RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17158
(686 letters)
>2x96_A Angiotensin converting enzyme; hydrolase, ACE inhibitor, zinc
metallopeptidase; HET: RX3 EPE NAG BMA MAN; 1.85A
{Drosophila melanogaster} PDB: 2x8z_A* 2x90_A* 2x91_A*
2x8y_A* 2x97_A* 2xhm_A* 3zqz_A* 2x94_A* 2x92_A* 2x93_A*
2x95_A* 1j36_A* 1j37_A* 1j38_A
Length = 598
Score = 450 bits (1157), Expect = e-151
Identities = 182/401 (45%), Positives = 263/401 (65%), Gaps = 6/401 (1%)
Query: 287 PKDRDIYSSVLSDMQKLFATAKLCPYNASASNDTKCNLDFDPTVINIMATSRDPKELAYY 346
D LS M+ FA K+C Y + TKC+L DP + +++ SRD +ELAYY
Sbjct: 94 EDDYAELLDTLSAMESNFAKVKVCDYK----DSTKCDLALDPEIEEVISKSRDHEELAYY 149
Query: 347 WQEFRNKTGKLMRKKYAKYVQILNEGVRLSHYKDAGDSWIALYNQPHFKETIEKLWTDIK 406
W+EF +K G +R ++ +YV++ + +L+++ ++W+ Y F++ +E ++ DI+
Sbjct: 150 WREFYDKAGTAVRSQFERYVELNTKAAKLNNFTSGAEAWLDEYEDDTFEQQLEDIFADIR 209
Query: 407 PLYVELHAYVRRKLLAKYGPEVVFEKEPIPAHLLGNMWAQSWSNIYDITQPYPDIQEPDI 466
PLY ++H YVR +L YG VV E PIP HLLGNMWAQ WS I DI P+P+ D+
Sbjct: 210 PLYQQIHGYVRFRLRKHYGDAVVSETGPIPMHLLGNMWAQQWSEIADIVSPFPEKPLVDV 269
Query: 467 TKELQRQNYTVLKMFKKAEDFFLSLNMSKMTTDFWENSVFVRPKD-RDIVCHGSAWDFHD 525
+ E+++Q YT LKMF+ +DFF S+N++K+ DFW+ S+ +P D RD+VCH SAWDF+
Sbjct: 270 SAEMEKQGYTPLKMFQMGDDFFTSMNLTKLPQDFWDKSIIEKPTDGRDLVCHASAWDFYL 329
Query: 526 GKTYRIKLCALVGEDDLTTIHHEMGHIEYDMMYSQQLPFYQTSPNPGFHEAVGDTIVLSV 585
RIK C V +D L T+HHE+GHI+Y + Y Q Y+T NPGFHEAVGD + LSV
Sbjct: 330 TDDVRIKQCTRVTQDQLFTVHHELGHIQYFLQYQHQPFVYRTGANPGFHEAVGDVLSLSV 389
Query: 586 KTHKHLKRIGLLKEDFKDDPESTINELFKFGLERLTFPPFGYLTDLWRWSVFNGSIPEDQ 645
T KHL++IGLL +D+ D E+ IN+LF L+++ F PF + D +RWS+F G + +
Sbjct: 390 STPKHLEKIGLL-KDYVRDDEARINQLFLTALDKIVFLPFAFTMDKYRWSLFRGEVDKAN 448
Query: 646 YETAWWKLREEYQGVQPPMPRSEDDFDPGSKYHIPNNVEYL 686
+ A+WKLR+EY G++PP+ RSE DFD +KYHI +VEYL
Sbjct: 449 WNCAFWKLRDEYSGIEPPVVRSEKDFDAPAKYHISADVEYL 489
Score = 123 bits (310), Expect = 9e-30
Identities = 44/93 (47%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 123 VHKALCTEAGQFDPKNPLKTPLHQCDIYGSKKAGNLFKKMLSLGASKPWPEALEVLTGQK 182
+K+ C +AGQ+DP N + PL CDIYGS AG F MLS+GASKPWP+ALE G++
Sbjct: 501 FYKSACIKAGQYDPDNV-ELPLDNCDIYGSAAAGAAFHNMLSMGASKPWPDALEAFNGER 559
Query: 183 NLDAGPMLQYFDPLYKWLKEENRKTGTFVGWEK 215
+ + +YF+PL WL+ EN K +GW
Sbjct: 560 IMSGKAIAEYFEPLRVWLEAENIKNNVHIGWTT 592
Score = 100 bits (249), Expect = 4e-22
Identities = 36/71 (50%), Positives = 52/71 (73%)
Query: 219 GNMWAQSWSNIYDITQPYPDKQEPDITKELQRQGYTVLKMFKKAEDFFLSLNMSKMTTDF 278
GNMWAQ WS I DI P+P+K D++ E+++QGYT LKMF+ +DFF S+N++K+ DF
Sbjct: 244 GNMWAQQWSEIADIVSPFPEKPLVDVSAEMEKQGYTPLKMFQMGDDFFTSMNLTKLPQDF 303
Query: 279 WENSVFVRPKD 289
W+ S+ +P D
Sbjct: 304 WDKSIIEKPTD 314
Score = 77.6 bits (190), Expect = 5e-15
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 60 YKDAGDSWIALYNQPHFKETIEKLWTDIKPLYLELHAYVRRKLLAKYGPEVVFEKEPIPA 119
+ ++W+ Y F++ +E ++ DI+PLY ++H YVR +L YG VV E PIP
Sbjct: 181 FTSGAEAWLDEYEDDTFEQQLEDIFADIRPLYQQIHGYVRFRLRKHYGDAVVSETGPIPM 240
Query: 120 HLL 122
HLL
Sbjct: 241 HLL 243
Score = 72.5 bits (177), Expect = 2e-13
Identities = 33/57 (57%), Positives = 41/57 (71%), Gaps = 1/57 (1%)
Query: 2 PRSEDDFDPGSKYHIPNNVEYLRYFVSYISQFQFHKALCTEAGQFDPKNPLKTPLHQ 58
RSE DFD +KYHI +VEYLRY VS+I QFQF+K+ C +AGQ+DP N + PL
Sbjct: 468 VRSEKDFDAPAKYHISADVEYLRYLVSFIIQFQFYKSACIKAGQYDPDNV-ELPLDN 523
>1uze_A Angiotensin converting enzyme; metalloprotease, inhibitor,
enalaprilat, zinc dependant peptidase, anti-hypertensive
drug; HET: EAL; 1.82A {Homo sapiens} SCOP: d.92.1.5 PDB:
1o8a_A* 1o86_A* 1uzf_A* 2oc2_A* 2ydm_A* 2iux_A* 2iul_A*
2xy9_A* 3bkk_A* 3bkl_A* 3l3n_A*
Length = 589
Score = 441 bits (1135), Expect = e-147
Identities = 180/401 (44%), Positives = 263/401 (65%), Gaps = 9/401 (2%)
Query: 287 PKDRDIYSSVLSDMQKLFATAKLCPYNASASNDTKCNLDFDPTVINIMATSRDPKELAYY 346
++ + Y+ +L DM+ ++ A +C N L +P + N+MATSR ++L +
Sbjct: 93 AQELEEYNKILLDMETTYSVATVCHPN-------GSCLQLEPDLTNVMATSRKYEDLLWA 145
Query: 347 WQEFRNKTGKLMRKKYAKYVQILNEGVRLSHYKDAGDSWIALYNQPHFKETIEKLWTDIK 406
W+ +R+K G+ + + Y KYV+++N+ RL+ Y DAGDSW ++Y P ++ +E+L+ +++
Sbjct: 146 WEGWRDKAGRAILQFYPKYVELINQAARLNGYVDAGDSWRSMYETPSLEQDLERLFQELQ 205
Query: 407 PLYVELHAYVRRKLLAKYGPEVVFEKEPIPAHLLGNMWAQSWSNIYDITQPYPDIQEPDI 466
PLY+ LHAYVRR L YG + + + PIPAHLLGNMWAQ+WSNIYD+ P+P D
Sbjct: 206 PLYLNLHAYVRRALHRHYGAQHINLEGPIPAHLLGNMWAQTWSNIYDLVVPFPSAPSMDT 265
Query: 467 TKELQRQNYTVLKMFKKAEDFFLSLNMSKMTTDFWENSVFVRPKD-RDIVCHGSAWDFHD 525
T+ + +Q +T +MFK+A+DFF SL + + +FW S+ +P D R++VCH SAWDF++
Sbjct: 266 TEAMLKQGWTPRRMFKEADDFFTSLGLLPVPPEFWNKSMLEKPTDGREVVCHASAWDFYN 325
Query: 526 GKTYRIKLCALVGEDDLTTIHHEMGHIEYDMMYSQQLPFYQTSPNPGFHEAVGDTIVLSV 585
GK +RIK C V +DL HHEMGHI+Y M Y + NPGFHEA+GD + LSV
Sbjct: 326 GKDFRIKQCTTVNLEDLVVAHHEMGHIQYFMQYKDLPVALREGANPGFHEAIGDVLALSV 385
Query: 586 KTHKHLKRIGLLKEDFKDDPESTINELFKFGLERLTFPPFGYLTDLWRWSVFNGSIPEDQ 645
T KHL + LL + D E IN L K L+++ F PF YL D WRW VF+GSI ++
Sbjct: 386 STPKHLHSLNLLSSEGGSD-EHDINFLMKMALDKIAFIPFSYLVDQWRWRVFDGSITKEN 444
Query: 646 YETAWWKLREEYQGVQPPMPRSEDDFDPGSKYHIPNNVEYL 686
Y WW LR +YQG+ PP+PR++ DFDPG+K+HIP++V Y+
Sbjct: 445 YNQEWWSLRLKYQGLCPPVPRTQGDFDPGAKFHIPSSVPYI 485
Score = 113 bits (283), Expect = 2e-26
Identities = 43/93 (46%), Positives = 56/93 (60%), Gaps = 7/93 (7%)
Query: 123 VHKALCTEAGQFDPKNPLKTPLHQCDIYGSKKAGNLFKKMLSLGASKPWPEALEVLTGQK 182
H+ALC AG P LH+CDIY SK+AG + LG S+PWPEA++++TGQ
Sbjct: 497 FHEALCQAAGHTGP-------LHKCDIYQSKEAGQRLATAMKLGFSRPWPEAMQLITGQP 549
Query: 183 NLDAGPMLQYFDPLYKWLKEENRKTGTFVGWEK 215
N+ A ML YF PL WL+ EN G +GW +
Sbjct: 550 NMSASAMLSYFKPLLDWLRTENELHGEKLGWPQ 582
Score = 94.9 bits (235), Expect = 2e-20
Identities = 33/72 (45%), Positives = 48/72 (66%)
Query: 219 GNMWAQSWSNIYDITQPYPDKQEPDITKELQRQGYTVLKMFKKAEDFFLSLNMSKMTTDF 278
GNMWAQ+WSNIYD+ P+P D T+ + +QG+T +MFK+A+DFF SL + + +F
Sbjct: 240 GNMWAQTWSNIYDLVVPFPSAPSMDTTEAMLKQGWTPRRMFKEADDFFTSLGLLPVPPEF 299
Query: 279 WENSVFVRPKDR 290
W S+ +P D
Sbjct: 300 WNKSMLEKPTDG 311
Score = 76.8 bits (188), Expect = 8e-15
Identities = 32/63 (50%), Positives = 45/63 (71%)
Query: 60 YKDAGDSWIALYNQPHFKETIEKLWTDIKPLYLELHAYVRRKLLAKYGPEVVFEKEPIPA 119
Y DAGDSW ++Y P ++ +E+L+ +++PLYL LHAYVRR L YG + + + PIPA
Sbjct: 177 YVDAGDSWRSMYETPSLEQDLERLFQELQPLYLNLHAYVRRALHRHYGAQHINLEGPIPA 236
Query: 120 HLL 122
HLL
Sbjct: 237 HLL 239
Score = 66.0 bits (160), Expect = 2e-11
Identities = 30/47 (63%), Positives = 39/47 (82%)
Query: 2 PRSEDDFDPGSKYHIPNNVEYLRYFVSYISQFQFHKALCTEAGQFDP 48
PR++ DFDPG+K+HIP++V Y+RYFVS+I QFQFH+ALC AG P
Sbjct: 464 PRTQGDFDPGAKFHIPSSVPYIRYFVSFIIQFQFHEALCQAAGHTGP 510
>3nxq_A Angiotensin-converting enzyme; dicarboxy zinc metallopeptidase,
hydrolase, hydrolase-hydrol inhibitor complex; HET: RX4
NAG FUC BMA P6G PG4; 1.99A {Homo sapiens} PDB: 2xyd_A*
2c6n_A* 2c6f_A*
Length = 629
Score = 437 bits (1125), Expect = e-146
Identities = 178/462 (38%), Positives = 262/462 (56%), Gaps = 8/462 (1%)
Query: 227 SNIYDITQPYPDKQEPDITKELQRQGYTVLKMFKKAEDFFLSLNMSKMTTDFWENSVFVR 286
+NI ++ + + G ++++ F + ++
Sbjct: 44 TNITAENARRQEEAALLSQEFAEAWGQKAKELYEPIWQQFTDPQLRRIIGAVRTLGSANL 103
Query: 287 PKD-RDIYSSVLSDMQKLFATAKLCPYNASASNDTKCNLDFDPTVINIMATSRDPKELAY 345
P R Y+++LS M ++++TAK+C C DP + NI+A+SR L +
Sbjct: 104 PLAKRQQYNALLSQMSRIYSTAKVCLPQ----KTATC-WSLDPDLTNILASSRSYAMLLF 158
Query: 346 YWQEFRNKTGKLMRKKYAKYVQILNEGVRLSHYKDAGDSWIALYNQPHFKETIEKLWTDI 405
W+ + N G ++ Y + + NE + + D G W + YN P F++ +E L+ +
Sbjct: 159 AWEGWHNAAGIPLKPLYEDFTALSNEAYKQDGFTDTGAYWRSWYNSPTFEDDLEHLYQQL 218
Query: 406 KPLYVELHAYVRRKLLAKYGPEVVFEKEPIPAHLLGNMWAQSWSNIYDITQPYPDIQEPD 465
+PLY+ LHA+VRR L +YG + + PIPAHLLG+MWAQSW NIYD+ P+PD D
Sbjct: 219 EPLYLNLHAFVRRALHRRYGDRYINLRGPIPAHLLGDMWAQSWENIYDMVVPFPDKPNLD 278
Query: 466 ITKELQRQNYTVLKMFKKAEDFFLSLNMSKMTTDFWENSVFVRP-KDRDIVCHGSAWDFH 524
+T + +Q + MF+ AE+FF SL +S M +FWE S+ +P R++VCH SAWDF+
Sbjct: 279 VTSTMLQQGWQATHMFRVAEEFFTSLELSPMPPEFWEGSMLEKPADGREVVCHASAWDFY 338
Query: 525 DGKTYRIKLCALVGEDDLTTIHHEMGHIEYDMMYSQQLPFYQTSPNPGFHEAVGDTIVLS 584
+ K +RIK C V D L+T+HHEMGHI+Y + Y + NPGFHEA+GD + LS
Sbjct: 339 NRKDFRIKQCTRVTMDQLSTVHHEMGHIQYYLQYKDLPVSLRRGANPGFHEAIGDVLALS 398
Query: 585 VKTHKHLKRIGLLKEDFKDDPESTINELFKFGLERLTFPPFGYLTDLWRWSVFNGSIPED 644
V T +HL +IGLL +D ES IN L K LE++ F PFGYL D WRW VF+G P
Sbjct: 399 VSTPEHLHKIGLLDR-VTNDTESDINYLLKMALEKIAFLPFGYLVDQWRWGVFSGRTPPS 457
Query: 645 QYETAWWKLREEYQGVQPPMPRSEDDFDPGSKYHIPNNVEYL 686
+Y WW LR +YQG+ PP+ R+E FD G+K+H+PN Y+
Sbjct: 458 RYNFDWWYLRTKYQGICPPVTRNETHFDAGAKFHVPNVTPYI 499
Score = 109 bits (273), Expect = 4e-25
Identities = 42/93 (45%), Positives = 60/93 (64%), Gaps = 7/93 (7%)
Query: 123 VHKALCTEAGQFDPKNPLKTPLHQCDIYGSKKAGNLFKKMLSLGASKPWPEALEVLTGQK 182
H+ALC EAG + PLHQCDIY S KAG +K+L G+S+PW E L+ + G
Sbjct: 511 FHEALCKEAGY-------EGPLHQCDIYRSTKAGAKLRKVLRAGSSRPWQEVLKDMVGLD 563
Query: 183 NLDAGPMLQYFDPLYKWLKEENRKTGTFVGWEK 215
LDA P+L+YF + +WL+E+N++ G +GW +
Sbjct: 564 ALDAQPLLKYFQLVTQWLQEQNQQNGEVLGWPE 596
Score = 90.3 bits (223), Expect = 6e-19
Identities = 35/73 (47%), Positives = 48/73 (65%)
Query: 219 GNMWAQSWSNIYDITQPYPDKQEPDITKELQRQGYTVLKMFKKAEDFFLSLNMSKMTTDF 278
G+MWAQSW NIYD+ P+PDK D+T + +QG+ MF+ AE+FF SL +S M +F
Sbjct: 254 GDMWAQSWENIYDMVVPFPDKPNLDVTSTMLQQGWQATHMFRVAEEFFTSLELSPMPPEF 313
Query: 279 WENSVFVRPKDRD 291
WE S+ +P D
Sbjct: 314 WEGSMLEKPADGR 326
Score = 76.4 bits (187), Expect = 1e-14
Identities = 29/63 (46%), Positives = 41/63 (65%)
Query: 60 YKDAGDSWIALYNQPHFKETIEKLWTDIKPLYLELHAYVRRKLLAKYGPEVVFEKEPIPA 119
+ D G W + YN P F++ +E L+ ++PLYL LHA+VRR L +YG + + PIPA
Sbjct: 191 FTDTGAYWRSWYNSPTFEDDLEHLYQQLEPLYLNLHAFVRRALHRRYGDRYINLRGPIPA 250
Query: 120 HLL 122
HLL
Sbjct: 251 HLL 253
Score = 65.3 bits (158), Expect = 4e-11
Identities = 27/47 (57%), Positives = 35/47 (74%)
Query: 2 PRSEDDFDPGSKYHIPNNVEYLRYFVSYISQFQFHKALCTEAGQFDP 48
R+E FD G+K+H+PN Y+RYFVS++ QFQFH+ALC EAG P
Sbjct: 478 TRNETHFDAGAKFHVPNVTPYIRYFVSFVLQFQFHEALCKEAGYEGP 524
>1r42_A Angiotensin I converting enzyme 2; zinc metallopeptidase domain, Na
open conformation, chloride ION binding site; HET: NAG;
2.20A {Homo sapiens} SCOP: d.92.1.5 PDB: 1r4l_A* 3sci_A
3scj_A 2ajf_A* 3kbh_A* 3d0g_A* 3d0h_A* 3d0i_A* 3sck_A
3scl_A
Length = 615
Score = 420 bits (1080), Expect = e-139
Identities = 160/411 (38%), Positives = 231/411 (56%), Gaps = 18/411 (4%)
Query: 287 PKDRDIYSSVLSDMQKLFATAKLCPYNASASNDTKCNLDFDPTVINIMATSRDPKELAYY 346
+++L+ M +++T K+C + N +C L +P + IMA S D E +
Sbjct: 110 EDKSKRLNTILNTMSTIYSTGKVCNPD----NPQEC-LLLEPGLNEIMANSLDYNERLWA 164
Query: 347 WQEFRNKTGKLMRKKYAKYVQILNEGVRLSHYKDAGDSWIALYNQPH----------FKE 396
W+ +R++ GK +R Y +YV + NE R +HY+D GD W Y E
Sbjct: 165 WESWRSEVGKQLRPLYEEYVVLKNEMARANHYEDYGDYWRGDYEVNGVDGYDYSRGQLIE 224
Query: 397 TIEKLWTDIKPLYVELHAYVRRKLLAKYGPEVVFEKEPIPAHLLGNMWAQSWSNIYDITQ 456
+E + +IKPLY LHAYVR KL+ Y + +PAHLLG+MW + W+N+Y +T
Sbjct: 225 DVEHTFEEIKPLYEHLHAYVRAKLMNAYP-SYISPIGCLPAHLLGDMWGRFWTNLYSLTV 283
Query: 457 PYPDIQEPDITKELQRQNYTVLKMFKKAEDFFLSLNMSKMTTDFWENSVFVRPKD-RDIV 515
P+ D+T + Q + ++FK+AE FF+S+ + MT FWENS+ P + + V
Sbjct: 284 PFGQKPNIDVTDAMVDQAWDAQRIFKEAEKFFVSVGLPNMTQGFWENSMLTDPGNVQKAV 343
Query: 516 CHGSAWDFHDGKTYRIKLCALVGEDDLTTIHHEMGHIEYDMMYSQQLPFYQTSPNPGFHE 575
CH +AWD G +RI +C V DD T HHEMGHI+YDM Y+ Q + N GFHE
Sbjct: 344 CHPTAWDLGKG-DFRILMCTKVTMDDFLTAHHEMGHIQYDMAYAAQPFLLRNGANEGFHE 402
Query: 576 AVGDTIVLSVKTHKHLKRIGLLKEDFKDDPESTINELFKFGLERLTFPPFGYLTDLWRWS 635
AVG+ + LS T KHLK IGLL DF++D E+ IN L K L + PF Y+ + WRW
Sbjct: 403 AVGEIMSLSAATPKHLKSIGLLSPDFQEDNETEINFLLKQALTIVGTLPFTYMLEKWRWM 462
Query: 636 VFNGSIPEDQYETAWWKLREEYQGVQPPMPRSEDDFDPGSKYHIPNNVEYL 686
VF G IP+DQ+ WW+++ E GV P+P E DP S +H+ N+ ++
Sbjct: 463 VFKGEIPKDQWMKKWWEMKREIVGVVEPVPHDETYCDPASLFHVSNDYSFI 513
Score = 105 bits (263), Expect = 7e-24
Identities = 40/92 (43%), Positives = 54/92 (58%), Gaps = 9/92 (9%)
Query: 123 VHKALCTEAGQFDPKNPLKTPLHQCDIYGSKKAGNLFKKMLSLGASKPWPEALEVLTGQK 182
+ALC A P LH+CDI S +AG ML LG S+PW ALE + G K
Sbjct: 525 FQEALCQAAKHEGP-------LHKCDISNSTEAGQKLFNMLRLGKSEPWTLALENVVGAK 577
Query: 183 NLDAGPMLQYFDPLYKWLKEENRKTGTFVGWE 214
N++ P+L YF+PL+ WLK++N+ +FVGW
Sbjct: 578 NMNVRPLLNYFEPLFTWLKDQNK--NSFVGWS 607
Score = 94.9 bits (235), Expect = 2e-20
Identities = 27/73 (36%), Positives = 44/73 (60%)
Query: 219 GNMWAQSWSNIYDITQPYPDKQEPDITKELQRQGYTVLKMFKKAEDFFLSLNMSKMTTDF 278
G+MW + W+N+Y +T P+ K D+T + Q + ++FK+AE FF+S+ + MT F
Sbjct: 268 GDMWGRFWTNLYSLTVPFGQKPNIDVTDAMVDQAWDAQRIFKEAEKFFVSVGLPNMTQGF 327
Query: 279 WENSVFVRPKDRD 291
WENS+ P +
Sbjct: 328 WENSMLTDPGNVQ 340
Score = 63.7 bits (154), Expect = 1e-10
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 1 MPRSEDDFDPGSKYHIPNNVEYLRYFVSYISQFQFHKALCTEAGQFDP 48
+P E DP S +H+ N+ ++RY+ + QFQF +ALC A P
Sbjct: 491 VPHDETYCDPASLFHVSNDYSFIRYYTRTLYQFQFQEALCQAAKHEGP 538
Score = 63.4 bits (153), Expect = 1e-10
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 60 YKDAGDSWIALYNQPH----------FKETIEKLWTDIKPLYLELHAYVRRKLLAKYGPE 109
Y+D GD W Y E +E + +IKPLY LHAYVR KL+ Y
Sbjct: 196 YEDYGDYWRGDYEVNGVDGYDYSRGQLIEDVEHTFEEIKPLYEHLHAYVRAKLMNAYP-S 254
Query: 110 VVFEKEPIPAHLL 122
+ +PAHLL
Sbjct: 255 YISPIGCLPAHLL 267
>1ka2_A M32 carboxypeptidase; hexxh motif, M32 family, metallopeptidase;
2.20A {Pyrococcus furiosus} SCOP: d.92.1.5 PDB: 1k9x_A
1ka4_A
Length = 499
Score = 66.4 bits (161), Expect = 1e-11
Identities = 38/362 (10%), Positives = 94/362 (25%), Gaps = 47/362 (12%)
Query: 349 EFRNKTGKLMRKKYAKYVQILNEGVR--LSHYKDAGDSWIALYNQPHFKETIEKLWTDIK 406
E+ +++ + E +R A +W + ++ +
Sbjct: 81 EYERGIVRVLDRSIRIARAFPPEFIREVSETTSLATKAWEEAKAKDD--------FSKFE 132
Query: 407 PLYVELHAYVRRKLLAKYGPEVVFEKEP------IPAHLLGNMWAQSWSNIYDITQPYPD 460
P ++ + +R E ++ + + M+ + + +
Sbjct: 133 PWLDKIISLAKRAAEYLGYEEEPYDALLDLYEEGLRTRDVEKMFEVLEKKLKPLLDKILE 192
Query: 461 IQEPDITKELQRQNYTVLKMFKKAEDFFLSLNMSKMTTDFWENSVFVRPKDRDIVCHGSA 520
+ L+++ Y M + + R V
Sbjct: 193 EGKVPREHPLEKEKYEREWMERVNLWILQKFGF-----PLGT-------RARLDVSAHPF 240
Query: 521 WDFHDGKTYRIKLCALVGE--DDLTTIHHEMGHIEYDMMYSQQLPFY--QTSPNPGFHEA 576
+ RI + + + HE GH Y++ ++ F + G HE+
Sbjct: 241 TTEFGIRDVRITTRYEGYDFRRTILSTVHEFGHALYELQQDERFMFTPIAGGVSLGIHES 300
Query: 577 VGDTIVLSVKTHKHLKR--IGLLKEDFKDDPESTINELFKF------GLER-----LTFP 623
+ K +LKE+ T +++ + R +T+
Sbjct: 301 QSRFWENIIGRSKEFVELIYPVLKENLPFMSNYTPEDVYLYFNIVRPDFIRTEADVVTYN 360
Query: 624 PFGYLTDLWRWSVFNGSIPEDQYETAWWKLREEYQGVQPPMPRSEDDFDPGSKYHIPNNV 683
L + + I W E G++P + + +
Sbjct: 361 FHILLRFKLERLMVSEEIKAKDLPEMWNDEMERLLGIRPRKYS--EGILQDIHWAHGSIG 418
Query: 684 EY 685
+
Sbjct: 419 YF 420
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 65.6 bits (159), Expect = 4e-11
Identities = 107/708 (15%), Positives = 200/708 (28%), Gaps = 235/708 (33%)
Query: 4 SEDDFDPGSKYHI---PNNVEYLRYFVSYISQFQFHKALCTEAGQFDPKNPLKTPLHQYY 60
S+++ D HI + V + Q +F ++ L Y
Sbjct: 47 SKEEID-----HIIMSKDAVSGTLRLFWTLLSKQ-----EEMVQKF-----VEEVLRINY 91
Query: 61 KDAGDSWIALYNQP-----HFKETIEKLWTDIKPLYLELHAYVRRKLLAKYGPEVVFEKE 115
K QP + E ++L+ D + AKY V +
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF-------------AKYN---VSRLQ 135
Query: 116 PIPAHLLVHKALCTEAGQFDPKNPLKTPLHQCDIYGSKKAGNLFKKMLSLGASKPWPEAL 175
P L + +AL + P + I G +L G+ K W AL
Sbjct: 136 PY---LKLRQALL----ELRPAKNVL-------IDG----------VL--GSGKTW-VAL 168
Query: 176 EVLTGQKNLDAGPMLQYFDPLYKWLK--EENRKTGTFVGWEKGRNGNMWAQ---SWSNIY 230
+V L + ++ WL N + + Q +W++
Sbjct: 169 DVC-----LSYKVQCKMDFKIF-WLNLKNCNSPETVLEMLQ-----KLLYQIDPNWTSRS 217
Query: 231 DITQPYPDKQEPDITKELQRQGYTVLKMFKKA-------------EDFFLSLNMSK--MT 275
D + + I EL+R K ++ F LS K +T
Sbjct: 218 DHSSNIKLRIH-SIQAELRR--LLKSKPYENCLLVLLNVQNAKAWNAFNLS---CKILLT 271
Query: 276 TDFWENSVFVRPKDRDIYSSV-------LSDMQKLFATAKLCPYNASASNDTKCNLDFDP 328
T F + + F+ S +++ L C N P
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN----P 327
Query: 329 TVINIMATS-RDPKELAYYWQEFRNKTGKLMRKKYAKYVQILNEGVRLSHYKDAGDSWIA 387
++I+A S RD W +++ + + +L
Sbjct: 328 RRLSIIAESIRDGLAT---WDNWKHVNCDKLTTIIESSLNVLEP---------------- 368
Query: 388 LYNQPHFKETIEKLWTDIKPLYVELHAYVRRKLLAKYGPEVVFEKE-PIPAHLLGNMWAQ 446
+ + ++ L VF IP LL +W
Sbjct: 369 ---------------AEYRKMFDRL---------------SVFPPSAHIPTILLSLIWFD 398
Query: 447 SWSNIYDITQPYPDIQEPDITKELQRQNYTVLKMFKKAEDFFLSLNMSKMTTDFWENSVF 506
D+ + +L + Y++++ K+ ++ +S+ +
Sbjct: 399 V---------IKSDVM--VVVNKLHK--YSLVE--KQPKESTISIPSIYL--------EL 435
Query: 507 VRPKDRDIVCHGSAWDFHDGKTYRIKLCALVGEDDLTTIHHEM---GHIEYDMMYSQQ-- 561
+ + H S D Y I DDL + + HI + + +
Sbjct: 436 KVKLENEYALHRSIVDH-----YNIPKT--FDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488
Query: 562 -----------LPFYQ-----TSPNPGFHEAVGDTIVLSVKTHKHLKRIGLLKEDFKDDP 605
F + S ++ +T+ +K +K I +DP
Sbjct: 489 RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL-QQLKFYK--PYI------CDNDP 539
Query: 606 --ESTINELFKFGL---ERLTFPPFGYLTDLWRWSVF--NGSIPEDQY 646
E +N + F E L + TDL R ++ + +I E+ +
Sbjct: 540 KYERLVNAILDFLPKIEENLICSKY---TDLLRIALMAEDEAIFEEAH 584
Score = 60.3 bits (145), Expect = 2e-09
Identities = 60/431 (13%), Positives = 124/431 (28%), Gaps = 113/431 (26%)
Query: 293 YSSVLSDMQKLFATAKLCPYNASASNDTKCN--LDFDPTVI------NIMATSRDPKELA 344
Y +LS + F ++ C D +++ +I+ S+D
Sbjct: 18 YKDILSVFEDAFV------------DNFDCKDVQDMPKSILSKEEIDHIIM-SKDAVSGT 64
Query: 345 YY--WQEFRNKTGKLMRKKYAKYVQILNEGVRLSHYKDAGDSWIALYNQP-----HFKET 397
W + K + VQ E V +YK QP + E
Sbjct: 65 LRLFW---------TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 398 IEKLWTD---IKPLYV---ELHAYVRRKLL-AKYGPEVVFE------K----------EP 434
++L+ D V + + +R+ LL + V+ + K
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 435 IPAHLLGNMWAQSWSNIYDITQPYPDIQEPDITKELQRQNYTVLKMFKKAEDFFLSLNMS 494
+ + ++ W N+ + P + + LQ+ Y + + D ++ +
Sbjct: 176 VQCKMDFKIF---WLNLKNCNSP------ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 495 KMTTDFWENSVFVRPKDR------DIVCHGSAWDFHDGKTYRIKLCALVGEDDLTTIHHE 548
+ + V + AW+ + C ++ LTT +
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS------CKIL----LTTRFKQ 276
Query: 549 MGHIEYDMMYSQQLPFYQTSPNPGFHEAVGDTI---VLSVKTHKHLKR---------IGL 596
+ + + + ++ L + L R + +
Sbjct: 277 ---VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD-LPREVLTTNPRRLSI 332
Query: 597 LKEDFKDDPESTINELFKFGLERLT---------FPPFGYLTDLWRWSVFNGS--IPEDQ 645
+ E +D +T + ++LT P Y R SVF S IP
Sbjct: 333 IAESIRDGL-ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391
Query: 646 YETAWWKLREE 656
W+ + +
Sbjct: 392 LSLIWFDVIKS 402
Score = 40.2 bits (93), Expect = 0.002
Identities = 25/154 (16%), Positives = 46/154 (29%), Gaps = 41/154 (26%)
Query: 546 HHEMGHIEYDM-----MYSQQLPFYQTSPNPGFHEAVGDTIVLSVKTHKHLKRIGLLKED 600
HH H++++ Y L ++ F V + K + + + L KE+
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFE----DAF---VDN---FDCKDVQDMPKSILSKEE 50
Query: 601 FKD-----DPESTINELFKFGLERLTFPPFGYLTDLWRWSVFNGSIPEDQYETAWWKLRE 655
D S LF L + F + Y+ ++
Sbjct: 51 IDHIIMSKDAVSGTLRLFWTLLSK---QEEMV-------QKFVEEVLRINYKFLMSPIKT 100
Query: 656 EYQGVQPPMPRSE---------DDFDPGSKYHIP 680
E + QP M +D +KY++
Sbjct: 101 EQR--QPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.5 bits (115), Expect = 7e-06
Identities = 99/601 (16%), Positives = 173/601 (28%), Gaps = 224/601 (37%)
Query: 4 SEDDFDPGSKYHIPNNVEYLRYFVSYISQFQFHKALCTEAGQFDPKNPLKTPLHQYYKDA 63
+ DD +P + E + F+ Y+S ++ GQFD L L
Sbjct: 49 AADD-EPTTP------AELVGKFLGYVS----SLVEPSKVGQFDQV--LNLCLT------ 89
Query: 64 GDSWIALYNQPHFKETIEKLW-TDIKPLYLELHAYVRRKLLAKYGPEVVFEKEPIPAHLL 122
F+ L DI HA KLL + +V KE I ++
Sbjct: 90 -----------EFENCY--LEGNDI-------HALA-AKLLQENDTTLVKTKELIKNYI- 127
Query: 123 VHKALCTEAGQFDPKNPLKTPLHQCDIYGSKKA-------GNL---FKKMLSLGAS-KPW 171
A + K + L + G+ + GN F+++ L +
Sbjct: 128 ---TARIMAKRPFDKKS-NSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVL 183
Query: 172 PEAL-----EVLTG--QKNLDAGPML-QYFDPLYKWLKEENRKTGT------FVGWEKGR 217
L E L+ + LDA + Q + + +WL+ + +
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFTQGLN-ILEWLENPSNTPDKDYLLSIPI------ 236
Query: 218 NGNMWAQSWSNIYDITQ--PYPDKQEPDITKELQRQGYTVLKMFKK-------AEDFFLS 268
S I + Q Y +T + G+T ++ ++ +
Sbjct: 237 -------SCPLIG-VIQLAHYV------VT--AKLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 269 LNMSKMTTDFWENSVFVRPKDRDIYSSVLSDMQKLFATAKLCPYNASASNDTKCNLDFDP 328
+ +++ + WE+ F + SV + LF + + N P
Sbjct: 281 VAIAETDS--WES--F--------FVSVRKAITVLF-------FIGVRCYEAYPNTSLPP 321
Query: 329 TVINIMATSRDPKE------LAYYWQEFRNKTGKLMRKKYAKYVQILNEGVRLSHYKDAG 382
+ I+ S + E L+ + L +++ YV N SH
Sbjct: 322 S---ILEDSLENNEGVPSPMLSI--------SN-LTQEQVQDYVNKTN-----SHLPAGK 364
Query: 383 DSWIALYNQP-HFKETIEKLWTDIKPLYV------ELHAYVR--RKLLAKYGPE---VVF 430
I+L N + V L+ RK A G + + F
Sbjct: 365 QVEISLVNGAKNL---------------VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF 409
Query: 431 EKEPIPAHLLGNMWAQSWSNIYD-ITQPY--PDIQEPDITKELQRQNYTVLKMFKKAEDF 487
+ + +SN + + P+ L A D
Sbjct: 410 SERKL-----------KFSNRFLPVASPFHSH---------------L--L---VPASDL 438
Query: 488 FLSLNMSKMTTDFWENSVFVRPKDRDI-VCHGSAWDFHDGKTYRIKLCALVGE---DDLT 543
D +N+V KD I V +D DG R L + E D +
Sbjct: 439 INK--------DLVKNNVSFNAKDIQIPV-----YDTFDGSDLR-VLSGSISERIVDCII 484
Query: 544 T 544
Sbjct: 485 R 485
Score = 41.2 bits (96), Expect = 0.001
Identities = 32/156 (20%), Positives = 55/156 (35%), Gaps = 52/156 (33%)
Query: 68 IALYNQP-HFKETIEKLWTDI-----KPLY-LELHAYVRRKLLAKYGPE---VVFEKE-- 115
I+L N + + + LY L L RK A G + + F +
Sbjct: 368 ISLVNGAKNL----------VVSGPPQSLYGLNLTL---RKAKAPSGLDQSRIPFSERKL 414
Query: 116 -------PI--PAH--LL------VHKALCTEAGQFDPKNPLKTPL-HQCDIYGS---KK 154
P+ P H LL ++K L F+ K+ ++ P+ D GS
Sbjct: 415 KFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD-IQIPVYDTFD--GSDLRVL 471
Query: 155 AGNLFKKMLSLGASKP--WPEALEVLTGQKNLDAGP 188
+G++ ++++ P W + LD GP
Sbjct: 472 SGSISERIVDCIIRLPVKWETTTQ-FKATHILDFGP 506
Score = 38.1 bits (88), Expect = 0.012
Identities = 50/347 (14%), Positives = 86/347 (24%), Gaps = 156/347 (44%)
Query: 274 MTTDFWENSVFVRPKDRDIYSSVLSDMQKLFATAKLCPYNASASNDTKCNLDFDPTVINI 333
M D ++ S + ++ A K F ++++I
Sbjct: 1631 MGMDLYKTSKAAQ---------------DVWNRADNH---------FKDTYGF--SILDI 1664
Query: 334 MATSRDPKELAYYWQEFRNKTGKLMRKKYAKYVQILNEGVRLSHYKDAGDSWIALYNQPH 393
+ +P L + F + GK +R+ Y+ + ++ D L +
Sbjct: 1665 VIN--NPVNLTIH---FGGEKGKRIRENYSAMI-----------FETIVDG--KLKTEKI 1706
Query: 394 FKETIEKLWTDIKPLYVELHAYVRRKLLAKYGPEVVFEKEPIPAHLLGNMWAQSWSNIYD 453
FKE E F LL +
Sbjct: 1707 FKEINEHS------------------------TSYTFRS---EKGLL---------SATQ 1730
Query: 454 ITQP---------YPDIQEPDITKELQRQNYTVLKMFKKAEDFF--LSLNMSKMTTDFWE 502
TQP + D++ K A+ F SL E
Sbjct: 1731 FTQPALTLMEKAAFEDLKS---------------KGLIPADATFAGHSLG---------E 1766
Query: 503 NSVFVRPKDRDIVCHGSAWDFHDGKTYRIKLCALVGEDDLTTIHH-----EMGHIEYDMM 557
+ + +++ G T+ E+G Y M+
Sbjct: 1767 YAA--------LASLADVMSIESL----VEVVFYRGM----TMQVAVPRDELGRSNYGMI 1810
Query: 558 YSQQLPFYQTSPNPG-----FHEAVGDTIVLSVKTHKHLKRIGLLKE 599
+ NPG F + +V V KR G L E
Sbjct: 1811 ----------AINPGRVAASFSQEALQYVVERVG-----KRTGWLVE 1842
Score = 32.7 bits (74), Expect = 0.53
Identities = 27/157 (17%), Positives = 52/157 (33%), Gaps = 43/157 (27%)
Query: 461 IQEPDITKELQRQNYTVLK-MFKKAEDFF-----LSL------NMSKMTTDFW-ENSVFV 507
QE + +L + + ++ +A++ F S+ N +T F E +
Sbjct: 1626 SQEQGMGMDL-YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI 1684
Query: 508 RPKDRDIVCHGSAWDFHDGKTYRIKLCALVGEDDLT-TIHHEMGHI---EYDMMYSQQLP 563
R ++ DGK K+ + E + T E G + ++
Sbjct: 1685 RENYSAMIFETIV----DGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF--------- 1731
Query: 564 FYQTSPNPGFHEAVGDTIVLSVKTHKHLKRIGLLKED 600
T P A+ ++ + LK GL+ D
Sbjct: 1732 ---TQP------AL---TLMEKAAFEDLKSKGLIPAD 1756
Score = 29.6 bits (66), Expect = 4.4
Identities = 14/101 (13%), Positives = 28/101 (27%), Gaps = 52/101 (51%)
Query: 544 TIHHEMGHIEYDMMYSQQLPFYQTSPNPGFHEAVGDTIVLSVKTHKHLKRIGLLKEDFK- 602
T+ H G +E+ +++ + + L+E F
Sbjct: 10 TLSH--GSLEH-------------------------VLLVPTASFFIASQ---LQEQFNK 39
Query: 603 ------------DDPESTINELFKFGLERLTFPPFGYLTDL 631
D+P + + KF GY++ L
Sbjct: 40 ILPEPTEGFAADDEPTTPAELVGKF---------LGYVSSL 71
>3dwc_A TCMCP-1, metallocarboxypeptidase; cowrin family of
metallocarboxypept carboxypeptidase, hydrolase; 2.10A
{Trypanosoma cruzi}
Length = 505
Score = 43.7 bits (102), Expect = 2e-04
Identities = 25/148 (16%), Positives = 46/148 (31%), Gaps = 16/148 (10%)
Query: 542 LTTIHHEMGHIEYDMMYSQQLPFYQ---TSPNPGFHEAVGDTIVLSVKTHKHLKRI--GL 596
L + HE GH +Y+ + Q + + G HE + +
Sbjct: 262 LLGVIHETGHAKYEQNCGPKGFETQPVCMARSLGVHEGQSLFAEMQIGRSGAFMEFLAPR 321
Query: 597 LKEDFKDDPESTINELFKFGLER-----------LTFPPFGYLTDLWRWSVFNGSIPEDQ 645
L E F D P T + + + L +P L + +G+I ++
Sbjct: 322 LVEYFGDQPAFTSSNMKRVIQRVSPGLIRIDADELCYPLHVMLRYEIERDLMDGNIEAEE 381
Query: 646 YETAWWKLREEYQGVQPPMPRSEDDFDP 673
W + + Y G++ E
Sbjct: 382 VPRVWNEKMKSYLGLETLGNDKEGCLQD 409
>3hoa_A Thermostable carboxypeptidase 1; proline-rich loop, hydrolase;
2.10A {Thermus thermophilus HB27} PDB: 1wgz_A
Length = 509
Score = 41.0 bits (95), Expect = 0.001
Identities = 43/337 (12%), Positives = 90/337 (26%), Gaps = 71/337 (21%)
Query: 347 WQEFRNKTGKL--MRKKYAKYVQILNEGVRLSHYKDAGDSWIALYNQPHFKETIEKLWTD 404
W+ F ++ + K+ A+ + L Y + D+ + Y + L+ +
Sbjct: 128 WRGFLPYLKRVYALTKEKAEVLFALPPAPGDPPYGELYDALLDGYEPGMRARELLPLFAE 187
Query: 405 IKPLYVELHAYVRRKLLAKYGPEVVFEKEPIPAHLLGNMWAQSWSNIYDITQPYPDIQEP 464
+K L + +P I
Sbjct: 188 LKEGLKGLLDRILGS----------------------------------GKRPDTSILHR 213
Query: 465 DITKELQRQNYTVLKMFKKAEDFFLSLNMSKMTTDFWENSVFVRPKDRDIVCHGSAWDFH 524
E QR+ + L ++ + + P D I F+
Sbjct: 214 PYPVEAQRRF-----ALELLSACGYDLEAGRLDPTAHPFEIAIGPGDVRITTRYYEDFFN 268
Query: 525 DGKTYRIKLCALVGEDDLTTIHHEMGHIEYDMMYSQQLPFY--QTSPNPGFHEAVGDTIV 582
G + HEMGH Y+ ++ + + G HE+ T
Sbjct: 269 AG---------------IFGTLHEMGHALYEQGLPKEHWGTPRGDAVSLGVHESQSRTWE 313
Query: 583 LSVKTHKHLKR--IGLLKEDFKDDPESTINELFKF-----------GLERLTFPPFGYLT 629
V +E F + ++ + + +T+ +
Sbjct: 314 NLVGRSLGFWERFFPRAREVFASLGDVSLEDFHFAVNAVEPSLIRVEADEVTYNLHILVR 373
Query: 630 DLWRWSVFNGSIPEDQYETAWWKLREEYQGVQPPMPR 666
++F G + + AW + ++ GV P +
Sbjct: 374 LELELALFRGELSPEDLPEAWAEKYRDHLGVAPKDYK 410
>3hq2_A Bacillus subtilis M32 carboxypeptidase; hydrolase, metal-binding,
metalloprotease, protease, zinc; 2.90A {Bacillus
subtilis}
Length = 501
Score = 39.8 bits (92), Expect = 0.003
Identities = 27/227 (11%), Positives = 63/227 (27%), Gaps = 36/227 (15%)
Query: 456 QPYPDIQEPDITKELQRQNYTVLKMFKKAEDFFLSLNMSKMTTDFWENSVFVRPKDRDIV 515
+P KE Q++ ++ + ++ + + D +
Sbjct: 194 KPDTSFITKAFPKEKQKEL-----SLYFLQELGYDFDGGRLDETVHPFATTLNRGDVRVT 248
Query: 516 CHGSAWDFHDGKTYRIKLCALVGEDDLTTIHHEMGHIEYDMMYSQQLPFY--QTSPNPGF 573
DF + HE GH Y+ + L + G
Sbjct: 249 TRYDEKDFRTA---------------IFGTIHECGHAIYEQNIDEALSGTNLSDGASMGI 293
Query: 574 HEAVGDTIVLSVKTHKHLKR--IGLLKEDFKDDPESTINE------------LFKFGLER 619
HE+ + +KH ++E + + + +
Sbjct: 294 HESQSLFYENFIGRNKHFWTPYYKKIQEASPVQFKDISLDDFVRAINESKPSFIRVEADE 353
Query: 620 LTFPPFGYLTDLWRWSVFNGSIPEDQYETAWWKLREEYQGVQPPMPR 666
LT+P + ++F+ + + + W + ++Y G+ P
Sbjct: 354 LTYPLHIIIRYEIEKAIFSNEVSVEDLPSLWNQKYQDYLGITPQTDA 400
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.93
Identities = 10/50 (20%), Positives = 15/50 (30%), Gaps = 24/50 (48%)
Query: 77 KETIEKLWTDIKPLYLELHAYVRRKLLAKYGPEVVFEKEPIPAHLLVHKA 126
K+ ++KL +K Y + PA L KA
Sbjct: 19 KQALKKLQASLKL----------------YADDSA------PA--LAIKA 44
Score = 29.1 bits (64), Expect = 2.5
Identities = 7/43 (16%), Positives = 12/43 (27%), Gaps = 22/43 (51%)
Query: 395 KETIEKLWTDIKPLYVELHAYVRRKLLAKYGPEVVFEKEPIPA 437
K+ ++KL +K Y + PA
Sbjct: 19 KQALKKLQASLKL----------------YADDSA------PA 39
>4evx_A Putative phage endolysin; structural genomics, PSI-biology, program
for the characteri secreted effector proteins, pcsep;
HET: MLY MSE; 1.70A {Salmonella enterica subsp}
Length = 106
Score = 29.2 bits (65), Expect = 1.5
Identities = 9/60 (15%), Positives = 18/60 (30%), Gaps = 10/60 (16%)
Query: 371 EGVRLSHYKDAGDSWIALYN----------QPHFKETIEKLWTDIKPLYVELHAYVRRKL 420
+G+ L Y+D +W+ Y + L D+ + L +
Sbjct: 19 QGLSLEXYRDRQGNWVIGYGHMLTPDETLTFITPDQAEAFLLDDLNSCDILLQNCLPELN 78
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase
(GPX4); human GPX4, selenoprotein, thioredoxin-fold,
anti-oxidatve defense system; 1.55A {Homo sapiens}
Length = 183
Score = 29.5 bits (67), Expect = 2.3
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 8/35 (22%)
Query: 194 DPLYKWLKEENRKTGTF---VGW--EK---GRNGN 220
PL+KW+K + + G + W K +NG
Sbjct: 127 HPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGC 161
>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase;
GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}
Length = 185
Score = 29.5 bits (67), Expect = 2.6
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 8/35 (22%)
Query: 194 DPLYKWLKEENRKTGTF---VGW--EK---GRNGN 220
PL+KW+K + + G + W K +NG
Sbjct: 129 HPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGC 163
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX,
phospholipid hydroperoxidase, struc genomics, structural
genomics consortium, SGC; 2.00A {Homo sapiens}
Length = 181
Score = 28.8 bits (65), Expect = 4.0
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 20/64 (31%)
Query: 194 DPLYKWLKEENRKTGTFVGW--EK---GRNGNM---WAQSWSNIYDITQPYPDKQEPDIT 245
P +K+L + +G W K +G + W + S ++ P IT
Sbjct: 130 HPAFKYLAQT---SGKEPTWNFWKYLVAPDGKVVGAWDPTVS---------VEEVRPQIT 177
Query: 246 KELQ 249
++
Sbjct: 178 ALVR 181
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase,
lipid peroxidase, schistosoma detoxification pathway;
1.00A {Schistosoma mansoni} PDB: 2wgr_A
Length = 169
Score = 28.3 bits (64), Expect = 5.0
Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 12/64 (18%)
Query: 194 DPLYKWLKEENRKT-GTFVGW--EK---GRNGNMWAQSWSNIYDITQPYPDKQEPDITKE 247
D LYK+LK T + W K R G + +S P E DI +
Sbjct: 112 DDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQ-PVKRYSPTTA-----PYDIEGDIMEL 165
Query: 248 LQRQ 251
L+++
Sbjct: 166 LEKK 169
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF
hand, TIM barrel, C2 domain, GTPase, lipase, C binding,
GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q*
2rgn_A* 3ah8_A*
Length = 327
Score = 28.9 bits (64), Expect = 6.7
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
Query: 342 ELAYYWQEFRNKTGKLMRKKYAKYVQILNEGVRLSHYKDAGDSWIALYNQPHFKETIEKL 401
E + F N T + ++Y Q+L E + +++ + + P F+ + L
Sbjct: 180 ERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVIL 239
Query: 402 WTDIKPLYVELHAYVRRKLLAKYGPE 427
+ + K L E Y L Y PE
Sbjct: 240 FLNKKDLLEEKIMYSH---LVDYFPE 262
>3ahn_A Oligopeptidase, PZ peptidase A; hydrolase, hydrolase-hydrolase
inhibitor complex; HET: 3A1; 1.80A {Geobacillus SP} PDB:
3ahm_A* 3aho_A* 2h1n_A 2h1j_A
Length = 564
Score = 28.9 bits (65), Expect = 7.1
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 540 DDLTTIHHEMGH-IEYDMMYSQQLPFYQTSP 569
D+ + HE GH + ++P Y
Sbjct: 349 GDIDVLTHEAGHAFQVYESRHYEIPEYNWPT 379
>3sks_A Putative oligoendopeptidase F; structural genomics, center for
structural genomics of infec diseases, csgid, protease,
hydrolase; 2.05A {Bacillus anthracis}
Length = 567
Score = 28.9 bits (65), Expect = 7.1
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 540 DDLTTIHHEMGH-IEYDMMYSQQLPFYQTSP 569
D+ + HE GH + ++P Y
Sbjct: 352 GDIDVLTHEAGHAFQVYESRKFEIPEYNWPT 382
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double
layers of alpha helices on TOP and bottom, hydrolase;
HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP:
c.117.1.1 PDB: 1m21_A*
Length = 503
Score = 28.7 bits (65), Expect = 7.2
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 2/29 (6%)
Query: 592 KRIGLLKEDFKDDPESTINELFKFGLERL 620
KRIGLL+ + L + L
Sbjct: 274 KRIGLLQTPLLKYRG--MPPLIEQAATEL 300
>3hde_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosidase,
hydrolase, late protein; 1.95A {Enterobacteria phage
P21}
Length = 165
Score = 27.8 bits (61), Expect = 7.8
Identities = 16/83 (19%), Positives = 26/83 (31%), Gaps = 9/83 (10%)
Query: 371 EGVRLSHYKDAGDSWIALYNQPHFKETIEKLWTDIKPLYVELHAYVRRKLLAKYGPEVVF 430
EGV YKD W + + K +T + K LA ++
Sbjct: 35 EGVSYIPYKDIVGVWTVCHGHTGKDIMLGKTYTK------AECKALLNKDLATVARQI-- 86
Query: 431 EKEPIPAHLLGNMWAQSWSNIYD 453
I + M +S +Y+
Sbjct: 87 -NPYIKVDIPETMRGALYSFVYN 108
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer,
signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP:
a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A*
1zca_A*
Length = 362
Score = 28.1 bits (62), Expect = 9.7
Identities = 9/73 (12%), Positives = 27/73 (36%)
Query: 325 DFDPTVINIMATSRDPKELAYYWQEFRNKTGKLMRKKYAKYVQILNEGVRLSHYKDAGDS 384
+ ++ E +++ F + T L +++ Q+L E + + ++ +
Sbjct: 197 EIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNI 256
Query: 385 WIALYNQPHFKET 397
+ + N F
Sbjct: 257 FETIVNNRVFSNV 269
>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A
{Populus trichocarpa x populusdeltoides} PDB: 2p5r_A
Length = 170
Score = 27.5 bits (62), Expect = 9.8
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 6/33 (18%)
Query: 194 DPLYKWLKEENRKT-GTFVGW--EK---GRNGN 220
PLY++LK G + W K ++G
Sbjct: 113 SPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQ 145
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.433
Gapped
Lambda K H
0.267 0.0577 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,222,509
Number of extensions: 683669
Number of successful extensions: 1737
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1699
Number of HSP's successfully gapped: 58
Length of query: 686
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 586
Effective length of database: 3,909,693
Effective search space: 2291080098
Effective search space used: 2291080098
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.6 bits)