BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17159
(326 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VKT|A Chain A, Human Ctp Synthetase 2 - Glutaminase Domain
Length = 289
Score = 276 bits (707), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 136/268 (50%), Positives = 175/268 (65%), Gaps = 4/268 (1%)
Query: 44 KTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHK 103
K +I LVGKYTK DCYAS+ +ALEH++ N L L Y DS L +T + ++H+
Sbjct: 24 KICSIALVGKYTKLRDCYASVFKALEHSALAINHKLNLMYIDSIDLEKITETEDPVKFHE 83
Query: 104 TWSDFCKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGL 163
W CK DGI+VPGGFG RG GK+ A WAR PFLG+CLG+Q AVIE+ R+ L L
Sbjct: 84 AWQKLCKADGILVPGGFGIRGTLGKLQAISWARTKKIPFLGVCLGMQLAVIEFARNCLNL 143
Query: 164 KDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHETHFKPEHKSKLKLLYGNKD 223
KDAD+ E +P P+V+ MPEHNPGN+GGTMRLG T FK E+ S L+ LYG+
Sbjct: 144 KDADSTEFRPNAPV---PLVIDMPEHNPGNLGGTMRLGIRRTVFKTEN-SILRKLYGDVP 199
Query: 224 KIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPEYXXX 283
IEERHRHR+EVN + +E++ F G D RMEI EL +HPY+V VQFHPE+
Sbjct: 200 FIEERHRHRFEVNPNLIKQFEQNDLSFVGQDVDGDRMEIIELANHPYFVGVQFHPEFSSR 259
Query: 284 XXXXXXXFLGLILAAAGKLDAYIEKECR 311
+LGL+LAA G L+AY+++ C+
Sbjct: 260 PMKPSPPYLGLLLAATGNLNAYLQQGCK 287
>pdb|2V4U|A Chain A, Human Ctp Synthetase 2 - Glutaminase Domain In Complex
With 5-Oxo-L-Norleucine
Length = 289
Score = 272 bits (696), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/268 (50%), Positives = 174/268 (64%), Gaps = 4/268 (1%)
Query: 44 KTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHK 103
K +I LVGKYTK DCYAS+ +ALEH++ N L L Y DS L +T + ++H+
Sbjct: 24 KICSIALVGKYTKLRDCYASVFKALEHSALAINHKLNLMYIDSIDLEKITETEDPVKFHE 83
Query: 104 TWSDFCKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGL 163
W CK DGI+VPGGFG RG GK+ A WAR PFLG+ LG+Q AVIE+ R+ L L
Sbjct: 84 AWQKLCKADGILVPGGFGIRGTLGKLQAISWARTKKIPFLGVXLGMQLAVIEFARNCLNL 143
Query: 164 KDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHETHFKPEHKSKLKLLYGNKD 223
KDAD+ E +P P+V+ MPEHNPGN+GGTMRLG T FK E+ S L+ LYG+
Sbjct: 144 KDADSTEFRPNAPV---PLVIDMPEHNPGNLGGTMRLGIRRTVFKTEN-SILRKLYGDVP 199
Query: 224 KIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPEYXXX 283
IEERHRHR+EVN + +E++ F G D RMEI EL +HPY+V VQFHPE+
Sbjct: 200 FIEERHRHRFEVNPNLIKQFEQNDLSFVGQDVDGDRMEIIELANHPYFVGVQFHPEFSSR 259
Query: 284 XXXXXXXFLGLILAAAGKLDAYIEKECR 311
+LGL+LAA G L+AY+++ C+
Sbjct: 260 PMKPSPPYLGLLLAATGNLNAYLQQGCK 287
>pdb|1VCO|A Chain A, Crystal Structure Of T.Th. Hb8 Ctp Synthetase Complex With
Glutamine
Length = 550
Score = 192 bits (489), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 122/331 (36%), Positives = 173/331 (52%), Gaps = 53/331 (16%)
Query: 5 ESVRAKISMFCHVTPENVIFNPDVKPIYKVRML--------RIDRL-------------- 42
E VR K+++F +V P +V +P V+ +Y+V +L ++R
Sbjct: 229 EEVRRKVALFTNVRPGHVFSSPTVEHLYEVPLLLEEQGLGRAVERALGLEAVIPNLSFWQ 288
Query: 43 ---------NKTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDP 93
+TV I + GKY K D Y SL AL HA + +++K+ D+E L
Sbjct: 289 EAVRVLKHPERTVKIAIAGKYVKMPDAYLSLLEALRHAGIKNRARVEVKWVDAESL---- 344
Query: 94 KTGNMAEYHKTWSDFCKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGLQAAV 153
A+ + + D V GI+VPGGFG RG+EGK+ A ++ARE P+LGICLGLQ AV
Sbjct: 345 ---EAADLEEAFRD---VSGILVPGGFGVRGIEGKVRAAQYARERKIPYLGICLGLQIAV 398
Query: 154 IEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEH-NPGNMGGTMRLGKHETHFKPEHK 212
IE+ R+V GLK A++ E P HPV+ MPE +GGTMRLG KP
Sbjct: 399 IEFARNVAGLKGANSTEFDP---HTPHPVIDLMPEQLEVEGLGGTMRLGDWPMRIKP--G 453
Query: 213 SKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVD-----EKEVRMEIAELRD 267
+ L LYG K+++ ERHRHRYEVN YV E+ G + + +E EL+D
Sbjct: 454 TLLHRLYG-KEEVLERHRHRYEVNPLYVDGLERAGLVVSATTPGMRGRGAGLVEAIELKD 512
Query: 268 HPYYVAVQFHPEYXXXXXXXXXXFLGLILAA 298
HP+++ +Q HPE+ F+G + AA
Sbjct: 513 HPFFLGLQSHPEFKSRPMRPSPPFVGFVEAA 543
>pdb|1VCM|A Chain A, Crystal Structure Of T.Th. Hb8 Ctp Synthetase
pdb|1VCN|A Chain A, Crystal Structure Of T.th. Hb8 Ctp Synthetase Complex With
Sulfate Anion
Length = 550
Score = 192 bits (488), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 122/331 (36%), Positives = 173/331 (52%), Gaps = 53/331 (16%)
Query: 5 ESVRAKISMFCHVTPENVIFNPDVKPIYKVRML--------RIDRL-------------- 42
E VR K+++F +V P +V +P V+ +Y+V +L ++R
Sbjct: 229 EEVRRKVALFTNVRPGHVFSSPTVEHLYEVPLLLEEQGLGRAVERALGLEAVIPNLSFWQ 288
Query: 43 ---------NKTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDP 93
+TV I + GKY K D Y SL AL HA + +++K+ D+E L
Sbjct: 289 EAVRVLKHPERTVKIAIAGKYVKMPDAYLSLLEALRHAGIKNRARVEVKWVDAESL---- 344
Query: 94 KTGNMAEYHKTWSDFCKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGLQAAV 153
A+ + + D V GI+VPGGFG RG+EGK+ A ++ARE P+LGICLGLQ AV
Sbjct: 345 ---EAADLDEAFRD---VSGILVPGGFGVRGIEGKVRAAQYARERKIPYLGICLGLQIAV 398
Query: 154 IEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEH-NPGNMGGTMRLGKHETHFKPEHK 212
IE+ R+V GLK A++ E P HPV+ MPE +GGTMRLG KP
Sbjct: 399 IEFARNVAGLKGANSTEFDP---HTPHPVIDLMPEQLEVEGLGGTMRLGDWPMRIKP--G 453
Query: 213 SKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVD-----EKEVRMEIAELRD 267
+ L LYG K+++ ERHRHRYEVN YV E+ G + + +E EL+D
Sbjct: 454 TLLHRLYG-KEEVLERHRHRYEVNPLYVDGLERAGLVVSATTPGMRGRGAGLVEAIELKD 512
Query: 268 HPYYVAVQFHPEYXXXXXXXXXXFLGLILAA 298
HP+++ +Q HPE+ F+G + AA
Sbjct: 513 HPFFLGLQSHPEFKSRPMRPSPPFVGFVEAA 543
>pdb|3NVA|A Chain A, Dimeric Form Of Ctp Synthase From Sulfolobus Solfataricus
pdb|3NVA|B Chain B, Dimeric Form Of Ctp Synthase From Sulfolobus Solfataricus
Length = 535
Score = 182 bits (462), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 122/333 (36%), Positives = 172/333 (51%), Gaps = 51/333 (15%)
Query: 1 MDDTESVRAKISMFCHVTPENVIFNPDVKPIYKVRMLR---------IDRLN-------- 43
+DD R KI++F +V ++++ + DV+ Y+V ++ + RL
Sbjct: 218 LDD--ETRRKIALFTNVKVDHIVSSYDVETSYEVPIILESQKLVSKILSRLKLEDRQVDL 275
Query: 44 ----------------KTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSE 87
KT+ I LVGKYTK +D Y S+ A+ HAS + +L + +S
Sbjct: 276 TDWISFVNNIKGINSKKTINIALVGKYTKLKDSYISIKEAIYHASAYIGVRPKLIWIEST 335
Query: 88 LLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICL 147
L D K N+ E V+GIIV GFG RG EGKI A K+ARE+N PFLGIC
Sbjct: 336 DLESDTK--NLNEI------LGNVNGIIVLPGFGSRGAEGKIKAIKYAREHNIPFLGICF 387
Query: 148 GLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEH-NPGNMGGTMRLGKHETH 206
G Q +++E+ R VLGL +A++ E P + PV+ + E N +GGTMRLG +
Sbjct: 388 GFQLSIVEFARDVLGLSEANSTEINP---NTKDPVITLLDEQKNVTQLGGTMRLGAQKII 444
Query: 207 FKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELR 266
K + LYG K + ERHRHRYEVN KYV E G + +G+ E + +EI EL
Sbjct: 445 LK--EGTIAYQLYGKK-VVYERHRHRYEVNPKYVDILEDAGLVVSGISENGL-VEIIELP 500
Query: 267 DHPYYVAVQFHPEYXXXXXXXXXXFLGLILAAA 299
+ ++VA Q HPE+ +LG I A A
Sbjct: 501 SNKFFVATQAHPEFKSRPTNPSPIYLGFIRAVA 533
>pdb|1S1M|A Chain A, Crystal Structure Of E. Coli Ctp Synthetase
pdb|1S1M|B Chain B, Crystal Structure Of E. Coli Ctp Synthetase
pdb|2AD5|A Chain A, Mechanisms Of Feedback Regulation And Drug Resistance Of
Ctp Synthetases: Structure Of The E. Coli Ctps/ctp
Complex At 2.8- Angstrom Resolution.
pdb|2AD5|B Chain B, Mechanisms Of Feedback Regulation And Drug Resistance Of
Ctp Synthetases: Structure Of The E. Coli Ctps/ctp
Complex At 2.8- Angstrom Resolution
Length = 545
Score = 175 bits (444), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 115/334 (34%), Positives = 165/334 (49%), Gaps = 59/334 (17%)
Query: 8 RAKISMFCHVTPENVIFNPDVKPIYKV-RMLRIDRLN----------------------- 43
RAKI++FC+V + VI DV IYK+ +L+ L+
Sbjct: 221 RAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVI 280
Query: 44 -------KTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTG 96
VTIG+VGKY + D Y S+ AL+H + + +K DS+ D +T
Sbjct: 281 FEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQ----DVET- 335
Query: 97 NMAEYHKTWSDFCKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGLQAAVIEY 156
+ +D I+VPGGFG RG+EG I ++ARENN P+LGICLG+Q A+I+Y
Sbjct: 336 ------RGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDY 389
Query: 157 GRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGN-----------MGGTMRLGKHET 205
R V +++A++ E P ++PVV + E N +GGTMRLG +
Sbjct: 390 ARHVANMENANSTEFVP---DCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQC 446
Query: 206 HFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAEL 265
+ S ++ LY N I ERHRHRYEVN + E G G + +EI E+
Sbjct: 447 QLVDD--SLVRQLY-NAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEV 503
Query: 266 RDHPYYVAVQFHPEYXXXXXXXXXXFLGLILAAA 299
+HP++VA QFHPE+ F G + AA+
Sbjct: 504 PNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAAS 537
>pdb|2W7T|A Chain A, Trypanosoma Brucei Ctps - Glutaminase Domain With Bound
Acivicin
Length = 273
Score = 154 bits (390), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 102/275 (37%), Positives = 137/275 (49%), Gaps = 18/275 (6%)
Query: 43 NKTVTIGLVGKYTK-FEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEY 101
N TV I VGKY + D Y S+ + EH L + Y DSE L + N E
Sbjct: 6 NPTVRIAFVGKYLQDAGDTYFSVLQCFEHCQIALQVRLDILYVDSEEL----EGPNADEA 61
Query: 102 HKTWSDFCKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVL 161
K DGI VPGGFG RG++GK AA + AR NN P+ G+ LG+Q AVIE R+V+
Sbjct: 62 RKA---LLGCDGIFVPGGFGNRGVDGKCAAAQVARMNNIPYFGVXLGMQVAVIELSRNVV 118
Query: 162 GLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHETHFKPEHKSKLKLLYGN 221
G DA++EE + H VV M + + MG M LG + + E S + +Y
Sbjct: 119 GWSDANSEEFN---KESTHQVVRIM-DCDRNKMGANMHLGACDVYIV-EKSSIMAKIYSK 173
Query: 222 KDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDE----KEVRMEIAELRDHPYYVAVQFH 277
+ + ERHRHRYEVN Y D K G + V + R+E E +++AVQFH
Sbjct: 174 SNIVVERHRHRYEVNTAYFEDLRKAGLCISAVTDPTFSSRCRVEAVENPSLRFFLAVQFH 233
Query: 278 PEYXXXXXXXXXXFLGLILAAAGKLDAYIEKECRQ 312
PE+ +L +AAA K D ++C Q
Sbjct: 234 PEFISTPMDPAPTYLSF-MAAAAKKDYVWPQKCSQ 267
>pdb|1PXY|A Chain A, Crystal Structure Of The Actin-Crosslinking Core Of
Arabidopsis Fimbrin
pdb|1PXY|B Chain B, Crystal Structure Of The Actin-Crosslinking Core Of
Arabidopsis Fimbrin
Length = 506
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Query: 74 HSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRGLEGKIAACK 133
H NR+L F + L +DP + + E K CK+ + VPG +R + K
Sbjct: 15 HINRYLGDDPFLKQFLPLDPHSNQLYELVKDGVLLCKLINVAVPGTIDERAINTKRVLNP 74
Query: 134 WARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQP 173
W R N +CL AV G SV+ + D E +P
Sbjct: 75 WERNENHT---LCLNSAKAV---GCSVVNIGTQDLAEGRP 108
>pdb|2VO1|A Chain A, Crystal Structure Of The Synthetase Domain Of Human Ctp
Synthetase
pdb|2VO1|B Chain B, Crystal Structure Of The Synthetase Domain Of Human Ctp
Synthetase
Length = 295
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 23/32 (71%)
Query: 6 SVRAKISMFCHVTPENVIFNPDVKPIYKVRML 37
SV+ KISMFCHV PE VI DV IY+V +L
Sbjct: 247 SVKEKISMFCHVEPEQVICVHDVSSIYRVPLL 278
>pdb|3IHL|A Chain A, Human Ctps2 Crystal Structure
pdb|3IHL|B Chain B, Human Ctps2 Crystal Structure
Length = 282
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 6 SVRAKISMFCHVTPENVIFNPDVKPIYKVRML 37
+V+ KISMFCHV PE VI DV Y+V +L
Sbjct: 225 AVKEKISMFCHVNPEQVICIHDVSSTYRVPVL 256
>pdb|2A9V|A Chain A, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|B Chain B, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|C Chain C, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|D Chain D, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
Length = 212
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 106 SDFCKVDGIIVPGGFGK--RGLEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGL 163
S+ +DG+++ GG L+ + K+ ++N P LGIC+G Q + +G SV+
Sbjct: 50 SELDGLDGLVLSGGAPNIDEELDKLGSVGKYIDDHNYPILGICVGAQFIALHFGASVVKA 109
Query: 164 K 164
K
Sbjct: 110 K 110
>pdb|1OX4|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX6|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX6|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
Length = 555
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 38/91 (41%), Gaps = 20/91 (21%)
Query: 63 SLTRALEHASYHSNRHLQLKYFDSELLS--MDPKTGNMAEYHKTWSDFCKVDGIIVPGGF 120
SLT A+EH Y K F+ S + P GN + VD +
Sbjct: 19 SLTNAIEHLGYEVQLVKSPKDFNISGTSRLILPGVGNYGHF---------VDNLF----- 64
Query: 121 GKRGLEGKIAACKWARENNKPFLGICLGLQA 151
RG E I + E+ KP +GIC+GLQA
Sbjct: 65 -NRGFEKPI---REYIESGKPIMGICVGLQA 91
>pdb|3GAX|A Chain A, Crystal Structure Of Monomeric Human Cystatin C Stabilized
A Aggregation
pdb|3GAX|B Chain B, Crystal Structure Of Monomeric Human Cystatin C Stabilized
A Aggregation
Length = 120
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
Query: 24 FNPDVKPIYKVRMLRIDRLNKTVTIGLVGKYTKFEDCYASLTRA---LEHASYHSNRHLQ 80
+N +Y R ++ R K + G V + E C + T+ L++ +H HL+
Sbjct: 34 YNKASNDMYHSRACQVVRARKQIVAG-VNYFLDVELCRTTCTKTQPNLDNCPFHDQPHLK 92
Query: 81 LKYFDSELLSMDPKTGNMAEYHKTWSD 107
K F S + P G M T D
Sbjct: 93 RKAFCSFQIYAVPWQGTMTLSKSTCQD 119
>pdb|2YWJ|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Methanocaldococcus Jannaschii
Length = 186
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 94 KTGNMAEYHKTWSDFCKVDGIIVPGG----FGKRGLEGKIAACKWARENNKPFLGICLGL 149
K G A+ K D +D +I+PGG GK L K + + +N P LG C G+
Sbjct: 21 KAGYEAKKVKRVEDLEGIDALIIPGGESTAIGK--LMKKYGLLEKIKNSNLPILGTCAGM 78
>pdb|3N7T|A Chain A, Crystal Structure Of A Macrophage Binding Protein From
Cocci Immitis
Length = 247
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 7/42 (16%)
Query: 105 WSDFCKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGIC 146
W DFCKVDG IV G + +A AR+ K + GI
Sbjct: 211 WDDFCKVDGRIVTGANPQ-------SATNTARDTIKVYEGIV 245
>pdb|3TQI|A Chain A, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|B Chain B, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|C Chain C, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|D Chain D, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
Length = 527
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 22/48 (45%)
Query: 113 GIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSV 160
GII+ GG L + A + E P LGIC G+Q + G V
Sbjct: 56 GIILSGGPETVTLSHTLRAPAFIFEIGCPVLGICYGMQTMAYQLGGKV 103
>pdb|1GPM|A Chain A, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|B Chain B, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|C Chain C, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|D Chain D, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
Length = 525
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 113 GIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSV 160
GII+ GG E A ++ E P G+C G+Q ++ G V
Sbjct: 53 GIILSGGPESTTEENSPRAPQYVFEAGVPVFGVCYGMQTMAMQLGGHV 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,812,216
Number of Sequences: 62578
Number of extensions: 479065
Number of successful extensions: 1006
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 961
Number of HSP's gapped (non-prelim): 25
length of query: 326
length of database: 14,973,337
effective HSP length: 99
effective length of query: 227
effective length of database: 8,778,115
effective search space: 1992632105
effective search space used: 1992632105
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)