~aWr~~vg---~~~r~~y~~~V~L~N~aAr~nGf~d~ge~Wr~ 387 (686)
... ....|+. +++ .|....+|+.|.|.+.|+.+|+++.+... ..+..+|..+|+++++.|+..||+++-++=..
T Consensus 178 ~~~-~~~~G~~~~l~-~~~~~~~l~~~~dr~~Rk~a~~a~~~~~~~~~~~~a~~l~~~v~~r~~~A~lrGy~s~~~~~l~ 255 (591)
T TIGR00181 178 GSI-EDYKGKKYPIT-NSTYENFLQKNKDREIRKKAYESFYKAYRKHKNTFAALYYGNVQKNVFLAKLRNYESYIDASLF 255 (591)
T ss_pred Cce-ecCCCcEEecc-HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHhc
Confidence 100 0012544 245 36888999889999999999999776544 36889999999999999999999999998432
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCCcccccccccccccccccccccccCCCCC--CCC
Q psy17158 388 LYNQPHFKETIEKLWTDIKPLYVELHAYVRRKLLAKYGPEVVFEKEPIPAHLLGNMWAQSWSNIYDITQPYPDIQ--EPD 465 (686)
Q Consensus 388 ~Ye~~~~~~~~e~lw~qIkPLY~qLHayVR~kL~~~YG~~~v~~~gpIPAHLLGnmwaq~W~niyd~~~P~P~~~--~~D 465 (686)
.=+. =++.++.|++.|+..+..+|.|.+.|= +..|.+.+. .||.-.|.+... .++
T Consensus 256 ~~~i--~~~v~~~l~~~v~~~~~~~~~y~~~k~-k~lg~~~l~--------------------~~D~~~~~~~~~~~~~~ 312 (591)
T TIGR00181 256 SDEV--PREVYDNLYDTIKKNAPVLQRYYKLRK-KVLKLDKME--------------------PYDLYLPLVKEKNPKFS 312 (591)
T ss_pred cCCC--CHHHHHHHHHHHHHhhHHHHHHHHHHH-HHhCCCccc--------------------HHHccCCCCCCcCCccc
Confidence 2221 224567777777777777788876542 334855443 344444444322 233
Q ss_pred hhHHHHHccCcHHHHHHHHHHHHHhcCCCCCChHHHh-------c---cccccCCCC-CcccccccccCCCCCceeEEec
Q psy17158 466 ITKELQRQNYTVLKMFKKAEDFFLSLNMSKMTTDFWE-------N---SVFVRPKDR-DIVCHGSAWDFHDGKTYRIKLC 534 (686)
Q Consensus 466 vt~~l~~q~yt~~~Mfk~Ae~FF~SLGL~~mp~~FW~-------~---Sm~~kp~dr-~v~ChasAwDf~~~~D~RIkmC 534 (686)
..+ +++++-.+ |.++.++|=+ + -.++||++| +..|..+ +. ..-+|+||
T Consensus 313 ~~~--------a~~~v~~~--------~~~~g~~~~~~~~~~~~~~wiD~~~r~gK~~Ga~~~~~----~~-~~p~il~N 371 (591)
T TIGR00181 313 IEE--------AKELILKS--------LEPLGEEYIKILKRAFNERWVDYAENKGKRSGAYSIGG----YK-VKPYILMN 371 (591)
T ss_pred HHH--------HHHHHHHH--------HhccCHHHHHHHHHHhhCCCeeecCCCCCCCCcccCCC----CC-CCCeEEEe
Confidence 221 12221111 2334444433 1 246889995 5555543 33 46789999
Q ss_pred CcCCcchHHHHHHHHHHHHHHH-HhcCCCCCCCCCCCchhHhHHHHHHHHh--hcChhHHHHhCCCCCCCCCChhhhHHH
Q psy17158 535 ALVGEDDLTTIHHEMGHIEYDM-MYSQQLPFYQTSPNPGFHEAVGDTIVLS--VKTHKHLKRIGLLKEDFKDDPESTINE 611 (686)
Q Consensus 535 t~vt~~Df~tvHHEmGHi~Y~~-~Y~~qP~~fR~gANpgFhEAIgd~iaLS--v~TP~hL~~iGLl~~~~~~~~e~~IN~ 611 (686)
...+++|+.|+.|||||..-++ ..++||++.. ++... ++++.|.. ...-.||- .. ..+. ..-..
T Consensus 372 ~~~~~~dv~TLaHElGHa~H~~~~~~~~~~~~~---~~~~~--~aE~aS~~~E~l~~~~l~-----~~--~~~~-~~k~~ 438 (591)
T TIGR00181 372 WDGTLNSVFTLAHELGHSMHSYFSSKHQPYPNS---DYSIF--YAEIASTFNELLLADYLL-----KN--SNDP-EMKIY 438 (591)
T ss_pred cCCCcchHHHHHHHhhhHHHHHHHccCCCCccC---CCCch--hhhHhHHHHHHHHHHHHH-----hh--CCCH-HHHHH
Confidence 9999999999999999995333 3467897754 33332 33666655 22233432 21 1222 22345
Q ss_pred HHHHhhh-hhccCchhhhhhhhhHhhcC-----CCCChhhHHHHHHHHHHHhCcccCCCCCCCCCCCccCcccc
Q psy17158 612 LFKFGLE-RLTFPPFGYLTDLWRWSVFN-----GSIPEDQYETAWWKLREEYQGVQPPMPRSEDDFDPGSKYHI 679 (686)
Q Consensus 612 Ll~~AL~-kI~fLPf~~~~D~WRw~VF~-----g~i~~~~~N~~WW~Lr~kYQGI~pPv~R~e~dFDpgAKyHI 679 (686)
++...|+ -..+++-..+.+.|...|++ +.+++++.|+.|-++.++|-|.. ++......+-+..+-|+
T Consensus 439 ~l~~~l~~~~~~~~~q~~~~~Fe~~~~~~~~~~~~lt~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~w~~~~Hf 511 (591)
T TIGR00181 439 ILLERISNFFGTFTRQTLFAEFEYEAYELIEEGEPLTAETLNEIYANLLKKYFGDL-VKIDEGAGLTWMRIPHF 511 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcCCc-cccCCcccceeeecCcc
Confidence 6666666 55567788889999999995 47899999999999999987852 22222222344455554
No 12
>TIGR02290 M3_fam_3 oligoendopeptidase, pepF/M3 family. The M3 family of metallopeptidases contains several distinct clades. Oligoendopeptidase F as characterized in Lactococcus, the functionally equivalent oligoendopeptidase B of group B Streptococcus, and closely related sequences are described by TIGR00181. The present family is quite similar but forms a distinct clade, and a number of species have one member of each. A greater sequence difference separates members of TIGR02289, probable oligoendopeptidases of the M3 family that probably should not be designated PepF.
Probab=99.68 E-value=1.1e-13 Score=158.74 Aligned_cols=350 Identities=16% Similarity=0.172 Sum_probs=211.1
Q ss_pred hHhhHHhhhcc-ccCCCChHhHHHHHHHH----HHHHHhhh----cceeccCCCCCCCCCC-ccCCChhhHHHHHhcCCC
Q psy17158 270 NMSKMTTDFWE-NSVFVRPKDRDIYSSVL----SDMQKLFA----TAKLCPYNASASNDTK-CNLDFDPTVINIMATSRD 339 (686)
Q Consensus 270 ~~kRqL~~L~~-g~a~L~~e~~~el~~l~----s~m~~iYs----takvC~~~~~~~~~g~-c~l~LepdL~~Ima~SrD 339 (686)
..+..|..+.. .+..|+++.-+-++++. +....+|+ ..++-..+ ..|+ -.+++ .++..++ +|.|
T Consensus 127 ~y~~~l~~~~~~~~h~Ls~e~E~ll~~~~~~~~~~~~~~y~~l~~~~~~~~~~----~~G~~~~~t~-~~~~~~l-~~~d 200 (587)
T TIGR02290 127 PYRFYLKELRKEAPHTLSEEEEKLINALSLTGRAAWSRLYDELTGTLRIPVDG----KDGEEETLSL-EQALNLL-RDPD 200 (587)
T ss_pred HHHHHHHHHHHcCCcCCCHHHHHHHHhcccchhhhHHHHHHHHHccCcceeec----CCCceEEcCH-HHHHHHH-hCcC
Confidence 33455666666 77788887666666653 44555554 33332210 0132 12774 6888876 7889
Q ss_pred HHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHcCCCChHHHHh--hcCCcchHHHHHHHHHHHHHHHHHHHHH
Q psy17158 340 PKELAYYWQEFRNK---TGKLMRKKYAKYVQILNEGVRLSHYKDAGDSWI--ALYNQPHFKETIEKLWTDIKPLYVELHA 414 (686)
Q Consensus 340 ~~eLk~aW~aWr~~---vg~~~r~~y~~~V~L~N~aAr~nGf~d~ge~Wr--~~Ye~~~~~~~~e~lw~qIkPLY~qLHa 414 (686)
.+.|+.||+++.+. ....+..+|...|+.++..||..||+|+-++-. ..++.+.+...++.+-+. .| -+|.
T Consensus 201 r~~Rk~a~~~~~~~~~~~~~~~a~~l~~~v~~~~~~a~~rgy~s~~e~~l~~~~i~~~~~~~l~~~v~~~-~p---~~~~ 276 (587)
T TIGR02290 201 AEVRKKAFKALLKAWEKNAPTLAAILNALAGDRLTEYRLRGYDHPLEPRLLYNRIDQETLDAMLEAIKEN-YP---LFRR 276 (587)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHhhccCCCCHHHHHHHHHHHHHh-hH---HHHH
Confidence 99999999995543 445688889999999999999999999999743 334433444444444444 34 4566
Q ss_pred HHHHHHHHhhCCCccCCCCCcccccccccccccccccccccccCCCC--CCCChhHHHHHccCcHHHHHHHHHHHHHhcC
Q psy17158 415 YVRRKLLAKYGPEVVFEKEPIPAHLLGNMWAQSWSNIYDITQPYPDI--QEPDITKELQRQNYTVLKMFKKAEDFFLSLN 492 (686)
Q Consensus 415 yVR~kL~~~YG~~~v~~~gpIPAHLLGnmwaq~W~niyd~~~P~P~~--~~~Dvt~~l~~q~yt~~~Mfk~Ae~FF~SLG 492 (686)
|.+.+ ++..|.+.+. .||...|.+.. +.+. -.+..+.+.+=|..||
T Consensus 277 y~~~k-~~~lgl~~l~--------------------~~D~~~p~~~~~~~~~~-----------~e~a~~~v~~~~~~l~ 324 (587)
T TIGR02290 277 YYKLK-AKLLGKEKLD--------------------FYDLYAPLGDSSAKTYT-----------FDEAKELVLEAFGKFS 324 (587)
T ss_pred HHHHH-HHHhCCCccc--------------------HHHcCCCCCCCCCCeec-----------HHHHHHHHHHHHHhcC
Confidence 65543 3445866554 45555555532 2222 2222233323244333
Q ss_pred CCCCChHH----Hhcc---ccccCCCC-CcccccccccCCCCCceeEEecCcCCcchHHHHHHHHHHHHHHHHhcCCCCC
Q psy17158 493 MSKMTTDF----WENS---VFVRPKDR-DIVCHGSAWDFHDGKTYRIKLCALVGEDDLTTIHHEMGHIEYDMMYSQQLPF 564 (686)
Q Consensus 493 L~~mp~~F----W~~S---m~~kp~dr-~v~ChasAwDf~~~~D~RIkmCt~vt~~Df~tvHHEmGHi~Y~~~Y~~qP~~ 564 (686)
|.-.++ +++. +..||+++ +..|+. +..+...+|.|+...+.+|+.|+.||+||+.++..-+++|++
T Consensus 325 --~e~~~~~~~~~~~~~iD~~~r~gK~~Ga~~~~----~~~~~~p~i~~N~~~~~~~v~TL~HE~GHa~H~~ls~~~~~~ 398 (587)
T TIGR02290 325 --PEMADFAEKAFEEGWIDAEPRPGKRGGAFCTG----FPPSKEPRVLMNYDGSRRDVSTLAHELGHAYHSELAKDQPLL 398 (587)
T ss_pred --HHHHHHHHHHHHcCCcccCCCCCCCCCcccCC----CCCCCCCEEEEecCCCchhHHHHHHHhhHHHHHHHHccCCcc
Confidence 111122 2222 35889995 445544 333345689999999999999999999999876544678877
Q ss_pred CCCCCCchhHhHHHHHHHHh--hcChhHHHHhCCCCCCCCCChhhhHHHHHHHhhhhhc-cCchhhhhhhhhHhhc----
Q psy17158 565 YQTSPNPGFHEAVGDTIVLS--VKTHKHLKRIGLLKEDFKDDPESTINELFKFGLERLT-FPPFGYLTDLWRWSVF---- 637 (686)
Q Consensus 565 fR~gANpgFhEAIgd~iaLS--v~TP~hL~~iGLl~~~~~~~~e~~IN~Ll~~AL~kI~-fLPf~~~~D~WRw~VF---- 637 (686)
+.. .-..|. ++.|+. ...-.|| +... .++ + ....++..-++.+. ++.--.+.+.|...|+
T Consensus 399 ~~~-~~~~~a----E~~S~~~E~l~~~~l-----l~~~-~~~-~-~~~~~~~~~l~~~~~~~~~q~~~~~fE~~l~~~~~ 465 (587)
T TIGR02290 399 NAR-YPMTLA----ETASIFAEMLLFDAL-----LKEA-KTD-E-EKLSLLAEKLEDAIATLVRIHARFLFERRFHEARK 465 (587)
T ss_pred cCC-CCchhh----hHHHHHHHHHHHHHH-----HhhC-CCH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 643 223344 444443 1122332 2211 222 1 23344444444333 5677788888888888
Q ss_pred CCCCChhhHHHHHHHHHHHhCcccCCCCCCCCCCCccCcccccC
Q psy17158 638 NGSIPEDQYETAWWKLREEYQGVQPPMPRSEDDFDPGSKYHIPN 681 (686)
Q Consensus 638 ~g~i~~~~~N~~WW~Lr~kYQGI~pPv~R~e~dFDpgAKyHI~~ 681 (686)
+|.+++++.++.|.++.++|-|..++. ......-+..+-|+-.
T Consensus 466 ~~~lt~~~l~~~~~~~~~~~~g~~~~~-~~~~~~~w~~~~H~y~ 508 (587)
T TIGR02290 466 EGELSADDICDLMLEAQKESYGDALDE-SELHPYMWAYKPHFYH 508 (587)
T ss_pred cCCCCHHHHHHHHHHHHHHHhCccccc-CCCCCceeecCCeecC
Confidence 488999999999999999987875332 2212245677788754
No 13
>PF01432 Peptidase_M3: Peptidase family M3 This Prosite motif covers only the active site. This family belongs to family M3 of the peptidase classification.; InterPro: IPR001567 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M3 (clan MA(E)), subfamilies M3A and M3B. The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. The Thimet oligopeptidase family, is a large family of archaeal, bacterial and eukaryotic oligopeptidases that cleave medium sized peptides. The group contains: mitochondrial intermediate peptidase (3.4.24.59 from EC) Neurolysin, mitochondrial precursor, (3.4.24.16 from EC) Thimet oligopeptidase (3.4.24.15 from EC) Dipeptidyl carboxypeptidase (3.4.15.5 from EC) Oligopeptidase A (3.4.24.70 from EC) Oligoendopeptidase F ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QR4_B 3CE2_A 1Y79_1 2H1J_A 2H1N_A 2O36_A 1S4B_P 2O3E_A 1I1I_P.
Probab=99.51 E-value=1.5e-12 Score=144.70 Aligned_cols=303 Identities=17% Similarity=0.218 Sum_probs=187.8
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHhh---HH--HHHHHHHHHHHHHHHHHcCCCChHHHHhh---cCCcchHHHHHHHHHHH
Q psy17158 333 IMATSRDPKELAYYWQEFRNKTGK---LM--RKKYAKYVQILNEGVRLSHYKDAGDSWIA---LYNQPHFKETIEKLWTD 404 (686)
Q Consensus 333 Ima~SrD~~eLk~aW~aWr~~vg~---~~--r~~y~~~V~L~N~aAr~nGf~d~ge~Wr~---~Ye~~~~~~~~e~lw~q 404 (686)
+|..+.|.+.|+.+|.+|.+.... .+ ...+.++|+++++.|+..||+|+.++-.. ....+++.+.++.+.++
T Consensus 1 ~l~~~~d~~~Rk~~~~a~~~~~~~~~~~~~n~~~l~~l~~~R~~~A~llGy~s~~~~~l~~~m~~~~~~v~~fL~~~~~~ 80 (458)
T PF01432_consen 1 VLKYSPDRELRKKAYRAYYSRYSDNQPTLDNAAILNELLKLRNELAKLLGYPSYAEYSLQDKMAKNPENVLDFLDELVKK 80 (458)
T ss_dssp HHHC-S-HHHHHHHHHHHHTTTHHTHHHHHHHHHHHHHHHHHHHHHHHTT-SSHHHHHHTTSTTTSHHHHHHHHHHHHHH
T ss_pred CCCcCcCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHhhhcCChHHHHHHHHHHHHH
Confidence 578999999999999999976542 45 88999999999999999999999998433 33457888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCC-ccCCCCCccccccccccccccccccc--ccccCCCCCCCChhHHHHHccC----cH
Q psy17158 405 IKPLYVELHAYVRRKLLAKYGPE-VVFEKEPIPAHLLGNMWAQSWSNIYD--ITQPYPDIQEPDITKELQRQNY----TV 477 (686)
Q Consensus 405 IkPLY~qLHayVR~kL~~~YG~~-~v~~~gpIPAHLLGnmwaq~W~niyd--~~~P~P~~~~~Dvt~~l~~q~y----t~ 477 (686)
++|+.++....+++-..+..|.+ .+. .|.--|- ...- ..+++++.-.+.-+ ..
T Consensus 81 ~~p~~~~~~~~l~~~~~~~~g~~~~l~----------------~wD~~y~~~~~~~----~~~~~~~~~~~~~f~~~~~~ 140 (458)
T PF01432_consen 81 LKPLLERELELLKKLKKKRLGLEKKLR----------------PWDVAYYMEQYRQ----ERYDLDEEELSPYFPLEEVL 140 (458)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-SSSBB----------------GGGHHHHHHHHHH----HHTSSSHHHHGGG-BHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccccc----------------cchhHHHhhHHHH----HHhccchhhcCCcCcHHHHH
Confidence 99999998888888777777855 442 2433100 0000 00001111111111 12
Q ss_pred HHHHHHHHHHHHhcCCCCCC---hHHHhc----------------------cccccCCCCCc-ccccccccCCC----CC
Q psy17158 478 LKMFKKAEDFFLSLNMSKMT---TDFWEN----------------------SVFVRPKDRDI-VCHGSAWDFHD----GK 527 (686)
Q Consensus 478 ~~Mfk~Ae~FF~SLGL~~mp---~~FW~~----------------------Sm~~kp~dr~v-~ChasAwDf~~----~~ 527 (686)
+-|+..+++.|- +=|.+.+ .+-|.. -++.||+++++ .|.+..-...+ -+
T Consensus 141 ~g~~~l~~~lfg-i~~~~~~~~~~~~w~~dv~~~~v~d~~~~~~~ig~~ylDl~~R~gK~~ga~~~~~~~~~~~~~~~~~ 219 (458)
T PF01432_consen 141 EGLFELAERLFG-IRFEEVPDADGEVWHPDVRKFEVWDEIFSGMFIGYIYLDLYPRPGKRSGAFCFTLRPSRSDGERQLP 219 (458)
T ss_dssp HHHHHHHHHHHT-EEEEECTCGGHHHSSTT-EEEEEEETHTTHCECEEEEEEES--TTS-SS-EEEEEEC-BTTSTCECE
T ss_pred HHHHHHHHHHhc-EEEEecccccccceecceeEEEEeehhhcccchhcccccchhcCCCCCCceeCCccCccccccCCCC
Confidence 347778777762 0111111 133332 13489998554 44443221100 15
Q ss_pred ceeEEecCcC---------CcchHHHHHHHHHHHHHHHHh-cCCCCCCCCCCCchhHhHHHHHHHHhhcChhHHHHhCCC
Q psy17158 528 TYRIKLCALV---------GEDDLTTIHHEMGHIEYDMMY-SQQLPFYQTSPNPGFHEAVGDTIVLSVKTHKHLKRIGLL 597 (686)
Q Consensus 528 D~RIkmCt~v---------t~~Df~tvHHEmGHi~Y~~~Y-~~qP~~fR~gANpgFhEAIgd~iaLSv~TP~hL~~iGLl 597 (686)
..+|.||... +.+|+.|+.||+||+.-.+.- ..+|.+.....--.|-|..+.++-.-+..|..|+.+.
T Consensus 220 ~~~i~~n~~~~~~~~~~ll~~~~v~tLfHE~GHa~H~~ls~~~~~~~sg~~~~~d~aE~~S~~~E~~~~~~~~l~~~~-- 297 (458)
T PF01432_consen 220 VPYIFCNFTGPSAGKPSLLSHDDVETLFHEFGHAMHSLLSRTKYQHLSGTRVPMDFAEFPSQFMENWLWDPLVLKAFS-- 297 (458)
T ss_dssp EEEEEEEE-S-BTTC--B-SHHHHHHHHHHHHHHHHHHHCCCSSGGGSTTSS-CHHCHHHHHHHHHHGGCHHHHHHH---
T ss_pred ceEEEecCCCCCCCCCCccChhhHHHHHHHHhHHHHHHHhccccccccCCchhHHHHhcchHHHHHhhhchhhhhhhc--
Confidence 6789999999 999999999999999555533 3444543333445666777777777788999999542
Q ss_pred CCCCCCChhhhHHHHHHHhhhhh---------ccCchhhhhhhhhHhhcCCCCC-h---hhHHHHHHHHHHHhCcccCCC
Q psy17158 598 KEDFKDDPESTINELFKFGLERL---------TFPPFGYLTDLWRWSVFNGSIP-E---DQYETAWWKLREEYQGVQPPM 664 (686)
Q Consensus 598 ~~~~~~~~e~~IN~Ll~~AL~kI---------~fLPf~~~~D~WRw~VF~g~i~-~---~~~N~~WW~Lr~kYQGI~pPv 664 (686)
.. ....+ .+....++.+ .++..-++...|...+++..-. . +++++.|.++.++|.|+..+.
T Consensus 298 ~~--~~~~~----~i~~~~l~~~~~~~~~~~~~~~~~ql~~a~fd~~~h~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 371 (458)
T PF01432_consen 298 RH--YETGE----PIPEELLEDLIASRNFFAAIFLFRQLLFALFDQELHESPEDGEPESEDLNELYRELQKEYYGDPSDP 371 (458)
T ss_dssp BS--TTTHH----HHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHCCHCCCTHHHHHHHHHHHHHHHHHCCTTTCBT
T ss_pred cC--hhhhh----hHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhccccCCccchhHHHHHHHHHHHhcCcchhc
Confidence 11 12222 2333333333 4777777888888999987332 2 478999999999999955543
No 14
>cd06460 M32_Taq Peptidase family M32 is a subclass of metallocarboxypeptidases which are distributed mainly in bacteria and archaea, and contain a HEXXH motif that coordinates a divalent cation such as Zn2+ or Co2+, so far only observed in the active site of neutral metallopeptidases but not in carboxypeptidases. M32 includes the thermostable carboxypeptidases (E.C. 3.4.17.19) from Thermus aquaticus (TaqCP) and Pyrococcus furiosus (PfuCP), which have broad specificities toward a wide range of C-terminal substrates that include basic, aromatic, neutral and polar amino acids. These enzymes have a similar fold to the M3 peptidases such as neurolysin and the M2 angiotensin converting enzyme (ACE). Novel peptidases from protozoa Trypanosoma cruzi, a causative agent of Chagas' disease, and Leishmania major, a parasite that causes leishmaniasis, are the first eukaryotic M32 enzymes identified so far, thus making these enzymes an attractive potential target for drug development against these o
Probab=99.51 E-value=3.1e-12 Score=140.42 Aligned_cols=267 Identities=19% Similarity=0.235 Sum_probs=187.6
Q ss_pred HHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHcCC-CChHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17158 341 KELAYYWQEFRNKTG-KLMRKKYAKYVQILNEGVRLSHY-KDAGDSWIALYNQPHFKETIEKLWTDIKPLYVELHAYVRR 418 (686)
Q Consensus 341 ~eLk~aW~aWr~~vg-~~~r~~y~~~V~L~N~aAr~nGf-~d~ge~Wr~~Ye~~~~~~~~e~lw~qIkPLY~qLHayVR~ 418 (686)
.+-..+|..-|++.. ..++|.+.++|+|..+.|...|+ .+..+.+...||...-.+.+++||.+|++....|.+-|..
T Consensus 11 ~~~~~~W~~ar~~~df~~f~p~L~~~v~l~re~a~~~~~~~~~YdaLLd~ye~g~~~~~id~~F~~lk~~l~~l~~~v~~ 90 (396)
T cd06460 11 SEAEQAWREARKKNDFALFAPYLEKIVELSREIAEYLGYEKHPYDALLDLYEPGMTTAKLDAIFAELKAGLVPLLKKVLE 90 (396)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456678888887766 67999999999999999999988 6677779999998878899999999999999998888755
Q ss_pred HHHHhhCCCccCCCCCcccccccccccccccccccccccCCCCCCCChhHHHHHccCcHHHHHHHHHHHHHhcCCCCCCh
Q psy17158 419 KLLAKYGPEVVFEKEPIPAHLLGNMWAQSWSNIYDITQPYPDIQEPDITKELQRQNYTVLKMFKKAEDFFLSLNMSKMTT 498 (686)
Q Consensus 419 kL~~~YG~~~v~~~gpIPAHLLGnmwaq~W~niyd~~~P~P~~~~~Dvt~~l~~q~yt~~~Mfk~Ae~FF~SLGL~~mp~ 498 (686)
+= ..|. ..+..+.++..+..+.+.+.-..+|++--
T Consensus 91 ~~-------------~~~~------------------------------~~~~~~~~~~~~Q~~~~~~~~~~~g~df~-- 125 (396)
T cd06460 91 KQ-------------KPPD------------------------------DSLLSGPFPEEKQEALGRELLEALGFDFD-- 125 (396)
T ss_pred cC-------------CCCC------------------------------ccccCCCCCHHHHHHHHHHHHHHhCCccc--
Confidence 21 0000 00012334555666778888888888751
Q ss_pred HHHhccccccCCC-CCcccccccccCCCCCceeEEecCcCC--cchHHHHHHHHHHHHHHHHh----cCCCCCCCCCCCc
Q psy17158 499 DFWENSVFVRPKD-RDIVCHGSAWDFHDGKTYRIKLCALVG--EDDLTTIHHEMGHIEYDMMY----SQQLPFYQTSPNP 571 (686)
Q Consensus 499 ~FW~~Sm~~kp~d-r~v~ChasAwDf~~~~D~RIkmCt~vt--~~Df~tvHHEmGHi~Y~~~Y----~~qP~~fR~gANp 571 (686)
.. -++..||.+..+. +.|+||.+....+ ..++.++.||+||+.|.++. ..+|+. .++.-
T Consensus 126 -----------~griD~s~hpF~~~~~-~~dvRItt~y~~~d~~~~l~t~iHE~GHalye~~l~~~~~~~pl~--~~~sm 191 (396)
T cd06460 126 -----------RGRLDVSAHPFTGGLG-PGDVRITTRYDENDFRSALFSTIHETGHALYEQGLPPELRGTPLG--GGASM 191 (396)
T ss_pred -----------CCeeecCCCCCCCCCC-CCCceEEeeeCCcchHHHHHHHHHHhhHHHHHhcCCHhHccCCcc--cCCCc
Confidence 12 2567788777776 4599999999888 88999999999999999964 678887 77899
Q ss_pred hhHhHHHHHHHHhhc-ChhHHHHh-CCCCCCCCCC-hhhhHHHHHHHhhhhhc-----------cCchhhh-hhhhhHhh
Q psy17158 572 GFHEAVGDTIVLSVK-THKHLKRI-GLLKEDFKDD-PESTINELFKFGLERLT-----------FPPFGYL-TDLWRWSV 636 (686)
Q Consensus 572 gFhEAIgd~iaLSv~-TP~hL~~i-GLl~~~~~~~-~e~~IN~Ll~~AL~kI~-----------fLPf~~~-~D~WRw~V 636 (686)
|+||+-+-+..+.+. +..+++.+ .++...|+.. ...+... +..++.+|. .-|+-.+ --++...+
T Consensus 192 ~ihESqS~f~E~~vgrs~~F~~~l~~~l~~~f~~~~~~~~~e~-~~~~~n~v~ps~iRveADEvty~lHiilR~e~Ek~l 270 (396)
T cd06460 192 GIHESQSRLWENQVGRSRAFWEFLYPKLKKTFPEQLKDVSLEN-FYRAVNRVQPSLIRVEADEVTYNLHIMLRYELEKAL 270 (396)
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcccccccCCHHH-HHHHHhhcCccceeeecchhhHHHHHHHHHHHHHHH
Confidence 999998887775543 33333321 1111111100 0001111 333344443 1233221 13444589
Q ss_pred cCCCCChhhHHHHHHHHHHHhCcccCCCCCC
Q psy17158 637 FNGSIPEDQYETAWWKLREEYQGVQPPMPRS 667 (686)
Q Consensus 637 F~g~i~~~~~N~~WW~Lr~kYQGI~pPv~R~ 667 (686)
++|+++.++.++.|++.-++|.||.||....
T Consensus 271 ~~G~l~v~dLp~~W~~~~~eylG~~~~~d~~ 301 (396)
T cd06460 271 IEGDLEVADLPEAWNEKMKEYLGIRPPNDAE 301 (396)
T ss_pred HcCCCCHHHHHHHHHHHHHHHcCCCCCCCcc
Confidence 9999999999999999999999999987744
No 15
>cd06455 M3A_TOP Peptidase M3 Thimet oligopeptidase (TOP; PZ-peptidase; endo-oligopeptidase A; endopeptidase 24.15; soluble metallo-endopeptidase; EC 3.4.24.15) family also includes neurolysin (endopeptidase 24.16, microsomal endopeptidase, mitochondrial oligopeptidase M, neurotensin endopeptidase, soluble angiotensin II-binding protein, thimet oligopeptidase II) which hydrolyzes oligopeptides such as neurotensin, bradykinin and dynorphin A. TOP and neurolysin are neuropeptidases expressed abundantly in the testis, but also found in the liver, lung and kidney. They are involved in the metabolism of neuropeptides under 20 amino acid residues long and cleave most bioactive peptides at the same sites, but recognize different positions on some naturally occurring and synthetic peptides; they cleave at distinct sites on the 13-residue bioactive peptide neurotensin, which modulates central dopaminergic and cholinergic circuits. TOP has been shown to degrade peptides released by the proteasom
Probab=99.33 E-value=1.1e-10 Score=130.95 Aligned_cols=305 Identities=18% Similarity=0.255 Sum_probs=179.6
Q ss_pred hhHHHHHhcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCChHHHHhhc-C--CcchHHHHHHHHHHH
Q psy17158 328 PTVINIMATSRDPKELAYYWQEFRNKTGKLMRKKYAKYVQILNEGVRLSHYKDAGDSWIAL-Y--NQPHFKETIEKLWTD 404 (686)
Q Consensus 328 pdL~~Ima~SrD~~eLk~aW~aWr~~vg~~~r~~y~~~V~L~N~aAr~nGf~d~ge~Wr~~-Y--e~~~~~~~~e~lw~q 404 (686)
|.+..+|..+.|.+.|+.+|+++...-....++.+.++|+++++.|+..||+++.++-... - ..+++.+.++.|.+.
T Consensus 22 ~~~~~~l~~~~d~~~Rk~~~~a~~~~~~~~n~~~l~~ll~~R~~~A~l~Gy~s~a~~~l~~~m~~s~e~v~~fl~~l~~~ 101 (472)
T cd06455 22 PDYFPVMKYAKNAETRKAMWVAFQNRGGPENVPLLEELVALRHELARLLGYKSHADYVLEDRMAKSPETVRDFLEDLSKK 101 (472)
T ss_pred ccHHHHHhcCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 7888999999999999999999886634678899999999999999999999999995422 1 245788899999999
Q ss_pred HHHHHH-HHHHHHHHHHHHhhCCCccCCCCCcccccccccccccccc--cccccccCCCCCCCChhHHHHHccCcHHHHH
Q psy17158 405 IKPLYV-ELHAYVRRKLLAKYGPEVVFEKEPIPAHLLGNMWAQSWSN--IYDITQPYPDIQEPDITKELQRQNYTVLKMF 481 (686)
Q Consensus 405 IkPLY~-qLHayVR~kL~~~YG~~~v~~~gpIPAHLLGnmwaq~W~n--iyd~~~P~P~~~~~Dvt~~l~~q~yt~~~Mf 481 (686)
++|+.+ +|+.+.+.+ ++..|.+. + .+ +.|.- ..+++. ....+++..-++..++-.+..
T Consensus 102 ~~p~~~~e~~~l~~~k-~~~~~~~~----~--------~l--~~wD~~y~~~~~~----~~~~~~~~~~~~~yf~~~~~~ 162 (472)
T cd06455 102 LKPLAEKELAELLELK-KKEVPEAG----D--------RI--YPWDLAYYMERVE----EEKYDVDQEKIREYFPLEVVI 162 (472)
T ss_pred HHHHHHHHHHHHHHHH-HHhcCCCC----C--------CC--CHhhHHHHHHHHH----HHhcCCCHHHHhccCcHHHHH
Confidence 999866 456655443 23345321 0 11 12322 222221 111233333334445554555
Q ss_pred HHHHHHHHh-cCCC--CCCh-HHHh----------c-----------cccccCCCCCcccccccccCCCC----------
Q psy17158 482 KKAEDFFLS-LNMS--KMTT-DFWE----------N-----------SVFVRPKDRDIVCHGSAWDFHDG---------- 526 (686)
Q Consensus 482 k~Ae~FF~S-LGL~--~mp~-~FW~----------~-----------Sm~~kp~dr~v~ChasAwDf~~~---------- 526 (686)
+..-+-|.. +|+. +.+. +-|. . -+++||+++++-|+.+ +..+
T Consensus 163 ~~i~~~~~~lfg~~~~~~~~~~~w~~dv~~~~v~d~~~~~~~g~~ylD~~~R~gK~~Ga~~~~---~~~~~~~~~g~~~~ 239 (472)
T cd06455 163 EGMLDIYQRLFGLRFEEVPDASVWHEDVRLYSVWDADTGEFLGYFYLDLHPREGKYGHAANFG---LQPGFLLPDGSRQY 239 (472)
T ss_pred HHHHHHHHHHhCeEEEeCCCCCCCCCcceEEEEEECCCCCEEEEEEeecCCCCCCCCCccccc---cccceecCCCCEeC
Confidence 554444554 4443 3332 2222 1 1348899865444432 2222
Q ss_pred CceeEEecCcCC---------cchHHHHHHHHHHHHHHHHhcCCCCCCCCCCCch--hHhHHHHHHHHhhcChhHHHHhC
Q psy17158 527 KTYRIKLCALVG---------EDDLTTIHHEMGHIEYDMMYSQQLPFYQTSPNPG--FHEAVGDTIVLSVKTHKHLKRIG 595 (686)
Q Consensus 527 ~D~RIkmCt~vt---------~~Df~tvHHEmGHi~Y~~~Y~~qP~~fR~gANpg--FhEAIgd~iaLSv~TP~hL~~iG 595 (686)
+-..|.|+...+ .+|+.|+.|||||+.-.+ +.+.......|.+.. |-|.=+-+.-+-+..|..|..+
T Consensus 240 P~~~i~~Nf~~~~~~~p~ll~~~~V~TLfHEfGHalH~~-ls~~~~~~~sg~~~~~d~aE~pS~~~E~~~~~~~~l~~l- 317 (472)
T cd06455 240 PVAALVCNFPKPTADKPSLLRHDEVETFFHEFGHVIHHL-LGRTKYARFSGTRVERDFVEAPSQMLENWCWEPEVLKRL- 317 (472)
T ss_pred CEEEEECcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-hcCCCccccCCCcCChhhhhcchHHHHHHhcCHHHHHHH-
Confidence 114688888777 699999999999994322 122222222555544 6666555555667888888854
Q ss_pred CCCCCCCCC---hhhhHHHHHH-----HhhhhhccCchhhhhhhhhHhhcCCCCChhhHHHHHHHHHHHhCcccC
Q psy17158 596 LLKEDFKDD---PESTINELFK-----FGLERLTFPPFGYLTDLWRWSVFNGSIPEDQYETAWWKLREEYQGVQP 662 (686)
Q Consensus 596 Ll~~~~~~~---~e~~IN~Ll~-----~AL~kI~fLPf~~~~D~WRw~VF~g~i~~~~~N~~WW~Lr~kYQGI~p 662 (686)
+... .+. .+..|+.++. .+++.+-.+-| -.+-..+++..-..++.++.|.++.++|.|+..
T Consensus 318 -~~h~-~t~e~i~~~li~~~~~~~~~~~~~~~~~q~~~----a~fd~~~h~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (472)
T cd06455 318 -SKHY-KTGEKIPDELIERLIASRHFNRGLFYLRQLFF----ALFDLALHTGDPADLDTTKLYNDLREEISLIPS 386 (472)
T ss_pred -hhcc-CCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHH----HHHHHHHhCCCCCCCCHHHHHHHHHHHhCCCCC
Confidence 2211 111 1223333222 22222222222 233356665421125799999999999999754
No 16
>PRK10911 oligopeptidase A; Provisional
Probab=99.32 E-value=6.2e-10 Score=130.16 Aligned_cols=364 Identities=13% Similarity=0.157 Sum_probs=209.7
Q ss_pred hhHhhHHhhhcc----ccCCCChHhHHHHHHHHHHHHHhhhcce------------eccC----CCC-----------CC
Q psy17158 269 LNMSKMTTDFWE----NSVFVRPKDRDIYSSVLSDMQKLFATAK------------LCPY----NAS-----------AS 317 (686)
Q Consensus 269 ~~~kRqL~~L~~----g~a~L~~e~~~el~~l~s~m~~iYstak------------vC~~----~~~-----------~~ 317 (686)
+..+|-++.+.. +-..|++++.+++.+|.+++..+-.... ++.. ... +.
T Consensus 124 ~e~~r~l~~~~~~F~~sG~~L~~~~r~~~~~i~~~l~~l~~~F~~n~~~~~~~~~~~~~~~~eL~Glp~~~~~~~~~~a~ 203 (680)
T PRK10911 124 TAQKKAVDNALRDFELSGIGLPKEKQQRYGEIAARLSELGNQYSNNVLDATMGWTKLITDEAELAGMPESALAAAKAQAE 203 (680)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccceeecCCHHHHCCCCHHHHHHHHHHHH
Confidence 677777765554 4456899999999888887666542221 1100 000 00
Q ss_pred C---CCCc-cCCChhhHHHHHhcCCCHHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHHHHHHHHcCCCChHHHH
Q psy17158 318 N---DTKC-NLDFDPTVINIMATSRDPKELAYYWQEFRNKTGK--------LMRKKYAKYVQILNEGVRLSHYKDAGDSW 385 (686)
Q Consensus 318 ~---~g~c-~l~LepdL~~Ima~SrD~~eLk~aW~aWr~~vg~--------~~r~~y~~~V~L~N~aAr~nGf~d~ge~W 385 (686)
. .|-+ ++. .|.+..+|..+.|.+.|+.+|+++...... .-.+++.++|+||++.|+++||+|+.+|-
T Consensus 204 ~~~~~g~~~tl~-~p~~~p~L~~~~drelRk~~y~A~~~r~~~~~~~~~~~dN~~il~eil~lR~e~AkLLGy~syAd~~ 282 (680)
T PRK10911 204 AKEQEGYLLTLD-IPSYLPVMTYCDNQALREEMYRAYSTRASDQGPNAGKWDNSEVMEEILALRHELAQLLGFENYADKS 282 (680)
T ss_pred hcCCCCeEEEee-cCcHHHHHhhCCCHHHHHHHHHHHHhhhhhccCcccccchHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 0 0111 133 378899999999999999999998755432 24799999999999999999999999994
Q ss_pred h---hcCCcchHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhCCCccCCCCCcccccccccccccccccccccccC
Q psy17158 386 I---ALYNQPHFKETIEKLWTDIKPLYV----ELHAYVRRKLLAKYGPEVVFEKEPIPAHLLGNMWAQSWSNIYDITQPY 458 (686)
Q Consensus 386 r---~~Ye~~~~~~~~e~lw~qIkPLY~----qLHayVR~kL~~~YG~~~v~~~gpIPAHLLGnmwaq~W~niyd~~~P~ 458 (686)
. ..+..+++.+.+++|+..++|+.+ +|+++.++.+ |.+.+. .-+|..+...+.
T Consensus 283 L~~kma~spe~V~~fL~~l~~~~~p~a~~El~~L~~~~k~~~----g~~~L~--------------pWD~~yy~~~~~-- 342 (680)
T PRK10911 283 LATKMAENPQQVLDFLTDLAKRARPQGEKELAQLRAFAKAEF----GVDELQ--------------PWDIAYYSEKQK-- 342 (680)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CCCCCC--------------hhhHHHHhhHHH--
Confidence 3 345568899999999999999876 5666655444 633221 123333333221
Q ss_pred CCCCCCChhHHHHHccC----cHHHHHHHHHHHHHhcCCCCCCh-HHHh-----------cc---------ccccCCCCC
Q psy17158 459 PDIQEPDITKELQRQNY----TVLKMFKKAEDFFLSLNMSKMTT-DFWE-----------NS---------VFVRPKDRD 513 (686)
Q Consensus 459 P~~~~~Dvt~~l~~q~y----t~~~Mfk~Ae~FF~SLGL~~mp~-~FW~-----------~S---------m~~kp~dr~ 513 (686)
...++++++-++.=+ ....||..+++-|- +-+.+.++ +-|. +. ++.|+++++
T Consensus 343 --~~~~~~d~~~l~~YFpl~~v~~gl~~~~~~Lfg-i~~~e~~~~~vwh~dV~~~~v~d~~~~~iG~~y~D~~~R~gK~~ 419 (680)
T PRK10911 343 --QHLYSISDEQLRPYFPENKAVNGLFEVVKRIYG-ITAKERKDVDVWHPDVRFFELYDENNELRGSFYLDLYARENKRG 419 (680)
T ss_pred --HhhcCCCHHHhcccCcHHHHHHHHHHHHHHHcC-eeEEecCCCCCCCCcceEEEEEeCCCCeEEEEEeeccCCCCCCC
Confidence 112333333222211 12468888888775 33443321 3343 11 237888864
Q ss_pred cccccccccC---CCC----CceeEEecCcC---------CcchHHHHHHHHHHHHHHHH-hcCCCCCCCCCCC---chh
Q psy17158 514 IVCHGSAWDF---HDG----KTYRIKLCALV---------GEDDLTTIHHEMGHIEYDMM-YSQQLPFYQTSPN---PGF 573 (686)
Q Consensus 514 v~ChasAwDf---~~~----~D~RIkmCt~v---------t~~Df~tvHHEmGHi~Y~~~-Y~~qP~~fR~gAN---pgF 573 (686)
+-+..+.-.- .++ +-+-|.+|... +.+|+.|+.|||||+.-.+- ....|.+ .|.+ --|
T Consensus 420 ga~~~~~~~~~~~~~g~~~~Pv~~l~~Nf~~p~~~~p~LL~~~~v~tlfHEfGHalH~~ls~~~~~~~--sGt~~~~~D~ 497 (680)
T PRK10911 420 GAWMDDCVGQMRKADGSLQKPVAYLTCNFNRPVNGKPALFTHDEVITLFHEFGHGLHHMLTRIETAGV--SGISGVPWDA 497 (680)
T ss_pred CccccccccccccCCCceeCCeEEEECCCCCCCCCCCcccCHHHHHHHHHHHhHHHHHHHhCCCcCcC--CCcCCCCchH
Confidence 4322111110 011 22346665554 55999999999999953332 2334444 5533 256
Q ss_pred HhHHHHHHHHhhcChhHHHHh--CCCCCCCCCChhhhHHHHHH-----HhhhhhccCchhhhhhhhhHhhcCCCC--Chh
Q psy17158 574 HEAVGDTIVLSVKTHKHLKRI--GLLKEDFKDDPESTINELFK-----FGLERLTFPPFGYLTDLWRWSVFNGSI--PED 644 (686)
Q Consensus 574 hEAIgd~iaLSv~TP~hL~~i--GLl~~~~~~~~e~~IN~Ll~-----~AL~kI~fLPf~~~~D~WRw~VF~g~i--~~~ 644 (686)
-|.=+.++-.-+..|.-|..+ ..... ....+..++.++. .++..+-.|-|+. +| ..+..... ...
T Consensus 498 vE~pS~~~E~~~~~~~vL~~~a~H~~tg--eplp~~l~~~l~~~~~~~~~~~~~rql~~a~-~D---~~~H~~~~~~~~~ 571 (680)
T PRK10911 498 VELPSQFMENWCWEPEALAFISGHYETG--EPLPKELLDKMLAAKNYQAALFILRQLEFGL-FD---FRLHAEFDPDQGA 571 (680)
T ss_pred hhccHHHHHHHhcCHHHHHHHHHHhcCC--CCCCHHHHHHHHHhhhhhhHHHHHHHHHHHH-HH---HHHhhcccccccc
Confidence 666666666667788888755 22222 2223344555443 4555555555554 34 33332211 112
Q ss_pred hHHHHHHHHHHHhCcccCCCC
Q psy17158 645 QYETAWWKLREEYQGVQPPMP 665 (686)
Q Consensus 645 ~~N~~WW~Lr~kYQGI~pPv~ 665 (686)
+..+.+=+++.++ |+.|+.+
T Consensus 572 ~~~~~~~~~~~~~-~~~~~~~ 591 (680)
T PRK10911 572 KILETLAEIKKQV-AVVPSPS 591 (680)
T ss_pred CHHHHHHHHHHHc-CCCCCCC
Confidence 4556666778887 5555544
No 17
>PRK10280 dipeptidyl carboxypeptidase II; Provisional
Probab=99.09 E-value=6.1e-09 Score=121.84 Aligned_cols=373 Identities=12% Similarity=0.123 Sum_probs=212.5
Q ss_pred hhHhhHHhhhcc----ccCCCChHhHHHHHHHHHHHHHhhhcce-----------eccCCC-------------------
Q psy17158 269 LNMSKMTTDFWE----NSVFVRPKDRDIYSSVLSDMQKLFATAK-----------LCPYNA------------------- 314 (686)
Q Consensus 269 ~~~kRqL~~L~~----g~a~L~~e~~~el~~l~s~m~~iYstak-----------vC~~~~------------------- 314 (686)
+..+|-++.+.. +-..|++++.+++.+|..++..+-.... +...+.
T Consensus 130 ~e~~r~l~~~l~dF~~sG~~L~~~~r~r~~~l~~~l~~L~~~F~~n~~~~~~~~~~~~~~~~eL~Glp~~~~~~~~~~a~ 209 (681)
T PRK10280 130 SESIRLVEVIHQRFVLAGAKLAQADKAKLKVLNTEAATLTSQFNQRLLAANKSGGLVVNDIHQLAGLSEQEIALAAEAAR 209 (681)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhcCeeecCCHHHHcCCCHHHHHHHHHHHH
Confidence 666777775554 4456899999999888888766542221 111000
Q ss_pred CCCCCCCccCCC-hhhHHHHHhcCCCHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHcCCCChHHHH---h
Q psy17158 315 SASNDTKCNLDF-DPTVINIMATSRDPKELAYYWQEFRNKTGK----LMRKKYAKYVQILNEGVRLSHYKDAGDSW---I 386 (686)
Q Consensus 315 ~~~~~g~c~l~L-epdL~~Ima~SrD~~eLk~aW~aWr~~vg~----~~r~~y~~~V~L~N~aAr~nGf~d~ge~W---r 386 (686)
....+|.-.++| .|....+|+.++|.+.|+.+|.++...... ...+++.++|+||++.|+++||+|+.+|- +
T Consensus 210 ~~g~~g~~~itl~~~~~~p~l~~~~dr~~Re~~~~A~~~r~~~~~~~dn~~il~~ll~lR~e~A~lLGf~~yA~~~l~~k 289 (681)
T PRK10280 210 EKGLDNRWLIPLLNTTQQPALAELRDRQTRENLFAAGWTRAEKGDANDTRAIIQRLVEIRAQQAKLLGFPHYAAWKIADQ 289 (681)
T ss_pred hcCCCCcEEEeCcCCcHhHHHhcCCCHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 000011111333 378999999999999999999998876543 68899999999999999999999999993 3
Q ss_pred hcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCCcccccccccccccccccccccccCCCCCCCCh
Q psy17158 387 ALYNQPHFKETIEKLWTDIKPLYVELHAYVRRKLLAKYGPEVVFEKEPIPAHLLGNMWAQSWSNIYDITQPYPDIQEPDI 466 (686)
Q Consensus 387 ~~Ye~~~~~~~~e~lw~qIkPLY~qLHayVR~kL~~~YG~~~v~~~gpIPAHLLGnmwaq~W~niyd~~~P~P~~~~~Dv 466 (686)
..+..+++.+.++.|+..++|..++=.+-++....+..|.+.+ ..=+|..+...+. ...+++
T Consensus 290 Ma~spe~V~~FL~~L~~~~~~~a~~E~~~L~~~~~~~~g~~~l--------------~pWD~~yy~ek~r----~~~~~~ 351 (681)
T PRK10280 290 MAKTPEAALNFMREIVPAARQRASDELASIQAVIDKQQGGFSA--------------QAWDWAFYAEQVR----REKYAL 351 (681)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--------------ChhHHHHHHHHHH----HHhcCC
Confidence 4577789999999999999998664333333323333453211 1224544444332 112333
Q ss_pred hHHHHHccC---cH--HHHHHHHHHHHHhcCCCCCCh-HHHh----------c----------cccccCCCCCccccccc
Q psy17158 467 TKELQRQNY---TV--LKMFKKAEDFFLSLNMSKMTT-DFWE----------N----------SVFVRPKDRDIVCHGSA 520 (686)
Q Consensus 467 t~~l~~q~y---t~--~~Mfk~Ae~FF~SLGL~~mp~-~FW~----------~----------Sm~~kp~dr~v~ChasA 520 (686)
+++.++.=+ ++ .-||..+++.| .|-|.+.+. .-|. . -++.||++++.-|..+.
T Consensus 352 d~~~l~~YFpl~~Vl~~Glf~l~~~Lf-Gi~f~~~~~~~vWh~dV~~~~V~d~~g~~lG~fY~Dl~~R~gK~~gawm~~~ 430 (681)
T PRK10280 352 DEAQLKPYFELNTVLNEGVFWTANQLF-GIKFVERFDIPVYHPDVRVWEIFDHNGVGLALFYGDFFARDSKSGGAWMGNF 430 (681)
T ss_pred CHHHcCCcCcHHHHHHHhHHHHHHHHc-CeEEEECCCCCCCCCCeeEEEEEcCCCCEEEEEEecCCCCCCCCCCCCCccc
Confidence 333322211 22 25788887766 233444332 3454 1 12478887644332111
Q ss_pred c---cCCCCCceeEEecCcC----------CcchHHHHHHHHHHHHHHHHhcCCCCCCCCCCC--chhHhHHHHHHHHhh
Q psy17158 521 W---DFHDGKTYRIKLCALV----------GEDDLTTIHHEMGHIEYDMMYSQQLPFYQTSPN--PGFHEAVGDTIVLSV 585 (686)
Q Consensus 521 w---Df~~~~D~RIkmCt~v----------t~~Df~tvHHEmGHi~Y~~~Y~~qP~~fR~gAN--pgFhEAIgd~iaLSv 585 (686)
- ......-+-+..|.-. +.+++.|+.|||||+-=-+- .+..+.=-.|.| --|-|.=+.++-.=+
T Consensus 431 ~~~~~~~~~~Pv~~lvcNf~~p~~~~p~LL~~~eV~TlFHEfGHalH~ll-s~~~y~~~sGt~v~~DfVE~PSq~mE~w~ 509 (681)
T PRK10280 431 VEQSTLNETRPVIYNVCNYQKPAAGQPALLLWDDVITLFHEFGHTLHGLF-ARQRYATLSGTNTPRDFVEFPSQINEHWA 509 (681)
T ss_pred ccccccCCCCCeEEEECCCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHH-hCCCccccCCCCCCcchhcCcHHHHHHHh
Confidence 1 0001112334455321 66799999999999944332 333322114432 245555556666668
Q ss_pred cChhHHHHhCCC-CCCCCCChhhhHHHH-----HHHhhhhhccCchhhhhhhhhHhhcCCCCChhhHHHHHHHHHHHhCc
Q psy17158 586 KTHKHLKRIGLL-KEDFKDDPESTINEL-----FKFGLERLTFPPFGYLTDLWRWSVFNGSIPEDQYETAWWKLREEYQG 659 (686)
Q Consensus 586 ~TP~hL~~iGLl-~~~~~~~~e~~IN~L-----l~~AL~kI~fLPf~~~~D~WRw~VF~g~i~~~~~N~~WW~Lr~kYQG 659 (686)
..|.-|+.+.-- .+. ..-.+..|+.| +..|++.+-.|-|++ +|+-=+.-.... ...+....+++.+.++ |
T Consensus 510 ~~~~vL~~~a~Hy~Tg-epiP~~l~~~l~~ar~~~~g~~~~~ql~~al-~D~~lH~~~~~~-~~~~~~~~~~~~~~~~-~ 585 (681)
T PRK10280 510 SHPQVFARYARHYQSG-EAMPDELQEKMRNASLFNKGYDMSELLSAAL-LDMRWHCLEENE-AMQDVDDFELRALVAE-N 585 (681)
T ss_pred cCHHHHHHHhhccCCC-CCCCHHHHHHHHHhhCcchHHHHHHHHHHHH-HhHHHhccCccc-ccccHHHHHHHHHHHh-C
Confidence 889999865321 221 12223345554 445677777777765 453333221111 1234566666777776 5
Q ss_pred c-cCCCC
Q psy17158 660 V-QPPMP 665 (686)
Q Consensus 660 I-~pPv~ 665 (686)
+ .||++
T Consensus 586 ~~~~~~~ 592 (681)
T PRK10280 586 LDLPAVP 592 (681)
T ss_pred CCCCCCC
Confidence 5 44444
No 18
>cd06457 M3A_MIP Peptidase M3 mitochondrial intermediate peptidase (MIP; EC 3.4.24.59) belongs to the widespread subfamily M3A, that show similarity to the Thimet oligopeptidase (TOP). It is one of three peptidases responsible for the proteolytic processing of both, nuclear and mitochondrial encoded precursor polypeptides targeted to the various subcompartments of the mitochondria. It cleaves intermediate-size proteins initially processed by mitochondrial processing peptidase (MPP) to yield a processing intermediate with a typical N-terminal octapeptide that is sequentially cleaved by MIP to mature-size protein. MIP cleaves precursor proteins of respiratory components, including subunits of the electron transport chain and tri-carboxylic acid cycle enzymes, and components of the mitochondrial genetic machinery, including ribosomal proteins, translation factors, and proteins required for mitochondrial DNA metabolism. It has been suggested that the human MIP (HMIP polypeptide; gene symbo
Probab=98.99 E-value=1e-07 Score=107.03 Aligned_cols=307 Identities=13% Similarity=0.117 Sum_probs=175.1
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCChHHHHhhc--C-CcchHHHHHHHHHHHHHHHH
Q psy17158 333 IMATSRDPKELAYYWQEFRNKTGKLMRKKYAKYVQILNEGVRLSHYKDAGDSWIAL--Y-NQPHFKETIEKLWTDIKPLY 409 (686)
Q Consensus 333 Ima~SrD~~eLk~aW~aWr~~vg~~~r~~y~~~V~L~N~aAr~nGf~d~ge~Wr~~--Y-e~~~~~~~~e~lw~qIkPLY 409 (686)
||+.+.|.+.|+.+|.++... +....+++.++|++|++.|+++||+|+.+|-... - ..++..+.+++|++.++|+.
T Consensus 2 ~l~~~~d~~~Rk~a~~a~~~~-~~~n~~il~~l~~lR~e~A~llGy~sya~~~l~~~ma~spe~v~~fL~~l~~~~~p~~ 80 (458)
T cd06457 2 LLASVPNESVRELVYRAFHSS-SAEQLELLEELLSSRAELAQLLGFESYAHRALRGKMAKNPENVMEFLTELSEKLRPRA 80 (458)
T ss_pred ccccCCCHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999998765 6778899999999999999999999999994321 1 24678899999999999987
Q ss_pred HHHHHHHHHHHHHhhCCCccCCCCCcccccccccccccccccccccccCCCCCCCChhHHHHHccC----cHHHHHHHHH
Q psy17158 410 VELHAYVRRKLLAKYGPEVVFEKEPIPAHLLGNMWAQSWSNIYDITQPYPDIQEPDITKELQRQNY----TVLKMFKKAE 485 (686)
Q Consensus 410 ~qLHayVR~kL~~~YG~~~v~~~gpIPAHLLGnmwaq~W~niyd~~~P~P~~~~~Dvt~~l~~q~y----t~~~Mfk~Ae 485 (686)
++=..-+++...+..|. .. ..+-.-+|..+...+.- ...+++++.++.=+ ..+-||..++
T Consensus 81 ~~e~~~L~~~~~~~~~~---~~---------~~L~pwD~~yy~~~~~~----~~~~~d~~~l~~YFpl~~vl~gl~~~~~ 144 (458)
T cd06457 81 EEELAVLRDMKRKVLGK---PL---------SSLAPWDRDYYTGQYRQ----SRFDSEPSNLSPYFSLGTVMEGLSRLFS 144 (458)
T ss_pred HHHHHHHHHHHHHhcCC---Cc---------CCCCHHHHHHHHHHHHH----hhcCCChHHhcccCcHHHHHHHHHHHHH
Confidence 77655555555444441 00 01222344333333210 01122222221111 3356888888
Q ss_pred HHHHhcCCCCCCh---HHHhcc--------------------ccccCCCCCcccccccccCCCC------------Cc--
Q psy17158 486 DFFLSLNMSKMTT---DFWENS--------------------VFVRPKDRDIVCHGSAWDFHDG------------KT-- 528 (686)
Q Consensus 486 ~FF~SLGL~~mp~---~FW~~S--------------------m~~kp~dr~v~ChasAwDf~~~------------~D-- 528 (686)
+.| .|-|.+.+. +-|..+ ++.||++++.-||-+.-.-+.. +.
T Consensus 145 ~lf-gi~~~~~~~~~~~~Wh~dV~~~~v~d~~~~~lG~~YlDl~~R~~K~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~q 223 (458)
T cd06457 145 RLY-GIRLVPVPLAPGEVWHPDVRKLDVVHEDEGLLGVIYCDLFSRPGKPPGAAHFTIRCSRRLDDDDVAERGGRGGTYQ 223 (458)
T ss_pred HHh-CeEEEecCCCCCCCcCccceEEEEEeCCCCEEEEEEeecCCCCCCCCCcceeccccccccCcccccccccCCCcee
Confidence 877 344555432 456522 2478888776666432211111 11
Q ss_pred --eeEEecC-c---------CCcchHHHHHHHHHHHHHHHHhcCCCCCCCCCCC--chhHhHHHHHHHHhhcChhHHHHh
Q psy17158 529 --YRIKLCA-L---------VGEDDLTTIHHEMGHIEYDMMYSQQLPFYQTSPN--PGFHEAVGDTIVLSVKTHKHLKRI 594 (686)
Q Consensus 529 --~RIkmCt-~---------vt~~Df~tvHHEmGHi~Y~~~Y~~qP~~fR~gAN--pgFhEAIgd~iaLSv~TP~hL~~i 594 (686)
+-...|. . .+.+|+.|+.|||||+.-.+- ....+..-.|.+ ..|-|.-+-++-.-+..|.-|..+
T Consensus 224 ~Pv~~lvcnf~~p~~~~p~lL~~~~v~TLfHEfGHalH~~l-s~~~~~~~sgt~~~~d~vE~pS~~~E~~~~~~~~L~~~ 302 (458)
T cd06457 224 LPVVALMCNFPPPSPSGPTLLSPHEVETLFHEMGHAMHSML-GRTEYQHVSGTRCATDFVEVPSILMEYFASDPRVLKLF 302 (458)
T ss_pred CCeEEEECCCCCCCCCCCCCcCHHHHHHHHHHHhHHHHHHH-cCCCccccCCCCCCcchhhcCHHHHHHHHhhHHHHHHH
Confidence 1233342 1 256799999999999954433 222222224543 245555555555557778888754
Q ss_pred CCC-CCCCCCChhhhHHHHHH-----HhhhhhccCchhhhhhhhhHhhcCCC-CChhhHHHHHHHHHHHhCcccCC
Q psy17158 595 GLL-KEDFKDDPESTINELFK-----FGLERLTFPPFGYLTDLWRWSVFNGS-IPEDQYETAWWKLREEYQGVQPP 663 (686)
Q Consensus 595 GLl-~~~~~~~~e~~IN~Ll~-----~AL~kI~fLPf~~~~D~WRw~VF~g~-i~~~~~N~~WW~Lr~kYQGI~pP 663 (686)
.-= .+. ..-.+..++.++. .|+..+-.+-|+ .+-..+++.. .......+.|-++.++|.|+..+
T Consensus 303 a~h~~t~-e~ip~~l~~~l~~~~~~~~~~~~~rq~~~a----~fD~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (458)
T cd06457 303 ARHYSTG-EPLPEEMLARLLASKNSFAALETQQQIVYA----LLDQELHGEQPLSPTFTSDVLRDSTEIFYGLPYV 373 (458)
T ss_pred hcccCCC-CcCcHHHHHHHHHhhhhhHHHHHHHHHHHH----HHHHHHhCCCcccccCHHHHHHHHHHHhcCCCCC
Confidence 321 111 1111233444433 223333333232 2224455331 11223458899999999997543
No 19
>PF02074 Peptidase_M32: Carboxypeptidase Taq (M32) metallopeptidase; InterPro: IPR001333 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M32 (carboxypeptidase Taq family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. Carboxypeptidase Taq is a zinc-containing thermostable metallopeptidase. It was originally discovered and purified from Thermus aquaticus; optimal enzymatic activity occurs at 80 celcius. Although very little is known about this enzyme, it is thought either to be associated with a membrane or to be particle bound.; GO: 0004181 metallocarboxypeptidase activity, 0006508 proteolysis; PDB: 1K9X_A 1KA4_A 1KA2_A 3DWC_A 1WGZ_A 3HQ2_A 3HOA_B.
Probab=98.90 E-value=8.2e-08 Score=108.51 Aligned_cols=317 Identities=18% Similarity=0.221 Sum_probs=172.9
Q ss_pred hhHhhHHhhhccccCCCChHhHHHHHHHHHHHHHhhhcceeccCCCCCCCCCCccCCChhhHHHHHhcCCCHHHHHHHHH
Q psy17158 269 LNMSKMTTDFWENSVFVRPKDRDIYSSVLSDMQKLFATAKLCPYNASASNDTKCNLDFDPTVINIMATSRDPKELAYYWQ 348 (686)
Q Consensus 269 ~~~kRqL~~L~~g~a~L~~e~~~el~~l~s~m~~iYstakvC~~~~~~~~~g~c~l~LepdL~~Ima~SrD~~eLk~aW~ 348 (686)
+.++..|+.+......|++.+...+. .|.+.|-.++ | +. +|+..-++.- -.+=..+|+
T Consensus 61 ~~~~elL~~l~~~~~~l~~~e~a~lr----~~~r~~~~~~-------------~-iP--~elv~~~~~~--~s~a~~~W~ 118 (494)
T PF02074_consen 61 PEIGELLEELEEEKEDLDEWERANLR----EMRRDYERAT-------------K-IP--EELVEELARL--TSEAEQAWE 118 (494)
T ss_dssp HHHHHHHHHHHCSGSSTTHHHHHHHH----HHHHHHHHHH-------------C-S---HHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHH----HHHHHHHHHh-------------C-CC--HHHHHHHHHH--HHHHHHHHH
Confidence 66666666555533456665555444 4444442221 2 22 3443333221 133345666
Q ss_pred HHHHHHh-hHHHHHHHHHHHHHHHHHHHcCCC-ChHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q psy17158 349 EFRNKTG-KLMRKKYAKYVQILNEGVRLSHYK-DAGDSWIALYNQPHFKETIEKLWTDIKPLYVELHAYVRRKLLAKYGP 426 (686)
Q Consensus 349 aWr~~vg-~~~r~~y~~~V~L~N~aAr~nGf~-d~ge~Wr~~Ye~~~~~~~~e~lw~qIkPLY~qLHayVR~kL~~~YG~ 426 (686)
.=|++.. ..+.|.+.++|+|..+.|...|+. +..|.+...||..--.+.++.+|.+|++.-..|-.-|..+ |.
T Consensus 119 ~AR~~nDf~~F~P~Le~iv~l~re~a~~~~~~~~~YDaLLd~yEpg~t~~~ld~~F~~lk~~l~~l~~~i~~~-----~~ 193 (494)
T PF02074_consen 119 EARENNDFSAFAPYLEKIVELQREIAEYLGYELSPYDALLDDYEPGMTTEKLDEIFAELKAFLVPLLQKILEK-----QK 193 (494)
T ss_dssp HHHHCT-HHHHHHHHHHHHHHHHHHHHHCTSTTSHHHHHHHHHSTT--HHHHHHHHHHHHHHHHHHHHHHHCH-----TC
T ss_pred HHHhhCCHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc-----CC
Confidence 6443322 358999999999999999999976 5777799999987677888888888887655554443332 10
Q ss_pred CccCCCCCcccccccccccccccccccccccCCCCCCCChhHHHHHccCcHHHHHHHHHHHHHhcCCCCCChHHHhcccc
Q psy17158 427 EVVFEKEPIPAHLLGNMWAQSWSNIYDITQPYPDIQEPDITKELQRQNYTVLKMFKKAEDFFLSLNMSKMTTDFWENSVF 506 (686)
Q Consensus 427 ~~v~~~gpIPAHLLGnmwaq~W~niyd~~~P~P~~~~~Dvt~~l~~q~yt~~~Mfk~Ae~FF~SLGL~~mp~~FW~~Sm~ 506 (686)
.+ . ...+-.+ +...+.-+.+...-..||++.- +..
T Consensus 194 --~~-----~--------------~~~l~~~-----------------~~~~~Q~~~~~~~~~~~G~d~~------~gr- 228 (494)
T PF02074_consen 194 --QP-----D--------------DSFLHGP-----------------FPEEKQKAFSRELLEYLGFDFD------RGR- 228 (494)
T ss_dssp --CH-----T--------------GGGGGSB-------------------HHHHHHHHHHHHHHHT--GC------GEE-
T ss_pred --CC-----C--------------CccCCCC-----------------CCHHHHHHHHHHHHHHcCCCcc------ceE-
Confidence 00 0 0011112 2334455677777888999852 111
Q ss_pred ccCCCCCcccccccccCCCCCceeEEecCcCC--cchHHHHHHHHHHHHHHHH----hcCCCCCCCCCCCchhHhHHHHH
Q psy17158 507 VRPKDRDIVCHGSAWDFHDGKTYRIKLCALVG--EDDLTTIHHEMGHIEYDMM----YSQQLPFYQTSPNPGFHEAVGDT 580 (686)
Q Consensus 507 ~kp~dr~v~ChasAwDf~~~~D~RIkmCt~vt--~~Df~tvHHEmGHi~Y~~~----Y~~qP~~fR~gANpgFhEAIgd~ 580 (686)
-++.-||..--+. ..|+||-.-...+ ..-+..+.||+||.-|-++ +..+|+- .|+.-|+||+=+-+
T Consensus 229 -----ld~s~HPFt~~~~-~~DvRiTTry~e~d~~~~l~s~iHE~GHalYEq~~~~~~~~tpl~--~~~smgiHESQSrf 300 (494)
T PF02074_consen 229 -----LDESAHPFTTGFG-PNDVRITTRYDEDDFLSALFSTIHETGHALYEQGLPPEYYGTPLG--EGVSMGIHESQSRF 300 (494)
T ss_dssp -----EEE-SS-EEEEEE-TTEEEEEE--BTTBTHHHHHHHHHHHHHHHHHHTS-GGGTTSTTS--S-S-HHHHHHHHHH
T ss_pred -----EecCCCCCCCCCC-CCceeeecccccccHHHHHHHHHHHHHHHHHHcCCChhHccCccc--cccccchHHHHHHH
Confidence 2345566654444 5699987665443 2345677899999999985 5778888 99999999998877
Q ss_pred HHHh-hcChhHHHHh-----CCCCCCCCC-Chhh---hHHH----HHHHhhhhhccCchhhhh-hhhhHhhcCCCCChhh
Q psy17158 581 IVLS-VKTHKHLKRI-----GLLKEDFKD-DPES---TINE----LFKFGLERLTFPPFGYLT-DLWRWSVFNGSIPEDQ 645 (686)
Q Consensus 581 iaLS-v~TP~hL~~i-----GLl~~~~~~-~~e~---~IN~----Ll~~AL~kI~fLPf~~~~-D~WRw~VF~g~i~~~~ 645 (686)
.--. -.+..+.+.+ ..+... .+ +.+. .+|. +.+.--|-|.. |+-.++ -+=.-.+|+|+++.++
T Consensus 301 ~En~vgrS~~Fw~~~~p~l~~~f~~~-~~v~~e~~y~~~N~V~ps~IR~eADElTY-~lHIilRyEiEk~li~g~l~v~d 378 (494)
T PF02074_consen 301 WENMVGRSRAFWEFLYPKLQEHFPQL-KDVSLENFYRAINRVKPSLIRVEADELTY-PLHIILRYEIEKALINGELSVDD 378 (494)
T ss_dssp HHTTTTTSHHHHHHHHHHHHHHCGGG-TT-SHHHHHHHHT-----S-GGG--TTTH-HHHHHHHHHHHHHHHTTSS-GGG
T ss_pred HHHHHccCHHHHHHHHHHHHHHhCcc-cCCCHHHHHHHHccCCCcccchhhHHHHH-HHHHHHHHHHHHHHHcCCCChhh
Confidence 6543 2233322211 111110 11 1110 1111 22222222221 111111 1122468999999999
Q ss_pred HHHHHHHHHHHhCcccCCCCCC
Q psy17158 646 YETAWWKLREEYQGVQPPMPRS 667 (686)
Q Consensus 646 ~N~~WW~Lr~kYQGI~pPv~R~ 667 (686)
+-+.|-+.-++|-||.||....
T Consensus 379 LP~~Wn~km~eyLGi~p~~d~e 400 (494)
T PF02074_consen 379 LPEAWNEKMEEYLGITPPNDAE 400 (494)
T ss_dssp HHHHHHHHHHHHHS---SSCTT
T ss_pred hHHHHHHHHHHHcCCCCCCCCc
Confidence 9999999999999999986543
No 20
>cd06456 M3A_DCP_Oligopeptidase_A Peptidase family M3 dipeptidyl carboxypeptidase (DCP; Dcp II; peptidyl dipeptidase; EC 3.4.15.5). This metal-binding M3A family also includes oligopeptidase A (OpdA; EC 3.4.24.70) enzyme. DCP cleaves dipeptides off the C-termini of various peptides and proteins, the smallest substrate being N-blocked tripeptides and unblocked tetrapeptides. DCP from E. coli is inhibited by the anti-hypertensive drug captopril, an inhibitor of the mammalian angiotensin converting enzyme (ACE, also called peptidyl dipeptidase A). Oligopeptidase A (OpdA) may play a specific role in the degradation of signal peptides after they are released from precursor forms of secreted proteins. It can also cleave N-acetyl-L-Ala.
Probab=98.75 E-value=6.4e-07 Score=99.77 Aligned_cols=288 Identities=17% Similarity=0.186 Sum_probs=156.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCChHHHHh---hcCCcchHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhCCCccCC
Q psy17158 359 RKKYAKYVQILNEGVRLSHYKDAGDSWI---ALYNQPHFKETIEKLWTDIKPLYVE----LHAYVRRKLLAKYGPEVVFE 431 (686)
Q Consensus 359 r~~y~~~V~L~N~aAr~nGf~d~ge~Wr---~~Ye~~~~~~~~e~lw~qIkPLY~q----LHayVR~kL~~~YG~~~v~~ 431 (686)
.+++.++|+||++.|+.+||+|+.+|-. ..-..+++.+.+++|++.++|+.++ |.++.++.+ |.+.
T Consensus 3 ~~~l~~l~~lR~e~A~llG~~s~a~~~l~~~ma~sp~~v~~Fl~~l~~~~~p~~~~e~~~L~~~~~~~~----~~~~--- 75 (422)
T cd06456 3 RPLIEEILALRAEKAKLLGFENYAEYSLADKMAKSPEAVLEFLEDLAPKAKPQAKKELAELQAFAKEEG----GEDE--- 75 (422)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCC---
Confidence 4678999999999999999999999932 2224578999999999999998777 666666543 3221
Q ss_pred CCCcccccccccccccccccccccccCCCCCCCChhHHHHHccC----cHHHHHHHHHHHHHhcCCCCCCh-HHHhcc--
Q psy17158 432 KEPIPAHLLGNMWAQSWSNIYDITQPYPDIQEPDITKELQRQNY----TVLKMFKKAEDFFLSLNMSKMTT-DFWENS-- 504 (686)
Q Consensus 432 ~gpIPAHLLGnmwaq~W~niyd~~~P~P~~~~~Dvt~~l~~q~y----t~~~Mfk~Ae~FF~SLGL~~mp~-~FW~~S-- 504 (686)
+..-+|..+...... ...+++++-++.=+ ..+.||..+++.|-- -|.+.+. +-|..+
T Consensus 76 -----------l~~wD~~yy~~~~~~----~~~~~d~~~l~~YFpl~~v~~gl~~~~~~lfgi-~~~~~~~~~~Wh~dV~ 139 (422)
T cd06456 76 -----------LEPWDWAYYSEKLRK----EKYDLDEEELRPYFPLEKVLDGLFELAERLYGI-TFKERTDLPVWHPDVR 139 (422)
T ss_pred -----------CCHHHHHHHHHHHHH----HhcCCCHHHHhccCCHHHHHHHHHHHHHHHcCe-eEEECCCCCCCCCCce
Confidence 222223222221100 01111111111111 224678888877632 3345444 445321
Q ss_pred ------------------ccccCCCCCc-ccccccccCCC----CCceeEEecCcC---------CcchHHHHHHHHHHH
Q psy17158 505 ------------------VFVRPKDRDI-VCHGSAWDFHD----GKTYRIKLCALV---------GEDDLTTIHHEMGHI 552 (686)
Q Consensus 505 ------------------m~~kp~dr~v-~ChasAwDf~~----~~D~RIkmCt~v---------t~~Df~tvHHEmGHi 552 (686)
++.||+++.. .|++..-...+ .+-+.|.++... +.+|+.|+.||+||+
T Consensus 140 ~~~v~d~~~~~lG~~ylDl~~R~~K~~ga~~~~~~~~~~~~~~~~P~~~l~~nf~~~~~~~p~lL~~~~v~tLfHEfGHa 219 (422)
T cd06456 140 VYEVFDKDGSHIGLFYLDLYAREGKRGGAWMNNLRSQSKNGLGQKPVAYLVCNFTKPAGGKPALLTHDEVTTLFHEFGHA 219 (422)
T ss_pred EEEEEeCCCCeEEEEEEeccCCCCCCCCceeecccccccCCCCCCCEEEEECCCCCCCCCCCCccCHHHHHHHHHHHHHH
Confidence 2377888544 44432111100 122345555555 899999999999999
Q ss_pred HHHH-HhcCCCCCCCCCCCch--hHhHHHHHHHHhhcChhHHHHhCCC-CCCCCCChhhhHHHHHH-----HhhhhhccC
Q psy17158 553 EYDM-MYSQQLPFYQTSPNPG--FHEAVGDTIVLSVKTHKHLKRIGLL-KEDFKDDPESTINELFK-----FGLERLTFP 623 (686)
Q Consensus 553 ~Y~~-~Y~~qP~~fR~gANpg--FhEAIgd~iaLSv~TP~hL~~iGLl-~~~~~~~~e~~IN~Ll~-----~AL~kI~fL 623 (686)
.=.+ ....++.+ .+.+.. |-|.=+.++-.-+..|.-|+.+.-= .+. ..-.+..++.+.. .|+..+-.|
T Consensus 220 lH~~ls~~~~~~l--~~~~~~~d~~E~pS~~~E~~~~d~~vL~~~s~h~~t~-~~lp~~l~~~~~~~~~~~~~~~~~~ql 296 (422)
T cd06456 220 LHHLLTDVEYPSL--GGTNVEWDFVELPSQFMENWAWEPEVLKLFAKHYETG-EPLPDELIDKLLAARNFNSGFATVRQL 296 (422)
T ss_pred HHHHHhcCCcccc--CCCcCchhHhhccHHHHHHHhcCHHHHHHHHhhcCCC-CCCCHHHHHHHHHHhhHhHHHHHHHHH
Confidence 4322 22344433 555544 5455455555557889888865321 111 1122233444333 233333333
Q ss_pred chhhhhhhhhHhhcCCCC--ChhhHHHHHHHHHHHhCcccCCCCCCCCCCCccCccccc
Q psy17158 624 PFGYLTDLWRWSVFNGSI--PEDQYETAWWKLREEYQGVQPPMPRSEDDFDPGSKYHIP 680 (686)
Q Consensus 624 Pf~~~~D~WRw~VF~g~i--~~~~~N~~WW~Lr~kYQGI~pPv~R~e~dFDpgAKyHI~ 680 (686)
-+ -+.| ..+++... +.+.....|-++++++.|+.++. .+.-+++.-||-
T Consensus 297 ~~-a~fD---~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~f~Hi~ 347 (422)
T cd06456 297 EF-ALLD---LALHSLTDPEILDVVQFELDALRKEGLVIPPPP----PRYFSNYFSHIF 347 (422)
T ss_pred HH-HHHH---HHHhcCCcccccchHHHHHHHHHHhcCCCCCCC----CCCCCCccCcCC
Confidence 22 2345 55554422 23567777778888777665322 223445666775
No 21
>COG2317 Zn-dependent carboxypeptidase [Amino acid transport and metabolism]
Probab=98.70 E-value=5.3e-05 Score=84.37 Aligned_cols=251 Identities=18% Similarity=0.201 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCC-hHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCCc
Q psy17158 357 LMRKKYAKYVQILNEGVRLSHYKD-AGDSWIALYNQPHFKETIEKLWTDIKPLYVELHAYVRRKLLAKYGPEVVFEKEPI 435 (686)
Q Consensus 357 ~~r~~y~~~V~L~N~aAr~nGf~d-~ge~Wr~~Ye~~~~~~~~e~lw~qIkPLY~qLHayVR~kL~~~YG~~~v~~~gpI 435 (686)
-++|..++.|+|.-+.|...|+.. ..+.-...||.....++++++|.+|+|--..|-.-|..+ | ..+...
T Consensus 127 ~F~p~Lekiv~l~re~A~~~~~~~~pYdaLld~yEpG~t~~~i~~vF~~Lk~~L~~ll~kv~~~-----~--~~~~~~-- 197 (497)
T COG2317 127 IFKPYLEKIVELKREFAEYRGYEEHPYDALLDLYEPGLTVRDVDRVFAELKKELVPLLDKVLEK-----G--KSPRSD-- 197 (497)
T ss_pred hhhHHHHHHHHHHHHHHHhcccccCcHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhc-----c--CCCccc--
Confidence 488889999999999999999875 333467788887777889999988887555443333321 1 011100
Q ss_pred ccccccccccccccccccccccCCCCCCCChhHHHHHccCcHHHHHHHHHHHHHhcCCCCCChHHHhccccccCCC-CCc
Q psy17158 436 PAHLLGNMWAQSWSNIYDITQPYPDIQEPDITKELQRQNYTVLKMFKKAEDFFLSLNMSKMTTDFWENSVFVRPKD-RDI 514 (686)
Q Consensus 436 PAHLLGnmwaq~W~niyd~~~P~P~~~~~Dvt~~l~~q~yt~~~Mfk~Ae~FF~SLGL~~mp~~FW~~Sm~~kp~d-r~v 514 (686)
-+.+-.|...+|.+.+.....-||++-- .. -++
T Consensus 198 ---------------------------------~~~~~~~~~e~q~~~~~~vl~~lGfdf~-------------~GRlD~ 231 (497)
T COG2317 198 ---------------------------------LLEKEKYDKEKQEALGLRVLELLGFDFE-------------RGRLDV 231 (497)
T ss_pred ---------------------------------ccccCCCCHHHHHHHHHHHHHHhCCCcc-------------CccccC
Confidence 0111245677888999999999999842 23 377
Q ss_pred ccccccccCCCCCceeEEecCcCCcchH----HHHHHHHHHHHHHHH----hcCCCCCCCCCCCchhHhHHHHHHHHh-h
Q psy17158 515 VCHGSAWDFHDGKTYRIKLCALVGEDDL----TTIHHEMGHIEYDMM----YSQQLPFYQTSPNPGFHEAVGDTIVLS-V 585 (686)
Q Consensus 515 ~ChasAwDf~~~~D~RIkmCt~vt~~Df----~tvHHEmGHi~Y~~~----Y~~qP~~fR~gANpgFhEAIgd~iaLS-v 585 (686)
.-||.+--+- ..|+||..- .+..|| ..+-||.||+-|-++ +..+|+- +|+.-|+||+=.-+.-.- -
T Consensus 232 S~HPF~~g~~-~~DVRITTR--y~~~df~~aL~g~iHE~GHAlYEqn~~~~l~gtPlg--~g~smgiHESQSrF~En~VG 306 (497)
T COG2317 232 SVHPFTTGLP-INDVRITTR--YNEQDFRSALFGTIHETGHALYEQNLDEALLGTPLG--EGRSMGIHESQSRFWENQVG 306 (497)
T ss_pred CCCCccCCCC-CCceeEEee--cCCccHHHHHHHHHHhhhhHHHHcCCCHHHcCCccc--CCcccccccHHHHHHHHHhc
Confidence 8888877775 579999754 455565 556899999999986 4678988 999999999966554433 2
Q ss_pred cChhHHHHh-CCCCCCC----CCChhhhHHHHHHHhhhhh-------ccCchhhhh-hhhhHhhcCCCCChhhHHHHHHH
Q psy17158 586 KTHKHLKRI-GLLKEDF----KDDPESTINELFKFGLERL-------TFPPFGYLT-DLWRWSVFNGSIPEDQYETAWWK 652 (686)
Q Consensus 586 ~TP~hL~~i-GLl~~~~----~~~~e~~IN~Ll~~AL~kI-------~fLPf~~~~-D~WRw~VF~g~i~~~~~N~~WW~ 652 (686)
.++.+.+.+ .++...| ..-...++-+...+.-..+ ..-|+-.++ -+=.-.+++|++.-++.-+.|=+
T Consensus 307 Rs~aFw~~~~~~~~~~~~~~~~~~s~dd~y~~vn~v~~~lIRveADElTY~lHIilRyEiEk~li~G~l~v~DlP~lWn~ 386 (497)
T COG2317 307 RSRAFWEAIYPLLRKHFPEQFDKYSLDDFYRAVNRVEPSLIRVEADELTYPLHIILRYEIEKELISGELKVDDLPELWND 386 (497)
T ss_pred cCHHHHHHHHHHHHHhhhhhcccCCHHHHHHHHhcccCcceeeeccccceeeeeehhHHHHHHHHcCCcchhhhHHHHHH
Confidence 344444433 2222111 1111223333332221111 111222221 11125689999999999999999
Q ss_pred HHHHhCcccCCCCCC
Q psy17158 653 LREEYQGVQPPMPRS 667 (686)
Q Consensus 653 Lr~kYQGI~pPv~R~ 667 (686)
..++|-||.|+..+.
T Consensus 387 kme~yLGirp~~d~e 401 (497)
T COG2317 387 KMEEYLGIRPKNDAE 401 (497)
T ss_pred HHHHHcCCCCCCccc
Confidence 999999999986654
No 22
>KOG2089|consensus
Probab=98.66 E-value=4.1e-06 Score=95.81 Aligned_cols=383 Identities=16% Similarity=0.189 Sum_probs=223.1
Q ss_pred hhHhhHHhhhcc-cc---CCCChHhHHHHHHHHHHHHHhhhcceeccCCCC---CC------------------------
Q psy17158 269 LNMSKMTTDFWE-NS---VFVRPKDRDIYSSVLSDMQKLFATAKLCPYNAS---AS------------------------ 317 (686)
Q Consensus 269 ~~~kRqL~~L~~-g~---a~L~~e~~~el~~l~s~m~~iYstakvC~~~~~---~~------------------------ 317 (686)
|..+|.|+.+-. |. -.|++++.+++.++...|+.+-....--...+. .+
T Consensus 154 pe~~RylE~~ike~k~nGL~L~~~kr~~ik~ikk~l~~l~~~f~~nvne~~~~~t~litd~~el~glPps~L~~la~~~~ 233 (718)
T KOG2089|consen 154 PEAQRYLEKLIKEGKLNGLHLDDDKREEIKEIKKELSELSIKFSKNVNEDTKKFTFLITDKKELEGLPPSFLQSLAKDED 233 (718)
T ss_pred HHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccceeeecHHHhccCCHHHHHHHhhccc
Confidence 888898886665 32 247888888888888777665422211000000 00
Q ss_pred CC--C--CccCCChhhHHHHHhcCCCHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHcCCCChHHHHh---h
Q psy17158 318 ND--T--KCNLDFDPTVINIMATSRDPKELAYYWQEFRNKTGK---LMRKKYAKYVQILNEGVRLSHYKDAGDSWI---A 387 (686)
Q Consensus 318 ~~--g--~c~l~LepdL~~Ima~SrD~~eLk~aW~aWr~~vg~---~~r~~y~~~V~L~N~aAr~nGf~d~ge~Wr---~ 387 (686)
++ | +-+|. .|++-.+|..-.++..|+.+|.||-...|. .-..+..+++.|+-+.|+.+||+++.+|-. -
T Consensus 234 ~k~sgpwkiTl~-~p~~~pvmk~c~~r~tR~~v~~A~~~ra~~~~~eNs~ii~~l~~lR~~lAklLGY~t~Ad~~L~~kM 312 (718)
T KOG2089|consen 234 DKGSGPWKITLK-YPHYFPVMKHCKIRQTRKTVWRAYNSRASEGDLENSAIIEQLLKLRLELAKLLGYSTYADYSLAMKM 312 (718)
T ss_pred CCCCCceEEEec-ccchhHHHHhCCcHHHHHHHHHHHhccCCcccccccHHHHHHHHHHHHHHHHhCchhHHHHHHHHHh
Confidence 11 1 11244 378999999999999999999999999988 778889999999999999999999999932 1
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhCCCccCCCCCcccccccccccccccccccccccCCC--CC
Q psy17158 388 LYNQPHFKETIEKLWTDIKPLYVELHAYVRRKLL---AKYGPEVVFEKEPIPAHLLGNMWAQSWSNIYDITQPYPD--IQ 462 (686)
Q Consensus 388 ~Ye~~~~~~~~e~lw~qIkPLY~qLHayVR~kL~---~~YG~~~v~~~gpIPAHLLGnmwaq~W~niyd~~~P~P~--~~ 462 (686)
.=.++...+.+++|.+.|+||-..=-+..-..++ +.+| +..++-|- +||+..--.. ..
T Consensus 313 a~ss~tv~~fl~dL~~kL~pl~~~e~~v~~elk~~e~k~~g---~~~~~~~~--------------~wD~~yy~~~~~e~ 375 (718)
T KOG2089|consen 313 AKSSETVVEFLDDLSQKLRPLGIDERSVLLELKKGEAKDRG---APFDGKLT--------------AWDLRYYMKRVEES 375 (718)
T ss_pred hcCcHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHhcC---CCccccch--------------hhHHHHHHHHHHHH
Confidence 2233568899999999999996654443333333 5667 44444432 3333211000 01
Q ss_pred CCChhHHHHHccC----cHHHHHHHHHHHHHhcCCCCCCh-HHHhccc---------------------cccCCCCCccc
Q psy17158 463 EPDITKELQRQNY----TVLKMFKKAEDFFLSLNMSKMTT-DFWENSV---------------------FVRPKDRDIVC 516 (686)
Q Consensus 463 ~~Dvt~~l~~q~y----t~~~Mfk~Ae~FF~SLGL~~mp~-~FW~~Sm---------------------~~kp~dr~v~C 516 (686)
..||+++-++.-+ +-.-||..++.-| .|-|.+++. +-|...+ +.|+++++..|
T Consensus 376 ~f~vd~~~LreyFPl~~v~~Gl~~i~q~LF-glkf~e~~da~vWh~dVr~y~v~D~~Sg~~vG~fY~D~y~RegK~gh~~ 454 (718)
T KOG2089|consen 376 KFDVDQEDLREYFPLPVVLSGLFGIYQTLF-GLKFEEATDAEVWHADVRVYTVKDSASGNPVGYFYLDPYPREGKYGHAA 454 (718)
T ss_pred hcCCCHHHHHhhCCcHHHHHHHHHHHHHHh-CceeeecCCchhcccceeEEeccCCCCCceeeEEEeccCCCccccchhh
Confidence 3455554444332 4556888888766 355555555 7776332 36666655433
Q ss_pred ccccccCCCCCc--eeEEecCc--------------CCcchHHHHHHHHHHHHHHHHhcCCCCCCCCCC---CchhHhHH
Q psy17158 517 HGSAWDFHDGKT--YRIKLCAL--------------VGEDDLTTIHHEMGHIEYDMMYSQQLPFYQTSP---NPGFHEAV 577 (686)
Q Consensus 517 hasAwDf~~~~D--~RIkmCt~--------------vt~~Df~tvHHEmGHi~Y~~~Y~~qP~~fR~gA---NpgFhEAI 577 (686)
.-.-=.+|...| .||=-|+- ...+++.|..||+||+.=- .....++.--.|. -.-|-|+-
T Consensus 455 ~f~l~~~~~~~~ss~~~PVaalv~nfS~p~~~kpsll~~~ev~t~FheFGh~~q~-ll~Qa~~~~fsG~~~vewDave~p 533 (718)
T KOG2089|consen 455 VFGLQPGCLQKDSSRRIPVAALVCNFSKPQSDKPSLLGHDEVETLFHEFGHVLQH-LLTQADFARFSGPRNVEWDAVEVP 533 (718)
T ss_pred hhccchhhhccCCccccchHHHHHhcCCcccCCCCccchHHHHHHHHHHhHHHHH-HHhcCccccccCcccCCcchhhch
Confidence 322222232222 23222221 1456899999999999322 2355555543554 45788888
Q ss_pred HHHHHHhhcChhHHHHhC-CCCCCCCCChhhhHHHHHHH-----hhhhhccCchhhhhhhhhHhhcCCCCChhhHHHHHH
Q psy17158 578 GDTIVLSVKTHKHLKRIG-LLKEDFKDDPESTINELFKF-----GLERLTFPPFGYLTDLWRWSVFNGSIPEDQYETAWW 651 (686)
Q Consensus 578 gd~iaLSv~TP~hL~~iG-Ll~~~~~~~~e~~IN~Ll~~-----AL~kI~fLPf~~~~D~WRw~VF~g~i~~~~~N~~WW 651 (686)
+-++..=+..|.-|.++- =..+. +.-.+.-+|.|... +|..+--|=|+. +| -.+++.+ .-+.-..|-
T Consensus 534 sq~Lenwv~~~d~L~~lS~Hy~tg-e~l~eEl~~kl~~~r~~~~gl~tlrqL~~a~-~D---~~lht~~--d~~~~~~~~ 606 (718)
T KOG2089|consen 534 SQFLENWVWDPDTLRSLSKHYKTG-EPLPEELLKKLILTRTVNAGLFTLRQLVLAD-FD---LELHTKT--DADLADTYR 606 (718)
T ss_pred HHHHHHhccCchHhhhhcccccCC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hh---HHHhhcc--ccchHHHHH
Confidence 888777777787776441 11111 12223334443322 222222222211 12 3333331 123336688
Q ss_pred HHHHHhCcccCCCCCCCCCCCccCcccccCC
Q psy17158 652 KLREEYQGVQPPMPRSEDDFDPGSKYHIPNN 682 (686)
Q Consensus 652 ~Lr~kYQGI~pPv~R~e~dFDpgAKyHI~~n 682 (686)
+|..+|++ .|+ +..|--|.+==||.++
T Consensus 607 ~l~~~i~~-~p~---~~~d~~pcsF~hifa~ 633 (718)
T KOG2089|consen 607 QLCQEISI-VPA---TPGDNMPCSFGHIFAG 633 (718)
T ss_pred Hhchhhee-cCC---CCCCCCCccccchhcC
Confidence 99999999 443 4444456666677764
No 23
>cd06258 Peptidase_M3_like The peptidase M3-like family, also called neurolysin-like family, is part of the "zincins" metallopeptidases, and includes M3, M2 and M32 families of metallopeptidases. The M3 family is subdivided into two subfamilies: the widespread M3A, which comprises a number of high-molecular mass endo- and exopeptidases from bacteria, archaea, protozoa, fungi, plants and animals, and the small M3B, whose members are enzymes primarily from bacteria. Well-known mammalian/eukaryotic M3A endopeptidases are the thimet oligopeptidase (TOP; endopeptidase 3.4.24.15), neurolysin (alias endopeptidase 3.4.24.16), and the mitochondrial intermediate peptidase. The first two are intracellular oligopeptidases, which act only on relatively short substrates of less than 20 amino acid residues, while the latter cleaves N-terminal octapeptides from proteins during their import into the mitochondria. The M3A subfamily also contains several bacterial endopeptidases, collectively called olig
Probab=98.36 E-value=1.5e-06 Score=94.12 Aligned_cols=86 Identities=24% Similarity=0.440 Sum_probs=76.0
Q ss_pred CCCCCCCCCccccCC--CCchHHHHHHHHHHHhHHHHHHHHhCCCCCCCCCCCchhhhhcccchhhhhhhcCCchhhhhh
Q psy17158 4 SEDDFDPGSKYHIPN--NVEYLRYFVSYISQFQFHKALCTEAGQFDPKNPLKTPLHQYYKDAGDSWIALYNQPHFKETIE 81 (686)
Q Consensus 4 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (686)
.++.+++.++.|+.. ..-|..|.+|.|+.+|+++++|...|
T Consensus 277 ~~~~~~~~~~~H~~~gy~~yyy~Y~~~~v~a~qi~~~~~~~~~------------------------------------- 319 (365)
T cd06258 277 DPSTPDPAAFPHLAGGSPAYYYGYLLAEMLASQLRATFKKKVG------------------------------------- 319 (365)
T ss_pred CCCCCCCCccchhccCcccchHHHHHHHHHHHHHHHHHHhcCC-------------------------------------
Confidence 455688889999987 67899999999999999999998533
Q ss_pred hhhhccchhhhhhhHHHHHhhhhhcCCccccccCCcchhhHHHhhhhcccCCCCCCCCCCCCcccccCCCcHHHHHHHHH
Q psy17158 82 KLWTDIKPLYLELHAYVRRKLLAKYGPEVVFEKEPIPAHLLVHKALCTEAGQFDPKNPLKTPLHQCDIYGSKKAGNLFKK 161 (686)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~c~~~~~~~~~~~~~~pLh~Cdiy~s~~aG~~l~~ 161 (686)
|+..++++|+.|++
T Consensus 320 ------------------------------------------------------------------~~~~~~~~g~~l~~ 333 (365)
T cd06258 320 ------------------------------------------------------------------YLTDNPEAGPRLRE 333 (365)
T ss_pred ------------------------------------------------------------------CCCCCHHHHHHHHH
Confidence 33467899999999
Q ss_pred -HHhCCCCCChHHHHHHhcCCCCCChhHHHHhh
Q psy17158 162 -MLSLGASKPWPEALEVLTGQKNLDAGPMLQYF 193 (686)
Q Consensus 162 -~m~~G~S~~W~~~l~~~tg~~~~~a~~ll~Yf 193 (686)
+|+.|+|++|.|+++.+||+. +|++++++||
T Consensus 334 ~il~~G~s~~~~el~~~~~G~~-~~~~a~~~~~ 365 (365)
T cd06258 334 HILRPGNSEPWKELLKRATGED-PNADAFLDHF 365 (365)
T ss_pred HHccCcCCcCHHHHHHHHcCCC-CChHHHHhcC
Confidence 999999999999999999977 9999999997
No 24
>COG0339 Dcp Zn-dependent oligopeptidases [Amino acid transport and metabolism]
Probab=98.29 E-value=1.6e-05 Score=91.90 Aligned_cols=314 Identities=14% Similarity=0.175 Sum_probs=175.0
Q ss_pred CCChhhHHHHHhcCCCHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHcCCCChHHHHhhc--CC-cchHHH
Q psy17158 324 LDFDPTVINIMATSRDPKELAYYWQEFRNKTGKL----MRKKYAKYVQILNEGVRLSHYKDAGDSWIAL--YN-QPHFKE 396 (686)
Q Consensus 324 l~LepdL~~Ima~SrD~~eLk~aW~aWr~~vg~~----~r~~y~~~V~L~N~aAr~nGf~d~ge~Wr~~--Ye-~~~~~~ 396 (686)
+. .|....+|+.+.|.+.|+.+|.+|....... -+++-.++++||-+.|+++||+++.+|-... -+ .+.+..
T Consensus 221 l~-~p~~~p~l~~~~~r~lRe~~y~A~~~ra~~~~~~~n~~ii~~~L~LR~E~A~LLGf~~yA~~~L~~kMA~~p~~Vl~ 299 (683)
T COG0339 221 LD-IPSYLPVLTYADNRALREKLYRAYVTRASEGGPNDNRAIIEEILKLRAELAKLLGFSNYAEYSLADKMAKTPEAVLN 299 (683)
T ss_pred ec-ccchhHHHHhcccHHHHHHHHHHHhhhccccCCcccHHHHHHHHHHHHHHHHHcCcccHHHHhHHHHhhcCHHHHHH
Confidence 44 3888999999999999999999988765443 4589999999999999999999999984321 12 245668
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCCccCCCCCcccccccccccccccccccccccCCCCCCCChhHHHHHccC
Q psy17158 397 TIEKLWTDIKPLYVELHAYVRRKLLA-KYGPEVVFEKEPIPAHLLGNMWAQSWSNIYDITQPYPDIQEPDITKELQRQNY 475 (686)
Q Consensus 397 ~~e~lw~qIkPLY~qLHayVR~kL~~-~YG~~~v~~~gpIPAHLLGnmwaq~W~niyd~~~P~P~~~~~Dvt~~l~~q~y 475 (686)
.++.||..-+|..++--+-++.-..+ ..|...+. | =+|.....-+.- ..++++++=++.=+
T Consensus 300 fL~~l~~ka~~~a~~e~a~L~~~~~~~~~~~~~l~---~-----------WD~~yyaeK~r~----~~y~~de~elrpYF 361 (683)
T COG0339 300 FLNDLAEKARPQAEKELAELQAFAAEEEGGLPELQ---P-----------WDWAYYAEKQRQ----EKYAFDEEELRPYF 361 (683)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhccCCcccc---h-----------hhHHHHHHHHHh----hhcCCCHHHhhhcC
Confidence 89999999999866555555444444 24532221 1 223333222211 12233322221111
Q ss_pred ----cHHHHHHHHHHHHHhcCCCCC-ChHHHh--------------------ccccccCCCCCcccccccccCCCCCc--
Q psy17158 476 ----TVLKMFKKAEDFFLSLNMSKM-TTDFWE--------------------NSVFVRPKDRDIVCHGSAWDFHDGKT-- 528 (686)
Q Consensus 476 ----t~~~Mfk~Ae~FF~SLGL~~m-p~~FW~--------------------~Sm~~kp~dr~v~ChasAwDf~~~~D-- 528 (686)
...-||..+..-| .|.+.+. +-+-|- --.|.|+++|++--+.+ +..+..
T Consensus 362 ~l~~Vl~GlF~~~~rLf-GI~~~e~~~~~vwHpDVr~~~v~d~~g~~~g~fY~DlyaR~~KrgGAWM~~---~~~~~~~~ 437 (683)
T COG0339 362 PLNKVLEGLFEVAKRLF-GITFVERKDIPVWHPDVRVFEVFDENGELIGLFYLDLYARDGKRGGAWMDD---FVSQRRLD 437 (683)
T ss_pred ChhHHHHHHHHHHHHHc-CeEEEECCCCCccCCCceEEEEEcCCCCEEEEEEeecccCCCCccchHHHH---hhhccccc
Confidence 2245788877766 2333332 223342 11348888877542211 111111
Q ss_pred -------eeEEec-CcC---------CcchHHHHHHHHHHHHHHHHh-cCCCCCCCCCCCch--hHhHHHHHHHHhhcCh
Q psy17158 529 -------YRIKLC-ALV---------GEDDLTTIHHEMGHIEYDMMY-SQQLPFYQTSPNPG--FHEAVGDTIVLSVKTH 588 (686)
Q Consensus 529 -------~RIkmC-t~v---------t~~Df~tvHHEmGHi~Y~~~Y-~~qP~~fR~gANpg--FhEAIgd~iaLSv~TP 588 (686)
+=-..| ... +.+|..|+.|||||.-=-|.= -+-|-+ .|.|-. |-|.=.-++--=...|
T Consensus 438 ~~~~q~PV~ylvCNF~~p~~gkPaLls~dEV~TLFHEfGHgLH~mlt~v~~~~v--sGt~v~wDfVElPSQ~mE~w~~~p 515 (683)
T COG0339 438 DGGGQKPVIYLVCNFTKPVGGKPALLSHDEVTTLFHEFGHGLHHLLTRVKYPGV--SGTNVPWDFVELPSQFMENWCWEP 515 (683)
T ss_pred CCCcccceEEEeccCCCCCCCCCceeeHHHHHHHHHHhhhHHHHHhhcCCcccc--CCCCCCcchhhccHHHHHHhhcCH
Confidence 112234 222 577999999999999444432 233333 555521 2222222333335667
Q ss_pred hHHHHhCCC-CCCCCCChhhhHH-----HHHHHhhhhhccCchhhhhhhhhHhhcCCCCChhhHHHHHHHHHHHhCcccC
Q psy17158 589 KHLKRIGLL-KEDFKDDPESTIN-----ELFKFGLERLTFPPFGYLTDLWRWSVFNGSIPEDQYETAWWKLREEYQGVQP 662 (686)
Q Consensus 589 ~hL~~iGLl-~~~~~~~~e~~IN-----~Ll~~AL~kI~fLPf~~~~D~WRw~VF~g~i~~~~~N~~WW~Lr~kYQGI~p 662 (686)
.=|.++..- .+. ..-...-++ ..+..++..+-+|-|+++ |+==+.-| ......+.-+-+-+++.+.-=+.+
T Consensus 516 ~vL~~~a~Hy~TG-e~lP~~ll~k~laaknf~~g~~t~rql~fal~-Dm~~H~~~-~~~~~~~i~~~~~~~~~~~~v~~~ 592 (683)
T COG0339 516 EVLAKYARHYQTG-EPLPKELLDKMLAAKNFQAGLFTLRQLEFALF-DMRLHTEF-DPDANADILEFEAEVLKKVAVLPS 592 (683)
T ss_pred HHHHHHHHhhccC-CcCHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-HHHhhccC-CcccccCHHHHHHHHHHHhCCCCC
Confidence 777765332 111 111222233 345677888888888874 43223333 222334455566677777765544
Q ss_pred CCC
Q psy17158 663 PMP 665 (686)
Q Consensus 663 Pv~ 665 (686)
|+.
T Consensus 593 ~~~ 595 (683)
T COG0339 593 IPP 595 (683)
T ss_pred cch
Confidence 444
No 25
>KOG2090|consensus
Probab=97.91 E-value=0.00039 Score=79.38 Aligned_cols=371 Identities=14% Similarity=0.166 Sum_probs=203.6
Q ss_pred ccCCCChHhHHHHHHHHHHHHHhhhccee-ccCCCCCCCCCCccC--------------------CChhhHHHHHhcCCC
Q psy17158 281 NSVFVRPKDRDIYSSVLSDMQKLFATAKL-CPYNASASNDTKCNL--------------------DFDPTVINIMATSRD 339 (686)
Q Consensus 281 g~a~L~~e~~~el~~l~s~m~~iYstakv-C~~~~~~~~~g~c~l--------------------~LepdL~~Ima~SrD 339 (686)
|.. |+++++++.++|.+++..+=....- |.+-.++. -.+|-. +..-.+..+++.+-|
T Consensus 172 GIh-L~~~kr~kfv~Ls~eI~~lg~~F~~n~~~~P~~~-l~~s~~~l~~~~~~~~~~k~knF~~~t~~~~i~~ll~~~~d 249 (704)
T KOG2090|consen 172 GIH-LDPEKREKFVQLSSEIFDLGREFQNNTDRFPDNK-LPNSLERLPFSKKNFIESKRKNFDQATDPYIIYGLLSSSED 249 (704)
T ss_pred ccc-CCHHHHHHHHHHhHHHHHHHHHHHhccccCCccc-cchhhhhccCcchhhHHHHhcCCCcCCCCeeeehhhhcCCC
Confidence 544 8999999999999987665322211 11000000 011210 111257788999999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCChHHHHhhcC--C-cchHHHHHHHHHHHHHHHHHHHHHHH
Q psy17158 340 PKELAYYWQEFRNKTGKLMRKKYAKYVQILNEGVRLSHYKDAGDSWIALY--N-QPHFKETIEKLWTDIKPLYVELHAYV 416 (686)
Q Consensus 340 ~~eLk~aW~aWr~~vg~~~r~~y~~~V~L~N~aAr~nGf~d~ge~Wr~~Y--e-~~~~~~~~e~lw~qIkPLY~qLHayV 416 (686)
.+.|+.+|...+ .....-.+....++..+-+.|++.||+.+.++-...= + .+.+.+.++.|-+.++|-..+--+.+
T Consensus 250 ~~vRk~vY~~~~-~~~~~q~~~L~~Li~sRheLa~l~G~~SfA~~al~~~~a~~pk~V~~Fl~~Ls~k~~~~~~kel~~i 328 (704)
T KOG2090|consen 250 ESVRKMVYNTFH-SPSDIQVKLLEHLISSRHELAKLVGKSSFAHRALEGKLAKNPKTVRSFLEELSEKLSEKTDKELAVI 328 (704)
T ss_pred HHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHHHHhCcchHHHHHhhccccCChHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 999999999977 4445566778999999999999999999999854322 2 25688999999999999999999999
Q ss_pred HHHHHHhhCCCccCCCCCcccccccccccccccccccccccCCCCCCCChhHHHHHccCcHHHHHHHHHHHHHhc-CC--
Q psy17158 417 RRKLLAKYGPEVVFEKEPIPAHLLGNMWAQSWSNIYDITQPYPDIQEPDITKELQRQNYTVLKMFKKAEDFFLSL-NM-- 493 (686)
Q Consensus 417 R~kL~~~YG~~~v~~~gpIPAHLLGnmwaq~W~niyd~~~P~P~~~~~Dvt~~l~~q~yt~~~Mfk~Ae~FF~SL-GL-- 493 (686)
|.-.++.-|. .+.+| ..|.--|=--.-.-.. .++...+..-=++--...+=-...|.+| |+
T Consensus 329 ~~mk~k~~~~----~~~e~----------~~WD~~YYT~~~r~~~--~~~~~~~~~~fFslg~~ieGLs~L~~~LyGirl 392 (704)
T KOG2090|consen 329 RDMKKKENNN----NNAEI----------EPWDRPYYTSMYRQSN--NSLNPSIYSPFFSLGSCIEGLSTLFQRLYGIRL 392 (704)
T ss_pred HHHHhhhcCC----CCCcc----------ccccchhhhhHhhccc--CCCCcceeeccccHHHHHHHHHHHHHHHhCeee
Confidence 9887666552 12222 3343333110000000 0111111000011111111112222222 32
Q ss_pred ---CCCChHHHhcc--------------------ccccCCCCCcccccccccCCCC-----Ccee----EEecC------
Q psy17158 494 ---SKMTTDFWENS--------------------VFVRPKDRDIVCHGSAWDFHDG-----KTYR----IKLCA------ 535 (686)
Q Consensus 494 ---~~mp~~FW~~S--------------------m~~kp~dr~v~ChasAwDf~~~-----~D~R----IkmCt------ 535 (686)
+.-|.+-|..+ +|+|+++....||-+ ++-+ +++- +.||.
T Consensus 393 ~~~~l~pGE~WhpdV~KL~vv~E~eg~lG~IY~Dlf~R~gK~~g~aHFT---Ir~sr~l~Dg~yQlPVi~L~cnf~rss~ 469 (704)
T KOG2090|consen 393 IPEPLAPGEVWHPDVRKLNVVHEQEGLLGYIYCDLFERPGKTVGDAHFT---IRGSRQLSDGTYQLPVIVLVCNFVRSSQ 469 (704)
T ss_pred eccCCCCccccCchhhhheeecCCCCceeEEEEEeeccCCCCCCCceEE---eeccccCCCCCeeceeeEEeeccccccc
Confidence 33455788633 348999988899954 2221 1222 56663
Q ss_pred ----cCCcchHHHHHHHHHHHHHHHHh--cCCCCCCCCCCCc-hhHhHHHHHHHHhhcChhHHHHhCCCCCCCCCChhhh
Q psy17158 536 ----LVGEDDLTTIHHEMGHIEYDMMY--SQQLPFYQTSPNP-GFHEAVGDTIVLSVKTHKHLKRIGLLKEDFKDDPEST 608 (686)
Q Consensus 536 ----~vt~~Df~tvHHEmGHi~Y~~~Y--~~qP~~fR~gANp-gFhEAIgd~iaLSv~TP~hL~~iGLl~~~~~~~~e~~ 608 (686)
..+..++.|+.|||||+.--|.= .-|-+. .-..| .|-|-=.-++-.-+..+.=|..+|---.....-.+..
T Consensus 470 ~s~t~L~~~~vetLFHEmGHAMHSmLGrT~YQhvt--GTRc~tDfaEiPSiLMEyFa~D~rVl~~~aRhy~t~e~l~~~m 547 (704)
T KOG2090|consen 470 SSPTFLSLSEVETLFHEMGHAMHSMLGRTHYQHVT--GTRCPTDFAEIPSILMEYFANDYRVLRFFARHYSTGEPLPEDM 547 (704)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHHhccchhcccc--CcccchhHhhhhHHHHHHHhcchHHHHHHHHHcCCCCCCCHHH
Confidence 44667899999999999776652 223333 22233 3443333333334666777775542211101223334
Q ss_pred HHHHHH-----HhhhhhccCchhhhhhhhhHhhcCC-CCChhhHHHHHHHHHHHhCcc--cCCCCC---CCCCCCccCcc
Q psy17158 609 INELFK-----FGLERLTFPPFGYLTDLWRWSVFNG-SIPEDQYETAWWKLREEYQGV--QPPMPR---SEDDFDPGSKY 677 (686)
Q Consensus 609 IN~Ll~-----~AL~kI~fLPf~~~~D~WRw~VF~g-~i~~~~~N~~WW~Lr~kYQGI--~pPv~R---~e~dFDpgAKy 677 (686)
+|.|+. .|.+....+ |.-++|+-=+.. + ....++--...-++..|+.|+ +||+.. -.--+--||+|
T Consensus 548 v~~l~~s~n~~Aa~e~q~Qv-~ya~~Dq~fhg~--~~~~~~~~~~~~~~~v~~k~~~~~~~~~taw~~rFsHl~gYGA~Y 624 (704)
T KOG2090|consen 548 VNRLCESRNSFAAQETQRQV-FYALLDQEFHGI--ACPLIAEDTTDLLSEVKRKFSGLLYVPPTAWQLRFSHLVGYGATY 624 (704)
T ss_pred HHHHHHHhccchhHHHHHHH-HHHHHHHHHhcc--cccccccchhHHHHHHHHhcCCCCCCCCCccccchhhhhccCchH
Confidence 555442 334444443 444567543432 2 111124455677899999992 333332 22224456666
Q ss_pred c
Q psy17158 678 H 678 (686)
Q Consensus 678 H 678 (686)
+
T Consensus 625 Y 625 (704)
T KOG2090|consen 625 Y 625 (704)
T ss_pred H
Confidence 4
No 26
>cd06459 M3B_Oligoendopeptidase_F Peptidase family M3B Oligopeptidase F (PepF; Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and includes oligoendopeptidase F from Lactococcus lactis. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids with fairly broad specificity. The PepF gene is duplicated in L. lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the PepF Bacillus amyloliquefaciens oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over expressed from a multicopy plasmid.
Probab=89.98 E-value=0.96 Score=49.89 Aligned_cols=38 Identities=8% Similarity=0.047 Sum_probs=31.4
Q ss_pred CCCCCCCCCccccCC-CCchHHHHHHHHHHHhHHHHHHH
Q psy17158 4 SEDDFDPGSKYHIPN-NVEYLRYFVSYISQFQFHKALCT 41 (686)
Q Consensus 4 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 41 (686)
.+..+....+.|+-. +.-|..|.+|.++..|+++..|.
T Consensus 343 ~~~~~~w~~~~H~~~~~fYyy~Y~~g~~~a~~l~~~~~~ 381 (427)
T cd06459 343 EEHGYEWARIPHFYYVPFYVYPYAFGQLAALALYAKYKE 381 (427)
T ss_pred CccCeeeeecCeecCCCCcChHHHHHHHHHHHHHHHHHH
Confidence 455677778899875 56688999999999999999886
No 27
>TIGR02289 M3_not_pepF oligoendopeptidase, M3 family. This family consists of probable oligoendopeptidases in the M3 family, related to lactococcal PepF and group B streptococcal PepB (TIGR00181) but in a distinct clade with considerable sequence differences. The likely substrate is small peptides and not whole proteins, as with PepF, but members are not characterized and the activity profile may differ. Several bacteria have both a member of this family and a member of the PepF family.
Probab=89.12 E-value=1.2 Score=51.63 Aligned_cols=50 Identities=24% Similarity=0.202 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhCCCCCChHHHHHHhcCCCCCChhHHHHhhhHHHHHHHH
Q psy17158 153 KKAGNLFKKMLSLGASKPWPEALEVLTGQKNLDAGPMLQYFDPLYKWLKE 202 (686)
Q Consensus 153 ~~aG~~l~~~m~~G~S~~W~~~l~~~tg~~~~~a~~ll~Yf~PL~~WL~~ 202 (686)
+.+-+.-.++|+.|+|++..++++.+.-...++.+++.+.|+++.+||++
T Consensus 498 ~~~~~~Y~~~L~~Ggs~~~~ell~~aGid~~f~~~~~~~~~~~~~~~l~~ 547 (549)
T TIGR02289 498 EKALKDYKKLCSAGGSQSFLELYETAGLTFPFSEERIKEIVSFVEKLLEE 547 (549)
T ss_pred HHHHHHHHHHHhccCCcCHHHHHHHhCCCCCCCcccHHHHHHHHHHHHhh
Confidence 56668889999999999999999996446667999999999999999975
No 28
>cd06460 M32_Taq Peptidase family M32 is a subclass of metallocarboxypeptidases which are distributed mainly in bacteria and archaea, and contain a HEXXH motif that coordinates a divalent cation such as Zn2+ or Co2+, so far only observed in the active site of neutral metallopeptidases but not in carboxypeptidases. M32 includes the thermostable carboxypeptidases (E.C. 3.4.17.19) from Thermus aquaticus (TaqCP) and Pyrococcus furiosus (PfuCP), which have broad specificities toward a wide range of C-terminal substrates that include basic, aromatic, neutral and polar amino acids. These enzymes have a similar fold to the M3 peptidases such as neurolysin and the M2 angiotensin converting enzyme (ACE). Novel peptidases from protozoa Trypanosoma cruzi, a causative agent of Chagas' disease, and Leishmania major, a parasite that causes leishmaniasis, are the first eukaryotic M32 enzymes identified so far, thus making these enzymes an attractive potential target for drug development against these o
Probab=78.16 E-value=2.8 Score=47.19 Aligned_cols=125 Identities=17% Similarity=0.208 Sum_probs=82.4
Q ss_pred CCCchhhh--hcccchhhhhhhcCCchhhhhhhhhhccchhhhhhhHHHHHh-hhhhcCCccccccCCc---chh-----
Q psy17158 52 LKTPLHQY--YKDAGDSWIALYNQPHFKETIEKLWTDIKPLYLELHAYVRRK-LLAKYGPEVVFEKEPI---PAH----- 120 (686)
Q Consensus 52 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~----- 120 (686)
+.+++|+. |..-- ++++++.--+.|.++|++.-..|+|+.+-+... .+.-.|-+ .++. |.-
T Consensus 254 vty~lHiilR~e~Ek----~l~~G~l~v~dLp~~W~~~~~eylG~~~~~d~~g~lQd~HW~----~g~fGYfptYalG~l 325 (396)
T cd06460 254 VTYNLHIMLRYELEK----ALIEGDLEVADLPEAWNEKMKEYLGIRPPNDAEGCLQDIHWS----GGSFGYFPTYTLGNL 325 (396)
T ss_pred hhHHHHHHHHHHHHH----HHHcCCCCHHHHHHHHHHHHHHHcCCCCCCCccccccccccc----cCcCCcCchhHHHHH
Confidence 36788876 43322 899999999999999999999999998654422 12222222 2322 211
Q ss_pred --hHHHhhhhcccCCCCCCCCCCCCcccccCCCcHHHHHHH-HHHHhCCCCCChHHHHHHhcCCCCCChhHHHHhhh
Q psy17158 121 --LLVHKALCTEAGQFDPKNPLKTPLHQCDIYGSKKAGNLF-KKMLSLGASKPWPEALEVLTGQKNLDAGPMLQYFD 194 (686)
Q Consensus 121 --~~~~~a~c~~~~~~~~~~~~~~pLh~Cdiy~s~~aG~~l-~~~m~~G~S~~W~~~l~~~tg~~~~~a~~ll~Yf~ 194 (686)
.||+.++..+-+.+.. -+-+=|| ....+-| .++++.|++..+.|.|+.+||+ .++++++++|..
T Consensus 326 ~Aaql~~~~~~~~~~~~~------~i~~g~f---~~~~~wL~e~i~~~G~~~~p~eLl~~atG~-~l~~~~f~~yL~ 392 (396)
T cd06460 326 YAAQLFAAAKKDLPDIDE------QIERGDF---SPLLEWLRENIHQHGSRYSPDELLKKATGE-PLNPEYFLEYLE 392 (396)
T ss_pred HHHHHHHHHHHhCccHHH------HHhccCh---HHHHHHHHHHHHhccCCCCHHHHHHHHhCC-CCChHHHHHHHH
Confidence 5889988887443210 0111111 1112222 2489999999999999999999 799999998865
No 29
>cd06456 M3A_DCP_Oligopeptidase_A Peptidase family M3 dipeptidyl carboxypeptidase (DCP; Dcp II; peptidyl dipeptidase; EC 3.4.15.5). This metal-binding M3A family also includes oligopeptidase A (OpdA; EC 3.4.24.70) enzyme. DCP cleaves dipeptides off the C-termini of various peptides and proteins, the smallest substrate being N-blocked tripeptides and unblocked tetrapeptides. DCP from E. coli is inhibited by the anti-hypertensive drug captopril, an inhibitor of the mammalian angiotensin converting enzyme (ACE, also called peptidyl dipeptidase A). Oligopeptidase A (OpdA) may play a specific role in the degradation of signal peptides after they are released from precursor forms of secreted proteins. It can also cleave N-acetyl-L-Ala.
Probab=69.91 E-value=6.2 Score=44.60 Aligned_cols=41 Identities=22% Similarity=0.398 Sum_probs=37.2
Q ss_pred cHHHHHHHH-HHHhCCCCCChHHHHHHhcCCCCCChhHHHHhh
Q psy17158 152 SKKAGNLFK-KMLSLGASKPWPEALEVLTGQKNLDAGPMLQYF 193 (686)
Q Consensus 152 s~~aG~~l~-~~m~~G~S~~W~~~l~~~tg~~~~~a~~ll~Yf 193 (686)
++++|++++ ++|+.|+|++=.+.++.+.| ++.|.+|||+..
T Consensus 379 ~~~~G~~~r~~iL~~Ggs~~~~e~~~~F~G-r~p~~~a~l~~~ 420 (422)
T cd06456 379 NRETGRRFRDTILSKGGSRDPMELFRAFRG-RDPSIEALLRRR 420 (422)
T ss_pred CHHHHHHHHHHHhhcCCCcCHHHHHHHhcC-CCCChHHHHHHc
Confidence 579999998 89999999999999999999 788999998864
No 30
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=69.16 E-value=6.6 Score=40.41 Aligned_cols=47 Identities=23% Similarity=0.273 Sum_probs=35.4
Q ss_pred cchHHHHHHHHHHHHHHHHhcCCCCCCCCCCCchhHhHHHHHHHHh-hcChhHHHH
Q psy17158 539 EDDLTTIHHEMGHIEYDMMYSQQLPFYQTSPNPGFHEAVGDTIVLS-VKTHKHLKR 593 (686)
Q Consensus 539 ~~Df~tvHHEmGHi~Y~~~Y~~qP~~fR~gANpgFhEAIgd~iaLS-v~TP~hL~~ 593 (686)
.+..-++.|||.|+ ++.+. +..+-.++-|.|+|.+-+- -..|.|-.+
T Consensus 94 ~Ei~Gvl~HE~~H~--~Q~~~------~~~~P~~liEGIADyVRl~aG~~~~~w~~ 141 (205)
T PF04450_consen 94 DEIIGVLYHEMVHC--WQWDG------RGTAPGGLIEGIADYVRLKAGYAPPHWKR 141 (205)
T ss_pred HHHHHHHHHHHHHH--hhcCC------CCCCChhheecHHHHHHHHcCCCCccccC
Confidence 45688999999999 66555 5667889999999999877 224555443
No 31
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=58.21 E-value=22 Score=31.51 Aligned_cols=49 Identities=18% Similarity=0.334 Sum_probs=29.8
Q ss_pred eeEEecCcCCcch-H-HHHHHHHHHHHHHHHhcCCCCCCCCCCCchhHhHHHHHHH
Q psy17158 529 YRIKLCALVGEDD-L-TTIHHEMGHIEYDMMYSQQLPFYQTSPNPGFHEAVGDTIV 582 (686)
Q Consensus 529 ~RIkmCt~vt~~D-f-~tvHHEmGHi~Y~~~Y~~qP~~fR~gANpgFhEAIgd~ia 582 (686)
-+|-.+......+ + .++.||++|+.-...... -..+..-|+|++++.++
T Consensus 11 ~~i~~~~~~~~~~~~~~~l~HE~~H~~~~~~~~~-----~~~~~~W~~EG~A~y~~ 61 (128)
T PF13485_consen 11 NRIVVYFQGSDEDWLDRVLAHELAHQWFGNYFGG-----DDNAPRWFNEGLAEYVE 61 (128)
T ss_pred CEEEEecCCCCHHHHHHHHHHHHHHHHHHHHcCC-----CccCchHHHHHHHHHHh
Confidence 4455555444333 3 788999999943333221 13344568889888887
No 32
>PF10303 DUF2408: Protein of unknown function (DUF2408); InterPro: IPR018810 This entry represents a family of proteins conserved in fungi whose function is unknown.
Probab=54.47 E-value=61 Score=31.29 Aligned_cols=101 Identities=9% Similarity=0.090 Sum_probs=52.5
Q ss_pred hhHhhHHhhhcc-ccCC----CChHhHHHHHHHHHHHHHhh-hcceeccCCCCCCCCCCccCCChhhHHHHHhcCCCH-H
Q psy17158 269 LNMSKMTTDFWE-NSVF----VRPKDRDIYSSVLSDMQKLF-ATAKLCPYNASASNDTKCNLDFDPTVINIMATSRDP-K 341 (686)
Q Consensus 269 ~~~kRqL~~L~~-g~a~----L~~e~~~el~~l~s~m~~iY-stakvC~~~~~~~~~g~c~l~LepdL~~Ima~SrD~-~ 341 (686)
-.+||+|-.+.. +... -...++..+..=+.+|+..- ..||-|..+.+..-++ ...-+..++...-+. +
T Consensus 17 isIrR~L~~~~t~~k~~~~~~~~~~el~~lq~qL~eIe~~R~~DGKF~~~~~g~~~~~-----gQ~~l~~LLd~C~~li~ 91 (134)
T PF10303_consen 17 ISIRRSLLSLNTRSKFSDSSEESSSELKPLQEQLKEIESMRDVDGKFVSPDTGEVPPG-----GQAVLNGLLDDCFDLIE 91 (134)
T ss_pred HHHHHHHHHHHhccCCCccccccHHHHHHHHHHHHHHHHhccCCCCeeCCCCCCCCcc-----hHHHHHHHHHHHHHHHH
Confidence 367787766655 2221 12456666666666777777 6677765431111111 011222222222111 1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy17158 342 ELAYYWQEFRNKTGKLMRKKYAKYVQILNEGVRL 375 (686)
Q Consensus 342 eLk~aW~aWr~~vg~~~r~~y~~~V~L~N~aAr~ 375 (686)
.++.-=.+ ...+.++++++|.++++++|+.-++
T Consensus 92 dl~~~~~~-~~~~~~~l~~iY~~L~~ik~~LE~L 124 (134)
T PF10303_consen 92 DLLERKGE-EIEVDPSLQPIYDQLIDIKNTLENL 124 (134)
T ss_pred HHHHhccc-cccccHHHHHHHHHHHHHHHHHHhh
Confidence 11110000 3367889999999999999987554
No 33
>cd06455 M3A_TOP Peptidase M3 Thimet oligopeptidase (TOP; PZ-peptidase; endo-oligopeptidase A; endopeptidase 24.15; soluble metallo-endopeptidase; EC 3.4.24.15) family also includes neurolysin (endopeptidase 24.16, microsomal endopeptidase, mitochondrial oligopeptidase M, neurotensin endopeptidase, soluble angiotensin II-binding protein, thimet oligopeptidase II) which hydrolyzes oligopeptides such as neurotensin, bradykinin and dynorphin A. TOP and neurolysin are neuropeptidases expressed abundantly in the testis, but also found in the liver, lung and kidney. They are involved in the metabolism of neuropeptides under 20 amino acid residues long and cleave most bioactive peptides at the same sites, but recognize different positions on some naturally occurring and synthetic peptides; they cleave at distinct sites on the 13-residue bioactive peptide neurotensin, which modulates central dopaminergic and cholinergic circuits. TOP has been shown to degrade peptides released by the proteasom
Probab=52.88 E-value=17 Score=41.48 Aligned_cols=40 Identities=20% Similarity=0.370 Sum_probs=34.8
Q ss_pred cHHHHHHHH-HHHhCCCCCChHHHHHHhcCCCCCChhHHHHh
Q psy17158 152 SKKAGNLFK-KMLSLGASKPWPEALEVLTGQKNLDAGPMLQY 192 (686)
Q Consensus 152 s~~aG~~l~-~~m~~G~S~~W~~~l~~~tg~~~~~a~~ll~Y 192 (686)
++++|++++ ++|+.|+|++-.+.|+.++| +.++.+++++.
T Consensus 431 ~~~~g~~y~~~~L~~Ggs~~p~ell~~flG-r~~~~~a~~~~ 471 (472)
T cd06455 431 NPEVGLRYRDTVLAPGGSKDAADMLKDFLG-REPNNDAFLKS 471 (472)
T ss_pred CHHHHHHHHHHHhcCcCCcCHHHHHHHHhC-CCCChhHHhhc
Confidence 378999998 59999999999999999999 67788887763
No 34
>PF14247 DUF4344: Domain of unknown function (DUF4344)
Probab=51.45 E-value=16 Score=38.05 Aligned_cols=56 Identities=23% Similarity=0.310 Sum_probs=36.4
Q ss_pred cccccCCCCCceeEEecCcC-------------Ccch---------HHHHHHHHHHHHHHHHhcCCCCCCCCCCCchhHh
Q psy17158 518 GSAWDFHDGKTYRIKLCALV-------------GEDD---------LTTIHHEMGHIEYDMMYSQQLPFYQTSPNPGFHE 575 (686)
Q Consensus 518 asAwDf~~~~D~RIkmCt~v-------------t~~D---------f~tvHHEmGHi~Y~~~Y~~qP~~fR~gANpgFhE 575 (686)
.-+=-|+++.+-.|.||.+- +.+. +.|+.||+||+ ....-++|++= =+|
T Consensus 47 Ge~nA~ydPe~~~I~iCYEf~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~HE~GHA--lI~~~~lPv~G-------rEE 117 (220)
T PF14247_consen 47 GEDNAFYDPENRSITICYEFVDEILDRFAKANDPDEEYGQAAIGNVLFTLYHELGHA--LIDDLDLPVLG-------REE 117 (220)
T ss_pred CCCCCccCCCCCEEEECHHHHHHHHHHHHhCCcCcchHHHHHHHHHHHHHHHHHHHH--HHHHhcCCccc-------chh
Confidence 44445667666678888532 1111 36789999999 66677899983 355
Q ss_pred HHHHHHH
Q psy17158 576 AVGDTIV 582 (686)
Q Consensus 576 AIgd~ia 582 (686)
-..|.+|
T Consensus 118 DaaD~lA 124 (220)
T PF14247_consen 118 DAADQLA 124 (220)
T ss_pred hHHHHHH
Confidence 5566555
No 35
>PF02074 Peptidase_M32: Carboxypeptidase Taq (M32) metallopeptidase; InterPro: IPR001333 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M32 (carboxypeptidase Taq family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. Carboxypeptidase Taq is a zinc-containing thermostable metallopeptidase. It was originally discovered and purified from Thermus aquaticus; optimal enzymatic activity occurs at 80 celcius. Although very little is known about this enzyme, it is thought either to be associated with a membrane or to be particle bound.; GO: 0004181 metallocarboxypeptidase activity, 0006508 proteolysis; PDB: 1K9X_A 1KA4_A 1KA2_A 3DWC_A 1WGZ_A 3HQ2_A 3HOA_B.
Probab=40.21 E-value=43 Score=38.99 Aligned_cols=115 Identities=16% Similarity=0.170 Sum_probs=66.9
Q ss_pred hhhhcCCchhhhhhhhhhccchhhhhhhHHHH-HhhhhhcCCccccccCCcchh-------hHHHhhhhcccCCCCCCCC
Q psy17158 68 IALYNQPHFKETIEKLWTDIKPLYLELHAYVR-RKLLAKYGPEVVFEKEPIPAH-------LLVHKALCTEAGQFDPKNP 139 (686)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-------~~~~~a~c~~~~~~~~~~~ 139 (686)
.+|+++..--+.|.++|++--..|+||.|=+. .+.+.-+|=+-+..- =.|.- -||+.|++.+-+.
T Consensus 367 k~li~g~l~v~dLP~~Wn~km~eyLGi~p~~d~eG~LQDvHWs~G~fG-YFPtY~LG~~~AaQl~~~~~~~~pd------ 439 (494)
T PF02074_consen 367 KALINGELSVDDLPEAWNEKMEEYLGITPPNDAEGVLQDVHWSSGSFG-YFPTYALGNIYAAQLFAAMKKDIPD------ 439 (494)
T ss_dssp HHHHTTSS-GGGHHHHHHHHHHHHHS---SSCTTTTTS-STTTTT-TS--THHHHHHHHHHHHHHHHHHHHHTT------
T ss_pred HHHHcCCCChhhhHHHHHHHHHHHcCCCCCCCCccccccccccCCccc-cchhhHHHHHHHHHHHHHHHHHccC------
Confidence 57899999999999999999999999986322 222222322222211 12221 6899999887432
Q ss_pred CCCCcccccCCCc-HHHHHHHH-HHHhCCCCCChHHHHHHhcCCCCCChhHHHHhhh
Q psy17158 140 LKTPLHQCDIYGS-KKAGNLFK-KMLSLGASKPWPEALEVLTGQKNLDAGPMLQYFD 194 (686)
Q Consensus 140 ~~~pLh~Cdiy~s-~~aG~~l~-~~m~~G~S~~W~~~l~~~tg~~~~~a~~ll~Yf~ 194 (686)
+..|=-.|. ...-+-|+ .+=+-|+..+..|.|+.+||++ +|++++++|.+
T Consensus 440 ----~~~~i~~G~f~~i~~WL~e~Ih~~G~~y~~~eLl~~aTGe~-l~~~~~~~YL~ 491 (494)
T PF02074_consen 440 ----LDEQIAKGDFSPIRDWLRENIHQYGSRYTPDELLKKATGEP-LNPEYFIDYLK 491 (494)
T ss_dssp ----HHHHHHTT--HHHHHHHHHHTGGGTTSS-HHHHHHHHHSSS---THHHHHHHH
T ss_pred ----HHHHHHcCChHHHHHHHHHHHHHhccCCCHHHHHHHHhCCC-CCHHHHHHHHH
Confidence 111110010 12222333 3456799999999999999995 99999998864
No 36
>PF00413 Peptidase_M10: Matrixin This Prosite motif covers only the active site.; InterPro: IPR001818 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M10 (clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Sequences having this domain are extracellular metalloproteases, such as collagenase and stromelysin, which degrade the extracellular matrix, are known as matrixins. They are zinc-dependent, calcium-activated proteases synthesised as inactive precursors (zymogens), which are proteolytically cleaved to yield the active enzyme [, ]. All matrixins and related proteins possess 2 domains: an N-terminal domain, and a zinc-binding active site domain. The N-terminal domain peptide, cleaved during the activation step, includes a conserved PRCGVPDV octapeptide, known as the cysteine switch, whose Cys residue chelates the active site zinc atom, rendering the enzyme inactive [, ]. The active enzyme degrades components of the extracellular matrix, playing a role in the initial steps of tissue remodelling during morphogenesis, wound healing, angiogenesis and tumour invasion [, ].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0031012 extracellular matrix; PDB: 1Q3A_C 3V96_B 1HV5_D 1CXV_A 1SRP_A 1FBL_A 1ZVX_A 1JH1_A 1I76_A 2OY4_A ....
Probab=39.03 E-value=18 Score=34.00 Aligned_cols=12 Identities=50% Similarity=0.864 Sum_probs=10.3
Q ss_pred hH-HHHHHHHHHH
Q psy17158 541 DL-TTIHHEMGHI 552 (686)
Q Consensus 541 Df-~tvHHEmGHi 552 (686)
++ .|+.||+||+
T Consensus 104 ~~~~v~~HEiGHa 116 (154)
T PF00413_consen 104 DLQSVAIHEIGHA 116 (154)
T ss_dssp EHHHHHHHHHHHH
T ss_pred hhhhhhhhccccc
Confidence 44 7889999999
No 37
>PRK10911 oligopeptidase A; Provisional
Probab=37.91 E-value=43 Score=40.37 Aligned_cols=41 Identities=24% Similarity=0.421 Sum_probs=36.0
Q ss_pred cHHHHHHHH-HHHhCCCCCChHHHHHHhcCCCCCChhHHHHhh
Q psy17158 152 SKKAGNLFK-KMLSLGASKPWPEALEVLTGQKNLDAGPMLQYF 193 (686)
Q Consensus 152 s~~aG~~l~-~~m~~G~S~~W~~~l~~~tg~~~~~a~~ll~Yf 193 (686)
++++|++++ ++|+.|+|++=.+.++.+.| ++-+.+|||+..
T Consensus 635 ~~~~g~~~r~~iL~~Ggs~~p~~~~~~F~G-R~P~~~all~~~ 676 (680)
T PRK10911 635 NRETGQSFLDNILSRGGSEEPMELFKRFRG-REPQLDAMLEHY 676 (680)
T ss_pred CHHHHHHHHHHHHhCcCCcCHHHHHHHhcC-CCCChHHHHHhc
Confidence 479999997 99999999999999999999 566888898764
No 38
>PF14891 Peptidase_M91: Effector protein
Probab=35.54 E-value=25 Score=34.83 Aligned_cols=19 Identities=21% Similarity=0.074 Sum_probs=15.6
Q ss_pred chHHHHHHHHHHHHHHHHh
Q psy17158 540 DDLTTIHHEMGHIEYDMMY 558 (686)
Q Consensus 540 ~Df~tvHHEmGHi~Y~~~Y 558 (686)
.=++++.|||+|++.+++=
T Consensus 102 ~p~v~L~HEL~HA~~~~~G 120 (174)
T PF14891_consen 102 PPFVVLYHELIHAYDYMNG 120 (174)
T ss_pred HHHHHHHHHHHHHHHHHCC
Confidence 3489999999999888753
No 39
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=35.45 E-value=47 Score=31.73 Aligned_cols=84 Identities=14% Similarity=0.204 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhcCCCCCChHHHhccccccCCCCCcccccccccCCCCCceeEEecCcCC-----cchHHHHHHHHHHHH
Q psy17158 479 KMFKKAEDFFLSLNMSKMTTDFWENSVFVRPKDRDIVCHGSAWDFHDGKTYRIKLCALVG-----EDDLTTIHHEMGHIE 553 (686)
Q Consensus 479 ~Mfk~Ae~FF~SLGL~~mp~~FW~~Sm~~kp~dr~v~ChasAwDf~~~~D~RIkmCt~vt-----~~Df~tvHHEmGHi~ 553 (686)
++|+..++-|-.=.|++.+ =-|++.+-. .-+.|....+. ...|..+...- .+=..|+-|||.|+.
T Consensus 3 ~~f~~~n~~~F~~~L~~~~-i~~~~~~~~----~~G~~~~~~~~-----~~~I~ls~~~~~~~~~~~~~~tL~HEm~H~~ 72 (157)
T PF10263_consen 3 ELFDRFNEEYFGGKLPPIP-ITWSKRMKR----TAGRCRYKRRS-----PCEIRLSPKLLDRNPEEELIDTLLHEMAHAA 72 (157)
T ss_pred HHHHHHHHHHhCCCCCCeE-EEEECCCCC----ceEEEEECCCC-----ceEEEECHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 5666666555555566522 234422222 33456554332 45676665441 234589999999997
Q ss_pred HHHHhcCCCCCCCCCCCchhHhH
Q psy17158 554 YDMMYSQQLPFYQTSPNPGFHEA 576 (686)
Q Consensus 554 Y~~~Y~~qP~~fR~gANpgFhEA 576 (686)
-|+.+ ---+.+-++.|-+.
T Consensus 73 ~~~~~----~~~~~~Hg~~fk~~ 91 (157)
T PF10263_consen 73 AYVFG----GGRRRGHGKEFKQW 91 (157)
T ss_pred hhhcc----CCCCCCCCHHHHHH
Confidence 77776 23345567778765
No 40
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1. A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=33.05 E-value=24 Score=33.84 Aligned_cols=13 Identities=38% Similarity=0.779 Sum_probs=10.5
Q ss_pred chH-HHHHHHHHHH
Q psy17158 540 DDL-TTIHHEMGHI 552 (686)
Q Consensus 540 ~Df-~tvHHEmGHi 552 (686)
.++ .|+.||+||+
T Consensus 102 ~~~~~~~~HEiGHa 115 (156)
T cd04279 102 ENLQAIALHELGHA 115 (156)
T ss_pred hHHHHHHHHHhhhh
Confidence 354 6789999999
No 41
>PRK10280 dipeptidyl carboxypeptidase II; Provisional
Probab=32.71 E-value=59 Score=39.30 Aligned_cols=40 Identities=28% Similarity=0.410 Sum_probs=34.9
Q ss_pred cHHHHHHHHH-HHhCCCCCChHHHHHHhcCCCCCChhHHHHh
Q psy17158 152 SKKAGNLFKK-MLSLGASKPWPEALEVLTGQKNLDAGPMLQY 192 (686)
Q Consensus 152 s~~aG~~l~~-~m~~G~S~~W~~~l~~~tg~~~~~a~~ll~Y 192 (686)
++++|+++|+ +|+.|.|++=.+.++.+.| ++-+.+|||+.
T Consensus 636 n~~~G~~fr~~iL~~GGs~d~~~~~~~FlG-R~P~~~alL~~ 676 (681)
T PRK10280 636 TRENGQRFREAILSRGNSTDLERLYRQWRG-HAPQIMPMLQH 676 (681)
T ss_pred CHHHHHHHHHHHhhcCCCcCHHHHHHHhcC-CCCChHHHHHh
Confidence 4899999954 9999999999999999999 56688888864
No 42
>cd00203 ZnMc Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which are involved in vertebrate development and disease.
Probab=31.03 E-value=86 Score=29.78 Aligned_cols=76 Identities=17% Similarity=0.112 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHh-cCCC--CCChH--HHhccc-cccCC-CCCcccccccccCCCCCceeEEecCc--CCcchHHHHHH
Q psy17158 477 VLKMFKKAEDFFLS-LNMS--KMTTD--FWENSV-FVRPK-DRDIVCHGSAWDFHDGKTYRIKLCAL--VGEDDLTTIHH 547 (686)
Q Consensus 477 ~~~Mfk~Ae~FF~S-LGL~--~mp~~--FW~~Sm-~~kp~-dr~v~ChasAwDf~~~~D~RIkmCt~--vt~~Df~tvHH 547 (686)
.+.+++.|.+.|.+ +++. ....+ =.+-.. +.+.. +.+..|+|..=..|+...-.|..... ....-..|+.|
T Consensus 23 ~~~~v~~a~~~w~~~~~i~f~~~~~~~~~~di~~~~~~~~~~~~~~g~a~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~H 102 (167)
T cd00203 23 IQSLILIAMQIWRDYLNIRFVLVGVEIDKADIAILVTRQDFDGGTGGWAYLGRVCDSLRGVGVLQDNQSGTKEGAQTIAH 102 (167)
T ss_pred HHHHHHHHHHHHHhhhCceEEEeccCCCcCcEEEEeccccCCCCceEEEecCCccCCCCCcEEEecCCcccccchhhHHH
Confidence 45678888888877 5554 22211 011111 12211 22344554332333322122222111 12356789999
Q ss_pred HHHHH
Q psy17158 548 EMGHI 552 (686)
Q Consensus 548 EmGHi 552 (686)
|+||+
T Consensus 103 ElGH~ 107 (167)
T cd00203 103 ELGHA 107 (167)
T ss_pred HHHHH
Confidence 99999
No 43
>cd04268 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_like subfamily. This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.
Probab=29.24 E-value=32 Score=32.86 Aligned_cols=13 Identities=38% Similarity=0.521 Sum_probs=11.4
Q ss_pred chHHHHHHHHHHH
Q psy17158 540 DDLTTIHHEMGHI 552 (686)
Q Consensus 540 ~Df~tvHHEmGHi 552 (686)
.-+.|+.||+||+
T Consensus 93 ~~~~~~~HEiGHa 105 (165)
T cd04268 93 RLRNTAEHELGHA 105 (165)
T ss_pred HHHHHHHHHHHHH
Confidence 4578999999999
No 44
>PF01432 Peptidase_M3: Peptidase family M3 This Prosite motif covers only the active site. This family belongs to family M3 of the peptidase classification.; InterPro: IPR001567 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M3 (clan MA(E)), subfamilies M3A and M3B. The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. The Thimet oligopeptidase family, is a large family of archaeal, bacterial and eukaryotic oligopeptidases that cleave medium sized peptides. The group contains: mitochondrial intermediate peptidase (3.4.24.59 from EC) Neurolysin, mitochondrial precursor, (3.4.24.16 from EC) Thimet oligopeptidase (3.4.24.15 from EC) Dipeptidyl carboxypeptidase (3.4.15.5 from EC) Oligopeptidase A (3.4.24.70 from EC) Oligoendopeptidase F ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QR4_B 3CE2_A 1Y79_1 2H1J_A 2H1N_A 2O36_A 1S4B_P 2O3E_A 1I1I_P.
Probab=28.75 E-value=70 Score=36.10 Aligned_cols=40 Identities=30% Similarity=0.444 Sum_probs=30.7
Q ss_pred HHHHHHH-HHHHhCCCCCChHHHHHHhcCCCCCChhHHHHhh
Q psy17158 153 KKAGNLF-KKMLSLGASKPWPEALEVLTGQKNLDAGPMLQYF 193 (686)
Q Consensus 153 ~~aG~~l-~~~m~~G~S~~W~~~l~~~tg~~~~~a~~ll~Yf 193 (686)
+++|.++ +++|+.|+|++..+.++.+.| +..+.+++++-+
T Consensus 416 ~~~g~~~~~~~L~~Ggs~~~~e~l~~~~g-~~~~~~~~~~~~ 456 (458)
T PF01432_consen 416 RETGRRFYKEFLSPGGSKDPLELLKKFLG-REPSPDAFLKAL 456 (458)
T ss_dssp HHHHHHHHHHHCTTTTSS-HHHHHHHCCS-STTSSHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHHhCC-CCCChHHHHHHc
Confidence 6677655 589999999999999999755 457777777654
No 45
>PF13398 Peptidase_M50B: Peptidase M50B-like
Probab=28.44 E-value=33 Score=34.85 Aligned_cols=17 Identities=35% Similarity=0.450 Sum_probs=13.0
Q ss_pred chHHHHHHHHHHHHHHH
Q psy17158 540 DDLTTIHHEMGHIEYDM 556 (686)
Q Consensus 540 ~Df~tvHHEmGHi~Y~~ 556 (686)
.-+.|+.|||||+.-=.
T Consensus 21 ~~l~t~~HE~gHal~a~ 37 (200)
T PF13398_consen 21 RLLVTFVHELGHALAAL 37 (200)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45679999999995443
No 46
>PF13582 Reprolysin_3: Metallo-peptidase family M12B Reprolysin-like; PDB: 3P24_C.
Probab=28.42 E-value=32 Score=31.35 Aligned_cols=11 Identities=45% Similarity=0.800 Sum_probs=9.9
Q ss_pred HHHHHHHHHHH
Q psy17158 542 LTTIHHEMGHI 552 (686)
Q Consensus 542 f~tvHHEmGHi 552 (686)
..|+.||+||.
T Consensus 108 ~~~~~HEiGH~ 118 (124)
T PF13582_consen 108 VDTFAHEIGHN 118 (124)
T ss_dssp TTHHHHHHHHH
T ss_pred ceEeeehhhHh
Confidence 48999999998
No 47
>cd04278 ZnMc_MMP Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate specification, cell migration, tissue repair, tumorigenesis, gain or loss of tissue-specific functions, and apoptosis. In many instances, they are anchored to cell membranes via trans-membrane domains, and their activity is controlled via TIMPs (tissue inhibitors of metalloproteinases).
Probab=28.42 E-value=26 Score=33.68 Aligned_cols=12 Identities=33% Similarity=0.606 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHH
Q psy17158 541 DLTTIHHEMGHI 552 (686)
Q Consensus 541 Df~tvHHEmGHi 552 (686)
-+.|+.||+||+
T Consensus 107 ~~~~~~HEiGHa 118 (157)
T cd04278 107 LFSVAAHEIGHA 118 (157)
T ss_pred HHHHHHHHhccc
Confidence 467889999999
No 48
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A ....
Probab=27.87 E-value=36 Score=33.67 Aligned_cols=12 Identities=42% Similarity=0.797 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHH
Q psy17158 541 DLTTIHHEMGHI 552 (686)
Q Consensus 541 Df~tvHHEmGHi 552 (686)
+..|+.|||||.
T Consensus 111 ~~~~~aHElGH~ 122 (173)
T PF13574_consen 111 GIDTFAHELGHQ 122 (173)
T ss_dssp HHHHHHHHHHHH
T ss_pred eeeeehhhhHhh
Confidence 678999999999
No 49
>PHA03102 Small T antigen; Reviewed
Probab=27.10 E-value=55 Score=32.38 Aligned_cols=46 Identities=15% Similarity=0.261 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCCccccccccccc
Q psy17158 400 KLWTDIKPLYVELHAYVRRKLLAKYGPEVVFEKEPIPAHLLGNMWA 445 (686)
Q Consensus 400 ~lw~qIkPLY~qLHayVR~kL~~~YG~~~v~~~gpIPAHLLGnmwa 445 (686)
..+++|.-+|+.|...+.+.....+|.+.++..++.|+-.||.+++
T Consensus 44 e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~~~~~f~~~fg 89 (153)
T PHA03102 44 EKMKELNTLYKKFRESVKSLRDLDGEEDSSSEEEDVPSGYVGATFG 89 (153)
T ss_pred HHHHHHHHHHHHHhhHHHhccccccCCcccccccccHHHHhhhhcC
Confidence 4778999999999999999999999988777777778888888775
No 50
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=26.65 E-value=28 Score=34.22 Aligned_cols=18 Identities=56% Similarity=0.746 Sum_probs=14.3
Q ss_pred cchh---hHHHhhhhcccCCC
Q psy17158 117 IPAH---LLVHKALCTEAGQF 134 (686)
Q Consensus 117 ~~~~---~~~~~a~c~~~~~~ 134 (686)
.|.| =.|+||||.+||-.
T Consensus 41 Lp~~aD~NeVLkALc~eAGw~ 61 (150)
T PF05687_consen 41 LPKHADNNEVLKALCREAGWT 61 (150)
T ss_pred CCCcCCHHHHHHHHHHhCCEE
Confidence 3666 57899999999964
No 51
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=25.36 E-value=41 Score=32.38 Aligned_cols=46 Identities=17% Similarity=0.198 Sum_probs=30.1
Q ss_pred ceeEEecCcCCc----chHH-HHHHHHHHHHHHHHhcCCCCCCCCCCCchhHhHHHH
Q psy17158 528 TYRIKLCALVGE----DDLT-TIHHEMGHIEYDMMYSQQLPFYQTSPNPGFHEAVGD 579 (686)
Q Consensus 528 D~RIkmCt~vt~----~Df~-tvHHEmGHi~Y~~~Y~~qP~~fR~gANpgFhEAIgd 579 (686)
+-.|..+...-+ +.+. ||.|||.|+..++. +. . .+-.|.|.+.+..
T Consensus 41 ~~~I~ln~~l~~~~~~~~l~~~l~HEm~H~~~~~~--g~--~--~~Hg~~f~~~~~~ 91 (146)
T smart00731 41 SAEIRLNPKLLTENGRDRLRETLLHELCHAALYLF--GR--G--YGHGDEWKRWMRQ 91 (146)
T ss_pred CCEEEeCHHHHhhccHHHHHhhHHHHHHHHHHHHh--CC--C--CCcCHHHHHHHHH
Confidence 456777776643 4554 89999999988874 21 1 1556788776443
No 52
>cd04277 ZnMc_serralysin_like Zinc-dependent metalloprotease, serralysin_like subfamily. Serralysins and related proteases are important virulence factors in pathogenic bacteria. They may be secreted into the medium via a mechanism found in gram-negative bacteria, that does not require n-terminal signal sequences which are cleaved after the transmembrane translocation. A calcium-binding domain c-terminal to the metalloprotease domain, which contains multiple tandem repeats of a nine-residue motif including the pattern GGxGxD, and which forms a parallel beta roll may be involved in the translocation mechanism and/or substrate binding. Serralysin family members may have a broad spectrum of substrates each, including host immunoglobulins, complement proteins, cell matrix and cytoskeletal proteins, as well as antimicrobial peptides.
Probab=24.64 E-value=42 Score=33.18 Aligned_cols=17 Identities=35% Similarity=0.294 Sum_probs=13.5
Q ss_pred cchHHHHHHHHHHHHHH
Q psy17158 539 EDDLTTIHHEMGHIEYD 555 (686)
Q Consensus 539 ~~Df~tvHHEmGHi~Y~ 555 (686)
...+.|+.||+||+.-.
T Consensus 111 ~~~~~t~~HEiGHaLGL 127 (186)
T cd04277 111 SYGYQTIIHEIGHALGL 127 (186)
T ss_pred hhhHHHHHHHHHHHhcC
Confidence 35689999999999433
No 53
>smart00235 ZnMc Zinc-dependent metalloprotease. Neutral zinc metallopeptidases. This alignment represents a subset of known subfamilies. Highest similarity occurs in the HExxH zinc-binding site/ active site.
Probab=23.81 E-value=57 Score=30.51 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=15.7
Q ss_pred CCceeEEecCcCCcchHHHHHHHHHHH
Q psy17158 526 GKTYRIKLCALVGEDDLTTIHHEMGHI 552 (686)
Q Consensus 526 ~~D~RIkmCt~vt~~Df~tvHHEmGHi 552 (686)
+++.+|-.+ .....+.|+.||+||+
T Consensus 73 ~g~~~~~~~--~~~~~~~~~~HEigHa 97 (140)
T smart00235 73 GGDQHFSLG--NGCINTGVAAHELGHA 97 (140)
T ss_pred CCceEEEcc--CCcCCcccHHHHHHHH
Confidence 455555442 2222456999999999
No 54
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=23.42 E-value=51 Score=28.88 Aligned_cols=28 Identities=25% Similarity=0.263 Sum_probs=18.1
Q ss_pred eeEEecCcCCc-chHHHHHHHHHHHHHHH
Q psy17158 529 YRIKLCALVGE-DDLTTIHHEMGHIEYDM 556 (686)
Q Consensus 529 ~RIkmCt~vt~-~Df~tvHHEmGHi~Y~~ 556 (686)
-.|..+.+.+. ..-.|+.||+||+..-.
T Consensus 29 ~~I~in~~~~~~~~~f~laHELgH~~~~~ 57 (122)
T PF06114_consen 29 PIIFINSNLSPERQRFTLAHELGHILLHH 57 (122)
T ss_dssp TEEEEESSS-HHHHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHHHhhh
Confidence 34555555433 35578999999995554
No 55
>PF13688 Reprolysin_5: Metallo-peptidase family M12; PDB: 2FV5_B 3EWJ_A 3KME_A 3L0T_B 1BKC_E 3G42_D 2I47_D 2FV9_B 3LEA_A 1ZXC_B ....
Probab=22.41 E-value=52 Score=32.46 Aligned_cols=15 Identities=33% Similarity=0.474 Sum_probs=13.1
Q ss_pred CcchHHHHHHHHHHH
Q psy17158 538 GEDDLTTIHHEMGHI 552 (686)
Q Consensus 538 t~~Df~tvHHEmGHi 552 (686)
+.....|+.||+||.
T Consensus 139 ~~~~~~~~AHEiGH~ 153 (196)
T PF13688_consen 139 TYNGAITFAHEIGHN 153 (196)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CCceehhhHHhHHHh
Confidence 456789999999999
No 56
>PF09748 Med10: Transcription factor subunit Med10 of Mediator complex; InterPro: IPR019145 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med10 is one of the protein subunits of the Mediator complex, tethered to Med14 (Rgr1) protein. Med10 specifically mediates basal-level HIS4 transcription via Gcn4. In addition, there is a putative requirement for Med10 in Bas2-mediated transcription []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=21.70 E-value=6.8e+02 Score=23.86 Aligned_cols=54 Identities=11% Similarity=0.167 Sum_probs=35.5
Q ss_pred ChHhHHHHHHHHHHHHHhhhcceeccCCCCCCCCCCccCCChhhHHHHHhcCCCHHHH
Q psy17158 286 RPKDRDIYSSVLSDMQKLFATAKLCPYNASASNDTKCNLDFDPTVINIMATSRDPKEL 343 (686)
Q Consensus 286 ~~e~~~el~~l~s~m~~iYstakvC~~~~~~~~~g~c~l~LepdL~~Ima~SrD~~eL 343 (686)
.+....+++++++.|.++...+.--... .+.-|+..+-+||-+.+-..||++.-
T Consensus 28 ~~~L~~ki~~lv~~L~~l~~~~~~~~~~----~~~~~~~~IP~evl~yID~GrNPDiy 81 (128)
T PF09748_consen 28 QEALNQKINQLVTSLQELDKLAQQTNDP----DSPLQDIQIPLEVLEYIDDGRNPDIY 81 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCC----CcccccCCCCHHHHHHHhCCCCchHH
Confidence 4456788888888888888665431100 11123445556999999999999863
No 57
>PTZ00458 acyl CoA binding protein; Provisional
Probab=21.03 E-value=93 Score=28.18 Aligned_cols=45 Identities=16% Similarity=0.374 Sum_probs=27.7
Q ss_pred CCccCCChhhHHHHHhcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy17158 320 TKCNLDFDPTVINIMATSRDPKELAYYWQEFRNKTGKLMRKKYAKYVQILNEGV 373 (686)
Q Consensus 320 g~c~l~LepdL~~Ima~SrD~~eLk~aW~aWr~~vg~~~r~~y~~~V~L~N~aA 373 (686)
|.|+.. .|.+-.+.+ +.=|.+|..--|-.-..--.+||++.++..
T Consensus 39 G~c~~~-~P~~~d~~~--------raKw~AW~~l~~ms~~eA~~~YI~l~~~l~ 83 (90)
T PTZ00458 39 GNCNIK-EPSMFKYQD--------RKKYEAWKSIENLNREDAKKRYVEIVTELF 83 (90)
T ss_pred CCCCCC-CCCcccHHH--------HHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 567544 355443332 345899997666555556677777777653
No 58
>PLN02791 Nudix hydrolase homolog
Probab=20.97 E-value=1.3e+02 Score=37.02 Aligned_cols=55 Identities=25% Similarity=0.161 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHH--hcC-CCC----CCCCCCCchhHhHHHHHHHHhhcChhHHHHhCCCCC
Q psy17158 542 LTTIHHEMGHIEYDMM--YSQ-QLP----FYQTSPNPGFHEAVGDTIVLSVKTHKHLKRIGLLKE 599 (686)
Q Consensus 542 f~tvHHEmGHi~Y~~~--Y~~-qP~----~fR~gANpgFhEAIgd~iaLSv~TP~hL~~iGLl~~ 599 (686)
+.|+.||+||--=-+. -.+ .|. .| ..-..+++||=+|+++|-..+ +|...|+|++
T Consensus 586 ~~v~lHElgHGsG~~~~~~~~g~~~t~~~~l-~~~~s~lEE~RAD~vgLy~l~--~l~~~g~l~~ 647 (770)
T PLN02791 586 THTICHECCHGIGPHTITLPDGQKSTVRLEL-QEVHSALEEAKADIVGLWALH--FLIDKGLLSK 647 (770)
T ss_pred HHHHHHHhhccccccceecCCCCcCcHHHHH-HHhcchHHHHHHHHHHHHHHH--HhhhcCCCCc
Confidence 6789999999711111 000 111 12 223457899999999998655 8888899964
No 59
>cd04270 ZnMc_TACE_like Zinc-dependent metalloprotease; TACE_like subfamily. TACE, the tumor-necrosis factor-alpha converting enzyme, releases soluble TNF-alpha from transmembrane pro-TNF-alpha.
Probab=20.64 E-value=53 Score=34.43 Aligned_cols=10 Identities=40% Similarity=0.650 Sum_probs=9.5
Q ss_pred HHHHHHHHHH
Q psy17158 543 TTIHHEMGHI 552 (686)
Q Consensus 543 ~tvHHEmGHi 552 (686)
.|+.|||||.
T Consensus 169 ~t~AHElGHn 178 (244)
T cd04270 169 LVTAHELGHN 178 (244)
T ss_pred HHHHHHHHHh
Confidence 7899999999
No 60
>PF07841 DM4_12: DM4/DM12 family; InterPro: IPR006631 This domain of unknown function is found in primarily in Drosophila melanogaster (Fruit fly) proteins of unknown function.
Probab=20.61 E-value=86 Score=27.22 Aligned_cols=38 Identities=21% Similarity=0.328 Sum_probs=30.0
Q ss_pred hHHHhhhhcccCCCCCCCCCCCCcccccCCCcHHHHHHHHHHHhCCCCCCh
Q psy17158 121 LLVHKALCTEAGQFDPKNPLKTPLHQCDIYGSKKAGNLFKKMLSLGASKPW 171 (686)
Q Consensus 121 ~~~~~a~c~~~~~~~~~~~~~~pLh~Cdiy~s~~aG~~l~~~m~~G~S~~W 171 (686)
-=|+||+|+++.. |++ -++.-.|++|+-++.+.+|..=
T Consensus 21 ~CllRaICE~~~~---------~~~----~~~gl~~ell~~ift~~~~~~~ 58 (82)
T PF07841_consen 21 ACLLRAICEAAQR---------PLP----EHNGLLGELLHIIFTPSSSDDE 58 (82)
T ss_pred hhHHHHHHHHhhc---------ccc----ccCcHHHHHHHHhcCCCccccc
Confidence 4589999999765 554 4667889999999998887655
No 61
>cd04267 ZnMc_ADAM_like Zinc-dependent metalloprotease, ADAM_like or reprolysin_like subgroup. The adamalysin_like or ADAM family of metalloproteases contains proteolytic domains from snake venoms, proteases from the mammalian reproductive tract, and the tumor necrosis factor alpha convertase, TACE. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=20.61 E-value=84 Score=31.02 Aligned_cols=15 Identities=33% Similarity=0.357 Sum_probs=12.4
Q ss_pred CcchHHHHHHHHHHH
Q psy17158 538 GEDDLTTIHHEMGHI 552 (686)
Q Consensus 538 t~~Df~tvHHEmGHi 552 (686)
+..-..++.||+||.
T Consensus 130 ~~~~~~~~aHElGH~ 144 (192)
T cd04267 130 TLLTALTMAHELGHN 144 (192)
T ss_pred ceeehhhhhhhHHhh
Confidence 355667999999999
No 62
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=20.48 E-value=82 Score=28.97 Aligned_cols=20 Identities=15% Similarity=0.645 Sum_probs=16.2
Q ss_pred HHhhhHHHHHHHHHHhhhCC
Q psy17158 190 LQYFDPLYKWLKEENRKTGT 209 (686)
Q Consensus 190 l~Yf~PL~~WL~~~N~k~~~ 209 (686)
.+||+|+.+||+.+-++.+.
T Consensus 24 ~~Fy~Pi~~wl~~Yl~~~~~ 43 (99)
T PF09345_consen 24 FAFYQPILDWLEAYLAEPNK 43 (99)
T ss_pred HHHHHHHHHHHHHHHhCCCC
Confidence 48999999999998765333
No 63
>PF02031 Peptidase_M7: Streptomyces extracellular neutral proteinase (M7) family; InterPro: IPR000013 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M7 (snapalysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. With a molecular weight of around 16kDa, Streptomyces extracellular neutral protease is one of the smallest known proteases []; it is capable of hydrolysing milk proteins []. The enzyme is synthesised as a proenzyme with a signal peptide, a propeptide and an active domain that contains the conserved HEXXH motif characteristic of metalloproteases. Although family M7 shows active site sequence similarity to other members, it differs in one major respect: the third zinc ligand appears to be an aspartate residue rather than the usual histidine.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0005576 extracellular region; PDB: 1C7K_A 1KUH_A.
Probab=20.30 E-value=56 Score=31.65 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=15.7
Q ss_pred ceeEEecCcCCc--chHHHHHHHHHHH
Q psy17158 528 TYRIKLCALVGE--DDLTTIHHEMGHI 552 (686)
Q Consensus 528 D~RIkmCt~vt~--~Df~tvHHEmGHi 552 (686)
.-+|.+-...+. +-...+.||+|||
T Consensus 62 ~G~I~l~~~~~qgy~~~RIaaHE~GHi 88 (132)
T PF02031_consen 62 SGYIFLDYQQNQGYNSTRIAAHELGHI 88 (132)
T ss_dssp -EEEEEEHHHHHHS-HHHHHHHHHHHH
T ss_pred cEEEEechHHhhCCccceeeeehhccc
Confidence 445777654322 2356779999999
No 64
>PRK05457 heat shock protein HtpX; Provisional
Probab=20.13 E-value=1.4e+02 Score=32.21 Aligned_cols=63 Identities=11% Similarity=0.092 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhcCCCCCChHHHhccccccCCCCCcccccccccCCCCCceeEEecC----cCCcchHH-HHHHHHHHH
Q psy17158 479 KMFKKAEDFFLSLNMSKMTTDFWENSVFVRPKDRDIVCHGSAWDFHDGKTYRIKLCA----LVGEDDLT-TIHHEMGHI 552 (686)
Q Consensus 479 ~Mfk~Ae~FF~SLGL~~mp~~FW~~Sm~~kp~dr~v~ChasAwDf~~~~D~RIkmCt----~vt~~Df~-tvHHEmGHi 552 (686)
.+++..++.-...|++ +|+=+.- +.+ ..-|.|.-++. .+-+|...+ ..+.+.+. ++.||+||+
T Consensus 78 ~L~~~v~~la~~~g~p-~p~v~v~------~~~---~~NAfa~G~~~-~~~~V~vt~gLl~~L~~~El~aVlAHElgHi 145 (284)
T PRK05457 78 WLVETVARQARQAGIG-MPEVAIY------HSP---EINAFATGASK-NNSLVAVSTGLLQNMSRDEVEAVLAHEISHI 145 (284)
T ss_pred HHHHHHHHHHHhCCCC-CCCEEEE------eCC---CceEEEecCCC-CCeEEEeehHHhhhCCHHHHHHHHHHHHHHH
Confidence 4667777788889997 6642211 111 12222322221 122233322 13555554 569999999
No 65
>cd04271 ZnMc_ADAM_fungal Zinc-dependent metalloprotease, ADAM_fungal subgroup. The adamalysin_like or ADAM (A Disintegrin And Metalloprotease) family of metalloproteases are integral membrane proteases acting on a variety of extracellular targets. They are involved in shedding soluble peptides or proteins from the cell surface. This subfamily contains fungal ADAMs, whose precise function has yet to be determined.
Probab=20.06 E-value=35 Score=35.45 Aligned_cols=27 Identities=15% Similarity=0.182 Sum_probs=18.3
Q ss_pred chHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q psy17158 392 PHFKETIEKLWTDIKPLYV-ELHAYVRRKL 420 (686)
Q Consensus 392 ~~~~~~~e~lw~qIkPLY~-qLHayVR~kL 420 (686)
+++...+-.+.+-|--+|+ .|+ ||-.|
T Consensus 21 ~~~~~~v~~ivN~vn~~Y~~~~n--I~v~L 48 (228)
T cd04271 21 EEARRNILNNVNSASQLYESSFN--ISLGL 48 (228)
T ss_pred HHHHHHHHHHHHHHHHHhhCcce--EEEEE
Confidence 4566777777778888888 564 54444
Done!