Query psy17159
Match_columns 326
No_of_seqs 274 out of 2458
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 23:25:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17159.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17159hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0504 PyrG CTP synthase (UTP 100.0 5.2E-65 1.1E-69 485.4 23.5 283 4-303 216-531 (533)
2 KOG2387|consensus 100.0 5.6E-65 1.2E-69 476.7 23.1 309 4-316 223-565 (585)
3 PLN02327 CTP synthase 100.0 3.4E-64 7.4E-69 493.8 26.6 298 4-305 223-553 (557)
4 PRK05380 pyrG CTP synthetase; 100.0 4.7E-60 1E-64 464.0 26.9 283 4-302 216-530 (533)
5 TIGR00337 PyrG CTP synthase. C 100.0 2.5E-58 5.4E-63 451.8 24.6 277 4-297 217-525 (525)
6 PRK06186 hypothetical protein; 100.0 1.7E-52 3.7E-57 374.0 23.0 227 46-300 2-228 (229)
7 cd01746 GATase1_CTP_Synthase T 100.0 7.8E-43 1.7E-47 316.2 22.5 233 46-295 1-235 (235)
8 COG0512 PabA Anthranilate/para 100.0 8.8E-33 1.9E-37 238.0 17.0 188 46-297 2-190 (191)
9 COG0505 CarA Carbamoylphosphat 100.0 9E-31 1.9E-35 243.0 19.8 225 3-302 138-366 (368)
10 COG0118 HisH Glutamine amidotr 100.0 2E-30 4.4E-35 224.5 14.3 191 46-298 2-203 (204)
11 PRK12564 carbamoyl phosphate s 100.0 2.2E-29 4.8E-34 240.6 22.3 218 3-297 138-359 (360)
12 TIGR01368 CPSaseIIsmall carbam 100.0 2.2E-29 4.9E-34 240.2 21.8 220 3-299 134-357 (358)
13 PRK08007 para-aminobenzoate sy 100.0 1.5E-29 3.3E-34 222.3 14.8 182 48-296 2-186 (187)
14 COG2071 Predicted glutamine am 100.0 9.6E-30 2.1E-34 225.7 13.3 168 104-301 54-241 (243)
15 PRK12838 carbamoyl phosphate s 100.0 2E-28 4.4E-33 233.3 20.4 212 5-299 136-351 (354)
16 PLN02335 anthranilate synthase 100.0 1.7E-28 3.7E-33 221.0 16.2 201 43-303 16-218 (222)
17 TIGR00888 guaA_Nterm GMP synth 100.0 5.6E-28 1.2E-32 212.4 18.5 183 48-299 1-185 (188)
18 CHL00197 carA carbamoyl-phosph 100.0 1.5E-27 3.3E-32 228.8 21.8 224 3-301 140-377 (382)
19 PRK07649 para-aminobenzoate/an 100.0 2.7E-28 6E-33 215.6 15.3 187 48-299 2-189 (195)
20 TIGR00566 trpG_papA glutamine 100.0 7.1E-28 1.5E-32 211.9 16.2 183 48-296 2-187 (188)
21 CHL00101 trpG anthranilate syn 100.0 4.8E-28 1E-32 213.3 14.8 185 48-297 2-188 (190)
22 PRK06774 para-aminobenzoate sy 100.0 7.1E-28 1.5E-32 212.4 15.2 183 48-296 2-190 (191)
23 PRK06895 putative anthranilate 100.0 3.7E-27 7.9E-32 207.7 18.1 186 46-297 2-188 (190)
24 PRK05670 anthranilate synthase 99.9 4.1E-27 8.9E-32 207.2 16.4 187 47-298 1-188 (189)
25 PRK11366 puuD gamma-glutamyl-g 99.9 1E-26 2.2E-31 213.5 19.6 169 106-302 57-248 (254)
26 cd01744 GATase1_CPSase Small c 99.9 1.3E-26 2.9E-31 202.1 18.5 176 48-295 1-178 (178)
27 PRK00758 GMP synthase subunit 99.9 1.4E-26 2.9E-31 203.0 17.3 182 47-300 1-183 (184)
28 cd01742 GATase1_GMP_Synthase T 99.9 9.1E-27 2E-31 203.2 16.2 181 48-295 1-181 (181)
29 PRK07765 para-aminobenzoate sy 99.9 2.4E-26 5.2E-31 206.0 17.5 149 107-299 43-193 (214)
30 PF00117 GATase: Glutamine ami 99.9 8.6E-27 1.9E-31 205.1 13.3 188 49-297 1-191 (192)
31 PRK05637 anthranilate synthase 99.9 4.2E-26 9.1E-31 203.4 17.3 201 46-300 2-207 (208)
32 PRK08857 para-aminobenzoate sy 99.9 2.7E-26 5.7E-31 202.7 15.8 186 48-297 2-192 (193)
33 PRK13170 hisH imidazole glycer 99.9 3.3E-26 7.1E-31 202.6 15.6 188 46-296 1-195 (196)
34 PLN02771 carbamoyl-phosphate s 99.9 2.3E-25 5E-30 214.4 20.2 214 3-291 191-415 (415)
35 PRK13146 hisH imidazole glycer 99.9 6.5E-26 1.4E-30 202.6 14.6 196 46-298 2-208 (209)
36 PLN02347 GMP synthetase 99.9 2.1E-25 4.5E-30 223.2 18.8 187 47-300 12-204 (536)
37 PLN02889 oxo-acid-lyase/anthra 99.9 1.5E-25 3.2E-30 233.2 17.7 196 46-302 82-339 (918)
38 TIGR01823 PabB-fungal aminodeo 99.9 3.5E-25 7.5E-30 229.4 19.5 200 44-303 4-209 (742)
39 cd01743 GATase1_Anthranilate_S 99.9 3.7E-25 7.9E-30 193.9 16.0 146 107-295 39-184 (184)
40 TIGR01815 TrpE-clade3 anthrani 99.9 5.8E-25 1.3E-29 226.1 19.1 195 42-300 513-710 (717)
41 CHL00188 hisH imidazole glycer 99.9 5.2E-25 1.1E-29 196.6 14.9 193 46-297 2-209 (210)
42 PRK13566 anthranilate synthase 99.9 1.4E-24 3.1E-29 223.6 19.4 195 42-299 523-719 (720)
43 PRK14004 hisH imidazole glycer 99.9 1.1E-24 2.3E-29 194.6 15.6 189 48-297 2-209 (210)
44 KOG0026|consensus 99.9 5.6E-25 1.2E-29 183.3 12.4 197 47-304 20-220 (223)
45 PRK00074 guaA GMP synthase; Re 99.9 1.3E-24 2.9E-29 217.4 16.9 185 46-299 4-190 (511)
46 PRK13152 hisH imidazole glycer 99.9 2.7E-24 5.8E-29 191.1 16.6 187 48-296 2-200 (201)
47 PRK14607 bifunctional glutamin 99.9 1.4E-24 3.1E-29 218.4 16.5 187 47-299 1-190 (534)
48 PRK09522 bifunctional glutamin 99.9 3E-24 6.6E-29 215.0 17.0 190 46-302 2-194 (531)
49 PF07722 Peptidase_C26: Peptid 99.9 1.7E-24 3.7E-29 194.5 11.9 170 62-279 27-217 (217)
50 PRK13181 hisH imidazole glycer 99.9 4.7E-24 1E-28 189.2 14.4 187 48-296 2-198 (199)
51 PRK13141 hisH imidazole glycer 99.9 1.4E-23 3E-28 187.0 14.9 193 47-299 1-203 (205)
52 cd01748 GATase1_IGP_Synthase T 99.9 1.4E-23 3.1E-28 185.9 13.6 188 48-295 1-198 (198)
53 PRK13142 hisH imidazole glycer 99.9 2.9E-23 6.4E-28 182.1 12.8 176 48-297 2-187 (192)
54 PRK13525 glutamine amidotransf 99.9 1.3E-22 2.7E-27 178.6 16.7 179 46-299 2-188 (189)
55 cd01745 GATase1_2 Subgroup of 99.9 8.2E-23 1.8E-27 179.9 14.4 122 106-295 49-189 (189)
56 PRK13143 hisH imidazole glycer 99.9 1.8E-22 4E-27 179.2 16.2 190 46-298 1-198 (200)
57 PRK13527 glutamine amidotransf 99.9 2.1E-22 4.6E-27 178.8 15.3 186 46-300 1-199 (200)
58 COG0518 GuaA GMP synthase - Gl 99.9 2.4E-22 5.2E-27 177.5 14.2 184 46-296 2-191 (198)
59 PRK03619 phosphoribosylformylg 99.9 3.5E-22 7.6E-27 179.7 14.8 195 46-296 1-218 (219)
60 PRK09065 glutamine amidotransf 99.9 1.2E-21 2.5E-26 178.4 17.8 143 107-297 51-199 (237)
61 PRK06490 glutamine amidotransf 99.9 1.6E-21 3.5E-26 177.5 17.6 180 45-296 7-191 (239)
62 PLN02617 imidazole glycerol ph 99.9 2E-21 4.4E-26 194.3 18.2 196 45-300 6-212 (538)
63 TIGR01855 IMP_synth_hisH imida 99.9 1.7E-21 3.7E-26 172.4 13.4 185 48-296 1-195 (196)
64 PLN02832 glutamine amidotransf 99.9 5.8E-21 1.3E-25 173.4 15.4 196 45-300 1-216 (248)
65 TIGR03800 PLP_synth_Pdx2 pyrid 99.9 8.1E-21 1.7E-25 166.4 15.6 175 47-295 1-183 (184)
66 PRK05665 amidotransferase; Pro 99.9 1.6E-20 3.5E-25 171.0 18.0 133 107-283 54-191 (240)
67 cd01741 GATase1_1 Subgroup of 99.9 9.4E-21 2E-25 166.3 15.9 138 107-295 43-188 (188)
68 PRK07053 glutamine amidotransf 99.9 4.3E-20 9.4E-25 167.7 18.5 180 46-296 3-190 (234)
69 cd01747 GATase1_Glutamyl_Hydro 99.8 3E-20 6.5E-25 172.3 15.8 183 62-286 23-220 (273)
70 PRK07567 glutamine amidotransf 99.8 6.5E-20 1.4E-24 167.3 16.7 132 107-282 48-194 (242)
71 TIGR01737 FGAM_synth_I phospho 99.8 1E-19 2.2E-24 164.7 15.1 193 46-296 1-225 (227)
72 KOG1224|consensus 99.8 8.8E-20 1.9E-24 175.7 12.7 200 44-302 13-221 (767)
73 KOG0370|consensus 99.8 4.1E-19 8.8E-24 179.9 16.9 206 16-302 149-356 (1435)
74 PRK08250 glutamine amidotransf 99.8 1.4E-18 3.1E-23 157.9 18.8 140 107-297 42-193 (235)
75 cd01749 GATase1_PB Glutamine A 99.8 4.2E-19 9E-24 155.5 12.7 173 48-294 1-182 (183)
76 COG0311 PDX2 Predicted glutami 99.8 1.4E-18 3.1E-23 148.1 11.7 182 46-296 1-191 (194)
77 KOG0623|consensus 99.8 6E-19 1.3E-23 162.4 9.3 192 47-296 3-206 (541)
78 PRK13526 glutamine amidotransf 99.8 3.2E-18 6.9E-23 148.0 11.7 169 46-291 3-176 (179)
79 KOG1622|consensus 99.7 3.4E-18 7.4E-23 162.3 9.4 180 46-298 17-204 (552)
80 PF01174 SNO: SNO glutamine am 99.6 8.5E-16 1.8E-20 132.5 7.8 174 56-298 3-186 (188)
81 PRK01175 phosphoribosylformylg 99.6 2.5E-14 5.5E-19 131.6 17.5 210 45-296 3-255 (261)
82 KOG3179|consensus 99.6 1.1E-14 2.3E-19 125.8 10.5 136 106-282 55-196 (245)
83 COG0047 PurL Phosphoribosylfor 99.6 3E-13 6.5E-18 119.5 18.8 197 45-296 2-228 (231)
84 cd01740 GATase1_FGAR_AT Type 1 99.6 6.3E-14 1.4E-18 127.7 13.6 188 49-284 2-218 (238)
85 PRK05368 homoserine O-succinyl 99.5 2.2E-13 4.8E-18 127.3 16.8 207 45-299 35-252 (302)
86 KOG3210|consensus 99.4 7.7E-13 1.7E-17 111.1 10.6 107 46-174 12-131 (226)
87 PF13507 GATase_5: CobB/CobQ-l 99.2 8.1E-11 1.7E-15 108.2 11.0 200 46-285 2-233 (259)
88 cd01750 GATase1_CobQ Type 1 gl 99.1 1E-10 2.3E-15 103.3 7.8 83 48-156 1-89 (194)
89 PRK06278 cobyrinic acid a,c-di 99.1 5.2E-10 1.1E-14 111.1 13.4 78 46-155 1-81 (476)
90 KOG1559|consensus 99.1 6.6E-11 1.4E-15 105.1 6.2 154 106-284 107-274 (340)
91 TIGR01857 FGAM-synthase phosph 99.1 4.1E-09 9E-14 114.0 19.0 212 44-285 976-1219(1239)
92 PLN03206 phosphoribosylformylg 99.0 1.3E-08 2.8E-13 110.9 17.0 206 43-284 1035-1275(1307)
93 PRK05297 phosphoribosylformylg 98.9 1.9E-08 4E-13 110.5 16.6 197 44-284 1034-1262(1290)
94 TIGR01735 FGAM_synt phosphorib 98.9 4.2E-08 9.1E-13 107.6 16.2 92 44-155 1054-1160(1310)
95 cd03130 GATase1_CobB Type 1 gl 98.9 7.3E-09 1.6E-13 91.9 8.6 91 58-170 10-112 (198)
96 PF04204 HTS: Homoserine O-suc 98.6 2.2E-06 4.9E-11 79.8 15.0 210 44-302 33-254 (298)
97 PRK01077 cobyrinic acid a,c-di 98.5 5.6E-07 1.2E-11 89.5 10.1 100 45-167 245-356 (451)
98 TIGR00379 cobB cobyrinic acid 98.5 4.1E-07 8.8E-12 90.4 8.1 89 45-156 244-338 (449)
99 TIGR01739 tegu_FGAM_synt herpe 98.5 4.5E-06 9.7E-11 91.6 16.4 92 43-155 927-1034(1202)
100 PHA03366 FGAM-synthase; Provis 98.5 3.4E-06 7.4E-11 92.9 15.5 93 42-155 1025-1133(1304)
101 PRK00784 cobyric acid synthase 98.4 6E-07 1.3E-11 90.2 7.4 85 45-156 251-342 (488)
102 PF07685 GATase_3: CobB/CobQ-l 98.3 8.1E-07 1.8E-11 75.9 4.4 50 107-156 4-59 (158)
103 TIGR00313 cobQ cobyric acid sy 98.2 1.9E-06 4E-11 86.3 6.6 50 107-156 281-336 (475)
104 TIGR01001 metA homoserine O-su 98.2 4.9E-05 1.1E-09 70.6 14.8 205 45-299 35-251 (300)
105 cd03146 GAT1_Peptidase_E Type 98.2 5.4E-06 1.2E-10 74.3 7.7 93 44-155 30-130 (212)
106 PF06418 CTP_synth_N: CTP synt 98.0 1.2E-06 2.7E-11 79.6 0.9 33 4-36 217-249 (276)
107 PRK13896 cobyrinic acid a,c-di 98.0 1.4E-05 3.1E-10 78.8 7.8 87 46-156 234-325 (433)
108 cd03144 GATase1_ScBLP_like Typ 98.0 1.1E-05 2.3E-10 65.2 5.3 43 109-152 43-90 (114)
109 cd01653 GATase1 Type 1 glutami 97.9 4.7E-05 1E-09 58.3 7.9 46 107-152 43-92 (115)
110 cd03131 GATase1_HTS Type 1 glu 97.9 4.4E-05 9.5E-10 66.3 7.1 52 108-159 60-118 (175)
111 PF09825 BPL_N: Biotin-protein 97.9 0.0029 6.2E-08 61.2 20.2 93 46-154 1-97 (367)
112 COG1492 CobQ Cobyric acid synt 97.8 3.6E-05 7.7E-10 76.0 5.5 87 43-155 249-341 (486)
113 PRK05282 (alpha)-aspartyl dipe 97.6 0.00014 3.1E-09 66.0 7.3 51 106-156 75-130 (233)
114 PRK11780 isoprenoid biosynthes 97.6 0.00012 2.5E-09 66.0 5.9 49 108-156 83-145 (217)
115 KOG1907|consensus 97.6 0.0014 3E-08 68.3 13.8 93 43-155 1056-1163(1320)
116 cd03133 GATase1_ES1 Type 1 glu 97.5 0.00018 4E-09 64.5 6.0 55 108-162 80-150 (213)
117 cd03128 GAT_1 Type 1 glutamine 97.5 0.00014 3.1E-09 53.0 3.8 46 107-152 43-92 (92)
118 COG3442 Predicted glutamine am 97.3 0.0044 9.5E-08 55.1 12.1 57 109-165 51-119 (250)
119 cd03169 GATase1_PfpI_1 Type 1 97.2 0.00041 8.8E-09 60.2 4.9 46 110-155 76-124 (180)
120 cd03147 GATase1_Ydr533c_like T 97.1 0.0008 1.7E-08 61.1 5.8 48 108-155 92-143 (231)
121 cd03132 GATase1_catalase Type 97.1 0.0044 9.4E-08 51.5 9.2 46 110-155 62-111 (142)
122 TIGR01382 PfpI intracellular p 97.1 0.00081 1.8E-08 57.3 4.8 46 110-155 60-108 (166)
123 cd03134 GATase1_PfpI_like A ty 96.9 0.0015 3.2E-08 55.6 5.0 47 109-155 61-110 (165)
124 COG0693 ThiJ Putative intracel 96.8 0.0016 3.4E-08 56.9 4.7 47 109-155 65-115 (188)
125 PF01965 DJ-1_PfpI: DJ-1/PfpI 96.8 0.00092 2E-08 56.1 2.8 47 109-155 36-87 (147)
126 COG1797 CobB Cobyrinic acid a, 96.8 0.025 5.5E-07 55.3 12.9 88 46-156 246-340 (451)
127 PRK04155 chaperone protein Hch 96.7 0.0023 5E-08 60.0 5.0 48 108-155 145-196 (287)
128 cd03148 GATase1_EcHsp31_like T 96.7 0.0027 5.9E-08 57.7 5.3 48 108-155 94-145 (232)
129 cd03141 GATase1_Hsp31_like Typ 96.7 0.0031 6.7E-08 56.8 5.5 49 108-156 88-140 (221)
130 cd03129 GAT1_Peptidase_E_like 96.6 0.012 2.7E-07 52.3 8.7 95 44-155 28-130 (210)
131 cd03137 GATase1_AraC_1 AraC tr 96.6 0.005 1.1E-07 53.5 6.0 49 107-155 61-112 (187)
132 cd03140 GATase1_PfpI_3 Type 1 96.5 0.0051 1.1E-07 52.8 5.4 47 109-155 59-107 (170)
133 cd03138 GATase1_AraC_2 AraC tr 96.4 0.0071 1.5E-07 52.9 5.8 49 107-155 66-120 (195)
134 cd03135 GATase1_DJ-1 Type 1 gl 96.1 0.0083 1.8E-07 50.6 4.8 47 109-155 59-109 (163)
135 COG1897 MetA Homoserine trans- 96.0 0.17 3.8E-06 46.1 12.7 194 45-284 35-242 (307)
136 PRK11574 oxidative-stress-resi 95.9 0.016 3.5E-07 50.8 5.8 46 109-154 65-114 (196)
137 PRK11249 katE hydroperoxidase 95.9 0.072 1.6E-06 56.0 11.0 102 44-155 596-707 (752)
138 cd03139 GATase1_PfpI_2 Type 1 95.8 0.014 3E-07 50.3 4.9 48 108-155 60-110 (183)
139 cd03136 GATase1_AraC_ArgR_like 95.7 0.021 4.5E-07 49.5 5.7 49 107-155 61-111 (185)
140 PF13278 DUF4066: Putative ami 95.7 0.011 2.4E-07 50.3 3.9 49 107-155 58-109 (166)
141 TIGR01383 not_thiJ DJ-1 family 95.7 0.017 3.6E-07 49.7 4.7 48 108-155 61-112 (179)
142 PRK09393 ftrA transcriptional 94.9 0.052 1.1E-06 51.4 5.9 49 107-155 72-122 (322)
143 KOG2764|consensus 93.5 0.13 2.8E-06 46.3 4.9 46 109-154 66-115 (247)
144 TIGR02069 cyanophycinase cyano 92.6 0.63 1.4E-05 42.8 8.3 98 45-155 28-132 (250)
145 cd03145 GAT1_cyanophycinase Ty 92.4 0.56 1.2E-05 42.1 7.6 99 44-155 28-133 (217)
146 COG4285 Uncharacterized conser 92.3 0.75 1.6E-05 41.1 7.9 88 47-150 2-93 (253)
147 COG3340 PepE Peptidase E [Amin 90.3 0.82 1.8E-05 40.8 6.2 48 106-153 80-132 (224)
148 COG4090 Uncharacterized protei 88.9 1 2.3E-05 36.9 5.3 47 107-155 82-130 (154)
149 PRK11104 hemG protoporphyrinog 87.7 3.7 8E-05 35.5 8.5 84 46-149 1-88 (177)
150 PRK09271 flavodoxin; Provision 87.6 4.2 9E-05 34.4 8.7 59 46-118 1-59 (160)
151 PRK01911 ppnK inorganic polyph 86.9 3.1 6.8E-05 39.1 8.1 36 109-149 63-98 (292)
152 PRK03372 ppnK inorganic polyph 84.8 5.1 0.00011 38.0 8.4 36 109-149 71-106 (306)
153 PRK02155 ppnK NAD(+)/NADH kina 82.9 8.1 0.00017 36.3 8.9 36 109-149 62-97 (291)
154 COG3155 ElbB Uncharacterized p 82.8 2.1 4.6E-05 36.6 4.4 52 109-160 84-149 (217)
155 PF03575 Peptidase_S51: Peptid 82.4 0.94 2E-05 38.1 2.2 49 104-152 29-82 (154)
156 PF06283 ThuA: Trehalose utili 82.0 9.4 0.0002 33.8 8.7 89 47-149 1-91 (217)
157 PRK03708 ppnK inorganic polyph 81.0 8 0.00017 36.1 8.1 34 110-149 57-90 (277)
158 PRK04539 ppnK inorganic polyph 80.2 13 0.00029 35.0 9.3 36 109-149 67-102 (296)
159 COG4977 Transcriptional regula 79.1 4.3 9.4E-05 38.8 5.7 49 107-155 73-124 (328)
160 PRK14077 pnk inorganic polypho 78.7 11 0.00024 35.4 8.2 36 109-149 63-98 (287)
161 cd06300 PBP1_ABC_sugar_binding 76.1 20 0.00044 32.1 9.1 74 60-145 13-91 (272)
162 PRK03378 ppnK inorganic polyph 76.1 13 0.00028 35.0 7.9 36 109-149 62-97 (292)
163 PRK06756 flavodoxin; Provision 74.7 12 0.00026 30.9 6.7 56 46-118 2-57 (148)
164 PRK02649 ppnK inorganic polyph 74.4 16 0.00035 34.6 8.1 36 109-149 67-102 (305)
165 PRK05568 flavodoxin; Provision 72.2 36 0.00077 27.6 8.9 55 47-119 3-57 (142)
166 PRK01185 ppnK inorganic polyph 70.8 28 0.0006 32.4 8.7 31 110-148 52-82 (271)
167 PRK14076 pnk inorganic polypho 70.7 18 0.00039 37.3 8.2 37 108-149 346-382 (569)
168 PRK01231 ppnK inorganic polyph 70.3 25 0.00054 33.1 8.4 36 109-149 61-96 (295)
169 TIGR02667 moaB_proteo molybden 69.8 14 0.00031 31.4 6.2 33 109-141 62-94 (163)
170 PRK04885 ppnK inorganic polyph 69.4 19 0.00041 33.4 7.2 36 109-149 34-71 (265)
171 TIGR01754 flav_RNR ribonucleot 69.3 30 0.00065 28.3 7.9 32 46-79 1-32 (140)
172 PRK06703 flavodoxin; Provision 67.9 17 0.00036 30.2 6.1 55 46-118 2-56 (151)
173 TIGR01755 flav_wrbA NAD(P)H:qu 67.8 35 0.00075 29.9 8.4 38 46-85 1-39 (197)
174 COG0521 MoaB Molybdopterin bio 66.2 9.7 0.00021 32.9 4.3 31 111-141 68-98 (169)
175 PRK05569 flavodoxin; Provision 65.9 17 0.00037 29.6 5.7 54 47-118 3-56 (141)
176 PF03698 UPF0180: Uncharacteri 65.6 11 0.00023 28.4 3.9 43 46-119 2-44 (80)
177 PRK03767 NAD(P)H:quinone oxido 65.0 48 0.001 29.0 8.7 71 46-119 2-78 (200)
178 PRK04761 ppnK inorganic polyph 64.4 7.2 0.00016 35.8 3.4 38 107-149 22-59 (246)
179 COG0061 nadF NAD kinase [Coenz 63.9 35 0.00076 31.8 8.0 35 109-148 54-88 (281)
180 PF03358 FMN_red: NADPH-depend 63.8 5.5 0.00012 32.9 2.4 69 46-118 1-78 (152)
181 KOG3974|consensus 63.7 13 0.00029 34.4 4.8 46 104-149 95-142 (306)
182 PLN02929 NADH kinase 63.4 25 0.00054 33.2 6.9 37 107-149 61-97 (301)
183 PLN02727 NAD kinase 63.2 31 0.00067 37.5 8.1 36 109-149 742-777 (986)
184 PRK02645 ppnK inorganic polyph 63.0 42 0.00091 31.7 8.4 34 109-147 56-89 (305)
185 TIGR01012 Sa_S2_E_A ribosomal 62.8 39 0.00083 29.9 7.5 77 45-146 61-138 (196)
186 PF10087 DUF2325: Uncharacteri 62.8 41 0.00089 25.7 7.0 89 47-153 1-90 (97)
187 PRK14075 pnk inorganic polypho 60.9 31 0.00068 31.7 6.9 33 109-149 40-72 (256)
188 TIGR01753 flav_short flavodoxi 60.8 71 0.0015 25.5 8.5 49 54-118 5-53 (140)
189 cd00885 cinA Competence-damage 60.6 24 0.00053 30.3 5.8 48 107-156 55-102 (170)
190 cd06320 PBP1_allose_binding Pe 60.4 59 0.0013 29.0 8.7 74 60-145 13-88 (275)
191 PRK09417 mogA molybdenum cofac 60.2 32 0.0007 30.3 6.6 32 110-141 66-97 (193)
192 COG0655 WrbA Multimeric flavod 59.9 33 0.00072 30.2 6.8 91 48-142 4-105 (207)
193 PRK00561 ppnK inorganic polyph 59.4 10 0.00023 35.0 3.5 36 109-149 32-67 (259)
194 PLN02935 Bifunctional NADH kin 58.8 51 0.0011 33.5 8.4 36 109-149 261-296 (508)
195 COG4242 CphB Cyanophycinase an 58.6 17 0.00036 33.5 4.5 50 105-154 101-155 (293)
196 COG2327 WcaK Polysaccharide py 57.7 52 0.0011 32.2 8.1 54 104-157 83-151 (385)
197 cd00886 MogA_MoaB MogA_MoaB fa 57.6 34 0.00073 28.6 6.1 32 110-141 61-92 (152)
198 PRK10017 colanic acid biosynth 56.6 79 0.0017 31.4 9.4 37 46-86 1-43 (426)
199 PF11965 DUF3479: Domain of un 55.4 48 0.001 28.5 6.7 98 46-153 1-99 (164)
200 PRK01215 competence damage-ind 54.9 20 0.00044 33.1 4.7 48 107-156 59-106 (264)
201 PRK11921 metallo-beta-lactamas 54.5 23 0.00051 34.5 5.3 67 38-118 240-308 (394)
202 PF13689 DUF4154: Domain of un 54.2 1E+02 0.0023 25.4 8.5 75 43-148 25-100 (145)
203 PTZ00254 40S ribosomal protein 52.7 57 0.0012 30.0 7.1 34 107-146 115-148 (249)
204 PRK03094 hypothetical protein; 51.9 30 0.00064 26.1 4.2 43 46-119 2-44 (80)
205 PF08937 DUF1863: MTH538 TIR-l 51.8 10 0.00023 30.7 2.0 45 104-148 64-108 (130)
206 PRK04020 rps2P 30S ribosomal p 51.4 73 0.0016 28.4 7.4 77 45-146 67-144 (204)
207 cd06316 PBP1_ABC_sugar_binding 50.3 1.1E+02 0.0024 27.7 8.9 72 61-145 14-87 (294)
208 PRK09267 flavodoxin FldA; Vali 49.1 50 0.0011 27.8 5.9 53 46-118 2-54 (169)
209 cd06305 PBP1_methylthioribose_ 49.0 1.1E+02 0.0024 27.1 8.5 71 61-145 14-86 (273)
210 PF09897 DUF2124: Uncharacteri 47.8 9.5 0.00021 32.1 1.2 101 44-155 18-125 (147)
211 cd06312 PBP1_ABC_sugar_binding 47.7 1.2E+02 0.0025 27.1 8.5 76 59-147 13-90 (271)
212 cd06310 PBP1_ABC_sugar_binding 47.6 1.4E+02 0.003 26.5 8.9 85 47-145 1-88 (273)
213 cd01575 PBP1_GntR Ligand-bindi 47.3 1.7E+02 0.0036 25.7 9.4 70 60-145 13-84 (268)
214 COG4126 Hydantoin racemase [Am 47.1 2.1E+02 0.0046 25.9 9.6 44 110-160 69-112 (230)
215 PF14359 DUF4406: Domain of un 46.3 63 0.0014 24.8 5.5 36 106-143 55-90 (92)
216 cd06267 PBP1_LacI_sugar_bindin 45.0 1.2E+02 0.0025 26.4 7.9 71 59-145 12-84 (264)
217 PRK02231 ppnK inorganic polyph 44.9 24 0.00052 32.8 3.5 35 109-148 41-75 (272)
218 TIGR03609 S_layer_CsaB polysac 44.1 53 0.0011 30.4 5.7 45 104-148 58-108 (298)
219 PRK00549 competence damage-ind 44.1 50 0.0011 32.6 5.8 48 107-156 56-103 (414)
220 PF13407 Peripla_BP_4: Peripla 43.8 1.5E+02 0.0032 26.1 8.5 75 61-148 13-89 (257)
221 PF09075 STb_secrete: Heat-sta 43.6 5.9 0.00013 25.5 -0.5 17 141-157 31-47 (48)
222 COG0252 AnsB L-asparaginase/ar 42.5 57 0.0012 31.6 5.7 36 109-145 253-289 (351)
223 cd01391 Periplasmic_Binding_Pr 42.3 1.9E+02 0.0042 24.6 8.8 75 60-147 14-90 (269)
224 cd06309 PBP1_YtfQ_like Peripla 41.3 1.8E+02 0.0038 25.9 8.6 73 60-146 13-87 (273)
225 COG0771 MurD UDP-N-acetylmuram 41.1 1.2E+02 0.0027 30.3 7.9 26 45-74 7-32 (448)
226 PRK05395 3-dehydroquinate dehy 40.8 1.4E+02 0.003 25.2 7.0 54 54-119 23-76 (146)
227 cd06292 PBP1_LacI_like_10 Liga 40.7 2.5E+02 0.0054 24.8 9.5 76 59-145 12-89 (273)
228 PRK10355 xylF D-xylose transpo 40.6 2E+02 0.0044 27.0 9.2 87 44-145 24-112 (330)
229 cd06295 PBP1_CelR Ligand bindi 40.4 2.1E+02 0.0046 25.3 9.0 68 60-145 24-93 (275)
230 COG0052 RpsB Ribosomal protein 39.6 1E+02 0.0022 28.3 6.5 20 127-146 167-186 (252)
231 cd01538 PBP1_ABC_xylose_bindin 39.3 1.9E+02 0.0041 26.1 8.6 71 61-145 14-86 (288)
232 PRK07308 flavodoxin; Validated 38.8 1.3E+02 0.0029 24.5 6.8 52 47-116 3-54 (146)
233 COG0540 PyrB Aspartate carbamo 38.3 1.4E+02 0.0031 28.3 7.5 74 6-90 114-196 (316)
234 cd06321 PBP1_ABC_sugar_binding 38.2 2.3E+02 0.0049 25.0 8.9 74 60-145 13-88 (271)
235 PRK12359 flavodoxin FldB; Prov 38.1 86 0.0019 27.0 5.6 53 46-118 1-53 (172)
236 PF01220 DHquinase_II: Dehydro 38.0 82 0.0018 26.3 5.2 53 54-119 22-75 (140)
237 COG2984 ABC-type uncharacteriz 38.0 1.1E+02 0.0025 29.1 6.8 87 46-148 160-248 (322)
238 cd06318 PBP1_ABC_sugar_binding 37.9 2.2E+02 0.0048 25.3 8.8 72 60-145 13-86 (282)
239 TIGR02153 gatD_arch glutamyl-t 37.9 61 0.0013 32.0 5.3 35 110-145 299-334 (404)
240 PRK04183 glutamyl-tRNA(Gln) am 37.7 60 0.0013 32.2 5.2 36 109-145 311-347 (419)
241 PRK13015 3-dehydroquinate dehy 37.6 1.6E+02 0.0034 24.9 6.8 54 54-119 23-76 (146)
242 cd05014 SIS_Kpsf KpsF-like pro 37.5 2E+02 0.0043 22.5 9.0 38 108-147 45-82 (128)
243 TIGR03436 acidobact_VWFA VWFA- 37.2 58 0.0013 30.1 4.8 48 113-160 168-235 (296)
244 PF09152 DUF1937: Domain of un 37.1 27 0.00059 28.2 2.2 37 107-143 76-112 (116)
245 TIGR00259 thylakoid_BtpA membr 37.0 74 0.0016 29.4 5.3 33 110-143 171-204 (257)
246 PRK10342 glycerate kinase I; P 36.9 63 0.0014 31.7 5.1 44 104-148 278-325 (381)
247 TIGR00200 cinA_nterm competenc 36.2 76 0.0017 31.4 5.7 16 107-122 56-71 (413)
248 PF13788 DUF4180: Domain of un 36.1 46 0.001 26.7 3.4 36 45-85 69-104 (113)
249 PRK06242 flavodoxin; Provision 35.8 1.7E+02 0.0036 23.8 7.0 24 46-71 1-25 (150)
250 smart00852 MoCF_biosynth Proba 35.6 34 0.00075 27.7 2.7 34 108-141 55-88 (135)
251 cd00758 MoCF_BD MoCF_BD: molyb 35.3 87 0.0019 25.4 5.1 30 107-136 55-84 (133)
252 COG1879 RbsB ABC-type sugar tr 35.2 3.4E+02 0.0074 25.0 9.8 91 46-148 34-125 (322)
253 cd01536 PBP1_ABC_sugar_binding 34.8 2.7E+02 0.0059 24.1 8.7 73 59-145 12-86 (267)
254 PRK09461 ansA cytoplasmic aspa 34.6 60 0.0013 31.1 4.5 36 110-145 233-270 (335)
255 PF10662 PduV-EutP: Ethanolami 34.2 92 0.002 26.1 5.0 69 46-117 2-70 (143)
256 cd01451 vWA_Magnesium_chelatas 34.0 1E+02 0.0022 26.1 5.5 55 113-167 102-168 (178)
257 smart00870 Asparaginase Aspara 34.0 83 0.0018 29.9 5.4 35 110-145 235-270 (323)
258 TIGR00045 glycerate kinase. Th 33.9 73 0.0016 31.1 5.0 44 104-148 277-324 (375)
259 PRK03673 hypothetical protein; 33.8 98 0.0021 30.5 5.9 16 107-122 57-72 (396)
260 PRK03604 moaC bifunctional mol 33.4 2.1E+02 0.0046 27.2 7.9 28 109-136 214-241 (312)
261 cd01425 RPS2 Ribosomal protein 33.2 2E+02 0.0044 25.0 7.4 32 109-146 126-157 (193)
262 PRK12311 rpsB 30S ribosomal pr 32.9 88 0.0019 30.0 5.3 31 110-146 152-182 (326)
263 TIGR00520 asnASE_II L-asparagi 32.8 89 0.0019 30.2 5.4 35 110-145 262-297 (349)
264 PF03437 BtpA: BtpA family; I 32.7 73 0.0016 29.4 4.6 38 109-149 171-209 (254)
265 cd01537 PBP1_Repressors_Sugar_ 32.3 3.1E+02 0.0068 23.5 8.6 83 47-145 1-85 (264)
266 PRK09932 glycerate kinase II; 32.2 81 0.0018 30.9 5.0 44 104-148 278-325 (381)
267 cd06322 PBP1_ABC_sugar_binding 32.1 3.5E+02 0.0075 23.7 9.0 72 60-145 13-86 (267)
268 PRK09004 FMN-binding protein M 32.0 1.3E+02 0.0027 25.0 5.6 33 47-81 3-35 (146)
269 TIGR01819 F420_cofD LPPG:FO 2- 31.7 43 0.00092 31.6 2.9 44 102-146 174-219 (297)
270 cd01539 PBP1_GGBP Periplasmic 31.6 3.7E+02 0.0079 24.5 9.3 73 61-145 14-88 (303)
271 PRK00779 ornithine carbamoyltr 31.5 2.7E+02 0.0059 26.2 8.4 96 6-117 110-224 (304)
272 PF04392 ABC_sub_bind: ABC tra 31.4 59 0.0013 30.1 3.9 87 46-147 132-219 (294)
273 PRK15427 colanic acid biosynth 31.2 5E+02 0.011 25.2 10.5 45 104-148 292-337 (406)
274 cd06301 PBP1_rhizopine_binding 31.1 2.9E+02 0.0063 24.3 8.3 72 60-145 13-87 (272)
275 PRK09701 D-allose transporter 30.8 4E+02 0.0087 24.4 9.5 86 47-145 26-113 (311)
276 TIGR00177 molyb_syn molybdenum 30.6 64 0.0014 26.7 3.6 28 108-135 64-91 (144)
277 PRK00856 pyrB aspartate carbam 30.5 3.1E+02 0.0068 25.9 8.6 100 5-118 112-221 (305)
278 cd06282 PBP1_GntR_like_2 Ligan 30.5 3.6E+02 0.0079 23.4 9.2 72 60-146 13-86 (266)
279 KOG0402|consensus 30.2 62 0.0014 24.5 3.0 17 44-60 4-20 (92)
280 PRK05452 anaerobic nitric oxid 30.1 99 0.0021 31.2 5.4 61 44-118 250-312 (479)
281 COG0391 Uncharacterized conser 30.0 56 0.0012 31.3 3.4 41 103-146 182-228 (323)
282 cd06302 PBP1_LsrB_Quorum_Sensi 30.0 3.2E+02 0.0069 24.8 8.6 74 59-145 12-87 (298)
283 cd06299 PBP1_LacI_like_13 Liga 29.9 2.8E+02 0.0061 24.2 8.0 69 60-144 13-83 (265)
284 cd06274 PBP1_FruR Ligand bindi 29.7 3.4E+02 0.0074 23.7 8.5 70 60-145 13-84 (264)
285 COG4635 HemG Flavodoxin [Energ 29.6 2.2E+02 0.0048 24.5 6.5 86 46-149 1-89 (175)
286 PF12641 Flavodoxin_3: Flavodo 29.5 1.4E+02 0.003 25.4 5.5 74 54-148 4-78 (160)
287 PRK03670 competence damage-ind 29.4 1.2E+02 0.0025 28.0 5.3 25 110-134 60-84 (252)
288 COG0431 Predicted flavoprotein 29.3 3.7E+02 0.008 23.1 8.5 50 98-147 55-108 (184)
289 cd06319 PBP1_ABC_sugar_binding 29.1 3.9E+02 0.0085 23.5 8.8 73 59-145 12-86 (277)
290 COG1570 XseA Exonuclease VII, 28.6 3.5E+02 0.0077 27.0 8.7 92 45-144 135-230 (440)
291 cd00411 Asparaginase Asparagin 28.2 78 0.0017 30.1 4.1 35 110-145 233-268 (323)
292 PF01513 NAD_kinase: ATP-NAD k 27.7 26 0.00056 32.6 0.7 36 109-149 75-110 (285)
293 PRK06444 prephenate dehydrogen 27.4 75 0.0016 28.0 3.6 25 46-74 1-26 (197)
294 PF00994 MoCF_biosynth: Probab 27.4 33 0.00071 28.2 1.3 31 107-137 53-83 (144)
295 TIGR02634 xylF D-xylose ABC tr 27.0 3.5E+02 0.0077 24.7 8.3 73 59-145 11-85 (302)
296 PF00710 Asparaginase: Asparag 26.6 66 0.0014 30.4 3.3 37 109-146 223-260 (313)
297 COG3199 Predicted inorganic po 26.6 60 0.0013 31.2 3.0 38 110-153 100-137 (355)
298 cd06284 PBP1_LacI_like_6 Ligan 26.5 3.6E+02 0.0078 23.4 8.1 70 60-146 13-84 (267)
299 KOG4180|consensus 26.4 74 0.0016 30.5 3.5 34 107-145 102-135 (395)
300 PRK10653 D-ribose transporter 26.0 4.9E+02 0.011 23.4 9.3 84 46-145 27-113 (295)
301 cd06313 PBP1_ABC_sugar_binding 25.8 3.7E+02 0.008 23.9 8.1 71 61-145 14-86 (272)
302 cd03522 MoeA_like MoeA_like. T 25.1 1.5E+02 0.0032 28.2 5.3 24 111-134 220-243 (312)
303 PRK11096 ansB L-asparaginase I 25.1 1.7E+02 0.0036 28.3 5.8 35 110-145 256-291 (347)
304 COG1214 Inactive homolog of me 25.1 1E+02 0.0022 27.7 4.0 40 108-147 56-97 (220)
305 cd01540 PBP1_arabinose_binding 25.0 4E+02 0.0087 23.7 8.2 72 60-146 13-86 (289)
306 TIGR01752 flav_long flavodoxin 25.0 3.8E+02 0.0082 22.5 7.5 52 47-118 1-52 (167)
307 cd01544 PBP1_GalR Ligand-bindi 24.8 3.6E+02 0.0079 23.8 7.8 64 60-146 18-81 (270)
308 cd07378 MPP_ACP5 Homo sapiens 24.7 3.7E+02 0.0081 24.2 7.9 26 47-72 2-28 (277)
309 TIGR00853 pts-lac PTS system, 24.5 3.2E+02 0.007 20.8 7.8 77 45-145 3-81 (95)
310 PRK08367 porA pyruvate ferredo 24.1 3.5E+02 0.0075 26.6 7.9 88 46-149 262-355 (394)
311 PF00266 Aminotran_5: Aminotra 24.1 4E+02 0.0086 25.2 8.3 132 5-153 46-181 (371)
312 TIGR02690 resist_ArsH arsenica 24.0 2.7E+02 0.0059 25.0 6.6 18 101-118 81-98 (219)
313 PRK13606 LPPG:FO 2-phospho-L-l 24.0 71 0.0015 30.3 2.9 44 102-146 177-222 (303)
314 COG0426 FpaA Uncharacterized f 24.0 2.8E+02 0.006 27.3 7.0 58 47-118 248-305 (388)
315 PRK11303 DNA-binding transcrip 24.0 5.6E+02 0.012 23.4 9.9 85 44-145 60-147 (328)
316 CHL00067 rps2 ribosomal protei 23.8 1.1E+02 0.0024 27.7 4.1 31 110-146 161-191 (230)
317 cd07388 MPP_Tt1561 Thermus the 23.4 5.1E+02 0.011 23.2 8.3 19 45-66 4-22 (224)
318 PRK00286 xseA exodeoxyribonucl 23.0 2.4E+02 0.0051 27.9 6.6 87 45-144 135-229 (438)
319 TIGR02826 RNR_activ_nrdG3 anae 23.0 97 0.0021 25.9 3.3 30 111-142 62-91 (147)
320 KOG2708|consensus 22.9 1.7E+02 0.0036 26.9 4.8 47 108-154 68-118 (336)
321 COG0303 MoeA Molybdopterin bio 22.6 82 0.0018 31.1 3.2 17 107-123 239-255 (404)
322 COG2870 RfaE ADP-heptose synth 22.6 6.3E+02 0.014 25.2 9.0 35 107-143 140-175 (467)
323 PRK14690 molybdopterin biosynt 22.5 1.4E+02 0.0031 29.5 4.9 26 108-133 257-282 (419)
324 cd07023 S49_Sppa_N_C Signal pe 22.3 2.7E+02 0.0059 24.3 6.3 23 128-150 55-77 (208)
325 cd00466 DHQase_II Dehydroquina 22.2 2.6E+02 0.0057 23.3 5.6 53 54-119 21-74 (140)
326 COG0434 SgcQ Predicted TIM-bar 22.2 95 0.0021 28.5 3.2 86 52-148 123-217 (263)
327 PRK15408 autoinducer 2-binding 22.1 2.9E+02 0.0063 26.1 6.8 87 46-146 24-112 (336)
328 cd06277 PBP1_LacI_like_1 Ligan 21.8 2.8E+02 0.006 24.4 6.4 69 60-145 16-86 (268)
329 cd06311 PBP1_ABC_sugar_binding 21.6 5.6E+02 0.012 22.5 9.4 73 61-145 14-91 (274)
330 cd06315 PBP1_ABC_sugar_binding 21.6 5.8E+02 0.013 22.7 9.0 72 61-146 15-88 (280)
331 PRK10333 5-formyltetrahydrofol 21.5 73 0.0016 27.5 2.3 46 108-153 107-159 (182)
332 COG0078 ArgF Ornithine carbamo 21.5 2E+02 0.0044 27.3 5.4 69 5-80 110-181 (310)
333 PRK01710 murD UDP-N-acetylmura 21.5 3.3E+02 0.0071 27.0 7.3 26 45-74 14-39 (458)
334 cd06326 PBP1_STKc_like Type I 21.4 5.3E+02 0.012 23.5 8.4 35 110-149 68-102 (336)
335 PF02601 Exonuc_VII_L: Exonucl 21.2 2.1E+02 0.0045 26.9 5.6 91 44-144 13-112 (319)
336 PF15442 DUF4629: Domain of un 21.2 37 0.0008 28.6 0.4 20 135-154 112-139 (150)
337 PF04016 DUF364: Domain of unk 21.2 54 0.0012 27.4 1.4 63 43-119 9-71 (147)
338 cd06283 PBP1_RegR_EndR_KdgR_li 21.1 4.7E+02 0.01 22.7 7.7 70 60-145 13-84 (267)
339 PRK06425 histidinol-phosphate 21.0 6.8E+02 0.015 23.3 9.7 61 3-74 41-102 (332)
340 PRK03501 ppnK inorganic polyph 20.9 1.1E+02 0.0023 28.5 3.4 35 109-148 38-74 (264)
341 PF12724 Flavodoxin_5: Flavodo 20.7 2.2E+02 0.0048 23.1 5.1 78 54-148 4-84 (143)
342 cd07025 Peptidase_S66 LD-Carbo 20.6 3.8E+02 0.0082 24.8 7.1 38 107-144 220-262 (282)
343 TIGR00670 asp_carb_tr aspartat 20.5 2.8E+02 0.006 26.1 6.2 62 5-73 106-177 (301)
344 cd06314 PBP1_tmGBP Periplasmic 20.3 5.9E+02 0.013 22.4 8.2 73 59-145 11-85 (271)
345 cd06324 PBP1_ABC_sugar_binding 20.2 6.6E+02 0.014 22.8 9.3 71 60-145 14-88 (305)
346 PF02575 YbaB_DNA_bd: YbaB/Ebf 20.2 1.9E+02 0.0041 21.7 4.2 49 247-299 20-68 (93)
347 PRK01713 ornithine carbamoyltr 20.1 7E+02 0.015 23.8 8.9 60 5-72 112-181 (334)
348 TIGR01088 aroQ 3-dehydroquinat 20.0 3.2E+02 0.0069 22.9 5.7 30 54-85 21-50 (141)
349 PLN02527 aspartate carbamoyltr 20.0 6.2E+02 0.014 23.8 8.5 59 6-71 108-176 (306)
No 1
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=100.00 E-value=5.2e-65 Score=485.36 Aligned_cols=283 Identities=50% Similarity=0.837 Sum_probs=259.6
Q ss_pred cHHHHHHHhhcCCCCCCCeeeCCCCCcccccch-------------------------------hhhhcCCCceEEEEEc
Q psy17159 4 TESVRAKISMFCHVTPENVIFNPDVKPIYKVRM-------------------------------LRIDRLNKTVTIGLVG 52 (326)
Q Consensus 4 ~~~~~~ki~~~~~~~~~~v~~~~~~~~~y~~p~-------------------------------~~~~~~~~~~~I~iig 52 (326)
++++|+|||+||+|+.++||+++|+++||++|+ +++.++.+.++||+||
T Consensus 216 ~~~~~~KIAlfc~V~~~~Vi~~~Dv~siY~vPl~l~~qgl~~~i~~~l~l~~~~~dl~~W~~~v~~i~~~~~~v~IalVG 295 (533)
T COG0504 216 PEEERRKIALFCNVPEEAVISAPDVESIYEVPLLLEKQGLDDYILERLNLNAPEPDLSEWKDLVDKIKNPKKEVTIALVG 295 (533)
T ss_pred CHHHHHHHHHhcCCCHHHeEecccHHHHHHhHHHHHHcchHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCceEEEEEE
Confidence 468999999999999999999999999999997 2333445568999999
Q ss_pred ccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhc-CCCEEEECCCCCCCCCchHHHH
Q psy17159 53 KYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFC-KVDGIIVPGGFGKRGLEGKIAA 131 (326)
Q Consensus 53 dyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~-~~dglilpGG~~~~~~~~~~~~ 131 (326)
+|..+.|+|.|+.+||+++|...+.+|++.|++++.++.... +.+. .+|||++|||||.++.+|.+.+
T Consensus 296 KYv~l~DaY~Sv~EAL~hag~~~~~~v~i~wIdse~le~~~~-----------~~~~~~~dgIlVPGGFG~RG~eGkI~A 364 (533)
T COG0504 296 KYVELPDAYKSVIEALKHAGIALGVKVNIKWIDSEDLEEENA-----------AELEKLVDGILVPGGFGYRGVEGKIAA 364 (533)
T ss_pred CCcCchhHHHHHHHHHHhhhhhcCCceeeEEEccccccccch-----------hhhhhcCCEEEeCCCCCcCchHHHHHH
Confidence 999999999999999999999999999999999988775321 1222 2999999999999999999999
Q ss_pred HHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCC-CCCCcceeecceeEEEecC
Q psy17159 132 CKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNP-GNMGGTMRLGKHETHFKPE 210 (326)
Q Consensus 132 i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~-~~~~~~~~lg~~~~~~~~~ 210 (326)
+++|+++++|+||||+|||++..++.++++|+.++++.||++. +++|+|.-|+++.. ..+|||||+|.+++.+.+
T Consensus 365 i~yAREn~iP~lGIClGmQ~aviE~ARnv~Gl~~AnS~Efdp~---t~~pVv~l~~eq~~~~~lGGTmRLG~y~~~l~~- 440 (533)
T COG0504 365 IRYARENNIPFLGICLGMQLAVIEFARNVLGLEGANSTEFDPD---TKYPVVDLMPEQKDVVDLGGTMRLGAYPCRLKP- 440 (533)
T ss_pred HHHHHhcCCCEEEEchhHHHHHHHHHHHhcCCccCcccccCCC---CCCceEEeccccccCCcCCceeeccceeeecCC-
Confidence 9999999999999999999999999999999999999999997 89998888988754 458999999999999987
Q ss_pred CCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEcccCCCcCCCCCCChH
Q psy17159 211 HKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPEYLSRPLRPSPP 290 (326)
Q Consensus 211 ~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFHPE~~~~~~~~~~l 290 (326)
+|+++++|+.. .+.+||+|||+||+++++.++..|++++|+++||..+|++|+++||||+|+|||||+.++|.+|||+
T Consensus 441 -gT~a~~lY~~~-~v~ERHRHRYEvN~~y~~~le~~Gl~~sg~s~d~~lvEivE~~~hpfFv~~QfHPEf~SrP~~phPl 518 (533)
T COG0504 441 -GTLAAKLYGKD-EIYERHRHRYEVNNDYRDQLEKAGLVFSGTSPDGGLVEIVELPDHPFFVATQFHPEFKSRPLRPHPL 518 (533)
T ss_pred -CcHHHHHhCCC-eeeeeccchhhcCHHHHHHHHhCCeEEEEEcCCCCeEEEEEcCCCceEEEEcccccccCCCCCCCcc
Confidence 89999999984 8999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhH
Q psy17159 291 FLGLILAAAGKLD 303 (326)
Q Consensus 291 f~~Fl~~a~~~~~ 303 (326)
|.+|+++|.++++
T Consensus 519 f~~fv~Aa~~~~~ 531 (533)
T COG0504 519 FVGFVKAALEYKK 531 (533)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999998763
No 2
>KOG2387|consensus
Probab=100.00 E-value=5.6e-65 Score=476.71 Aligned_cols=309 Identities=54% Similarity=0.931 Sum_probs=292.0
Q ss_pred cHHHHHHHhhcCCCCCCCeeeCCCCCcccccch----------------------------------hhhhcCCCceEEE
Q psy17159 4 TESVRAKISMFCHVTPENVIFNPDVKPIYKVRM----------------------------------LRIDRLNKTVTIG 49 (326)
Q Consensus 4 ~~~~~~ki~~~~~~~~~~v~~~~~~~~~y~~p~----------------------------------~~~~~~~~~~~I~ 49 (326)
++++|+|||+||+|.++||++.+|++|||-+|+ .++++....++||
T Consensus 223 ~~~vk~Kis~FChV~~eqV~~~hDv~siyhvPllL~~q~~~e~l~~~L~L~~~~~~~~~l~~W~~~~~~~d~~~~~V~Ia 302 (585)
T KOG2387|consen 223 EMSVKEKISMFCHVGPEQVVGLHDVSSIYHVPLLLEEQGIVEYLNRRLGLSIISSERPMLDKWSNMAERYDDLQVPVRIA 302 (585)
T ss_pred CHHHHHHHhhhcccCHHHeeeeccCcchhcchHHHhhhhHHHHHHHHhCCCccccchhhHHHHHHHHHhhhcccCcEEEE
Confidence 468999999999999999999999999999997 2333335568999
Q ss_pred EEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCCCchHH
Q psy17159 50 LVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRGLEGKI 129 (326)
Q Consensus 50 iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~~~~~~ 129 (326)
+||+|..+.|+|.|+.+||++++..++.++++.|+++..|++....++|.+|+++|+.|..+|||++|||||.++.+|.+
T Consensus 303 lVGKYt~l~DsY~Sv~KAL~Ha~~~~~~kl~i~wi~s~dLE~~t~~e~~~~~~~aW~~l~~adGilvPGGFG~RGveG~i 382 (585)
T KOG2387|consen 303 LVGKYTKLSDSYLSVVKALEHAALAINRKLEIVWIDSSDLEPETEQEDPRKYHAAWQKLKSADGILVPGGFGDRGVEGKI 382 (585)
T ss_pred EEeccccchHHHHHHHHHHHHHHHHhcccceEEEEehhcccccccccChhHHHHHHHHhccCCeEEeCCcccccchhHHH
Confidence 99999999999999999999999999999999999999999988888999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcceeecceeEEEec
Q psy17159 130 AACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHETHFKP 209 (326)
Q Consensus 130 ~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~lg~~~~~~~~ 209 (326)
.++++|+++++|+||||||||+-..+|.+++||+.++++++|++. +++|+|..||++....+||+||+|.+...|.+
T Consensus 383 ~Aak~ARen~iP~LGiCLGmQ~AvIEfaRnvLg~~dAnStEF~p~---~~~~vVi~MPE~~~~~mGgtMRLG~R~t~f~~ 459 (585)
T KOG2387|consen 383 LAAKWARENKIPFLGICLGMQLAVIEFARNVLGLKDANSTEFDPE---TKNPVVIFMPEHNKTHMGGTMRLGSRRTVFQD 459 (585)
T ss_pred HHHHHHHhcCCCeEeeehhhhHHHHHHHHHhhCCCCCCccccCCC---CCCcEEEECcCCCcccccceeeecccceeeec
Confidence 999999999999999999999999999999999999999999998 79999999999999999999999999999998
Q ss_pred CCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEcccCCCcCCCCCCCh
Q psy17159 210 EHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPEYLSRPLRPSP 289 (326)
Q Consensus 210 ~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFHPE~~~~~~~~~~ 289 (326)
. +|.+.++||....+.+||+|||+|||+.+..++..|+.+++.+.+|..+|.+|.++||||+|+|||||+.++|.+|+|
T Consensus 460 ~-~s~~~kLYG~~~~V~ERHRHRyEVNP~~v~~le~~Gl~FvGkd~~g~rmeI~El~~HP~fVg~QfHPE~~srp~kpsp 538 (585)
T KOG2387|consen 460 K-DSKLRKLYGNVEFVDERHRHRYEVNPEMVKQLEQAGLSFVGKDVTGKRMEIIELESHPFFVGVQFHPEFKSRPDKPSP 538 (585)
T ss_pred C-chHHHHHhCCchhhhhhhhcceecCHHHHHHHHhcCcEEEeecCCCcEEEEEEcCCCCceeeeccCHHHhcCCCCCCc
Confidence 7 899999999877899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHhhcCCCcc
Q psy17159 290 PFLGLILAAAGKLDAYIEKECRQVTET 316 (326)
Q Consensus 290 lf~~Fl~~a~~~~~~~~~~~~~~~~~~ 316 (326)
+|...+.++.++....++..+...+++
T Consensus 539 ~flGlv~as~~~l~~~l~~~~~~~~~~ 565 (585)
T KOG2387|consen 539 LFLGLVAASCGRLDAYLQRGCRLSPSD 565 (585)
T ss_pred chhHhHHHHHhhHHHhhcccccccccc
Confidence 999999999999999988888776663
No 3
>PLN02327 CTP synthase
Probab=100.00 E-value=3.4e-64 Score=493.77 Aligned_cols=298 Identities=51% Similarity=0.848 Sum_probs=273.7
Q ss_pred cHHHHHHHhhcCCCCCCCeeeCCCCCcccccch---------------------------------hhhhcCCCceEEEE
Q psy17159 4 TESVRAKISMFCHVTPENVIFNPDVKPIYKVRM---------------------------------LRIDRLNKTVTIGL 50 (326)
Q Consensus 4 ~~~~~~ki~~~~~~~~~~v~~~~~~~~~y~~p~---------------------------------~~~~~~~~~~~I~i 50 (326)
++++|+|||+||+|+.++||+.+|+++||++|+ +++.+++++++||+
T Consensus 223 ~~~~~~Kia~fc~v~~~~Vi~~~d~~~iY~vPl~l~~q~l~~~i~~~l~l~~~~~~~~~~~W~~~~~~~~~~~~~v~Ial 302 (557)
T PLN02327 223 EENVKEKLSQFCHVPAENILNLHDVSNIWHVPLLLRDQKAHEAILKVLNLLSVAREPDLEEWTARAESCDNLTEPVRIAM 302 (557)
T ss_pred CHHHHHHHHHhcCCCHHHEEEcCCCchHhhhhHHHHHCCcHHHHHHHcCCCCCCCCCChHHHHHHHHHHhCCCCceEEEE
Confidence 468999999999999999999999999999998 22334466799999
Q ss_pred EcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCCCchHHH
Q psy17159 51 VGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRGLEGKIA 130 (326)
Q Consensus 51 igdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~~~~~~~ 130 (326)
||||..+.|+|.|+.+||++++..++.+|++.|++++.+++.....+|++|+.+++.|.++||||+|||||.+...+.+.
T Consensus 303 VGKY~~l~DAY~Si~eAL~hA~~~~~~~v~i~wI~se~l~~~~~~~~~~~y~~~~~~L~~~DGIvvpGGfG~~~~~G~i~ 382 (557)
T PLN02327 303 VGKYTGLSDSYLSVLKALLHASVACSRKLVIDWVAASDLEDETAKETPDAYAAAWKLLKGADGILVPGGFGDRGVEGKIL 382 (557)
T ss_pred EecccCCcHhHHHHHHHHHHHHHHcCCeeEEEEEchhhcCCcccccccchhhhhHHhhccCCEEEeCCCCCCcccccHHH
Confidence 99999999999999999999999999999999999999987666667889999999999999999999999988889999
Q ss_pred HHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcceeecceeEEEecC
Q psy17159 131 ACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHETHFKPE 210 (326)
Q Consensus 131 ~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~lg~~~~~~~~~ 210 (326)
+++++++.++|+||||+|||+|+.+++++++|+.++++.||++. +++|+|..|+++....+||+||+|.+.+.+..+
T Consensus 383 ai~~are~~iP~LGIClGmQl~viefaRnvlG~~dAnS~Efdp~---t~~pvI~~m~e~~~~~~GGtMRLG~~~~~~~~~ 459 (557)
T PLN02327 383 AAKYARENKVPYLGICLGMQIAVIEFARSVLGLKDANSTEFDPE---TPNPCVIFMPEGSKTHMGGTMRLGSRRTYFQTP 459 (557)
T ss_pred HHHHHHHcCCCEEEEcHHHHHHHHHHHHhhcCCcCCCccccCCC---CCCCEEEEehhcccccCCceEECCCcccccCCC
Confidence 99999999999999999999999999999999999999999987 788988889888777899999999999999755
Q ss_pred CCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEcccCCCcCCCCCCChH
Q psy17159 211 HKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPEYLSRPLRPSPP 290 (326)
Q Consensus 211 ~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFHPE~~~~~~~~~~l 290 (326)
+|++.++|+....++++|||||+||+++++.+++.+++++|+++||.++|++|++++||++|||||||+.+.+.++++|
T Consensus 460 -~S~l~~iYg~~~~VnerHrHRYeVN~q~v~~le~~gL~vsa~s~dg~~IEaiE~~~~pffvGVQfHPE~~s~p~~~~pL 538 (557)
T PLN02327 460 -DCKSAKLYGNVSFVDERHRHRYEVNPEMVPRLEKAGLSFVGKDETGRRMEIVELPSHPFFVGVQFHPEFKSRPGKPSPL 538 (557)
T ss_pred -CCHHHHHhCCccceeeeeccccccCHHHHHHHhhcCcEEEEEcCCCCEEEEEEeCCCCEEEEEEcCCCCCCCCCCchHH
Confidence 9999999997645899999999999999999878999999999998679999999999988999999999998888999
Q ss_pred HHHHHHHHHhhhHHH
Q psy17159 291 FLGLILAAAGKLDAY 305 (326)
Q Consensus 291 f~~Fl~~a~~~~~~~ 305 (326)
|.+|+++|.++++++
T Consensus 539 F~~Fv~Aa~~~~~~~ 553 (557)
T PLN02327 539 FLGLIAAASGQLDAV 553 (557)
T ss_pred HHHHHHHHHHhHHhh
Confidence 999999998876553
No 4
>PRK05380 pyrG CTP synthetase; Validated
Probab=100.00 E-value=4.7e-60 Score=463.98 Aligned_cols=283 Identities=49% Similarity=0.839 Sum_probs=254.1
Q ss_pred cHHHHHHHhhcCCCCCCCeeeCCCCCcccccch-------------------------------hhhhcCCCceEEEEEc
Q psy17159 4 TESVRAKISMFCHVTPENVIFNPDVKPIYKVRM-------------------------------LRIDRLNKTVTIGLVG 52 (326)
Q Consensus 4 ~~~~~~ki~~~~~~~~~~v~~~~~~~~~y~~p~-------------------------------~~~~~~~~~~~I~iig 52 (326)
++++|+|||+||+|+.++||+.+|+++||++|+ +++.++.++++||+||
T Consensus 216 ~~~~~~Kia~fc~v~~~~vi~~~d~~~iy~vPl~l~~q~~~~~i~~~l~l~~~~~~~~~w~~~~~~~~~~~~~v~IalVG 295 (533)
T PRK05380 216 PEEEKRKIALFCNVPEEAVISAPDVDSIYEVPLLLHEQGLDDIVLERLGLEAPEPDLSEWEELVERLKNPKGEVTIALVG 295 (533)
T ss_pred CHHHHHHHHhccCCCHHHEEEcCCCccHHhhhHHHHHCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHhCCCCceEEEEEe
Confidence 468999999999999999999999999999998 4555667789999999
Q ss_pred ccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCCCchHHHHH
Q psy17159 53 KYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRGLEGKIAAC 132 (326)
Q Consensus 53 dyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~~~~~~~~i 132 (326)
||..+.|+|.|+.+||+++|..++.+|.+.|++++.++... ..+.|+.+||||||||+|.+...+.+.++
T Consensus 296 KY~~l~DaY~Sv~eAL~hag~~~~~~v~i~wIdse~l~~~~----------~~~~L~~~DGIIlpGGfG~~~~~g~i~~i 365 (533)
T PRK05380 296 KYVELPDAYKSVIEALKHAGIANDVKVNIKWIDSEDLEEEN----------VAELLKGVDGILVPGGFGERGIEGKILAI 365 (533)
T ss_pred CccCCcHHHHHHHHHHHHHHHHcCCeeEEEEEChhhccCcc----------hhhHhhcCCEEEecCCCCccccccHHHHH
Confidence 99999999999999999999999999999999998776421 23478999999999999988778889999
Q ss_pred HHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCC-CCCCcceeecceeEEEecCC
Q psy17159 133 KWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNP-GNMGGTMRLGKHETHFKPEH 211 (326)
Q Consensus 133 ~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~-~~~~~~~~lg~~~~~~~~~~ 211 (326)
+++++.++|+||||+|||+|+.++|++++|+.++++.++++. +++|++..++++.. ..+|++||+|.+.+.+.+
T Consensus 366 ~~a~e~~iPiLGIClGmQll~va~Ggnv~g~qda~s~E~~~~---t~~pvI~~~~~q~~~~~~ggtmrlg~h~v~i~~-- 440 (533)
T PRK05380 366 RYARENNIPFLGICLGMQLAVIEFARNVLGLEDANSTEFDPD---TPHPVIDLMPEQKDVSDLGGTMRLGAYPCKLKP-- 440 (533)
T ss_pred HHHHHCCCcEEEEchHHHHHHHHhcccccCcccCcccccCCC---CCCCeEeeccccccccccCCcccccceeEEECC--
Confidence 999999999999999999999999999999999999898776 67887777766433 457899999999999976
Q ss_pred CchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEcccCCCcCCCCCCChHH
Q psy17159 212 KSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPEYLSRPLRPSPPF 291 (326)
Q Consensus 212 ~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFHPE~~~~~~~~~~lf 291 (326)
+|+++++||.. .+.+||+|+|+||+.+.+.++..|++++|+++||.++||+|++++||++|||||||+.+++.++++||
T Consensus 441 gS~l~~iyg~~-~i~ErhrHryeVNs~h~qal~~~GL~vsa~s~DgglVEaIEl~~hpfflGVQwHPE~~s~p~~~~pLF 519 (533)
T PRK05380 441 GTLAAEIYGKE-EIYERHRHRYEVNNKYREQLEKAGLVFSGTSPDGRLVEIVELPDHPWFVGVQFHPEFKSRPRRPHPLF 519 (533)
T ss_pred CChHHHHhCCC-ceeeecccceecCHHHHHHHhhcCeEEEEEcCCCCcEEEEEeCCCCEEEEEeCCCCCCCCCCchHHHH
Confidence 89999999975 78999999999999998888677999999998875599999999999899999999999888889999
Q ss_pred HHHHHHHHhhh
Q psy17159 292 LGLILAAAGKL 302 (326)
Q Consensus 292 ~~Fl~~a~~~~ 302 (326)
.+|+++|.+++
T Consensus 520 ~~FV~Aa~~~~ 530 (533)
T PRK05380 520 AGFVKAALENK 530 (533)
T ss_pred HHHHHHHHHHh
Confidence 99999997654
No 5
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=100.00 E-value=2.5e-58 Score=451.79 Aligned_cols=277 Identities=48% Similarity=0.813 Sum_probs=248.8
Q ss_pred cHHHHHHHhhcCCCCCCCeeeCCCCCcccccch-------------------------------hhhhcCCCceEEEEEc
Q psy17159 4 TESVRAKISMFCHVTPENVIFNPDVKPIYKVRM-------------------------------LRIDRLNKTVTIGLVG 52 (326)
Q Consensus 4 ~~~~~~ki~~~~~~~~~~v~~~~~~~~~y~~p~-------------------------------~~~~~~~~~~~I~iig 52 (326)
++++|+|||+||+|+.++||+.+|+++||++|+ +++.++.++++||+||
T Consensus 217 ~~~~~~Kia~f~~v~~~~vi~~~d~~~iY~vPl~l~~q~~~~~i~~~l~l~~~~~~~~~W~~~~~~~~~~~~~v~IalVG 296 (525)
T TIGR00337 217 DPSTKDKIALFCDVEEEAVINAHDVSSIYEVPLLLLKQGLDDYLCRRLNLNCDEADLSEWEELVEKFINPKHEVTIGIVG 296 (525)
T ss_pred CHHHHHHHHhccCCCHHHEEEcCCCccHhhhhHHHHHCChHHHHHHHhCCCCCCCcHHHHHHHHHHhhCCCCCcEEEEEe
Confidence 468999999999999999999999999999998 3344556679999999
Q ss_pred ccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCCCchHHHHH
Q psy17159 53 KYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRGLEGKIAAC 132 (326)
Q Consensus 53 dyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~~~~~~~~i 132 (326)
||..+.++|.|+.++|+++|+.++..|.+.|+++++++... .+.|+++||||||||||.+...+.+.++
T Consensus 297 KY~~~~daY~SI~eAL~~ag~~~~~~V~~~~i~se~i~~~~-----------~~~L~~~dGIiLpGG~G~~~~~g~i~ai 365 (525)
T TIGR00337 297 KYVELKDSYLSVIEALKHAGAKLDTKVNIKWIDSEDLEEEG-----------AEFLKGVDGILVPGGFGERGVEGKILAI 365 (525)
T ss_pred CCcCCHHHHHHHHHHHHhCccccCCEEEEEEecHHHhhhhh-----------hhhhcCCCEEEeCCCCCChhhcChHHHH
Confidence 99999999999999999999999999999999987654321 1257889999999999998888888999
Q ss_pred HHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCC-CCCCCcceeecceeEEEecCC
Q psy17159 133 KWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHN-PGNMGGTMRLGKHETHFKPEH 211 (326)
Q Consensus 133 ~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~-~~~~~~~~~lg~~~~~~~~~~ 211 (326)
+++++.++|+||||+|||+|+.++|++++|+.++++.+|++. +++|++..++++. ...+||+||+|.+.+.+.+
T Consensus 366 ~~a~e~~iP~LGIClG~Qll~i~~grnv~gl~~A~s~Ef~~~---~~~pVi~l~~~~~~~~~~GGTmRLG~h~v~i~~-- 440 (525)
T TIGR00337 366 KYARENNIPFLGICLGMQLAVIEFARNVLGLKGANSTEFDPE---TKYPVVDLLPEQKDISDLGGTMRLGLYPCILKP-- 440 (525)
T ss_pred HHHHHcCCCEEEEcHHHHHHHHHHHHHhcCCCCCCccccCCC---CCCCeeeccCcccccccCCceeeccceEEEECC--
Confidence 999999999999999999999999999999999999999987 7899777777654 3678999999999999876
Q ss_pred CchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEcccCCCcCCCCCCChHH
Q psy17159 212 KSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPEYLSRPLRPSPPF 291 (326)
Q Consensus 212 ~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFHPE~~~~~~~~~~lf 291 (326)
+|+++++||.. .+.++|+|+|+||+.+.+.++..|++++|+++||.+|||+|++++||++|||||||+.+.+.++++||
T Consensus 441 gS~L~~iyG~~-~i~erhrHry~VNs~h~q~l~~~GL~vsa~s~Dgg~VEaIE~~~hpfflGVQwHPE~~s~p~~~~~LF 519 (525)
T TIGR00337 441 GTLAFKLYGKE-EVYERHRHRYEVNNEYREQLENKGLIVSGTSPDGRLVEIIELPDHPFFVACQFHPEFTSRPNRPHPLF 519 (525)
T ss_pred CChHHHHhCCC-ceeecccceEEECHHHHHhhhhCCeEEEEEECCCCEEEEEEECCCCeEEEEecCCCCCCCCCchhHHH
Confidence 89999999986 67899999999999998887678999999999965599999999999889999999999988889999
Q ss_pred HHHHHH
Q psy17159 292 LGLILA 297 (326)
Q Consensus 292 ~~Fl~~ 297 (326)
.+|+++
T Consensus 520 ~~FV~A 525 (525)
T TIGR00337 520 LGFVKA 525 (525)
T ss_pred HHHHhC
Confidence 999974
No 6
>PRK06186 hypothetical protein; Validated
Probab=100.00 E-value=1.7e-52 Score=374.00 Aligned_cols=227 Identities=31% Similarity=0.478 Sum_probs=205.1
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCCC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRGL 125 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~~ 125 (326)
++||+||||..+.|+|.|+.+||++++...+.+|++.||+++++++. ..|+++|||++|||+|.++.
T Consensus 2 v~IalVGKY~~~~daY~Sv~eal~ha~~~~~~~~~i~wi~s~~l~~~-------------~~l~~~dgilvpgGfg~rg~ 68 (229)
T PRK06186 2 LRIALVGDYNPDVTAHQAIPLALDLAAAVLGLPVDYEWLPTPEITDP-------------EDLAGFDGIWCVPGSPYRND 68 (229)
T ss_pred cEEEEEECCcCCcHHHHHHHHHHHHHHHhcCCeeEEEEEchhhcCCh-------------hhHhhCCeeEeCCCCCcccH
Confidence 68999999999999999999999999999999999999999877642 25889999999999999999
Q ss_pred chHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcceeecceeE
Q psy17159 126 EGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHET 205 (326)
Q Consensus 126 ~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~lg~~~~ 205 (326)
+|.+.+|++++++++|+||||+|||++.++++++++++.++++.+|++. +++|+|..|+... . -..+.+
T Consensus 69 ~Gki~ai~~Are~~iP~LGIClGmQ~avIe~arnv~g~~dA~s~E~~~~---~~~pvi~~~~~~~-~-------~~~h~v 137 (229)
T PRK06186 69 DGALTAIRFARENGIPFLGTCGGFQHALLEYARNVLGWADAAHAETDPE---GDRPVIAPLSCSL-V-------EKTGDI 137 (229)
T ss_pred hHHHHHHHHHHHcCCCeEeechhhHHHHHHHHhhhcCCcCCCcCCCCCC---CCCCEEEECcccc-c-------cCceEE
Confidence 9999999999999999999999999999999999999999999999987 7889887776221 1 122566
Q ss_pred EEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEcccCCCcCCCC
Q psy17159 206 HFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPEYLSRPL 285 (326)
Q Consensus 206 ~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFHPE~~~~~~ 285 (326)
.+.+ +|++.++||.. .+.+||+|+|+||+.+.+.+++.||+++|+++||. |||+|.+++||++|||||||+.+++.
T Consensus 138 ~l~~--~S~l~~iyg~~-~i~erhrHryeVNs~h~q~i~~~GL~vsa~s~DG~-iEaiE~~~hpf~lGVQwHPE~~s~~~ 213 (229)
T PRK06186 138 RLRP--GSLIARAYGTL-EIEEGYHCRYGVNPEFVAALESGDLRVTGWDEDGD-VRAVELPGHPFFVATLFQPERAALAG 213 (229)
T ss_pred EECC--CCHHHHHhCCC-eeeeeccccEEECHHHHHHHhcCCeEEEEEcCCCC-EEEEEeCCCCcEEEEeCCCCccCCCC
Confidence 6654 89999999875 68899999999999998888899999999999997 99999999999999999999999888
Q ss_pred CCChHHHHHHHHHHh
Q psy17159 286 RPSPPFLGLILAAAG 300 (326)
Q Consensus 286 ~~~~lf~~Fl~~a~~ 300 (326)
.+++||.+|+++|.+
T Consensus 214 ~~~~LF~~Fv~aa~~ 228 (229)
T PRK06186 214 RPPPLVRAFLRAARA 228 (229)
T ss_pred CCCHHHHHHHHHHhc
Confidence 889999999999864
No 7
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=100.00 E-value=7.8e-43 Score=316.21 Aligned_cols=233 Identities=52% Similarity=0.899 Sum_probs=200.0
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCCC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRGL 125 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~~ 125 (326)
++||+||||.++.++|.|+.++|.+++.+.+..+.+.|+++..+.... ..+.++.+||||+|||++.+..
T Consensus 1 ~~i~lvg~~~~~~day~s~~~~L~~a~~~~~~~v~~~~i~~~~~~~~~----------~~~~l~~~dgivl~GG~~~~~~ 70 (235)
T cd01746 1 VRIALVGKYVELPDAYLSVLEALKHAGIALGVKLEIKWIDSEDLEEEN----------AEEALKGADGILVPGGFGIRGV 70 (235)
T ss_pred CEEEEEECCcCCHHHHHHHHHHHHHHHHHcCCeeEEEEeChhhcCccc----------hhhhhccCCEEEECCCCCCcch
Confidence 479999999999999999999999999998889999999976544311 1236789999999999998877
Q ss_pred chHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCC-CCCCCCcceeeccee
Q psy17159 126 EGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEH-NPGNMGGTMRLGKHE 204 (326)
Q Consensus 126 ~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~-~~~~~~~~~~lg~~~ 204 (326)
.+.+.+++++++.++|+||||+|||+|+.++|++++++..++..++.+. .++|++..+..+ .....+++||+|.+.
T Consensus 71 ~~~~~~i~~~~~~~~PvlGIClG~Q~l~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~rl~~h~ 147 (235)
T cd01746 71 EGKILAIKYARENNIPFLGICLGMQLAVIEFARNVLGLPDANSTEFDPD---TPHPVVDLMPEQKGVKDLGGTMRLGAYP 147 (235)
T ss_pred hhHHHHHHHHHHCCceEEEEEhHHHHHHHHHHHHhcCCccCCccccCCC---CCCCEEEECcccccccccCcccccCceE
Confidence 7888899999999999999999999999999999999999888877654 577866555443 334567899999999
Q ss_pred EEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcC-CCCeEEEEEECCCCeEEEEcccCCCcCC
Q psy17159 205 THFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDE-KEVRMEIAELRDHPYYVAVQFHPEYLSR 283 (326)
Q Consensus 205 ~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~-dg~~veaie~~~~~~~~GvQFHPE~~~~ 283 (326)
+.+.+ +|.+.+++|.. .+.++++|+|+||++++..+.+.+++++|++. ||. ||++|.+++||++|||||||+...
T Consensus 148 v~i~~--~s~l~~~~g~~-~~~~n~~H~~~v~~~~~~~~~~~~l~v~a~~~ddg~-ieaie~~~~pf~lgvQ~HPE~~~~ 223 (235)
T cd01746 148 VILKP--GTLAHKYYGKD-EVEERHRHRYEVNPEYVDELEEAGLRFSGTDPDGGL-VEIVELPDHPFFVGTQFHPEFKSR 223 (235)
T ss_pred EEECC--CChHHHHhCCC-EEEEecCcccccCHHHHHHHhhCCeEEEEEeCCCCe-EEEEEcCCCCcEEEEECCCCCcCC
Confidence 99876 89999999985 56788889999999888765578999999999 676 999999999997899999999988
Q ss_pred CCCCChHHHHHH
Q psy17159 284 PLRPSPPFLGLI 295 (326)
Q Consensus 284 ~~~~~~lf~~Fl 295 (326)
+...++||.+|+
T Consensus 224 ~~~~~~lF~~fv 235 (235)
T cd01746 224 PLKPHPLFVGFV 235 (235)
T ss_pred CCCccHHHHHhC
Confidence 777789999985
No 8
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=8.8e-33 Score=237.95 Aligned_cols=188 Identities=23% Similarity=0.281 Sum_probs=142.2
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCCC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRGL 125 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~~ 125 (326)
++|.+| |||+|++++|.+.-.+++.+|.+++.+..++.. . .-.++|+||||+|||.|..
T Consensus 2 ~~IL~I-------DNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~-------------~-~~~~pd~iviSPGPG~P~d 60 (191)
T COG0512 2 MMILLI-------DNYDSFTYNLVQYLRELGAEVTVVRNDDISLEL-------------I-EALKPDAIVISPGPGTPKD 60 (191)
T ss_pred ceEEEE-------ECccchHHHHHHHHHHcCCceEEEECCccCHHH-------------H-hhcCCCEEEEcCCCCChHH
Confidence 589999 899999999999998888777777776222110 0 1236899999999999976
Q ss_pred ch-HHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcceeeccee
Q psy17159 126 EG-KIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHE 204 (326)
Q Consensus 126 ~~-~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~lg~~~ 204 (326)
.+ ..++|+++ ..++|+||||||||.|+++||+++-.... | .| |...
T Consensus 61 ~G~~~~~i~~~-~~~~PiLGVCLGHQai~~~fGg~V~~a~~---------------~------~H-----------GK~s 107 (191)
T COG0512 61 AGISLELIRRF-AGRIPILGVCLGHQAIAEAFGGKVVRAKE---------------P------MH-----------GKTS 107 (191)
T ss_pred cchHHHHHHHh-cCCCCEEEECccHHHHHHHhCCEEEecCC---------------C------cC-----------Ceee
Confidence 66 56777877 67899999999999999999999843221 1 11 3333
Q ss_pred EEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEcccCCCcCCC
Q psy17159 205 THFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPEYLSRP 284 (326)
Q Consensus 205 ~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFHPE~~~~~ 284 (326)
.+.... ..++.++. +. +..+|| |++.++++.+ ++.++++|++.|+..|||+++++.|. +|||||||+..|+
T Consensus 108 ~i~h~g-~~iF~glp-~~-f~v~RY-HSLvv~~~~l----P~~l~vtA~~~d~~~IMai~h~~~pi-~gvQFHPESilT~ 178 (191)
T COG0512 108 IITHDG-SGLFAGLP-NP-FTVTRY-HSLVVDPETL----PEELEVTAESEDGGVIMAVRHKKLPI-YGVQFHPESILTE 178 (191)
T ss_pred eeecCC-cccccCCC-CC-CEEEee-EEEEecCCCC----CCceEEEEEeCCCCEEEEEeeCCCCE-EEEecCCcccccc
Confidence 333332 24455554 32 677888 7888776543 57999999998764599999999997 9999999999998
Q ss_pred CCCChHHHHHHHH
Q psy17159 285 LRPSPPFLGLILA 297 (326)
Q Consensus 285 ~~~~~lf~~Fl~~ 297 (326)
.+ +++++||++.
T Consensus 179 ~G-~~il~Nfl~~ 190 (191)
T COG0512 179 YG-HRILENFLRL 190 (191)
T ss_pred ch-HHHHHHHHhh
Confidence 75 6999999975
No 9
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.97 E-value=9e-31 Score=243.01 Aligned_cols=225 Identities=20% Similarity=0.254 Sum_probs=175.2
Q ss_pred CcHHHHHHHhhcCCCCCCCeeeCCCCCcccccchhhhhc-CCCceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEE
Q psy17159 3 DTESVRAKISMFCHVTPENVIFNPDVKPIYKVRMLRIDR-LNKTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQL 81 (326)
Q Consensus 3 ~~~~~~~ki~~~~~~~~~~v~~~~~~~~~y~~p~~~~~~-~~~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~ 81 (326)
|.+....+...++++...|++...+++.+|.++. ++. .....+|+++ |||. ..++++.|...|+.+
T Consensus 138 ~~~~~~~~~~~~~~~~~~dlv~~VSt~~~~~~~~--~~~~~~~~~~Vv~i-D~Gv----K~nIlr~L~~rg~~v------ 204 (368)
T COG0505 138 DPAKLLERARAFPGILGTDLVKEVSTKEPYTWPG--LNGGGEPGKHVVVI-DFGV----KRNILRELVKRGCRV------ 204 (368)
T ss_pred ChHHHHHHHhhcCCCCcccccceeecCCceeccc--cccCCCCCcEEEEE-EcCc----cHHHHHHHHHCCCeE------
Confidence 3456677888899999999999999999999886 221 1234789999 9975 889999999999843
Q ss_pred EEeecccccCCCCCCCchhhcchhhhh-cCCCEEEECCCCCCCC-CchHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcc
Q psy17159 82 KYFDSELLSMDPKTGNMAEYHKTWSDF-CKVDGIIVPGGFGKRG-LEGKIAACKWARENNKPFLGICLGLQAAVIEYGRS 159 (326)
Q Consensus 82 ~~i~~~~l~~~~~~~~~~~~~~~~~~l-~~~dglilpGG~~~~~-~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~ 159 (326)
..++..+ + +.+.+ .++|||+||.|||+|. ....+..|++.++..+|+||||||||+|+.++|++
T Consensus 205 tVVP~~t--------~------~eeIl~~~pDGiflSNGPGDP~~~~~~i~~ik~l~~~~iPifGICLGHQllalA~Ga~ 270 (368)
T COG0505 205 TVVPADT--------S------AEEILALNPDGIFLSNGPGDPAPLDYAIETIKELLGTKIPIFGICLGHQLLALALGAK 270 (368)
T ss_pred EEEcCCC--------C------HHHHHhhCCCEEEEeCCCCChhHHHHHHHHHHHHhccCCCeEEEcHHHHHHHHhcCCc
Confidence 2333211 0 12234 4899999999999985 35678889999988889999999999999999999
Q ss_pred cccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcceeecceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcc
Q psy17159 160 VLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKY 239 (326)
Q Consensus 160 ~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~ 239 (326)
..++.-+ ++| .++| |.++. . |+ ...+.|+|+|+|+++.
T Consensus 271 T~KmkFG------HrG--~NhP-V~dl~----------------------t---------gr--v~ITSQNHGyaVd~~s 308 (368)
T COG0505 271 TYKMKFG------HRG--ANHP-VKDLD----------------------T---------GR--VYITSQNHGYAVDEDS 308 (368)
T ss_pred eeecccC------CCC--CCcC-ccccc----------------------C---------Ce--EEEEecCCceecChhh
Confidence 9888644 444 6677 33221 0 22 3456789999999874
Q ss_pred cccccCCCeEEEEEcC-CCCeEEEEEECCCCeEEEEcccCCCcCCCCCCChHHHHHHHHHHhhh
Q psy17159 240 VPDYEKHGFLFTGVDE-KEVRMEIAELRDHPYYVAVQFHPEYLSRPLRPSPPFLGLILAAAGKL 302 (326)
Q Consensus 240 v~~l~~~gl~v~a~~~-dg~~veaie~~~~~~~~GvQFHPE~~~~~~~~~~lf~~Fl~~a~~~~ 302 (326)
+. ..+ +++.++. ||. +|++++++.|. ++||||||.++.|.+.+.||..|++.+.+++
T Consensus 309 ~~---~~~-~vth~nlnDgT-vEGi~h~~~P~-fSVQ~HPEAsPGPhDt~ylFd~Fi~~~~~~~ 366 (368)
T COG0505 309 LV---ETL-KVTHVNLNDGT-VEGIRHKDLPA-FSVQYHPEASPGPHDTRYLFDEFIELMEAAK 366 (368)
T ss_pred cC---CCc-eeEEEeCCCCC-ccceecCCCce-EEEccCCCCCCCCcccHHHHHHHHHHHHHhh
Confidence 33 223 8888885 676 99999999997 9999999999999998899999999887654
No 10
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=99.97 E-value=2e-30 Score=224.52 Aligned_cols=191 Identities=24% Similarity=0.256 Sum_probs=137.6
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECC-CCCCC-
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPG-GFGKR- 123 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpG-G~~~~- 123 (326)
++|+|| |||+ ||..|+.+||+++|++. .++++| +.+..+|+||||| |.-..
T Consensus 2 ~~i~II-Dyg~--GNL~Sv~~Aler~G~~~-----------------~vs~d~-------~~i~~AD~liLPGVGaf~~a 54 (204)
T COG0118 2 MMVAII-DYGS--GNLRSVKKALERLGAEV-----------------VVSRDP-------EEILKADKLILPGVGAFGAA 54 (204)
T ss_pred CEEEEE-EcCc--chHHHHHHHHHHcCCee-----------------EEecCH-------HHHhhCCEEEecCCCCHHHH
Confidence 689999 9999 99999999999999742 223344 3788999999999 63211
Q ss_pred ----CCchHHHHHHHHHHcCCCEEEEehhHHHHHH---HhCc-ccccccCCcccccCCCCCCccCCeeeccCCCCCCCCC
Q psy17159 124 ----GLEGKIAACKWARENNKPFLGICLGLQAAVI---EYGR-SVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMG 195 (326)
Q Consensus 124 ----~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~---~~g~-~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~ 195 (326)
...++++.|++.++.++|+||||+|||+|.. |.+. +.||+.++.+.+|.... .+ +.|
T Consensus 55 m~~L~~~gl~~~i~~~~~~~kP~LGIClGMQlLfe~SeE~~~~~GLg~i~G~V~r~~~~~----~k-vPH---------- 119 (204)
T COG0118 55 MANLRERGLIEAIKEAVESGKPFLGICLGMQLLFERSEEGGGVKGLGLIPGKVVRFPAED----LK-VPH---------- 119 (204)
T ss_pred HHHHHhcchHHHHHHHHhcCCCEEEEeHhHHhhhhcccccCCCCCcceecceEEEcCCCC----CC-CCc----------
Confidence 1236788899888889999999999999995 4444 79999999999986541 22 223
Q ss_pred cceeecceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCC-CeEEEEEECCCCeEEEE
Q psy17159 196 GTMRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKE-VRMEIAELRDHPYYVAV 274 (326)
Q Consensus 196 ~~~~lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg-~~veaie~~~~~~~~Gv 274 (326)
.||..+.+.+. +.++..+... ...++.|+|.+.+ .+.-.++++++.| .+..+++. + + ++|+
T Consensus 120 ----MGWN~l~~~~~-~~l~~gi~~~---~~~YFVHSY~~~~-------~~~~~v~~~~~YG~~f~AaV~k-~-N-~~g~ 181 (204)
T COG0118 120 ----MGWNQVEFVRG-HPLFKGIPDG---AYFYFVHSYYVPP-------GNPETVVATTDYGEPFPAAVAK-D-N-VFGT 181 (204)
T ss_pred ----cccceeeccCC-ChhhcCCCCC---CEEEEEEEEeecC-------CCCceEEEeccCCCeeEEEEEe-C-C-EEEE
Confidence 37887777732 3444444321 3567889998764 1233456767766 44555544 3 3 4999
Q ss_pred cccCCCcCCCCCCChHHHHHHHHH
Q psy17159 275 QFHPEYLSRPLRPSPPFLGLILAA 298 (326)
Q Consensus 275 QFHPE~~~~~~~~~~lf~~Fl~~a 298 (326)
|||||++... +.++++||++.+
T Consensus 182 QFHPEKSg~~--Gl~lL~NFl~~~ 203 (204)
T COG0118 182 QFHPEKSGKA--GLKLLKNFLEWI 203 (204)
T ss_pred ecCcccchHH--HHHHHHHHHhhc
Confidence 9999999865 358999999753
No 11
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.97 E-value=2.2e-29 Score=240.58 Aligned_cols=218 Identities=19% Similarity=0.256 Sum_probs=161.0
Q ss_pred CcHHHHHHHhhcCCCCCCCeeeCCCCCcccccchhhhhcCCCceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEE
Q psy17159 3 DTESVRAKISMFCHVTPENVIFNPDVKPIYKVRMLRIDRLNKTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLK 82 (326)
Q Consensus 3 ~~~~~~~ki~~~~~~~~~~v~~~~~~~~~y~~p~~~~~~~~~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~ 82 (326)
|.++..+++..+..+...|.+...+++.+|.+|.+. .....+|++| |||. ..+++++|+++|+. +.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~v~~vs~~~~~~~~~~~---~~~~~~I~vi-D~G~----k~nivr~L~~~G~~----v~-- 203 (360)
T PRK12564 138 DAEELLEKARAFPGLLGLDLVKEVSTKEPYPWPGPG---GELKYKVVAI-DFGV----KRNILRELAERGCR----VT-- 203 (360)
T ss_pred CHHHHHHHHHcCCCCcccCCcceeCCCCCEECCCCC---CCCCCEEEEE-eCCc----HHHHHHHHHHCCCE----EE--
Confidence 456778888888889899999999999999887511 1224699999 9975 67899999998863 22
Q ss_pred EeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCCCC-chHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcc
Q psy17159 83 YFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKRGL-EGKIAACKWARENNKPFLGICLGLQAAVIEYGRS 159 (326)
Q Consensus 83 ~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~~~-~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~ 159 (326)
.++... + .+.+ .++|||||+|||+++.. ...+++++++.+.++|+||||+|||+|+.++|++
T Consensus 204 vvp~~~--------~-------~~~i~~~~~DGIvLSgGPgdp~~~~~~~~~i~~~~~~~~PilGIClG~QlLa~a~Gg~ 268 (360)
T PRK12564 204 VVPATT--------T-------AEEILALNPDGVFLSNGPGDPAALDYAIEMIRELLEKKIPIFGICLGHQLLALALGAK 268 (360)
T ss_pred EEeCCC--------C-------HHHHHhcCCCEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEECHHHHHHHHHhCCc
Confidence 333211 0 0122 26999999999988643 4567888999888999999999999999999999
Q ss_pred cccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcceeecceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcc
Q psy17159 160 VLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKY 239 (326)
Q Consensus 160 ~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~ 239 (326)
+..+..++ +| .++| +..... +. .....++|+|.|+++.
T Consensus 269 v~kl~~gh------~G--~~~p-----------------------v~~~~~---------~~--~~its~~H~~~V~~~~ 306 (360)
T PRK12564 269 TYKMKFGH------RG--ANHP-----------------------VKDLET---------GK--VEITSQNHGFAVDEDS 306 (360)
T ss_pred EeccCCCc------cC--Ccee-----------------------eEECCC---------Cc--EEEEecCcccEEcccc
Confidence 86543221 11 1222 111110 11 2335667899997654
Q ss_pred cccccCCCeEEEEEc-CCCCeEEEEEECCCCeEEEEcccCCCcCCCCCCChHHHHHHHH
Q psy17159 240 VPDYEKHGFLFTGVD-EKEVRMEIAELRDHPYYVAVQFHPEYLSRPLRPSPPFLGLILA 297 (326)
Q Consensus 240 v~~l~~~gl~v~a~~-~dg~~veaie~~~~~~~~GvQFHPE~~~~~~~~~~lf~~Fl~~ 297 (326)
+ +++++++|++ +|+. +|+++++++|+ ||||||||+..++.+...+|++|++.
T Consensus 307 l----p~~l~v~a~~~~Dg~-iegi~~~~~pi-~gVQfHPE~~~gp~d~~~lF~~F~~~ 359 (360)
T PRK12564 307 L----PANLEVTHVNLNDGT-VEGLRHKDLPA-FSVQYHPEASPGPHDSAYLFDEFVEL 359 (360)
T ss_pred c----CCceEEEEEeCCCCc-EEEEEECCCCE-EEEEeCCcCCCCCCCHHHHHHHHHHh
Confidence 3 5689999998 4777 99999999997 99999999999887777899999975
No 12
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=99.97 E-value=2.2e-29 Score=240.18 Aligned_cols=220 Identities=22% Similarity=0.289 Sum_probs=158.8
Q ss_pred CcHHHHHHHhhcCCCCCCCeeeCCCCCcccccchhhhhcCCCceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEE
Q psy17159 3 DTESVRAKISMFCHVTPENVIFNPDVKPIYKVRMLRIDRLNKTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLK 82 (326)
Q Consensus 3 ~~~~~~~ki~~~~~~~~~~v~~~~~~~~~y~~p~~~~~~~~~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~ 82 (326)
+.++.++|+..+.++...|.+...+++..|.++... .....+|+++ |||. ..++++.|+.+|+.+ .
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~v~~vs~~~~~~~~~~~---~~~~~~i~vi-D~G~----k~ni~~~L~~~G~~v----~-- 199 (358)
T TIGR01368 134 NDEELVQKASVSPDIDGINLVAEVSTKEPYTWGQKR---GGKKKRVVVI-DFGV----KQNILRRLVKRGCEV----T-- 199 (358)
T ss_pred ChHHHHHHHHhCCCCccCCccceeccCCCEEeCCCC---CCCccEEEEE-eCCc----HHHHHHHHHHCCCEE----E--
Confidence 344567888888888888999999999999886300 1122589999 9975 678999999988732 2
Q ss_pred EeecccccCCCCCCCchhhcchhhhh-c-CCCEEEECCCCCCCCC-chHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcc
Q psy17159 83 YFDSELLSMDPKTGNMAEYHKTWSDF-C-KVDGIIVPGGFGKRGL-EGKIAACKWARENNKPFLGICLGLQAAVIEYGRS 159 (326)
Q Consensus 83 ~i~~~~l~~~~~~~~~~~~~~~~~~l-~-~~dglilpGG~~~~~~-~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~ 159 (326)
.++... + .+.+ + .+|||||+|||+++.. ...++.++++++ ++|+||||+|||+|+.++|++
T Consensus 200 vvp~~~--------~-------~~~i~~~~pDGIiLSgGPgdp~~~~~~i~~i~~~~~-~~PILGIClG~QlLa~a~Gg~ 263 (358)
T TIGR01368 200 VVPYDT--------D-------AEEIKKYNPDGIFLSNGPGDPAAVEPAIETIRKLLE-KIPIFGICLGHQLLALAFGAK 263 (358)
T ss_pred EEcCCC--------C-------HHHHHhhCCCEEEECCCCCCHHHHHHHHHHHHHHHc-CCCEEEECHHHHHHHHHhCCc
Confidence 222110 0 1122 2 4699999999998743 456778888887 999999999999999999999
Q ss_pred cccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcceeecceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcc
Q psy17159 160 VLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKY 239 (326)
Q Consensus 160 ~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~ 239 (326)
+..+..+ ++| .++|+ ..... ++ ...+.++|+|.|+++.
T Consensus 264 v~kl~~g------h~G--~nhpV-----------------------~~~~~---------~~--v~itsqnH~~aV~~~~ 301 (358)
T TIGR01368 264 TYKMKFG------HRG--GNHPV-----------------------KDLIT---------GR--VEITSQNHGYAVDPDS 301 (358)
T ss_pred eeccCcC------cCC--Cceee-----------------------EECCC---------Cc--EEEeecCCCcEEcccc
Confidence 8664432 222 23331 11110 11 2234567899998655
Q ss_pred cccccCCCeEEEEEc-CCCCeEEEEEECCCCeEEEEcccCCCcCCCCCCChHHHHHHHHHH
Q psy17159 240 VPDYEKHGFLFTGVD-EKEVRMEIAELRDHPYYVAVQFHPEYLSRPLRPSPPFLGLILAAA 299 (326)
Q Consensus 240 v~~l~~~gl~v~a~~-~dg~~veaie~~~~~~~~GvQFHPE~~~~~~~~~~lf~~Fl~~a~ 299 (326)
+. .++++++|++ .||. ||+++++++|+ +|||||||+...+.+...||++|++++.
T Consensus 302 l~---~~~l~vta~~~nDg~-Vegi~h~~~pi-~gVQfHPE~~~gp~d~~~lF~~F~~~~~ 357 (358)
T TIGR01368 302 LP---AGDLEVTHVNLNDGT-VEGIRHKDLPV-FSVQYHPEASPGPHDTEYLFDEFIDLIK 357 (358)
T ss_pred cC---CCceEEEEEECCCCc-EEEEEECCCCE-EEEEECCCCCCCCCChHHHHHHHHHHhh
Confidence 42 4689999998 4777 99999999997 9999999999887766689999998763
No 13
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=99.96 E-value=1.5e-29 Score=222.27 Aligned_cols=182 Identities=22% Similarity=0.259 Sum_probs=127.6
Q ss_pred EEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCCCC
Q psy17159 48 IGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKRGL 125 (326)
Q Consensus 48 I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~~~ 125 (326)
|.+| |||+|++++|.+.-.+.+.++.+++.+..++ +.+ .++|+|||+||||.+..
T Consensus 2 il~i-------dn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~----------------~~~~~~~~d~iils~GPg~p~~ 58 (187)
T PRK08007 2 ILLI-------DNYDSFTWNLYQYFCELGADVLVKRNDALTL----------------ADIDALKPQKIVISPGPCTPDE 58 (187)
T ss_pred EEEE-------ECCCccHHHHHHHHHHCCCcEEEEeCCCCCH----------------HHHHhcCCCEEEEcCCCCChHH
Confidence 7888 7899999999888877766666655542111 122 36899999999998754
Q ss_pred ch-HHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcceeeccee
Q psy17159 126 EG-KIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHE 204 (326)
Q Consensus 126 ~~-~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~lg~~~ 204 (326)
.+ ...+++. .+.++|+||||+|||+|+.++|+++.....+. .| +...
T Consensus 59 ~~~~~~~~~~-~~~~~PiLGIClG~Q~la~a~Gg~v~~~~~~~------~g-------------------------~~~~ 106 (187)
T PRK08007 59 AGISLDVIRH-YAGRLPILGVCLGHQAMAQAFGGKVVRAAKVM------HG-------------------------KTSP 106 (187)
T ss_pred CCccHHHHHH-hcCCCCEEEECHHHHHHHHHcCCEEEeCCCcc------cC-------------------------CceE
Confidence 33 4455555 46789999999999999999999985432211 00 0111
Q ss_pred EEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEcccCCCcCCC
Q psy17159 205 THFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPEYLSRP 284 (326)
Q Consensus 205 ~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFHPE~~~~~ 284 (326)
+.. .. .+++..+. . .....++|++.|.+. .+ +++++++|++++|. +||+++++.++ +|||||||+..+.
T Consensus 107 v~~-~~-~~l~~~~~-~--~~~v~~~H~~~v~~~---~l-p~~~~v~a~~~~~~-i~a~~~~~~~i-~GvQfHPE~~~t~ 175 (187)
T PRK08007 107 ITH-NG-EGVFRGLA-N--PLTVTRYHSLVVEPD---SL-PACFEVTAWSETRE-IMGIRHRQWDL-EGVQFHPESILSE 175 (187)
T ss_pred EEE-CC-CCcccCCC-C--CcEEEEcchhEEccC---CC-CCCeEEEEEeCCCc-EEEEEeCCCCE-EEEEeCCcccCCc
Confidence 111 11 34443332 2 233455677877532 33 68999999999999 99999999886 9999999998876
Q ss_pred CCCChHHHHHHH
Q psy17159 285 LRPSPPFLGLIL 296 (326)
Q Consensus 285 ~~~~~lf~~Fl~ 296 (326)
. +..+|+||++
T Consensus 176 ~-G~~il~nFl~ 186 (187)
T PRK08007 176 Q-GHQLLANFLH 186 (187)
T ss_pred c-hHHHHHHHhh
Confidence 5 4699999985
No 14
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=99.96 E-value=9.6e-30 Score=225.72 Aligned_cols=168 Identities=23% Similarity=0.374 Sum_probs=125.6
Q ss_pred hhhhhcCCCEEEECCCCCCC------------------CCchHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccC
Q psy17159 104 TWSDFCKVDGIIVPGGFGKR------------------GLEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKD 165 (326)
Q Consensus 104 ~~~~l~~~dglilpGG~~~~------------------~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~ 165 (326)
+...++..|||||+||.... .....+.+|+.|+++++||||||+|||+|++++||++..-..
T Consensus 54 ~~~~l~~iDgliltGg~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~iPILgICRG~QllNVa~GGtL~q~i~ 133 (243)
T COG2071 54 ARQYLDLIDGLILTGGSNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIPILGICRGLQLLNVALGGTLYQDIS 133 (243)
T ss_pred HHHHHhhccEEEecCCCcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcCCCEEEEccchHHHHHHhcCeeehhhh
Confidence 34577899999999993210 012367889999999999999999999999999998743221
Q ss_pred CcccccCCCCCCccCCeeeccCCCCCCCCCcceeecceeEEEecCCCchHHhhhCCC-cceeeecceeeeeCCccccccc
Q psy17159 166 ADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHETHFKPEHKSKLKLLYGNK-DKIEERHRHRYEVNKKYVPDYE 244 (326)
Q Consensus 166 ~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~lg~~~~~~~~~~~s~l~~~~~~~-~~v~~~h~h~~~vn~~~v~~l~ 244 (326)
..... +. |.+. .......|.+.+.+ +|.|++++|.. ..+++.||+. +++|
T Consensus 134 ~~~~~------------~~----H~~~---~~~~~~~H~V~i~~--~s~La~i~g~~~~~VNS~HhQa-------Ik~L- 184 (243)
T COG2071 134 EQPGH------------ID----HRQP---NPVHIESHEVHIEP--GSKLAKILGESEFMVNSFHHQA-------IKKL- 184 (243)
T ss_pred ccccc------------cc----ccCC---CCcccceeEEEecC--CccHHHhcCccceeecchHHHH-------HHHh-
Confidence 11100 11 1111 01122355666654 89999999964 4689999874 7788
Q ss_pred CCCeEEEEEcCCCCeEEEEEECCCCeEEEEcccCCCcCCCCCC-ChHHHHHHHHHHhh
Q psy17159 245 KHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPEYLSRPLRP-SPPFLGLILAAAGK 301 (326)
Q Consensus 245 ~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFHPE~~~~~~~~-~~lf~~Fl~~a~~~ 301 (326)
+++|+++|+++||. ||||+++++.|++|||||||+....... ..||+.|+.++..+
T Consensus 185 a~~L~V~A~a~DG~-VEAie~~~~~fvlGVQWHPE~~~~~~~~~~~LFe~F~~~~~~~ 241 (243)
T COG2071 185 APGLVVEARAPDGT-VEAVEVKNDAFVLGVQWHPEYLVDTNPLSLALFEAFVNACKKH 241 (243)
T ss_pred CCCcEEEEECCCCc-EEEEEecCCceEEEEecChhhhccCChHHHHHHHHHHHHHHhh
Confidence 89999999999999 9999999988999999999999876533 36999999988654
No 15
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.96 E-value=2e-28 Score=233.31 Aligned_cols=212 Identities=21% Similarity=0.312 Sum_probs=151.5
Q ss_pred HHHHHHHhhcCCCCCCCeeeCCCCCcccccchhhhhcCCCceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEe
Q psy17159 5 ESVRAKISMFCHVTPENVIFNPDVKPIYKVRMLRIDRLNKTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYF 84 (326)
Q Consensus 5 ~~~~~ki~~~~~~~~~~v~~~~~~~~~y~~p~~~~~~~~~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i 84 (326)
++..+++..+ +...|.+....++.+|.++. ...+|+++ ||| ...++.++|..+|+. +.++..
T Consensus 136 ~~~~~~~~~~--~~~~~~v~~vs~~~~~~~~~-------~~~~V~vi-D~G----~k~ni~~~L~~~G~~----v~vvp~ 197 (354)
T PRK12838 136 AHAFDQIKAL--VLPKNVVAQVSTKEPYTYGN-------GGKHVALI-DFG----YKKSILRSLSKRGCK----VTVLPY 197 (354)
T ss_pred HHHHHHHHhh--hccCCcccEEEcCCCEEeCC-------CCCEEEEE-CCC----HHHHHHHHHHHCCCe----EEEEEC
Confidence 3455565555 77789999999999988875 23689999 996 478999999988763 333332
Q ss_pred ecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCCCC-chHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccc
Q psy17159 85 DSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKRGL-EGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVL 161 (326)
Q Consensus 85 ~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~~~-~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l 161 (326)
+. ++ +.+ ..+|||||+|||+++.. ...+++++++++. +|+||||+|||+|+.++|+++.
T Consensus 198 ~~----------~~-------~~i~~~~~DGIiLsgGPgdp~~~~~~~~~i~~~~~~-~PvlGIClG~QlLa~a~Gg~v~ 259 (354)
T PRK12838 198 DT----------SL-------EEIKNLNPDGIVLSNGPGDPKELQPYLPEIKKLISS-YPILGICLGHQLIALALGADTE 259 (354)
T ss_pred CC----------CH-------HHHhhcCCCEEEEcCCCCChHHhHHHHHHHHHHhcC-CCEEEECHHHHHHHHHhCCEEe
Confidence 21 00 122 37999999999997643 3456778887766 9999999999999999999986
Q ss_pred cccCCcccccCCCCCCccCCeeeccCCCCCCCCCcceeecceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccc
Q psy17159 162 GLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVP 241 (326)
Q Consensus 162 ~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~ 241 (326)
.+..++ +| .++| +.... . +. ...+.++|+|.|+++.+.
T Consensus 260 kl~~gh------~G--~~hp-----------------------V~~~~--~-------~~--~~~ts~~H~~aV~~~sl~ 297 (354)
T PRK12838 260 KLPFGH------RG--ANHP-----------------------VIDLT--T-------GR--VWMTSQNHGYVVDEDSLD 297 (354)
T ss_pred cCCCCc------cC--CceE-----------------------EEECC--C-------Ce--EEEeccchheEecccccC
Confidence 543221 11 1222 22211 1 11 123446688998765433
Q ss_pred cccCCCeEEEEEc-CCCCeEEEEEECCCCeEEEEcccCCCcCCCCCCChHHHHHHHHHH
Q psy17159 242 DYEKHGFLFTGVD-EKEVRMEIAELRDHPYYVAVQFHPEYLSRPLRPSPPFLGLILAAA 299 (326)
Q Consensus 242 ~l~~~gl~v~a~~-~dg~~veaie~~~~~~~~GvQFHPE~~~~~~~~~~lf~~Fl~~a~ 299 (326)
..++.+++++ .|+. +||++++++|+ ||||||||+..++.+...||++|++++.
T Consensus 298 ---~~~l~v~a~~~~Dg~-Veai~~~~~pi-~gVQfHPE~~~gp~d~~~lF~~F~~~~~ 351 (354)
T PRK12838 298 ---GTPLSVRFFNVNDGS-IEGLRHKKKPV-LSVQFHPEAHPGPHDAEYIFDEFLEMME 351 (354)
T ss_pred ---CCCcEEEEEECCCCe-EEEEEECCCCE-EEEEeCCCCCCCCccHHHHHHHHHHHHH
Confidence 3468999986 5777 99999999996 9999999999887666689999998874
No 16
>PLN02335 anthranilate synthase
Probab=99.96 E-value=1.7e-28 Score=221.05 Aligned_cols=201 Identities=18% Similarity=0.203 Sum_probs=128.0
Q ss_pred CCceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCC
Q psy17159 43 NKTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGK 122 (326)
Q Consensus 43 ~~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~ 122 (326)
++..+|+|| |+ ++|+..+|.+.-.+.+..+.++..+...+++ -...++|+|||+|||+.
T Consensus 16 ~~~~~ilvi-D~------~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~--------------~~~~~~d~iVisgGPg~ 74 (222)
T PLN02335 16 KQNGPIIVI-DN------YDSFTYNLCQYMGELGCHFEVYRNDELTVEE--------------LKRKNPRGVLISPGPGT 74 (222)
T ss_pred CccCcEEEE-EC------CCCHHHHHHHHHHHCCCcEEEEECCCCCHHH--------------HHhcCCCEEEEcCCCCC
Confidence 445799999 54 4455555555544444455555443211110 01236899999999998
Q ss_pred CCCch-HHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcceeec
Q psy17159 123 RGLEG-KIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLG 201 (326)
Q Consensus 123 ~~~~~-~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~lg 201 (326)
+...+ ..+.++. ...++|+||||+|||+|+.++|+++.....+. ..| +
T Consensus 75 p~d~~~~~~~~~~-~~~~~PiLGIClG~QlLa~alGg~v~~~~~~~-----~~G-------------------------~ 123 (222)
T PLN02335 75 PQDSGISLQTVLE-LGPLVPLFGVCMGLQCIGEAFGGKIVRSPFGV-----MHG-------------------------K 123 (222)
T ss_pred hhhccchHHHHHH-hCCCCCEEEecHHHHHHHHHhCCEEEeCCCcc-----ccC-------------------------c
Confidence 75433 2333433 35579999999999999999999884321110 000 0
Q ss_pred ceeEEEecC-CCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEcccCCC
Q psy17159 202 KHETHFKPE-HKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPEY 280 (326)
Q Consensus 202 ~~~~~~~~~-~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFHPE~ 280 (326)
+..+..... .++++..+. . .....++|++.|+++.++ ..+++++|++++|. +++++++++|++||||||||+
T Consensus 124 ~~~v~~~~~~~~~Lf~~l~-~--~~~v~~~H~~~v~~~~lp---~~~~~v~a~~~~~~-v~ai~~~~~~~i~GvQfHPE~ 196 (222)
T PLN02335 124 SSPVHYDEKGEEGLFSGLP-N--PFTAGRYHSLVIEKDTFP---SDELEVTAWTEDGL-IMAARHRKYKHIQGVQFHPES 196 (222)
T ss_pred eeeeEECCCCCChhhhCCC-C--CCEEEechhheEecccCC---CCceEEEEEcCCCC-EEEEEecCCCCEEEEEeCCCC
Confidence 111111110 024444443 2 234567788888754433 33499999999998 999999998866999999999
Q ss_pred cCCCCCCChHHHHHHHHHHhhhH
Q psy17159 281 LSRPLRPSPPFLGLILAAAGKLD 303 (326)
Q Consensus 281 ~~~~~~~~~lf~~Fl~~a~~~~~ 303 (326)
..++. +..+|++|++.+.+++.
T Consensus 197 ~~~~~-g~~i~~nF~~~~~~~~~ 218 (222)
T PLN02335 197 IITTE-GKTIVRNFIKIIEKKES 218 (222)
T ss_pred CCChh-HHHHHHHHHHHHHhhcc
Confidence 98764 46899999998876553
No 17
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=99.96 E-value=5.6e-28 Score=212.43 Aligned_cols=183 Identities=20% Similarity=0.240 Sum_probs=131.5
Q ss_pred EEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcC--CCEEEECCCCCCCCC
Q psy17159 48 IGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCK--VDGIIVPGGFGKRGL 125 (326)
Q Consensus 48 I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~--~dglilpGG~~~~~~ 125 (326)
|+|| |||+ ++..++.++|++.|.. +.+.+.+. ++ +.+.. +||||||||++....
T Consensus 1 i~ii-D~g~--~~~~~l~~~l~~~g~~----~~~~~~~~----------~~-------~~~~~~~~~glii~Gg~~~~~~ 56 (188)
T TIGR00888 1 ILVL-DFGS--QYTQLIARRLRELGVY----SELVPNTT----------PL-------EEIREKNPKGIILSGGPSSVYA 56 (188)
T ss_pred CEEE-ECCc--hHHHHHHHHHHHcCCE----EEEEeCCC----------CH-------HHHhhcCCCEEEECCCCCCcCc
Confidence 6899 9998 8888999999988863 33333331 01 13333 569999999887654
Q ss_pred chHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcceeecceeE
Q psy17159 126 EGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHET 205 (326)
Q Consensus 126 ~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~lg~~~~ 205 (326)
.....+++.+++.++|+||||+|||+|+.++|+++...... ..|+..+
T Consensus 57 ~~~~~~i~~~~~~~~PilGIC~G~Qll~~~lgg~v~~~~~~--------------------------------~~g~~~v 104 (188)
T TIGR00888 57 ENAPRADEKIFELGVPVLGICYGMQLMAKQLGGEVGRAEKR--------------------------------EYGKAEL 104 (188)
T ss_pred CCchHHHHHHHhCCCCEEEECHHHHHHHHhcCceEecCCCc--------------------------------cceeEEE
Confidence 45567888888899999999999999999999887432110 1245555
Q ss_pred EEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEcccCCCcCCCC
Q psy17159 206 HFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPEYLSRPL 285 (326)
Q Consensus 206 ~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFHPE~~~~~~ 285 (326)
.+.. .+.+....+. .....+.|+|.+. .+ +++++++|+++++. ++++++++.++ +|+|||||++.++.
T Consensus 105 ~~~~--~~~l~~~~~~--~~~~~~~H~~~v~-----~l-~~~~~vla~~~~~~-v~a~~~~~~~~-~g~QfHPE~~~~~~ 172 (188)
T TIGR00888 105 EILD--EDDLFRGLPD--ESTVWMSHGDKVK-----EL-PEGFKVLATSDNCP-VAAMAHEEKPI-YGVQFHPEVTHTEY 172 (188)
T ss_pred EEec--CCHhhcCCCC--CcEEEeEccceee-----cC-CCCCEEEEECCCCC-eEEEEECCCCE-EEEeeCCccCCChh
Confidence 5554 3333333333 2344556777653 44 78999999999888 99999998886 99999999988754
Q ss_pred CCChHHHHHHHHHH
Q psy17159 286 RPSPPFLGLILAAA 299 (326)
Q Consensus 286 ~~~~lf~~Fl~~a~ 299 (326)
+..+|++|+.+++
T Consensus 173 -g~~i~~~f~~~~~ 185 (188)
T TIGR00888 173 -GNELLENFVYDVC 185 (188)
T ss_pred -hHHHHHHHHHHhh
Confidence 4689999998543
No 18
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=99.96 E-value=1.5e-27 Score=228.81 Aligned_cols=224 Identities=21% Similarity=0.292 Sum_probs=158.9
Q ss_pred CcHHHHHHHhhcCCCCCCCeeeCCCCCcccccch-hhh---------hcCCCceEEEEEcccCCCchhHHHHHHHHHHHh
Q psy17159 3 DTESVRAKISMFCHVTPENVIFNPDVKPIYKVRM-LRI---------DRLNKTVTIGLVGKYTKFEDCYASLTRALEHAS 72 (326)
Q Consensus 3 ~~~~~~~ki~~~~~~~~~~v~~~~~~~~~y~~p~-~~~---------~~~~~~~~I~iigdyg~~~~~~~Si~~aL~~~g 72 (326)
|.++..+++..+..+...+.+...+++.+|.++. +.+ ..+..+.+|++| |+|. ..++++.|+.+|
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~vi-D~g~----k~ni~~~L~~~G 214 (382)
T CHL00197 140 NLSYLRAKIKESPHMPSSDLIPRVTTSSYYEWDEKSHPSFYLADNKRPHSSYQLKIIVI-DFGV----KYNILRRLKSFG 214 (382)
T ss_pred ChHHHHHHHHcCCCCccCCccceecCCCCEEecCCCccccccccccccccCCCCEEEEE-ECCc----HHHHHHHHHHCC
Confidence 3456678888888888899999999999998852 111 112234799999 9974 567999999887
Q ss_pred hhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCCCC-chHHHHHHHHHHcCCCEEEEehhH
Q psy17159 73 YHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKRGL-EGKIAACKWARENNKPFLGICLGL 149 (326)
Q Consensus 73 ~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~~~-~~~~~~i~~~~~~~~PvLGIClG~ 149 (326)
+. +.+ ++... + .+.+ .++|||||+||||++.. ...++.++++++.++|+||||+||
T Consensus 215 ~~----v~v--vp~~~--------~-------~~~i~~~~~dgIilSgGPg~p~~~~~~i~~i~~~~~~~~PilGIClGh 273 (382)
T CHL00197 215 CS----ITV--VPATS--------P-------YQDILSYQPDGILLSNGPGDPSAIHYGIKTVKKLLKYNIPIFGICMGH 273 (382)
T ss_pred Ce----EEE--EcCCC--------C-------HHHHhccCCCEEEEcCCCCChhHHHHHHHHHHHHHhCCCCEEEEcHHH
Confidence 63 232 32111 0 0122 27899999999998753 345567787777789999999999
Q ss_pred HHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcceeecceeEEEecCCCchHHhhhCCCcceeeec
Q psy17159 150 QAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHETHFKPEHKSKLKLLYGNKDKIEERH 229 (326)
Q Consensus 150 QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h 229 (326)
|+|+.++|+++..+..++ .| .++| +. . ... ...+.+
T Consensus 274 QlLa~a~Gg~v~k~~~Gh------~g--~n~p-----------------------v~--~----------~~~-v~itsq 309 (382)
T CHL00197 274 QILSLALEAKTFKLKFGH------RG--LNHP-----------------------SG--L----------NQQ-VEITSQ 309 (382)
T ss_pred HHHHHHhCCEEeccCCCC------CC--CCEe-----------------------cC--C----------CCc-eEEeec
Confidence 999999999885543221 11 1112 00 0 011 223445
Q ss_pred ceeeeeCCcccccccCCCeEEEEEc-CCCCeEEEEEECCCCeEEEEcccCCCcCCCCCCChHHHHHHHHHHhh
Q psy17159 230 RHRYEVNKKYVPDYEKHGFLFTGVD-EKEVRMEIAELRDHPYYVAVQFHPEYLSRPLRPSPPFLGLILAAAGK 301 (326)
Q Consensus 230 ~h~~~vn~~~v~~l~~~gl~v~a~~-~dg~~veaie~~~~~~~~GvQFHPE~~~~~~~~~~lf~~Fl~~a~~~ 301 (326)
+|+|.++++.+.. .++.+++++ .|+. +|+++++++|+ ||||||||+..++.+...+|++|++.+.+.
T Consensus 310 ~H~~~v~~~sv~~---~~~~vt~~~~nDgt-vegi~h~~~pi-~gVQFHPE~~~gp~d~~~lf~~Fv~~~~~~ 377 (382)
T CHL00197 310 NHGFAVNLESLAK---NKFYITHFNLNDGT-VAGISHSPKPY-FSVQYHPEASPGPHDADYLFEYFIEIIKHS 377 (382)
T ss_pred chheEeeccccCC---CCcEEEEEECCCCC-EEEEEECCCCc-EEEeeCCCCCCCCCCHHHHHHHHHHHHHhh
Confidence 6899998766542 378899886 5777 99999999997 999999999988876667999999988553
No 19
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=99.96 E-value=2.7e-28 Score=215.58 Aligned_cols=187 Identities=21% Similarity=0.255 Sum_probs=127.3
Q ss_pred EEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCCCch
Q psy17159 48 IGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRGLEG 127 (326)
Q Consensus 48 I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~~~~ 127 (326)
|.|| ||++|++++|.+.-.+.+.++.++..+...+++ . ...++|+|||+|||+.+...+
T Consensus 2 il~i-------dn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~-------------~-~~~~~d~iIlsgGP~~p~~~~ 60 (195)
T PRK07649 2 ILMI-------DNYDSFTFNLVQFLGELGQELVVKRNDEVTISD-------------I-ENMKPDFLMISPGPCSPNEAG 60 (195)
T ss_pred EEEE-------eCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHH-------------H-hhCCCCEEEECCCCCChHhCC
Confidence 7888 788888888888877766666666544211110 0 113689999999999875433
Q ss_pred -HHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcceeecceeEE
Q psy17159 128 -KIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHETH 206 (326)
Q Consensus 128 -~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~lg~~~~~ 206 (326)
....++. .+.++|+||||+|||+|+.++|+++...... . | |....+
T Consensus 61 ~~~~~i~~-~~~~~PvLGIClG~Qlla~~lGg~V~~~~~~------~---------------~-----------G~~~~i 107 (195)
T PRK07649 61 ISMEVIRY-FAGKIPIFGVCLGHQSIAQVFGGEVVRAERL------M---------------H-----------GKTSLM 107 (195)
T ss_pred CchHHHHH-hcCCCCEEEEcHHHHHHHHHcCCEEeeCCCc------c---------------c-----------CCeEEE
Confidence 3445554 3578999999999999999999998432211 0 0 111111
Q ss_pred EecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEcccCCCcCCCCC
Q psy17159 207 FKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPEYLSRPLR 286 (326)
Q Consensus 207 ~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFHPE~~~~~~~ 286 (326)
.... .+++..+. . .....++|++.+... .+ +++++++|+++++. ++|++++++++ ||+|||||+..++.
T Consensus 108 ~~~~-~~lf~~~~-~--~~~v~~~H~~~v~~~---~l-p~~~~~~a~s~~~~-v~a~~~~~~~i-~gvQFHPE~~~t~~- 176 (195)
T PRK07649 108 HHDG-KTIFSDIP-N--PFTATRYHSLIVKKE---TL-PDCLEVTSWTEEGE-IMAIRHKTLPI-EGVQFHPESIMTSH- 176 (195)
T ss_pred EECC-ChhhcCCC-C--CCEEEEechheEecc---cC-CCCeEEEEEcCCCc-EEEEEECCCCE-EEEEECCCCCCCcc-
Confidence 1121 33444443 2 234566677776422 33 67999999999998 99999999996 99999999988764
Q ss_pred CChHHHHHHHHHH
Q psy17159 287 PSPPFLGLILAAA 299 (326)
Q Consensus 287 ~~~lf~~Fl~~a~ 299 (326)
+..+|++|++...
T Consensus 177 g~~il~nfl~~~~ 189 (195)
T PRK07649 177 GKELLQNFIRKYS 189 (195)
T ss_pred HHHHHHHHHHHhH
Confidence 4589999998653
No 20
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=99.96 E-value=7.1e-28 Score=211.89 Aligned_cols=183 Identities=22% Similarity=0.285 Sum_probs=127.2
Q ss_pred EEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCCCC
Q psy17159 48 IGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKRGL 125 (326)
Q Consensus 48 I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~~~ 125 (326)
|.|| |||+|+..+|.+.-...+..+.+...+...++ .+ .++|||||+||||++..
T Consensus 2 il~i-------d~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~----------------~~~~~~~d~iilsgGpg~p~~ 58 (188)
T TIGR00566 2 VLMI-------DNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQ----------------EIEALLPLLIVISPGPCTPNE 58 (188)
T ss_pred EEEE-------ECCcCHHHHHHHHHHHcCCceEEEECCCCCHH----------------HHHhcCCCEEEEcCCCCChhh
Confidence 7888 78889888888887776666665554422111 22 25899999999998753
Q ss_pred c-hHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcceeeccee
Q psy17159 126 E-GKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHE 204 (326)
Q Consensus 126 ~-~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~lg~~~ 204 (326)
. ...++++++ +.++|+||||+|||+|+.++|+++...... .| | ++..
T Consensus 59 ~~~~~~~i~~~-~~~~PvLGIC~G~Qll~~~~GG~v~~~~~~---------------------~~-----g-----~~~~ 106 (188)
T TIGR00566 59 AGISLEAIRHF-AGKLPILGVCLGHQAMGQAFGGDVVRANTV---------------------MH-----G-----KTSE 106 (188)
T ss_pred cchhHHHHHHh-ccCCCEEEECHHHHHHHHHcCCEEeeCCCc---------------------cc-----c-----ceEE
Confidence 2 245677777 678999999999999999999998432110 01 0 1222
Q ss_pred EEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEcccCCCcCCC
Q psy17159 205 THFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPEYLSRP 284 (326)
Q Consensus 205 ~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFHPE~~~~~ 284 (326)
+.... .+++..+.+. ....++|++.|++. .+ +++++++|++.++..++|++++++|+ ||||||||+..++
T Consensus 107 v~~~~--~~~~~~l~~~---~~v~~~H~~~v~~~---~l-~~~~~v~a~s~~~~~v~a~~~~~~~i-~gvQfHPE~~~t~ 176 (188)
T TIGR00566 107 IEHNG--AGIFRGLFNP---LTATRYHSLVVEPE---TL-PTCFPVTAWEEENIEIMAIRHRDLPL-EGVQFHPESILSE 176 (188)
T ss_pred EEECC--CccccCCCCC---cEEEEcccceEecc---cC-CCceEEEEEcCCCCEEEEEEeCCCCE-EEEEeCCCccCCc
Confidence 22222 4455545432 33455677877543 33 67899999998752399999999997 9999999998885
Q ss_pred CCCChHHHHHHH
Q psy17159 285 LRPSPPFLGLIL 296 (326)
Q Consensus 285 ~~~~~lf~~Fl~ 296 (326)
. +..+|+||+.
T Consensus 177 ~-G~~il~nfl~ 187 (188)
T TIGR00566 177 Q-GHQLLANFLH 187 (188)
T ss_pred c-cHHHHHHHHh
Confidence 4 4689999985
No 21
>CHL00101 trpG anthranilate synthase component 2
Probab=99.95 E-value=4.8e-28 Score=213.31 Aligned_cols=185 Identities=19% Similarity=0.234 Sum_probs=122.2
Q ss_pred EEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCCCC
Q psy17159 48 IGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKRGL 125 (326)
Q Consensus 48 I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~~~ 125 (326)
|.|| | |++|+..+|.+.-...+..+.+...+...+ +.+ ..+|||||+|||+.+..
T Consensus 2 ilii-d------~~dsft~~l~~~l~~~g~~~~v~~~~~~~~----------------~~~~~~~~dgiiisgGpg~~~~ 58 (190)
T CHL00101 2 ILII-D------NYDSFTYNLVQSLGELNSDVLVCRNDEIDL----------------SKIKNLNIRHIIISPGPGHPRD 58 (190)
T ss_pred EEEE-E------CCCchHHHHHHHHHhcCCCEEEEECCCCCH----------------HHHhhCCCCEEEECCCCCChHH
Confidence 7888 4 455666666665555444444433331111 122 47999999999998754
Q ss_pred chHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcceeecceeE
Q psy17159 126 EGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHET 205 (326)
Q Consensus 126 ~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~lg~~~~ 205 (326)
......+.++.+.++|+||||+|||+|+.++|+++.....+. | |....
T Consensus 59 ~~~~~~i~~~~~~~~PiLGIClG~Qlla~~~Gg~V~~~~~~~---------------------~-----------g~~~~ 106 (190)
T CHL00101 59 SGISLDVISSYAPYIPILGVCLGHQSIGYLFGGKIIKAPKPM---------------------H-----------GKTSK 106 (190)
T ss_pred CcchHHHHHHhcCCCcEEEEchhHHHHHHHhCCEEEECCCcc---------------------c-----------Cceee
Confidence 343334444567899999999999999999999984432110 1 11111
Q ss_pred EEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEcccCCCcCCCC
Q psy17159 206 HFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPEYLSRPL 285 (326)
Q Consensus 206 ~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFHPE~~~~~~ 285 (326)
+.... +.++... .. .....++|+|.|++. .+ +++++++|+++++. ++++++++++|+||||||||+..+..
T Consensus 107 ~~~~~-~~l~~~~-~~--~~~v~~~H~~~v~~~---~l-p~~~~vla~s~~~~-v~a~~~~~~~~i~gvQfHPE~~~~~~ 177 (190)
T CHL00101 107 IYHNH-DDLFQGL-PN--PFTATRYHSLIIDPL---NL-PSPLEITAWTEDGL-IMACRHKKYKMLRGIQFHPESLLTTH 177 (190)
T ss_pred EeeCC-cHhhccC-CC--ceEEEcchhheeecc---cC-CCceEEEEEcCCCc-EEEEEeCCCCCEEEEEeCCccCCChh
Confidence 22221 2333333 22 245567788887532 33 67999999999998 99999999995599999999987664
Q ss_pred CCChHHHHHHHH
Q psy17159 286 RPSPPFLGLILA 297 (326)
Q Consensus 286 ~~~~lf~~Fl~~ 297 (326)
...+|++|++.
T Consensus 178 -g~~l~~nf~~~ 188 (190)
T CHL00101 178 -GQQILRNFLSL 188 (190)
T ss_pred -HHHHHHHHHhh
Confidence 35899999874
No 22
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=99.95 E-value=7.1e-28 Score=212.39 Aligned_cols=183 Identities=21% Similarity=0.275 Sum_probs=124.0
Q ss_pred EEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCCCC
Q psy17159 48 IGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKRGL 125 (326)
Q Consensus 48 I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~~~ 125 (326)
|.+| ||++|++++|.+.-...+.++.+++.+...+ +.+ .++|+|||+|||+.+..
T Consensus 2 il~i-------d~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~----------------~~~~~~~~~~iilsgGP~~~~~ 58 (191)
T PRK06774 2 LLLI-------DNYDSFTYNLYQYFCELGTEVMVKRNDELQL----------------TDIEQLAPSHLVISPGPCTPNE 58 (191)
T ss_pred EEEE-------ECCCchHHHHHHHHHHCCCcEEEEeCCCCCH----------------HHHHhcCCCeEEEcCCCCChHh
Confidence 7888 7889999988888877776666665542111 123 26899999999998743
Q ss_pred ch-HHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcceeeccee
Q psy17159 126 EG-KIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHE 204 (326)
Q Consensus 126 ~~-~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~lg~~~ 204 (326)
.+ ...+++. ++.++|+||||+|||+|+.++|+++..... ...|+..
T Consensus 59 ~~~~~~~i~~-~~~~~PiLGIC~G~Qlla~~~GG~v~~~~~--------------------------------~~~G~~~ 105 (191)
T PRK06774 59 AGISLAVIRH-FADKLPILGVCLGHQALGQAFGARVVRARQ--------------------------------VMHGKTS 105 (191)
T ss_pred CCCchHHHHH-hcCCCCEEEECHHHHHHHHHhCCEEEeCCc--------------------------------ceecceE
Confidence 33 3455554 467999999999999999999999843211 0123333
Q ss_pred EEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCC-C--eEEEEEECCCCeEEEEcccCCCc
Q psy17159 205 THFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKE-V--RMEIAELRDHPYYVAVQFHPEYL 281 (326)
Q Consensus 205 ~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg-~--~veaie~~~~~~~~GvQFHPE~~ 281 (326)
...... ++++..+ .. .....++|++.+.+. .+ ++++.++|+++++ . .++++++++.++ +|||||||+.
T Consensus 106 ~~~~~~-~~lf~~l-~~--~~~v~~~Hs~~v~~~---~l-p~~~~vlA~s~~d~~~~~i~~~~~~~~~i-~GvQfHPE~~ 176 (191)
T PRK06774 106 AICHSG-QGVFRGL-NQ--PLTVTRYHSLVIAAD---SL-PGCFELTAWSERGGEMDEIMGIRHRTLPL-EGVQFHPESI 176 (191)
T ss_pred EEEecC-chhhcCC-CC--CcEEEEeCcceeecc---CC-CCCeEEEEEeCCCCCcceEEEEEeCCCCE-EEEEECCCcC
Confidence 333332 3344333 22 234455667766432 33 6789999998743 2 366778888786 9999999998
Q ss_pred CCCCCCChHHHHHHH
Q psy17159 282 SRPLRPSPPFLGLIL 296 (326)
Q Consensus 282 ~~~~~~~~lf~~Fl~ 296 (326)
+++.+ ..+|++|++
T Consensus 177 ~~~~G-~~i~~nf~~ 190 (191)
T PRK06774 177 LSEQG-HQLLDNFLK 190 (191)
T ss_pred CCccH-HHHHHHHhh
Confidence 77654 689999985
No 23
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=99.95 E-value=3.7e-27 Score=207.68 Aligned_cols=186 Identities=17% Similarity=0.226 Sum_probs=124.7
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCCC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRGL 125 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~~ 125 (326)
+||.|| ||++|+..++.++-.+.+..+.++..+..+ .+.++.+|+|||+||++.+..
T Consensus 2 ~~ilii-------d~~dsf~~~i~~~l~~~g~~~~v~~~~~~~----------------~~~l~~~d~iIi~gGp~~~~~ 58 (190)
T PRK06895 2 TKLLII-------NNHDSFTFNLVDLIRKLGVPMQVVNVEDLD----------------LDEVENFSHILISPGPDVPRA 58 (190)
T ss_pred cEEEEE-------eCCCchHHHHHHHHHHcCCcEEEEECCccC----------------hhHhccCCEEEECCCCCChHH
Confidence 689999 455555555555554444455555443211 125678999999999986532
Q ss_pred -chHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcceeeccee
Q psy17159 126 -EGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHE 204 (326)
Q Consensus 126 -~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~lg~~~ 204 (326)
..+.++|+. .+.++|+||||+|||+|+.++|+++...... . | + ++..
T Consensus 59 ~~~~~~~i~~-~~~~~PiLGIClG~Qlla~~~Gg~V~~~~~~------~---------------~-----g-----~~~~ 106 (190)
T PRK06895 59 YPQLFAMLER-YHQHKSILGVCLGHQTLCEFFGGELYNLNNV------R---------------H-----G-----QQRP 106 (190)
T ss_pred hhHHHHHHHH-hcCCCCEEEEcHHHHHHHHHhCCeEeecCCC------c---------------c-----C-----ceEE
Confidence 234556665 5679999999999999999999998432110 0 1 0 1122
Q ss_pred EEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEcccCCCcCCC
Q psy17159 205 THFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPEYLSRP 284 (326)
Q Consensus 205 ~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFHPE~~~~~ 284 (326)
+.... ++.+.+.+.. ....+++|+|.+.+. .+ +.++.++|.+.++. +++++++++|+ ||+|||||+.+++
T Consensus 107 v~~~~--~~~l~~~~~~--~~~v~~~Hs~~v~~~---~l-p~~l~~~a~~~~~~-i~a~~~~~~pi-~GvQFHPE~~~~~ 176 (190)
T PRK06895 107 LKVRS--NSPLFDGLPE--EFNIGLYHSWAVSEE---NF-PTPLEITAVCDENV-VMAMQHKTLPI-YGVQFHPESYISE 176 (190)
T ss_pred EEECC--CChhhhcCCC--ceEEEcchhheeccc---cc-CCCeEEEEECCCCc-EEEEEECCCCE-EEEEeCCCcCCCc
Confidence 22222 3334333333 244567788887643 23 56899999988887 99999999996 9999999998776
Q ss_pred CCCChHHHHHHHH
Q psy17159 285 LRPSPPFLGLILA 297 (326)
Q Consensus 285 ~~~~~lf~~Fl~~ 297 (326)
.+ ..+++||++.
T Consensus 177 ~g-~~il~nf~~~ 188 (190)
T PRK06895 177 FG-EQILRNWLAI 188 (190)
T ss_pred ch-HHHHHHHHhh
Confidence 54 5899999863
No 24
>PRK05670 anthranilate synthase component II; Provisional
Probab=99.95 E-value=4.1e-27 Score=207.19 Aligned_cols=187 Identities=21% Similarity=0.229 Sum_probs=120.5
Q ss_pred EEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCCCc
Q psy17159 47 TIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRGLE 126 (326)
Q Consensus 47 ~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~~~ 126 (326)
+|.|| |+ ++|+++++.+.-.+.+..+.++..+....+ ..+.+ ++|||||+||++++...
T Consensus 1 ~ilii-d~------~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~-------------~~~~~-~~dglIlsgGpg~~~d~ 59 (189)
T PRK05670 1 MILLI-DN------YDSFTYNLVQYLGELGAEVVVYRNDEITLE-------------EIEAL-NPDAIVLSPGPGTPAEA 59 (189)
T ss_pred CEEEE-EC------CCchHHHHHHHHHHCCCcEEEEECCCCCHH-------------HHHhC-CCCEEEEcCCCCChHHc
Confidence 38899 54 455555555555544545555444311100 01123 48999999999886432
Q ss_pred -hHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcceeecceeE
Q psy17159 127 -GKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHET 205 (326)
Q Consensus 127 -~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~lg~~~~ 205 (326)
...++++. +..++|+||||+|||+|+.++|+++....... + |....
T Consensus 60 ~~~~~~l~~-~~~~~PvLGIClG~Qlla~alGg~v~~~~~~~---------------------~-----------g~~~~ 106 (189)
T PRK05670 60 GISLELIRE-FAGKVPILGVCLGHQAIGEAFGGKVVRAKEIM---------------------H-----------GKTSP 106 (189)
T ss_pred chHHHHHHH-hcCCCCEEEECHHHHHHHHHhCCEEEecCCcc---------------------c-----------CceeE
Confidence 34455654 45689999999999999999999884322100 0 11111
Q ss_pred EEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEcccCCCcCCCC
Q psy17159 206 HFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPEYLSRPL 285 (326)
Q Consensus 206 ~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFHPE~~~~~~ 285 (326)
+.... .+++..+ .. .....++|++.|.+. .+ +++++++|+++++. +||+++++.++ ||+|||||+..++
T Consensus 107 v~~~~-~~l~~~~-~~--~~~v~~~H~~~v~~~---~l-p~~~~~la~s~~~~-i~a~~~~~~~~-~gvQfHPE~~~~~- 175 (189)
T PRK05670 107 IEHDG-SGIFAGL-PN--PFTVTRYHSLVVDRE---SL-PDCLEVTAWTDDGE-IMGVRHKELPI-YGVQFHPESILTE- 175 (189)
T ss_pred EEeCC-CchhccC-CC--CcEEEcchhheeccc---cC-CCceEEEEEeCCCc-EEEEEECCCCE-EEEeeCCCcCCCc-
Confidence 11121 2333222 22 244567788887531 24 67999999998887 99999998886 9999999998764
Q ss_pred CCChHHHHHHHHH
Q psy17159 286 RPSPPFLGLILAA 298 (326)
Q Consensus 286 ~~~~lf~~Fl~~a 298 (326)
...+||++|++.+
T Consensus 176 ~g~~i~~~F~~~~ 188 (189)
T PRK05670 176 HGHKLLENFLELA 188 (189)
T ss_pred chHHHHHHHHHhh
Confidence 3569999999864
No 25
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=99.95 E-value=1e-26 Score=213.54 Aligned_cols=169 Identities=22% Similarity=0.245 Sum_probs=116.2
Q ss_pred hhhcCCCEEEECCCCCCC-----------CC------chHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcc
Q psy17159 106 SDFCKVDGIIVPGGFGKR-----------GL------EGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADT 168 (326)
Q Consensus 106 ~~l~~~dglilpGG~~~~-----------~~------~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~ 168 (326)
+.++.+|||||+||+.+- .. ....++++.+++.++|+||||+|||+|+.++|+++..-....
T Consensus 57 ~~l~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~Qllnva~GGtl~~~~~~~- 135 (254)
T PRK11366 57 QLLPKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGLQELVVATGGSLHRKLCEQ- 135 (254)
T ss_pred HHHHhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHHhCCeEeeccccc-
Confidence 356789999999985321 00 134678899999999999999999999999999984321100
Q ss_pred cccCCCCCCccCCeeeccCCCCCCCCCcc---eeecceeEEEecCCCchHHhhhCC-C-cceeeecceeeeeCCcccccc
Q psy17159 169 EEEQPPGQTLEHPVVVYMPEHNPGNMGGT---MRLGKHETHFKPEHKSKLKLLYGN-K-DKIEERHRHRYEVNKKYVPDY 243 (326)
Q Consensus 169 ~~~~~~g~~~~~plv~~~~~~~~~~~~~~---~~lg~~~~~~~~~~~s~l~~~~~~-~-~~v~~~h~h~~~vn~~~v~~l 243 (326)
... .. |.... ... ...+.+.+.+.. ++++..+++. . ..++++|++ .+..+
T Consensus 136 ~~~-----------~~----h~~~~-~~~~~~~~~~~h~v~~~~--~s~l~~i~~~~~~~~Vns~H~q-------~V~~l 190 (254)
T PRK11366 136 PEL-----------LE----HREDP-ELPVEQQYAPSHEVQVEE--GGLLSALLPECSNFWVNSLHGQ-------GAKVV 190 (254)
T ss_pred ccc-----------cc----cccCC-ccccccccCCceEEEECC--CCcHHHhcCCCceEEeehHHHH-------HHhhc
Confidence 000 00 10000 000 001234555543 7888888742 2 135566654 25566
Q ss_pred cCCCeEEEEEcCCCCeEEEEEECCCCeEEEEcccCCCcCCCCCC-ChHHHHHHHHHHhhh
Q psy17159 244 EKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPEYLSRPLRP-SPPFLGLILAAAGKL 302 (326)
Q Consensus 244 ~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFHPE~~~~~~~~-~~lf~~Fl~~a~~~~ 302 (326)
+++++++|+++||. +||+++++++|++|||||||+..+.... .+||++|+++|.++.
T Consensus 191 -~~gl~v~A~s~dg~-ieAie~~~~~~~~GVQwHPE~~~~~~~~~~~lf~~fv~~~~~~~ 248 (254)
T PRK11366 191 -SPRLRVEARSPDGL-VEAVSVINHPFALGVQWHPEWNSSEYALSRILFEGFITACQHHI 248 (254)
T ss_pred -ccceEEEEEcCCCc-EEEEEeCCCCCEEEEEeCCCcCCCCCchHHHHHHHHHHHHHHHH
Confidence 88999999999998 9999999999889999999999876543 379999999886544
No 26
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=99.95 E-value=1.3e-26 Score=202.09 Aligned_cols=176 Identities=21% Similarity=0.295 Sum_probs=121.7
Q ss_pred EEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCC-Cc
Q psy17159 48 IGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRG-LE 126 (326)
Q Consensus 48 I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~-~~ 126 (326)
|+|+ |||+ . .++.+.|+.+|.. +.+...+. . .. .-...++|||||+||++.+. ..
T Consensus 1 i~i~-d~g~---~-~~~~~~l~~~G~~----~~~~~~~~-~---------~~-----~~~~~~~dgiil~GG~~~~~~~~ 56 (178)
T cd01744 1 VVVI-DFGV---K-HNILRELLKRGCE----VTVVPYNT-D---------AE-----EILKLDPDGIFLSNGPGDPALLD 56 (178)
T ss_pred CEEE-ecCc---H-HHHHHHHHHCCCe----EEEEECCC-C---------HH-----HHhhcCCCEEEECCCCCChhHhH
Confidence 6889 9986 2 4788888887763 23333221 0 00 01235799999999997653 34
Q ss_pred hHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcceeecceeEE
Q psy17159 127 GKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHETH 206 (326)
Q Consensus 127 ~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~lg~~~~~ 206 (326)
...++++++.+.++|+||||+|||+|+.++|+++.....++ .| .. +.+.
T Consensus 57 ~~~~~~~~~~~~~~PvlGIC~G~Q~l~~~~Gg~v~~~~~~~------~g--~~-----------------------~~v~ 105 (178)
T cd01744 57 EAIKTVRKLLGKKIPIFGICLGHQLLALALGAKTYKMKFGH------RG--SN-----------------------HPVK 105 (178)
T ss_pred HHHHHHHHHHhCCCCEEEECHHHHHHHHHcCCceecCCCCC------CC--Cc-----------------------eeeE
Confidence 56788999999999999999999999999999985422111 11 01 1111
Q ss_pred EecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEc-CCCCeEEEEEECCCCeEEEEcccCCCcCCCC
Q psy17159 207 FKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVD-EKEVRMEIAELRDHPYYVAVQFHPEYLSRPL 285 (326)
Q Consensus 207 ~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~-~dg~~veaie~~~~~~~~GvQFHPE~~~~~~ 285 (326)
... ... .....++|++.++++. + +++++++|++ +++. +||++++++|+ +|||||||+..++.
T Consensus 106 ~~~----------~~~-~~~v~~~H~~~v~~~~---l-p~~~~v~a~s~~~~~-i~a~~~~~~~i-~GvQfHPE~~~~~~ 168 (178)
T cd01744 106 DLI----------TGR-VYITSQNHGYAVDPDS---L-PGGLEVTHVNLNDGT-VEGIRHKDLPV-FSVQFHPEASPGPH 168 (178)
T ss_pred EcC----------CCC-cEEEEcCceEEEcccc---c-CCceEEEEEECCCCc-EEEEEECCCCe-EEEeeCCCCCCCCC
Confidence 111 111 2234566888887543 3 5699999998 4677 99999999996 99999999998765
Q ss_pred CCChHHHHHH
Q psy17159 286 RPSPPFLGLI 295 (326)
Q Consensus 286 ~~~~lf~~Fl 295 (326)
...+||.+|+
T Consensus 169 ~~~~lf~~f~ 178 (178)
T cd01744 169 DTEYLFDEFL 178 (178)
T ss_pred CchHhHhhhC
Confidence 6668999985
No 27
>PRK00758 GMP synthase subunit A; Validated
Probab=99.95 E-value=1.4e-26 Score=202.97 Aligned_cols=182 Identities=23% Similarity=0.237 Sum_probs=124.4
Q ss_pred EEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCC-CEEEECCCCCCCCC
Q psy17159 47 TIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKV-DGIIVPGGFGKRGL 125 (326)
Q Consensus 47 ~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~-dglilpGG~~~~~~ 125 (326)
+|+|| ||+. ++..++.++|+.+|.. +.+...+ . + .+.+.++ ||||||||++....
T Consensus 1 ~i~ii-d~~~--~~~~~i~~~l~~~g~~----~~~~~~~--~--------~-------~~~l~~~~dgivi~Gg~~~~~~ 56 (184)
T PRK00758 1 KIVVV-DNGG--QYNHLIHRTLRYLGVD----AKIIPNT--T--------P-------VEEIKAFEDGLILSGGPDIERA 56 (184)
T ss_pred CEEEE-ECCC--chHHHHHHHHHHcCCc----EEEEECC--C--------C-------HHHHhhcCCEEEECCCCChhhc
Confidence 38999 9887 7778888888888763 2222211 0 1 1256667 99999999853322
Q ss_pred chHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcceeecceeE
Q psy17159 126 EGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHET 205 (326)
Q Consensus 126 ~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~lg~~~~ 205 (326)
....+.++ +.++|+||||+|||+|+.++|+++..... ...|+..+
T Consensus 57 ~~~~~~l~---~~~~PilGIC~G~Q~L~~a~Gg~v~~~~~--------------------------------~~~g~~~i 101 (184)
T PRK00758 57 GNCPEYLK---ELDVPILGICLGHQLIAKAFGGEVGRGEY--------------------------------GEYALVEV 101 (184)
T ss_pred cccHHHHH---hCCCCEEEEeHHHHHHHHhcCcEEecCCC--------------------------------ceeeeEEE
Confidence 22223333 56899999999999999999988743210 01244445
Q ss_pred EEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEcccCCCcCCCC
Q psy17159 206 HFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPEYLSRPL 285 (326)
Q Consensus 206 ~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFHPE~~~~~~ 285 (326)
.+... +.++..+ .. .....+.|++.+ ..+ +++++++|+++++. ++|++++++++ +|+|||||+..++.
T Consensus 102 ~~~~~-~~l~~~~-~~--~~~~~~~H~~~v-----~~l-~~~~~~la~~~~~~-v~a~~~~~~~~-~g~QfHPE~~~~~~ 169 (184)
T PRK00758 102 EILDE-DDILKGL-PP--EIRVWASHADEV-----KEL-PDGFEILARSDICE-VEAMKHKEKPI-YGVQFHPEVAHTEY 169 (184)
T ss_pred EEcCC-ChhhhCC-CC--CcEEEeehhhhh-----hhC-CCCCEEEEECCCCC-EEEEEECCCCE-EEEEcCCccCCCch
Confidence 55443 4445443 23 234455666654 344 77999999999998 99999998886 99999999987743
Q ss_pred CCChHHHHHHHHHHh
Q psy17159 286 RPSPPFLGLILAAAG 300 (326)
Q Consensus 286 ~~~~lf~~Fl~~a~~ 300 (326)
...||++|++.+.+
T Consensus 170 -g~~l~~~f~~~~~~ 183 (184)
T PRK00758 170 -GEEIFKNFLEICGK 183 (184)
T ss_pred -HHHHHHHHHHHHcc
Confidence 45899999977643
No 28
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.95 E-value=9.1e-27 Score=203.22 Aligned_cols=181 Identities=19% Similarity=0.177 Sum_probs=123.9
Q ss_pred EEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCCCch
Q psy17159 48 IGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRGLEG 127 (326)
Q Consensus 48 I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~~~~ 127 (326)
|+|| |||+ ++-.++.++|+++|+. +.+...+.. . ....+.++||||||||++......
T Consensus 1 i~~i-D~g~--~~~~~~~~~l~~~G~~----~~~~~~~~~----------~-----~~~~~~~~dgvIl~Gg~~~~~~~~ 58 (181)
T cd01742 1 ILIL-DFGS--QYTHLIARRVRELGVY----SEILPNTTP----------L-----EEIKLKNPKGIILSGGPSSVYEED 58 (181)
T ss_pred CEEE-ECCC--chHHHHHHHHHhcCce----EEEecCCCC----------h-----hhhcccCCCEEEECCCcccccccc
Confidence 6789 9997 7777889999988763 333333210 0 011467899999999987643322
Q ss_pred HHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcceeecceeEEE
Q psy17159 128 KIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHETHF 207 (326)
Q Consensus 128 ~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~lg~~~~~~ 207 (326)
.....++.++.++|+||||+|||+|+.++|+++...... ..|+..+..
T Consensus 59 ~~~~~~~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~--------------------------------~~G~~~v~~ 106 (181)
T cd01742 59 APRVDPEIFELGVPVLGICYGMQLIAKALGGKVERGDKR--------------------------------EYGKAEIEI 106 (181)
T ss_pred cchhhHHHHhcCCCEEEEcHHHHHHHHhcCCeEEeCCCC--------------------------------cceEEEEEe
Confidence 234456666779999999999999999999887432110 124444433
Q ss_pred ecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEcccCCCcCCCCCC
Q psy17159 208 KPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPEYLSRPLRP 287 (326)
Q Consensus 208 ~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFHPE~~~~~~~~ 287 (326)
.. .+.+...... .....+.|++.| ..+ +++++++|+++++. ++|+++++.++ ||+|||||++.++. +
T Consensus 107 ~~--~~~l~~~~~~--~~~~~~~H~~~v-----~~l-~~~~~~la~~~~~~-i~a~~~~~~~~-~g~QfHPE~~~~~~-g 173 (181)
T cd01742 107 DD--SSPLFEGLPD--EQTVWMSHGDEV-----VKL-PEGFKVIASSDNCP-VAAIANEEKKI-YGVQFHPEVTHTEK-G 173 (181)
T ss_pred cC--CChhhcCCCC--ceEEEcchhhhh-----hhc-CCCcEEEEeCCCCC-EEEEEeCCCcE-EEEEcCCccccCcC-h
Confidence 33 3333333222 234455677654 344 77999999999888 99999998786 99999999998753 4
Q ss_pred ChHHHHHH
Q psy17159 288 SPPFLGLI 295 (326)
Q Consensus 288 ~~lf~~Fl 295 (326)
.++|++|+
T Consensus 174 ~~ll~~f~ 181 (181)
T cd01742 174 KEILKNFL 181 (181)
T ss_pred HHHHHhhC
Confidence 68999984
No 29
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=99.94 E-value=2.4e-26 Score=206.01 Aligned_cols=149 Identities=21% Similarity=0.305 Sum_probs=107.3
Q ss_pred hhcCCCEEEECCCCCCCCC-chHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeec
Q psy17159 107 DFCKVDGIIVPGGFGKRGL-EGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVY 185 (326)
Q Consensus 107 ~l~~~dglilpGG~~~~~~-~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~ 185 (326)
.++.+|||||+||++++.. .....+++++.+.++|+||||+|||+|+.++|+++.......
T Consensus 43 ~~~~~dgliisGGp~~~~~~~~~~~~i~~~~~~~~PiLGIC~G~Qlla~a~GG~v~~~~~~~------------------ 104 (214)
T PRK07765 43 VAAQFDGVLLSPGPGTPERAGASIDMVRACAAAGTPLLGVCLGHQAIGVAFGATVDRAPELL------------------ 104 (214)
T ss_pred hhcCCCEEEECCCCCChhhcchHHHHHHHHHhCCCCEEEEccCHHHHHHHhCCEEeeCCCCc------------------
Confidence 3568999999999987643 345678999998999999999999999999999984321110
Q ss_pred cCCCCCCCCCcceeecc-eeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEE
Q psy17159 186 MPEHNPGNMGGTMRLGK-HETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAE 264 (326)
Q Consensus 186 ~~~~~~~~~~~~~~lg~-~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie 264 (326)
+ |. +.+.+.. .+++..+. . ....+++|+|.+.+. .+ ++++.++|+++++. ++|++
T Consensus 105 ---~-----------g~~~~v~~~~--~~~~~~~~-~--~~~v~~~H~~~v~~~---~l-p~~~~vla~s~~~~-vqa~~ 160 (214)
T PRK07765 105 ---H-----------GKTSSVHHTG--VGVLAGLP-D--PFTATRYHSLTILPE---TL-PAELEVTARTDSGV-IMAVR 160 (214)
T ss_pred ---c-----------CceeEEEECC--CccccCCC-C--ccEEEecchheEecc---cC-CCceEEEEEcCCCc-EEEEE
Confidence 0 11 1122222 33343332 2 234556677776532 33 67999999999998 99999
Q ss_pred ECCCCeEEEEcccCCCcCCCCCCChHHHHHHHHHH
Q psy17159 265 LRDHPYYVAVQFHPEYLSRPLRPSPPFLGLILAAA 299 (326)
Q Consensus 265 ~~~~~~~~GvQFHPE~~~~~~~~~~lf~~Fl~~a~ 299 (326)
++++++ ||||||||+..+..+ ..++.+|+..|.
T Consensus 161 ~~~~~i-~gvQfHPE~~~t~~g-~~~l~~f~~~~~ 193 (214)
T PRK07765 161 HRELPI-HGVQFHPESVLTEGG-HRMLANWLTVCG 193 (214)
T ss_pred eCCCCE-EEEeeCCCcccCcch-HHHHHHHHHHhc
Confidence 999886 999999999866543 489999997763
No 30
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=99.94 E-value=8.6e-27 Score=205.05 Aligned_cols=188 Identities=28% Similarity=0.403 Sum_probs=128.4
Q ss_pred EEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCC-Cch
Q psy17159 49 GLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRG-LEG 127 (326)
Q Consensus 49 ~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~-~~~ 127 (326)
.|| |++. ....++.++|++. +.++++++++..... ..+.+.++|||||+||++... ...
T Consensus 1 lvi-D~~~--~~~~~l~~~l~~~----~~~~~v~~~~~~~~~-------------~~~~~~~~d~iii~Gg~~~~~d~~~ 60 (192)
T PF00117_consen 1 LVI-DNGD--SFTHSLVRALREL----GIDVEVVRVDSDFEE-------------PLEDLDDYDGIIISGGPGSPYDIEG 60 (192)
T ss_dssp EEE-ESSH--TTHHHHHHHHHHT----TEEEEEEETTGGHHH-------------HHHHTTTSSEEEEECESSSTTSHHH
T ss_pred CEE-eCCH--HHHHHHHHHHHHC----CCeEEEEECCCchhh-------------hhhhhcCCCEEEECCcCCccccccc
Confidence 367 5543 3444455555544 446677777642110 111378999999999999876 567
Q ss_pred HHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcceeecceeEEE
Q psy17159 128 KIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHETHF 207 (326)
Q Consensus 128 ~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~lg~~~~~~ 207 (326)
...+++++++.++|+||||+|||+|+.++|+++....+. + ..|+...+.
T Consensus 61 ~~~~i~~~~~~~~PilGIC~G~Q~la~~~G~~v~~~~~~--------------~-----------------~~g~~~~~~ 109 (192)
T PF00117_consen 61 LIELIREARERKIPILGICLGHQILAHALGGKVVPSPEK--------------P-----------------HHGGNIPIS 109 (192)
T ss_dssp HHHHHHHHHHTTSEEEEETHHHHHHHHHTTHEEEEEESE--------------E-----------------EEEEEEEEE
T ss_pred cccccccccccceEEEEEeehhhhhHHhcCCcccccccc--------------c-----------------ccccccccc
Confidence 888899999999999999999999999999988422100 0 012222222
Q ss_pred ecCCC-chHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCC-CeEEEEEECCCCeEEEEcccCCCcCCCC
Q psy17159 208 KPEHK-SKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKE-VRMEIAELRDHPYYVAVQFHPEYLSRPL 285 (326)
Q Consensus 208 ~~~~~-s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg-~~veaie~~~~~~~~GvQFHPE~~~~~~ 285 (326)
... . .++. +.......+++|+|.|++. .+.+++++++|++.++ . ++++.+.++|+ +|+|||||++.+..
T Consensus 110 ~~~-~~~~~~---~~~~~~~~~~~H~~~v~~~---~~~p~~~~~la~s~~~~~-~~~~~~~~~~i-~g~QfHPE~~~~~~ 180 (192)
T PF00117_consen 110 ETP-EDPLFY---GLPESFKAYQYHSDAVNPD---DLLPEGFEVLASSSDGCP-IQAIRHKDNPI-YGVQFHPEFSSSPG 180 (192)
T ss_dssp EEE-EHGGGT---TSTSEEEEEEEECEEEEEG---HHHHTTEEEEEEETTTTE-EEEEEECTTSE-EEESSBTTSTTSTT
T ss_pred ccc-cccccc---ccccccccccccceeeecc---cccccccccccccccccc-cccccccccEE-EEEecCCcCCCCCC
Confidence 211 1 2222 2212467788899998753 2227899999999876 6 89999999895 99999999999876
Q ss_pred CCChHHHHHHHH
Q psy17159 286 RPSPPFLGLILA 297 (326)
Q Consensus 286 ~~~~lf~~Fl~~ 297 (326)
+. .++.+|+..
T Consensus 181 ~~-~~l~nf~~~ 191 (192)
T PF00117_consen 181 GP-QLLKNFFLK 191 (192)
T ss_dssp HH-HHHHHHHHH
T ss_pred cc-hhhhheeEe
Confidence 54 688888754
No 31
>PRK05637 anthranilate synthase component II; Provisional
Probab=99.94 E-value=4.2e-26 Score=203.42 Aligned_cols=201 Identities=19% Similarity=0.205 Sum_probs=118.5
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKR 123 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~ 123 (326)
.+|++| ||+. ++..++.+.|+.+|. .+.+...+. . .+.+ .++|+|||+|||+.+
T Consensus 2 ~~il~i-D~~d--sf~~nl~~~l~~~g~----~~~v~~~~~-~----------------~~~l~~~~~~~iIlsgGPg~~ 57 (208)
T PRK05637 2 THVVLI-DNHD--SFVYNLVDAFAVAGY----KCTVFRNTV-P----------------VEEILAANPDLICLSPGPGHP 57 (208)
T ss_pred CEEEEE-ECCc--CHHHHHHHHHHHCCC----cEEEEeCCC-C----------------HHHHHhcCCCEEEEeCCCCCH
Confidence 479999 6654 455556666665554 334333221 0 1122 378999999999987
Q ss_pred CCch-HHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcceeecc
Q psy17159 124 GLEG-KIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGK 202 (326)
Q Consensus 124 ~~~~-~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~lg~ 202 (326)
...+ ..++++.+. .++|+||||+|||+|+.++|+++..... + .|. ..+ +. ...+... ..+ ++.
T Consensus 58 ~d~~~~~~li~~~~-~~~PiLGIClG~Qlla~alGG~V~~~~~----~---~G~--~~~-i~-~~~~~~~---~~l-~~~ 121 (208)
T PRK05637 58 RDAGNMMALIDRTL-GQIPLLGICLGFQALLEHHGGKVEPCGP----V---HGT--TDN-MI-LTDAGVQ---SPV-FAG 121 (208)
T ss_pred HHhhHHHHHHHHHh-CCCCEEEEcHHHHHHHHHcCCeeccCCc----c---cce--EEE-eE-ECCCCCC---Ccc-cCC
Confidence 5433 345565543 5799999999999999999999853211 0 010 000 00 0000000 000 000
Q ss_pred eeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCC--CCeEEEEEECCCCeEEEEcccCCC
Q psy17159 203 HETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEK--EVRMEIAELRDHPYYVAVQFHPEY 280 (326)
Q Consensus 203 ~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~d--g~~veaie~~~~~~~~GvQFHPE~ 280 (326)
..+.. .+....+.|....++.+| ++. +..+ +++++++|++++ +.++++++++++++ ||||||||+
T Consensus 122 ~~~~~----~~~~~~~~g~~~~V~~~H--~~~-----v~~l-p~~~~vlA~s~~~~~~v~~a~~~~~~~~-~GvQfHPE~ 188 (208)
T PRK05637 122 LATDV----EPDHPEIPGRKVPIARYH--SLG-----CVVA-PDGMESLGTCSSEIGPVIMAAETTDGKA-IGLQFHPES 188 (208)
T ss_pred CCccc----ccccccccCCceEEEEec--hhh-----hhcC-CCCeEEEEEecCCCCCEEEEEEECCCCE-EEEEeCCcc
Confidence 00000 000112223322345554 333 3344 789999999764 44589999998886 999999999
Q ss_pred cCCCCCCChHHHHHHHHHHh
Q psy17159 281 LSRPLRPSPPFLGLILAAAG 300 (326)
Q Consensus 281 ~~~~~~~~~lf~~Fl~~a~~ 300 (326)
..|+.+ ..+|.||++..++
T Consensus 189 ~~T~~G-~~il~nfl~~~~~ 207 (208)
T PRK05637 189 VLSPTG-PIILSRCVEQLLA 207 (208)
T ss_pred CcCCCH-HHHHHHHHHHHhc
Confidence 999865 5899999998764
No 32
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=99.94 E-value=2.7e-26 Score=202.71 Aligned_cols=186 Identities=20% Similarity=0.224 Sum_probs=123.5
Q ss_pred EEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCCCc-
Q psy17159 48 IGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRGLE- 126 (326)
Q Consensus 48 I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~~~- 126 (326)
|.+| ||++|+.++|.+.-.+.+..+.++..+..++.+ ... .++|+||++|||+.+...
T Consensus 2 il~i-------d~~dsft~~~~~~l~~~g~~~~~~~~~~~~~~~-------------~~~-~~~~~iilsgGp~~~~~~~ 60 (193)
T PRK08857 2 LLMI-------DNYDSFTYNLYQYFCELGAQVKVVRNDEIDIDG-------------IEA-LNPTHLVISPGPCTPNEAG 60 (193)
T ss_pred EEEE-------ECCCCcHHHHHHHHHHCCCcEEEEECCCCCHHH-------------Hhh-CCCCEEEEeCCCCChHHCc
Confidence 7888 788888888887777666666655544211110 011 258999999999876432
Q ss_pred hHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcceeecceeEE
Q psy17159 127 GKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHETH 206 (326)
Q Consensus 127 ~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~lg~~~~~ 206 (326)
....+++. ++.++|+||||+|||+|+.++|+++....... .|+...+
T Consensus 61 ~~~~~i~~-~~~~~PiLGIClG~Qlia~a~Gg~v~~~~~~~--------------------------------~G~~~~~ 107 (193)
T PRK08857 61 ISLQAIEH-FAGKLPILGVCLGHQAIAQVFGGQVVRARQVM--------------------------------HGKTSPI 107 (193)
T ss_pred chHHHHHH-hcCCCCEEEEcHHHHHHHHHhCCEEEeCCCce--------------------------------eCceEEE
Confidence 24456655 57899999999999999999999885422110 0111111
Q ss_pred EecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcC--CCC--eEEEEEECCCCeEEEEcccCCCcC
Q psy17159 207 FKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDE--KEV--RMEIAELRDHPYYVAVQFHPEYLS 282 (326)
Q Consensus 207 ~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~--dg~--~veaie~~~~~~~~GvQFHPE~~~ 282 (326)
.... .+++..+. . .....++|++.+.+. .+ +++++++|+++ ++. .+++++++++|+ ||||||||+..
T Consensus 108 ~~~~-~~l~~~~~-~--~~~v~~~H~~~v~~~---~l-p~~~~v~a~s~~~~~~~~~i~~~~~~~~pi-~gvQfHPE~~~ 178 (193)
T PRK08857 108 RHTG-RSVFKGLN-N--PLTVTRYHSLVVKND---TL-PECFELTAWTELEDGSMDEIMGFQHKTLPI-EAVQFHPESIK 178 (193)
T ss_pred EECC-CcccccCC-C--ccEEEEccEEEEEcC---CC-CCCeEEEEEecCcCCCcceEEEEEeCCCCE-EEEeeCCCcCC
Confidence 1111 33443332 2 234556677877532 34 67999999986 432 488999999997 99999999998
Q ss_pred CCCCCChHHHHHHHH
Q psy17159 283 RPLRPSPPFLGLILA 297 (326)
Q Consensus 283 ~~~~~~~lf~~Fl~~ 297 (326)
+.. +..+|++|++.
T Consensus 179 t~~-g~~i~~nFl~~ 192 (193)
T PRK08857 179 TEQ-GHQLLANFLAR 192 (193)
T ss_pred Ccc-hHHHHHHHHhh
Confidence 765 56999999864
No 33
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.94 E-value=3.3e-26 Score=202.57 Aligned_cols=188 Identities=16% Similarity=0.195 Sum_probs=120.4
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECC-CCCCCC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPG-GFGKRG 124 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpG-G~~~~~ 124 (326)
|||+|| |||. +|++|+.++|++++++ +.++.. .+.+.++|+||||| |.....
T Consensus 1 m~i~ii-d~g~--gn~~s~~~~l~~~g~~------~~~v~~------------------~~~~~~~d~iIlPG~G~~~~~ 53 (196)
T PRK13170 1 MNVVII-DTGC--ANLSSVKFAIERLGYE------PVVSRD------------------PDVILAADKLFLPGVGTAQAA 53 (196)
T ss_pred CeEEEE-eCCC--chHHHHHHHHHHCCCe------EEEECC------------------HHHhCCCCEEEECCCCchHHH
Confidence 589999 9999 9999999999988753 223331 12577899999987 321111
Q ss_pred CchH--HHHHHHHHHcCCCEEEEehhHHHHHHHhC----cccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcce
Q psy17159 125 LEGK--IAACKWARENNKPFLGICLGLQAAVIEYG----RSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTM 198 (326)
Q Consensus 125 ~~~~--~~~i~~~~~~~~PvLGIClG~QlL~~~~g----~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~ 198 (326)
...+ ..+++.+.+.++|+||||+|||+|+.+++ .+.+++.++.+.++... +.+ + -
T Consensus 54 ~~~l~~~~l~~~i~~~~~PilGIClG~Qll~~~~~~~~~~~~lg~~~g~v~~~~~~----~~~-~--------------p 114 (196)
T PRK13170 54 MDQLRERELIDLIKACTQPVLGICLGMQLLGERSEESGGVDCLGIIDGPVKKMTDF----GLP-L--------------P 114 (196)
T ss_pred HHHHHHcChHHHHHHcCCCEEEECHHHHHHhhhcccCCCCCCcccccEEEEECCCC----CCC-C--------------C
Confidence 1111 12334444568999999999999999863 24566666666554211 001 0 1
Q ss_pred eecceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEcccC
Q psy17159 199 RLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHP 278 (326)
Q Consensus 199 ~lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFHP 278 (326)
..|++.+.+... +.++..+ .. ....+++|+|.+. .+..++|+++++. ..+..+.+.++ ||+||||
T Consensus 115 ~~G~~~v~~~~~-~~l~~~l-~~--~~~v~~~Hs~~lp---------~~~~~la~s~~~~-~~~~~~~~~~i-~G~QFHP 179 (196)
T PRK13170 115 HMGWNQVTPQAG-HPLFQGI-ED--GSYFYFVHSYAMP---------VNEYTIAQCNYGE-PFSAAIQKDNF-FGVQFHP 179 (196)
T ss_pred ccccceeEeCCC-ChhhhCC-Cc--CCEEEEECeeecC---------CCCcEEEEecCCC-eEEEEEEcCCE-EEEECCC
Confidence 257877776543 3344443 33 2456777888642 2445778887766 33333445555 9999999
Q ss_pred CCcCCCCCCChHHHHHHH
Q psy17159 279 EYLSRPLRPSPPFLGLIL 296 (326)
Q Consensus 279 E~~~~~~~~~~lf~~Fl~ 296 (326)
|++. .. +..+++||++
T Consensus 180 E~~~-~~-G~~~l~nfl~ 195 (196)
T PRK13170 180 ERSG-AA-GAQLLKNFLE 195 (196)
T ss_pred CCcc-cc-cHHHHHHHhh
Confidence 9985 33 5689999985
No 34
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=99.94 E-value=2.3e-25 Score=214.41 Aligned_cols=214 Identities=18% Similarity=0.233 Sum_probs=148.2
Q ss_pred CcHHHHHHHhhcCCCCCCCeeeCCCCCcccccchh---hhh-----cCCCceEEEEEcccCCCchhHHHHHHHHHHHhhh
Q psy17159 3 DTESVRAKISMFCHVTPENVIFNPDVKPIYKVRML---RID-----RLNKTVTIGLVGKYTKFEDCYASLTRALEHASYH 74 (326)
Q Consensus 3 ~~~~~~~ki~~~~~~~~~~v~~~~~~~~~y~~p~~---~~~-----~~~~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~ 74 (326)
|.+++++++..+ .+...+++..++++..|.+... .|. ......+|+++ ||| +..++++.|...|+.
T Consensus 191 ~~~~~~~~~~~~-~~~~~~lv~~Vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivvi-D~G----~K~nIlr~L~~~G~~ 264 (415)
T PLN02771 191 TDEELLKMSRSW-DIVGIDLISGVSCKSPYEWVDKTNPEWDFNTNSRDGESYHVIAY-DFG----IKHNILRRLASYGCK 264 (415)
T ss_pred CHHHHHHHHHhC-CCccCCccceecCCCCEEecCCCcccccccccccCCCCCEEEEE-CCC----hHHHHHHHHHHcCCe
Confidence 344567777767 7788899999999999988421 110 01112689999 985 689999999998874
Q ss_pred cCCceEEEEeecccccCCCCCCCchhhcchhhhh-cCCCEEEECCCCCCCCC-chHHHHHHHHHHcCCCEEEEehhHHHH
Q psy17159 75 SNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF-CKVDGIIVPGGFGKRGL-EGKIAACKWARENNKPFLGICLGLQAA 152 (326)
Q Consensus 75 ~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l-~~~dglilpGG~~~~~~-~~~~~~i~~~~~~~~PvLGIClG~QlL 152 (326)
+ .+ ++... + ..+.+ .++|||||+||||++.. ...++.++++. .++|+||||+|||+|
T Consensus 265 v----~V--vP~~~---------~-----~~ei~~~~pDGIiLSnGPGDP~~~~~~ie~ik~l~-~~iPIlGICLGhQlL 323 (415)
T PLN02771 265 I----TV--VPSTW---------P-----ASEALKMKPDGVLFSNGPGDPSAVPYAVETVKELL-GKVPVFGICMGHQLL 323 (415)
T ss_pred E----EE--ECCCC---------C-----HHHHhhcCCCEEEEcCCCCChhHhhHHHHHHHHHH-hCCCEEEEcHHHHHH
Confidence 2 22 22111 0 11122 37899999999998753 33456667665 489999999999999
Q ss_pred HHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcceeecceeEEEecCCCchHHhhhCCCcceeeeccee
Q psy17159 153 VIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHR 232 (326)
Q Consensus 153 ~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~ 232 (326)
+.++|+++.++..++ +| .++| +.... . +. ...+.++|+
T Consensus 324 a~AlGGkv~K~~~Gh------~G--~n~p-----------------------V~~~~--~-------~~--v~itsqnHg 361 (415)
T PLN02771 324 GQALGGKTFKMKFGH------HG--GNHP-----------------------VRNNR--T-------GR--VEISAQNHN 361 (415)
T ss_pred HHhcCCeEEECCCCc------cc--ceEE-----------------------EEECC--C-------CC--EEEEecCHH
Confidence 999999987654332 21 2223 11111 0 11 223456799
Q ss_pred eeeCCcccccccCCCeEEEEEc-CCCCeEEEEEECCCCeEEEEcccCCCcCCCCCCChHH
Q psy17159 233 YEVNKKYVPDYEKHGFLFTGVD-EKEVRMEIAELRDHPYYVAVQFHPEYLSRPLRPSPPF 291 (326)
Q Consensus 233 ~~vn~~~v~~l~~~gl~v~a~~-~dg~~veaie~~~~~~~~GvQFHPE~~~~~~~~~~lf 291 (326)
|.|++..+ +.++++++++ .|+. +|++++++.|+ +|||||||....|.+...+|
T Consensus 362 ~aVd~~sL----p~~~~vt~~nlnDgt-vegi~~~~~pi-~gVQFHPEa~pgp~Ds~~~F 415 (415)
T PLN02771 362 YAVDPASL----PEGVEVTHVNLNDGS-CAGLAFPALNV-MSLQYHPEASPGPHDSDNAF 415 (415)
T ss_pred HhhccccC----CCceEEEEEeCCCCc-EEEEEECCCCE-EEEEcCCCCCCCCCcChhhC
Confidence 99876543 5689999998 5777 99999999997 99999999999887765444
No 35
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.94 E-value=6.5e-26 Score=202.60 Aligned_cols=196 Identities=20% Similarity=0.236 Sum_probs=128.2
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCC-
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRG- 124 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~- 124 (326)
|||+|| |||. ||..|+.++|+++|+.+ ++.++.. .++++++|+|||||+.....
T Consensus 2 ~~~~ii-d~g~--gn~~s~~~al~~~g~~~----~v~~~~~------------------~~~l~~~d~lIlpG~~~~~~~ 56 (209)
T PRK13146 2 MTVAII-DYGS--GNLRSAAKALERAGAGA----DVVVTAD------------------PDAVAAADRVVLPGVGAFADC 56 (209)
T ss_pred CeEEEE-ECCC--ChHHHHHHHHHHcCCCc----cEEEECC------------------HHHhcCCCEEEECCCCcHHHH
Confidence 689999 9999 99999999999998742 3444431 23688999999999643211
Q ss_pred -----CchHHHH-HHHHHHcCCCEEEEehhHHHHHHH---hC-cccccccCCcccccCCCCCCccCCeeeccCCCCCCCC
Q psy17159 125 -----LEGKIAA-CKWARENNKPFLGICLGLQAAVIE---YG-RSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNM 194 (326)
Q Consensus 125 -----~~~~~~~-i~~~~~~~~PvLGIClG~QlL~~~---~g-~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~ 194 (326)
..+.... ++.+.+.++|+||||+|||+|+.. +| ...+++.++.+.++.+.|...+.|
T Consensus 57 ~~~l~~~~~~~~~~~~~~~~~~PvlGiC~G~q~l~~~~~e~~~~~glg~l~g~v~~~~~~~~~~~~p------------- 123 (209)
T PRK13146 57 MRGLRAVGLGEAVIEAVLAAGRPFLGICVGMQLLFERGLEHGDTPGLGLIPGEVVRFQPDGPALKVP------------- 123 (209)
T ss_pred HHHHHHCCcHHHHHHHHHhCCCcEEEECHHHHHHhhcccccCCCCCcceEeEEEEEcCCCCCCCccC-------------
Confidence 1123344 444556899999999999999976 32 345666666665542222100111
Q ss_pred CcceeecceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEE
Q psy17159 195 GGTMRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAV 274 (326)
Q Consensus 195 ~~~~~lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~Gv 274 (326)
..|++.+..... +.++..+ .. ....+++|+|.+.+ .++..++|+++++..++++.. +.++ |||
T Consensus 124 ----~~G~~~v~~~~~-~~lf~~~-~~--~~~v~~~Hs~~v~~-------~~~~~~la~s~~~~~~~a~~~-~~~i-~Gv 186 (209)
T PRK13146 124 ----HMGWNTVDQTRD-HPLFAGI-PD--GARFYFVHSYYAQP-------ANPADVVAWTDYGGPFTAAVA-RDNL-FAT 186 (209)
T ss_pred ----ccChHHeeeCCC-ChhccCC-CC--CCEEEEEeEEEEEc-------CCCCcEEEEEcCCCEEEEEEe-cCCE-EEE
Confidence 247777766543 3444443 33 23456778887642 124578898887653666654 4565 999
Q ss_pred cccCCCcCCCCCCChHHHHHHHHH
Q psy17159 275 QFHPEYLSRPLRPSPPFLGLILAA 298 (326)
Q Consensus 275 QFHPE~~~~~~~~~~lf~~Fl~~a 298 (326)
|||||++. . ....+++||++.+
T Consensus 187 QFHPE~s~-~-~G~~ll~nfl~~~ 208 (209)
T PRK13146 187 QFHPEKSQ-D-AGLALLRNFLAWL 208 (209)
T ss_pred EcCCcccH-H-HHHHHHHHHHhhc
Confidence 99999974 3 3458999998753
No 36
>PLN02347 GMP synthetase
Probab=99.93 E-value=2.1e-25 Score=223.24 Aligned_cols=187 Identities=20% Similarity=0.238 Sum_probs=129.3
Q ss_pred EEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhc--CCCEEEECCCCCCCC
Q psy17159 47 TIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFC--KVDGIIVPGGFGKRG 124 (326)
Q Consensus 47 ~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~--~~dglilpGG~~~~~ 124 (326)
+|+|| |||+ .+-.++.++|+++|..+ .+...+. + .+.+. ++|||||||||+...
T Consensus 12 ~IlII-D~G~--~~t~~I~r~lrelgv~~----~v~p~~~----------~-------~~~i~~~~~dgIILsGGP~sv~ 67 (536)
T PLN02347 12 VVLIL-DYGS--QYTHLITRRVRELGVYS----LLLSGTA----------S-------LDRIASLNPRVVILSGGPHSVH 67 (536)
T ss_pred EEEEE-ECCC--cHHHHHHHHHHHCCCeE----EEEECCC----------C-------HHHHhcCCCCEEEECCCCCccc
Confidence 79999 9998 77788999999887632 2222111 1 12333 689999999997653
Q ss_pred Cc---hH-HHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcceee
Q psy17159 125 LE---GK-IAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRL 200 (326)
Q Consensus 125 ~~---~~-~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~l 200 (326)
.. .. ..+++.+.+.++|+||||+|||+|+.++|+++..... ...
T Consensus 68 ~~~~p~~~~~i~~~~~~~~iPILGIClG~QlLa~alGG~V~~~~~--------------------------------~e~ 115 (536)
T PLN02347 68 VEGAPTVPEGFFDYCRERGVPVLGICYGMQLIVQKLGGEVKPGEK--------------------------------QEY 115 (536)
T ss_pred ccCCchhhHHHHHHHHhcCCcEEEECHHHHHHHHHcCCEEEecCC--------------------------------ccc
Confidence 21 11 2344555567999999999999999999998843210 013
Q ss_pred cceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEcccCCC
Q psy17159 201 GKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPEY 280 (326)
Q Consensus 201 g~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFHPE~ 280 (326)
|+..+.+.. ++.++...........++.|++.+. .+ +++++++|++++|. ++|+++++.++ ||||||||+
T Consensus 116 G~~~v~i~~--~~~Lf~~l~~~~~~~v~~~Hsd~V~-----~l-P~g~~vlA~s~~~~-iaai~~~~~~i-~GvQFHPE~ 185 (536)
T PLN02347 116 GRMEIRVVC--GSQLFGDLPSGETQTVWMSHGDEAV-----KL-PEGFEVVAKSVQGA-VVAIENRERRI-YGLQYHPEV 185 (536)
T ss_pred ceEEEEEcC--CChhhhcCCCCceEEEEEEEEEEee-----eC-CCCCEEEEEeCCCc-EEEEEECCCCE-EEEEccCCC
Confidence 555555443 3333333222112345566777653 44 78999999999998 89999999997 999999999
Q ss_pred cCCCCCCChHHHHHHHHHHh
Q psy17159 281 LSRPLRPSPPFLGLILAAAG 300 (326)
Q Consensus 281 ~~~~~~~~~lf~~Fl~~a~~ 300 (326)
..++.+ ..+++||+...++
T Consensus 186 ~~t~~G-~~iL~NFl~~ic~ 204 (536)
T PLN02347 186 THSPKG-METLRHFLFDVCG 204 (536)
T ss_pred CccchH-HHHHHHHHHHHhC
Confidence 987754 5899999876653
No 37
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=99.93 E-value=1.5e-25 Score=233.21 Aligned_cols=196 Identities=16% Similarity=0.132 Sum_probs=134.5
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhc-CCceEEEEeecccccCCCCCCCchhhcchhh---hhcCCCEEEECCCCC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHS-NRHLQLKYFDSELLSMDPKTGNMAEYHKTWS---DFCKVDGIIVPGGFG 121 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~-~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~---~l~~~dglilpGG~~ 121 (326)
|+|.+| |||+|++++|.+.-..+ +..+.++..+..++++ +.. .+..+|+|||+||||
T Consensus 82 ~~iLlI-------DnyDSfTyNL~~~L~~~~g~~~~Vv~nd~~~~~~------------~~~~~~~~~~~d~IVlSPGPG 142 (918)
T PLN02889 82 VRTLLI-------DNYDSYTYNIYQELSIVNGVPPVVVRNDEWTWEE------------VYHYLYEEKAFDNIVISPGPG 142 (918)
T ss_pred ceEEEE-------eCCCchHHHHHHHHHHhcCCCEEEEeCCCCCHHH------------HHhhhhcccCCCEEEECCCCC
Confidence 789999 89999999999988776 6666655555322111 111 135789999999999
Q ss_pred CCCCc---h-HHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcc
Q psy17159 122 KRGLE---G-KIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGT 197 (326)
Q Consensus 122 ~~~~~---~-~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~ 197 (326)
.+... + ..++|..+ .++||||||||||+|+.++|+++....... |
T Consensus 143 ~P~~~~d~Gi~~~~i~~~--~~iPILGICLGhQ~i~~~~Gg~V~~~~~~~---------------------H-------- 191 (918)
T PLN02889 143 SPTCPADIGICLRLLLEC--RDIPILGVCLGHQALGYVHGARIVHAPEPV---------------------H-------- 191 (918)
T ss_pred CccchHHHHHHHHHHHHh--CCCcEEEEcHHHHHHHHhcCceEEeCCCce---------------------e--------
Confidence 88532 2 23344432 479999999999999999999984432111 1
Q ss_pred eeecceeEEEecCCCchHHhhhCC--CcceeeecceeeeeCCcccccccCCCeEEEEEcCC-------------------
Q psy17159 198 MRLGKHETHFKPEHKSKLKLLYGN--KDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEK------------------- 256 (326)
Q Consensus 198 ~~lg~~~~~~~~~~~s~l~~~~~~--~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~d------------------- 256 (326)
|....+.+.. ..++.++... ..+...|| |++.|++. .+ +++++++|++.+
T Consensus 192 ---G~~s~I~h~~-~~lF~glp~~~~~~f~v~RY-HSL~v~~~---~l-P~~L~~~A~t~~~~~~~~~~~~~~~~~~~a~ 262 (918)
T PLN02889 192 ---GRLSEIEHNG-CRLFDDIPSGRNSGFKVVRY-HSLVIDAE---SL-PKELVPIAWTSSSDTLSFLESQKSGLVPDAY 262 (918)
T ss_pred ---eeeeeEeecC-chhhcCCCcCCCCCceEEeC-CCcccccC---CC-CCceEEEEEECCCcccccccccccccccccc
Confidence 2222222222 3445544321 12455665 78877643 23 678999998754
Q ss_pred ---------------------------------CCeEEEEEECCCCeEEEEcccCCCcCCCCCCChHHHHHHHHHHhhh
Q psy17159 257 ---------------------------------EVRMEIAELRDHPYYVAVQFHPEYLSRPLRPSPPFLGLILAAAGKL 302 (326)
Q Consensus 257 ---------------------------------g~~veaie~~~~~~~~GvQFHPE~~~~~~~~~~lf~~Fl~~a~~~~ 302 (326)
+.++||++|+.+|+ ||||||||+..++.+ ..||.||++++..++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viMairH~~~P~-~GVQfHPESi~t~~G-~~l~~nF~~~~~~~~ 339 (918)
T PLN02889 263 ESQIGQSGSSDPFSSKLKNGTSWPSSHSERMQNGKILMGIMHSTRPH-YGLQFHPESIATCYG-RQIFKNFREITQDYW 339 (918)
T ss_pred cccccccccccccccccccccccccccccccCCCCeeEEEEECCCce-EEEEeCCccccCchh-HHHHHHHHHHHHHHh
Confidence 13599999999998 999999999999764 699999999998765
No 38
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=99.93 E-value=3.5e-25 Score=229.40 Aligned_cols=200 Identities=20% Similarity=0.264 Sum_probs=133.3
Q ss_pred CceEEEEEcccCCCchhHHHHHHHHHHHhhhc-CCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCC
Q psy17159 44 KTVTIGLVGKYTKFEDCYASLTRALEHASYHS-NRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGK 122 (326)
Q Consensus 44 ~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~-~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~ 122 (326)
..++|++| |||+|+.++|.+.-..+ +..+.+.++..+..... ....+..+|+|||+||||.
T Consensus 4 ~~~~iL~I-------D~~DSft~nl~~~l~~~~g~~~~v~vv~~d~~~~~-----------~~~~l~~~D~VVIspGPG~ 65 (742)
T TIGR01823 4 QRLHVLFI-------DSYDSFTYNVVRLLEQQTDISVHVTTVHSDTFQDQ-----------LLELLPLFDAIVVGPGPGN 65 (742)
T ss_pred CCceEEEE-------eCCcchHHHHHHHHHHhcCCCcEEEEEeCCCCchh-----------hhhhhcCCCEEEECCCCCC
Confidence 45799999 67778887777766554 33344555554322110 1224668999999999999
Q ss_pred CCCchHHHHHHHHHHc----CCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcce
Q psy17159 123 RGLEGKIAACKWAREN----NKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTM 198 (326)
Q Consensus 123 ~~~~~~~~~i~~~~~~----~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~ 198 (326)
+.......+++++++. ++||||||+|||+|+.++|+++...... +|
T Consensus 66 p~~~~~~~i~~~i~~~~~~~~iPvLGIClG~QlLa~a~GG~v~~~~~~---------------------~h--------- 115 (742)
T TIGR01823 66 PNNAQDMGIISELWELANLDEVPVLGICLGFQSLCLAQGADISRLPTP---------------------KH--------- 115 (742)
T ss_pred ccchhhhHHHHHHHHhcccCCCcEEEEchhhHHHHhhcCCEEEECCCC---------------------Cc---------
Confidence 8655555666666654 4999999999999999999998432211 01
Q ss_pred eecc-eeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEccc
Q psy17159 199 RLGK-HETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFH 277 (326)
Q Consensus 199 ~lg~-~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFH 277 (326)
|. +.+.. .. ..++..+.. ....+.|+|.+++...+.+ .+.+++.+.++.++||++++++|+ ||||||
T Consensus 116 --G~~~~v~~-~~-~~lf~gl~~----~~v~~~Hs~~v~~~~~~~l---~~~~~a~~~~~~~i~ai~h~~~pi-~GVQFH 183 (742)
T TIGR01823 116 --GQVYEMHT-ND-AAIFCGLFS----VKSTRYHSLYANPEGIDTL---LPLCLTEDEEGIILMSAQTKKKPW-FGVQYH 183 (742)
T ss_pred --CeEEEEEE-CC-ccccCCCCC----CceeEEEEEEccCCCCCcc---eEEEEEEcCCCCeEEEEEEcCCce-EEEEeC
Confidence 11 11111 11 334444432 2234557888765433321 256677776665699999999998 899999
Q ss_pred CCCcCCCCCCChHHHHHHHHHHhhhH
Q psy17159 278 PEYLSRPLRPSPPFLGLILAAAGKLD 303 (326)
Q Consensus 278 PE~~~~~~~~~~lf~~Fl~~a~~~~~ 303 (326)
||+..++.+..+||++|++++..+++
T Consensus 184 PE~~~s~~g~~~Lf~nFl~~~~~~~~ 209 (742)
T TIGR01823 184 PESCCSELGSGKLVSNFLKLAFINNV 209 (742)
T ss_pred cccCCCCccHHHHHHHHHHHHHHhhh
Confidence 99988876657899999999987663
No 39
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=99.93 E-value=3.7e-25 Score=193.86 Aligned_cols=146 Identities=25% Similarity=0.332 Sum_probs=102.1
Q ss_pred hhcCCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeecc
Q psy17159 107 DFCKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYM 186 (326)
Q Consensus 107 ~l~~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~ 186 (326)
.+.++||||++||++.+........+..++.+++|+||||+|||+|+.++|+++.......
T Consensus 39 ~~~~~dgvil~gG~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~~~Gg~v~~~~~~~------------------- 99 (184)
T cd01743 39 ELLNPDAIVISPGPGHPEDAGISLEIIRALAGKVPILGVCLGHQAIAEAFGGKVVRAPEPM------------------- 99 (184)
T ss_pred hhcCCCEEEECCCCCCcccchhHHHHHHHHhcCCCEEEECHhHHHHHHHhCCEEEeCCCCC-------------------
Confidence 3578999999999987654444555656667789999999999999999998874321100
Q ss_pred CCCCCCCCCcceeecceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEEC
Q psy17159 187 PEHNPGNMGGTMRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELR 266 (326)
Q Consensus 187 ~~~~~~~~~~~~~lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~ 266 (326)
+ + +++.+... . ++++..+. . .....++|+|.|+.. +. +.+++++|.++++. ++|++++
T Consensus 100 --~-----g-----~~~~v~~~-~-~~~~~~~~-~--~~~~~~~H~~~v~~~--~~--~~~~~~la~~~~~~-v~a~~~~ 157 (184)
T cd01743 100 --H-----G-----KTSEIHHD-G-SGLFKGLP-Q--PFTVGRYHSLVVDPD--PL--PDLLEVTASTEDGV-IMALRHR 157 (184)
T ss_pred --c-----C-----ceeEEEEC-C-CccccCCC-C--CcEEEeCcEEEEecC--CC--CceEEEEEeCCCCe-EEEEEeC
Confidence 0 0 11222222 2 34443332 2 345677788887531 10 22489999999997 9999999
Q ss_pred CCCeEEEEcccCCCcCCCCCCChHHHHHH
Q psy17159 267 DHPYYVAVQFHPEYLSRPLRPSPPFLGLI 295 (326)
Q Consensus 267 ~~~~~~GvQFHPE~~~~~~~~~~lf~~Fl 295 (326)
++|+ ||+|||||+..++. ...||++|+
T Consensus 158 ~~~i-~gvQfHPE~~~~~~-g~~l~~~f~ 184 (184)
T cd01743 158 DLPI-YGVQFHPESILTEY-GLRLLENFL 184 (184)
T ss_pred CCCE-EEEeeCCCcCCCcc-hHHHHHhhC
Confidence 9897 99999999988765 568999995
No 40
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=99.93 E-value=5.8e-25 Score=226.09 Aligned_cols=195 Identities=18% Similarity=0.182 Sum_probs=137.5
Q ss_pred CCCceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCC
Q psy17159 42 LNKTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFG 121 (326)
Q Consensus 42 ~~~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~ 121 (326)
+..+.+|+|| ||+. ++..++.+.|++.|+. +.+...+.. .. .. ...++|+|||+||+|
T Consensus 513 ~~~~~~IlVI-D~gd--s~~~~l~~~L~~~G~~----v~vv~~~~~--~~------------~~-~~~~~DgLILsgGPG 570 (717)
T TIGR01815 513 GGEGRRILLV-DHED--SFVHTLANYLRQTGAS----VTTLRHSHA--EA------------AF-DERRPDLVVLSPGPG 570 (717)
T ss_pred CCCCCEEEEE-ECCC--hhHHHHHHHHHHCCCe----EEEEECCCC--hh------------hh-hhcCCCEEEEcCCCC
Confidence 3456799999 9986 6778888888888763 333322210 00 00 125799999999999
Q ss_pred CCCCchHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcceeec
Q psy17159 122 KRGLEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLG 201 (326)
Q Consensus 122 ~~~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~lg 201 (326)
.+.......+|+++++.++|+||||+|||+|+.++|+++...... . .|
T Consensus 571 sp~d~~~~~~I~~~~~~~iPvLGICLG~QlLa~a~GG~V~~~~~p---------------------~-----------~G 618 (717)
T TIGR01815 571 RPADFDVAGTIDAALARGLPVFGVCLGLQGMVEAFGGALDVLPEP---------------------V-----------HG 618 (717)
T ss_pred CchhcccHHHHHHHHHCCCCEEEECHHHHHHhhhhCCEEEECCCC---------------------e-----------eC
Confidence 876556678888888999999999999999999999988432111 0 12
Q ss_pred -ceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEcccCCC
Q psy17159 202 -KHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPEY 280 (326)
Q Consensus 202 -~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFHPE~ 280 (326)
+..+..... ++++..+ +.. ....++|+|.+.. ..+ ++++.++|+++++. ++|++++..++ +|||||||+
T Consensus 619 ~~~~V~~~~~-~~Lf~~l-p~~--~~v~~~HS~~~~~---~~L-P~~~~vlA~s~d~~-v~Ai~~~~~~i-~GVQFHPEs 688 (717)
T TIGR01815 619 KASRIRVLGP-DALFAGL-PER--LTVGRYHSLFARR---DRL-PAELTVTAESADGL-IMAIEHRRLPL-AAVQFHPES 688 (717)
T ss_pred cceEEEECCC-ChhhhcC-CCC--CEEEEECCCCccc---ccC-CCCeEEEEEeCCCc-EEEEEECCCCE-EEEEeCCee
Confidence 122333332 3444443 332 3455667776543 234 67999999999998 99999999997 999999999
Q ss_pred cCCCCC--CChHHHHHHHHHHh
Q psy17159 281 LSRPLR--PSPPFLGLILAAAG 300 (326)
Q Consensus 281 ~~~~~~--~~~lf~~Fl~~a~~ 300 (326)
..+..+ +..||+||+..+..
T Consensus 689 i~T~sg~~G~~ilkNfl~~~~~ 710 (717)
T TIGR01815 689 IMTLDGGAGLAMIGNVVDRLAA 710 (717)
T ss_pred CCccCchhHHHHHHHHHHHHhh
Confidence 776543 45899999988853
No 41
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=99.93 E-value=5.2e-25 Score=196.61 Aligned_cols=193 Identities=20% Similarity=0.235 Sum_probs=123.8
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCC-C
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKR-G 124 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~-~ 124 (326)
++|+|| ||+. ||..|+.++|+.+|+.+ . .+.. .+.+.++|+||+||+.... .
T Consensus 2 ~~v~ii-d~~~--GN~~sl~~al~~~g~~v----~--vv~~------------------~~~l~~~d~iIlPG~g~~~~~ 54 (210)
T CHL00188 2 MKIGII-DYSM--GNLHSVSRAIQQAGQQP----C--IINS------------------ESELAQVHALVLPGVGSFDLA 54 (210)
T ss_pred cEEEEE-EcCC--ccHHHHHHHHHHcCCcE----E--EEcC------------------HHHhhhCCEEEECCCCchHHH
Confidence 689999 9998 99999999999987632 2 2221 1256789999998843211 1
Q ss_pred -----CchHHHHHHHHHHcCCCEEEEehhHHHHHHHhCc---ccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCc
Q psy17159 125 -----LEGKIAACKWARENNKPFLGICLGLQAAVIEYGR---SVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGG 196 (326)
Q Consensus 125 -----~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~---~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~ 196 (326)
..++...|+.+++.++|+||||+|||+|+...++ ..+++.++.+.++... ...+ +.+
T Consensus 55 ~~~l~~~gl~~~i~~~~~~~~pvlGIClG~Qll~~~~~~~~~~glg~~~G~v~~~~~~---~~~~-~p~----------- 119 (210)
T CHL00188 55 MKKLEKKGLITPIKKWIAEGNPFIGICLGLHLLFETSEEGKEEGLGIYKGQVKRLKHS---PVKV-IPH----------- 119 (210)
T ss_pred HHHHHHCCHHHHHHHHHHcCCCEEEECHHHHHHhhccccCCcCCccceeEEEEECCCC---CCCc-cCc-----------
Confidence 1256677888888899999999999999987643 4678888887776421 1111 112
Q ss_pred ceeecceeEEEecCC-----CchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcC-CCCeEEEEEECCCCe
Q psy17159 197 TMRLGKHETHFKPEH-----KSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDE-KEVRMEIAELRDHPY 270 (326)
Q Consensus 197 ~~~lg~~~~~~~~~~-----~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~-dg~~veaie~~~~~~ 270 (326)
.||..+.+.... .+++.++. . ....+++|+|.+.+.. +..+..++... ++ ++++++.. ++
T Consensus 120 ---~Gw~~v~~~~~~~~~~~~~lf~~l~-~--~~~v~~~HS~~v~p~~-----~~~l~~t~~~~~~~-~v~a~~~~--~i 185 (210)
T CHL00188 120 ---MGWNRLECQNSECQNSEWVNWKAWP-L--NPWAYFVHSYGVMPKS-----QACATTTTFYGKQQ-MVAAIEYD--NI 185 (210)
T ss_pred ---cCCccceecCCcccccCChhhcCCC-C--CCEEEEeCccEecCCC-----CceEEEEEecCCcc-eEEEEecC--CE
Confidence 356655554310 12444332 2 2345566888775321 11222222232 44 48999863 54
Q ss_pred EEEEcccCCCcCCCCCCChHHHHHHHH
Q psy17159 271 YVAVQFHPEYLSRPLRPSPPFLGLILA 297 (326)
Q Consensus 271 ~~GvQFHPE~~~~~~~~~~lf~~Fl~~ 297 (326)
+|||||||++ ++. ...+++||+..
T Consensus 186 -~GvQFHPE~s-~~~-G~~il~nfl~~ 209 (210)
T CHL00188 186 -FAMQFHPEKS-GEF-GLWLLREFMKK 209 (210)
T ss_pred -EEEecCCccc-cHh-HHHHHHHHHhh
Confidence 9999999998 443 35899999864
No 42
>PRK13566 anthranilate synthase; Provisional
Probab=99.92 E-value=1.4e-24 Score=223.57 Aligned_cols=195 Identities=20% Similarity=0.204 Sum_probs=135.4
Q ss_pred CCCceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCC
Q psy17159 42 LNKTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFG 121 (326)
Q Consensus 42 ~~~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~ 121 (326)
+..+++|+|| ||+. ....++.+.|+..|+. +.++..+... . .. ...++|+|||+||+|
T Consensus 523 ~~~g~~IlvI-D~~d--sf~~~l~~~Lr~~G~~----v~vv~~~~~~----------~----~~-~~~~~DgVVLsgGpg 580 (720)
T PRK13566 523 VGEGKRVLLV-DHED--SFVHTLANYFRQTGAE----VTTVRYGFAE----------E----ML-DRVNPDLVVLSPGPG 580 (720)
T ss_pred CCCCCEEEEE-ECCC--chHHHHHHHHHHCCCE----EEEEECCCCh----------h----Hh-hhcCCCEEEECCCCC
Confidence 4567899999 9885 4566778888877763 3333333110 0 01 225789999999999
Q ss_pred CCCCchHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcceeec
Q psy17159 122 KRGLEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLG 201 (326)
Q Consensus 122 ~~~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~lg 201 (326)
.+...+...+|+.+++.++||||||+|||+|+.++|+++..+... .| | +
T Consensus 581 sp~d~~~~~lI~~a~~~~iPILGIClG~QlLa~alGG~V~~~~~~---------------------~~-----G-----~ 629 (720)
T PRK13566 581 RPSDFDCKATIDAALARNLPIFGVCLGLQAIVEAFGGELGQLAYP---------------------MH-----G-----K 629 (720)
T ss_pred ChhhCCcHHHHHHHHHCCCcEEEEehhHHHHHHHcCCEEEECCCC---------------------cc-----C-----C
Confidence 876556788999999999999999999999999999998432211 01 0 1
Q ss_pred ceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEcccCCCc
Q psy17159 202 KHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPEYL 281 (326)
Q Consensus 202 ~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFHPE~~ 281 (326)
...+.+.. ++.++..+... ....++|++.+.. ..+ +++++++|.+++|. |+++++++.|+ +|||||||+.
T Consensus 630 ~~~V~v~~--~~~Lf~~lp~~--~~v~~~Hs~~v~~---~~L-p~~~~vlA~s~dg~-V~ai~~~~~pi-~GVQFHPE~i 699 (720)
T PRK13566 630 PSRIRVRG--PGRLFSGLPEE--FTVGRYHSLFADP---ETL-PDELLVTAETEDGV-IMAIEHKTLPV-AAVQFHPESI 699 (720)
T ss_pred ceEEEECC--CCchhhcCCCC--CEEEEecceeEee---ccC-CCceEEEEEeCCCc-EEEEEECCCCE-EEEeccCeeC
Confidence 12233333 33333333332 3445566665542 234 67999999999998 99999998887 9999999998
Q ss_pred CCCC--CCChHHHHHHHHHH
Q psy17159 282 SRPL--RPSPPFLGLILAAA 299 (326)
Q Consensus 282 ~~~~--~~~~lf~~Fl~~a~ 299 (326)
.+.. .+.+||+||++.+.
T Consensus 700 ~t~~~~~G~~ii~nfl~~~~ 719 (720)
T PRK13566 700 MTLGGDVGLRIIENVVRLLA 719 (720)
T ss_pred CcCCchhHHHHHHHHHHHhh
Confidence 7632 24689999998874
No 43
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.92 E-value=1.1e-24 Score=194.63 Aligned_cols=189 Identities=17% Similarity=0.201 Sum_probs=127.5
Q ss_pred EEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCC---
Q psy17159 48 IGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRG--- 124 (326)
Q Consensus 48 I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~--- 124 (326)
|+|| |||. ||..|+.++|+.++.. +.++.. .+.+.++|+||+||+.....
T Consensus 2 i~ii-dyg~--gNl~s~~~al~~~~~~------~~~~~~------------------~~~l~~~d~iIlPG~g~~~~~~~ 54 (210)
T PRK14004 2 IAIL-DYGM--GNIHSCLKAVSLYTKD------FVFTSD------------------PETIENSKALILPGDGHFDKAME 54 (210)
T ss_pred EEEE-ECCC--chHHHHHHHHHHcCCe------EEEECC------------------HHHhccCCEEEECCCCchHHHHH
Confidence 8999 9999 9999999999998863 233331 23678999999999742211
Q ss_pred ---CchHHHHHHHHHHcCCCEEEEehhHHHHHHHhC----------cccccccCCcccccCCCCCCccCCeeeccCCCCC
Q psy17159 125 ---LEGKIAACKWARENNKPFLGICLGLQAAVIEYG----------RSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNP 191 (326)
Q Consensus 125 ---~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g----------~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~ 191 (326)
..++...|+++.+.++|+||||+|||+|+...+ .+.||+.++.+.++... ..+ +.+
T Consensus 55 ~l~~~gl~~~i~~~~~~~~pilGiC~G~Q~l~~~~~e~~~~~~~~~~~Glg~~~~~v~~~~~~----~~~-~ph------ 123 (210)
T PRK14004 55 NLNSTGLRSTIDKHVESGKPLFGICIGFQILFESSEETNQGTKKEQIEGLGYIKGKIKKFEGK----DFK-VPH------ 123 (210)
T ss_pred HHHHcCcHHHHHHHHHcCCCEEEECHhHHHHHHhcccccCCCcCcccCCcceeEEEEEEcCCC----CCc-CCc------
Confidence 136778888888899999999999999998764 34678888887776311 111 112
Q ss_pred CCCCcceeecceeEEEe--cCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCC-CCeEEEEEECCC
Q psy17159 192 GNMGGTMRLGKHETHFK--PEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEK-EVRMEIAELRDH 268 (326)
Q Consensus 192 ~~~~~~~~lg~~~~~~~--~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~d-g~~veaie~~~~ 268 (326)
.||..+... .. ++++..+. . ....+++|+|.+.+ ...+.+++.++. +..+.++. .+.
T Consensus 124 --------~Gw~~v~~~~~~~-~~lf~~l~-~--~~~v~~~HS~~~~~-------~~~l~~sa~~~~~g~~~~a~~-~~~ 183 (210)
T PRK14004 124 --------IGWNRLQIRRKDK-SKLLKGIG-D--QSFFYFIHSYRPTG-------AEGNAITGLCDYYQEKFPAVV-EKE 183 (210)
T ss_pred --------cCcccceeccCCC-CccccCCC-C--CCEEEEeceeecCC-------CCcceEEEeeeECCEEEEEEE-ecC
Confidence 366666553 12 34444443 2 24567788885421 234566676665 55344454 455
Q ss_pred CeEEEEcccCCCcCCCCCCChHHHHHHHH
Q psy17159 269 PYYVAVQFHPEYLSRPLRPSPPFLGLILA 297 (326)
Q Consensus 269 ~~~~GvQFHPE~~~~~~~~~~lf~~Fl~~ 297 (326)
++ +|+|||||++.+ .+..+++||++.
T Consensus 184 ~i-~GvQFHPE~s~~--~G~~iL~nfl~~ 209 (210)
T PRK14004 184 NI-FGTQFHPEKSHT--HGLKLLENFIEF 209 (210)
T ss_pred CE-EEEeCCcccCch--hHHHHHHHHHhh
Confidence 65 999999999984 346899999863
No 44
>KOG0026|consensus
Probab=99.92 E-value=5.6e-25 Score=183.29 Aligned_cols=197 Identities=22% Similarity=0.221 Sum_probs=139.9
Q ss_pred EEEEEcccCCCchhHHHHHHHHHHHh-hhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCCC
Q psy17159 47 TIGLVGKYTKFEDCYASLTRALEHAS-YHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRGL 125 (326)
Q Consensus 47 ~I~iigdyg~~~~~~~Si~~aL~~~g-~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~~ 125 (326)
.|.+| |||+|+.+++-+.- .+.+.++.+++.+..++++. .-.++++|+|++|||.+..
T Consensus 20 piv~I-------DNYDSFT~Nv~qYL~~e~g~~~~VyRNDeiTV~El--------------~~~NP~~LliSPGPG~P~D 78 (223)
T KOG0026|consen 20 PIIVI-------DNYDSFTYNLCQYLMGELGCHFEVYRNDELTVEEL--------------KRKNPRGLLISPGPGTPQD 78 (223)
T ss_pred CEEEE-------ecccchhHHHHHHhhhccCccEEEEecCcccHHHH--------------hhcCCCeEEecCCCCCCcc
Confidence 58888 79999999998876 67777888888886543321 1248999999999999986
Q ss_pred chHH-HHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcceeeccee
Q psy17159 126 EGKI-AACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHE 204 (326)
Q Consensus 126 ~~~~-~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~lg~~~ 204 (326)
.++. +.|+++ ...+|+||||.|.|.|..+||+++..-. | - +. | |...
T Consensus 79 sGIs~~~i~~f-~~~iP~fGvCMGlQCi~e~fGGkv~~a~------~---------~-i~----H-----------GK~S 126 (223)
T KOG0026|consen 79 SGISLQTVLEL-GPLVPLFGVCMGLQCIGEAFGGKIVRSP------F---------G-VM----H-----------GKSS 126 (223)
T ss_pred ccchHHHHHHh-CCCCceeeeehhhhhhhhhhCcEEeccC------c---------c-ee----e-----------cccc
Confidence 6643 455555 5689999999999999999999883211 0 0 00 0 1111
Q ss_pred EEEecC--CCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEcccCCCcC
Q psy17159 205 THFKPE--HKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPEYLS 282 (326)
Q Consensus 205 ~~~~~~--~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFHPE~~~ 282 (326)
.+-.+. .-.++..+. + +...+|| |++....+.++ .+.++|+||.++|. |++.+|+.+..+-|||||||+..
T Consensus 127 ~i~~D~~~~~G~f~g~~-q-~~~V~RY-HSLa~~~sSlP---~d~L~VTawTEnG~-iMgaRHkKY~~ieGVQfHPESIl 199 (223)
T KOG0026|consen 127 MVHYDEKGEEGLFSGLS-N-PFIVGRY-HSLVIEKDSFP---SDELEVTAWTEDGL-VMAARHRKYKHIQGVQFHPESII 199 (223)
T ss_pred ccccCCccccccccCCC-C-CeEEEee-eeeeeecccCC---ccceeeeEeccCcE-EEeeeccccccccceeecchhhh
Confidence 111110 012333332 3 2677777 67776544443 47899999999998 99999999886699999999999
Q ss_pred CCCCCChHHHHHHHHHHhhhHH
Q psy17159 283 RPLRPSPPFLGLILAAAGKLDA 304 (326)
Q Consensus 283 ~~~~~~~lf~~Fl~~a~~~~~~ 304 (326)
+..+ +-+.+||++...+.+++
T Consensus 200 teeG-k~~irNflni~~~tWeE 220 (223)
T KOG0026|consen 200 TTEG-KTIVRNFIKIVEKKWSE 220 (223)
T ss_pred hhhh-HHHHHHHHHhcccchhc
Confidence 8764 68999999988776654
No 45
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.92 E-value=1.3e-24 Score=217.41 Aligned_cols=185 Identities=21% Similarity=0.260 Sum_probs=127.0
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhc--CCCEEEECCCCCCC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFC--KVDGIIVPGGFGKR 123 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~--~~dglilpGG~~~~ 123 (326)
.+|+|| |||+ .+-.++.++|+.+|... .+...+. ..+.++ ++||||||||+...
T Consensus 4 ~~i~vl-D~Gs--q~~~li~r~lrelg~~~----~v~p~~~-----------------~~~~l~~~~~dgIIlsGGp~sv 59 (511)
T PRK00074 4 DKILIL-DFGS--QYTQLIARRVRELGVYS----EIVPYDI-----------------SAEEIRAFNPKGIILSGGPASV 59 (511)
T ss_pred CEEEEE-ECCC--CcHHHHHHHHHHCCCeE----EEEECCC-----------------CHHHHhccCCCEEEECCCCccc
Confidence 479999 9998 66778999999988632 2332221 012444 45999999998754
Q ss_pred CCchHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcceeecce
Q psy17159 124 GLEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKH 203 (326)
Q Consensus 124 ~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~lg~~ 203 (326)
.........+.+++.++|+||||+|||+|+.++|+++..... ...|+.
T Consensus 60 ~~~~~p~~~~~i~~~~~PvLGIC~G~QlLa~~lGG~V~~~~~--------------------------------~e~G~~ 107 (511)
T PRK00074 60 YEEGAPRADPEIFELGVPVLGICYGMQLMAHQLGGKVERAGK--------------------------------REYGRA 107 (511)
T ss_pred ccCCCccccHHHHhCCCCEEEECHHHHHHHHHhCCeEEecCC--------------------------------cccceE
Confidence 322222334556678999999999999999999998732110 013445
Q ss_pred eEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEcccCCCcCC
Q psy17159 204 ETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPEYLSR 283 (326)
Q Consensus 204 ~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFHPE~~~~ 283 (326)
.+.+.. ++.+++.++....++. .|++.| ..+ +++++++|+++++. ++++++.+.++ ||+|||||++.+
T Consensus 108 ~i~i~~--~~~Lf~~l~~~~~v~~--~H~d~V-----~~l-p~g~~vlA~s~~~~-v~ai~~~~~~i-~GvQFHPE~~~t 175 (511)
T PRK00074 108 ELEVDN--DSPLFKGLPEEQDVWM--SHGDKV-----TEL-PEGFKVIASTENCP-IAAIANEERKF-YGVQFHPEVTHT 175 (511)
T ss_pred EEEEcC--CChhhhcCCCceEEEE--ECCeEE-----Eec-CCCcEEEEEeCCCC-EEEEEeCCCCE-EEEeCCCCcCCc
Confidence 555544 4434433333223444 455543 455 78999999999988 99999988886 999999999988
Q ss_pred CCCCChHHHHHHHHHH
Q psy17159 284 PLRPSPPFLGLILAAA 299 (326)
Q Consensus 284 ~~~~~~lf~~Fl~~a~ 299 (326)
+. +..+|++|+...+
T Consensus 176 ~~-G~~il~nFl~~i~ 190 (511)
T PRK00074 176 PQ-GKKLLENFVFDIC 190 (511)
T ss_pred hh-HHHHHHHHHHHhc
Confidence 65 4589999995544
No 46
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.92 E-value=2.7e-24 Score=191.07 Aligned_cols=187 Identities=22% Similarity=0.219 Sum_probs=118.2
Q ss_pred EEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCCC--
Q psy17159 48 IGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRGL-- 125 (326)
Q Consensus 48 I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~~-- 125 (326)
|+|| |||. +|..|+.++|+++|.. +.++.. .+++..+|+|||||+......
T Consensus 2 i~ii-d~g~--~n~~~v~~~l~~~g~~------~~~~~~------------------~~~l~~~d~lilPG~g~~~~~~~ 54 (201)
T PRK13152 2 IALI-DYKA--GNLNSVAKAFEKIGAI------NFIAKN------------------PKDLQKADKLLLPGVGSFKEAMK 54 (201)
T ss_pred EEEE-ECCC--CcHHHHHHHHHHCCCe------EEEECC------------------HHHHcCCCEEEECCCCchHHHHH
Confidence 8999 9999 9999999999998752 223331 125778999999886432211
Q ss_pred ----chHHHHHHH-HHHcCCCEEEEehhHHHHHHH--hCc--ccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCc
Q psy17159 126 ----EGKIAACKW-ARENNKPFLGICLGLQAAVIE--YGR--SVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGG 196 (326)
Q Consensus 126 ----~~~~~~i~~-~~~~~~PvLGIClG~QlL~~~--~g~--~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~ 196 (326)
.++...|++ +++.++|+||||+|||+|+.. .|+ +.||+.++.+.++... ...+ +
T Consensus 55 ~l~~~~~~~~l~~~~~~~~~pvlGiC~G~Q~l~~~~~~~~~~~~lg~~~g~v~~~~~~---~~~~-~------------- 117 (201)
T PRK13152 55 NLKELGFIEALKEQVLVQKKPILGICLGMQLFLERGYEGGVCEGLGFIEGEVVKFEED---LNLK-I------------- 117 (201)
T ss_pred HHHHcCcHHHHHHHHHhCCCcEEEECHhHHHHhhcccccCCcCCcccccEEEEECCCC---CCCc-C-------------
Confidence 133445544 457899999999999999986 232 2345455544433210 0000 0
Q ss_pred ceeecceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCC-eEEEEEECCCCeEEEEc
Q psy17159 197 TMRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEV-RMEIAELRDHPYYVAVQ 275 (326)
Q Consensus 197 ~~~lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~-~veaie~~~~~~~~GvQ 275 (326)
...|++.+.+.. ++.+.+.++.. ....+.|+|.+.. . ...++++++++. ++++++ +.++ +|||
T Consensus 118 -~~~g~~~v~~~~--~~~l~~~l~~~--~~~~~vHS~~v~~-----~---~~~v~a~~~~g~~~~~a~~--~~~i-~GvQ 181 (201)
T PRK13152 118 -PHMGWNELEILK--QSPLYQGIPEK--SDFYFVHSFYVKC-----K---DEFVSAKAQYGHKFVASLQ--KDNI-FATQ 181 (201)
T ss_pred -CccCeEEEEECC--CChhhhCCCCC--CeEEEEcccEeec-----C---CCcEEEEECCCCEEEEEEe--cCCE-EEEe
Confidence 123677776654 55555544432 3456667877642 1 246778887764 355665 4454 9999
Q ss_pred ccCCCcCCCCCCChHHHHHHH
Q psy17159 276 FHPEYLSRPLRPSPPFLGLIL 296 (326)
Q Consensus 276 FHPE~~~~~~~~~~lf~~Fl~ 296 (326)
||||++.. ....||++|++
T Consensus 182 FHPE~~~~--~g~~ll~~Fl~ 200 (201)
T PRK13152 182 FHPEKSQN--LGLKLLENFAR 200 (201)
T ss_pred CCCeecCh--hhHHHHHHHHh
Confidence 99999853 34589999985
No 47
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.92 E-value=1.4e-24 Score=218.39 Aligned_cols=187 Identities=18% Similarity=0.242 Sum_probs=126.8
Q ss_pred EEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCCC
Q psy17159 47 TIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKRG 124 (326)
Q Consensus 47 ~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~~ 124 (326)
+|.|| |||+|+.++|.+.-.+.+.+ .+..+.+.+.. . +.+ ..+|+|||+|||+.+.
T Consensus 1 ~il~i-------dn~dsft~nl~~~l~~~g~~-~v~~~~~~~~~-------~-------~~~~~~~~d~vIlsgGP~~p~ 58 (534)
T PRK14607 1 MIILI-------DNYDSFTYNIYQYIGELGPE-EIEVVRNDEIT-------I-------EEIEALNPSHIVISPGPGRPE 58 (534)
T ss_pred CEEEE-------ECchhHHHHHHHHHHHcCCC-eEEEECCCCCC-------H-------HHHHhcCCCEEEECCCCCChh
Confidence 37888 89999999999888777653 22333221110 1 122 3689999999999864
Q ss_pred Cc-hHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcceeecce
Q psy17159 125 LE-GKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKH 203 (326)
Q Consensus 125 ~~-~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~lg~~ 203 (326)
.. ...++++. +..++|+||||+|||+|+.++|+++....... . |..
T Consensus 59 ~~~~~~~li~~-~~~~~PvLGIClG~QlLa~a~Gg~V~~~~~~~------~--------------------------G~~ 105 (534)
T PRK14607 59 EAGISVEVIRH-FSGKVPILGVCLGHQAIGYAFGGKIVHAKRIL------H--------------------------GKT 105 (534)
T ss_pred hCCccHHHHHH-hhcCCCEEEEcHHHHHHHHHcCCeEecCCccc------c--------------------------CCc
Confidence 32 24456665 46789999999999999999999884432111 0 111
Q ss_pred eEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEcccCCCcCC
Q psy17159 204 ETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPEYLSR 283 (326)
Q Consensus 204 ~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFHPE~~~~ 283 (326)
..+.... .+++..+. . ....+++|++.+... .+ +++++++|++++|. +++++++++|+ ||||||||+..+
T Consensus 106 ~~v~~~~-~~lf~~~~-~--~~~v~~~Hs~~v~~~---~l-p~~~~vlA~s~d~~-i~a~~~~~~pi-~GvQFHPE~~~t 175 (534)
T PRK14607 106 SPIDHNG-KGLFRGIP-N--PTVATRYHSLVVEEA---SL-PECLEVTAKSDDGE-IMGIRHKEHPI-FGVQFHPESILT 175 (534)
T ss_pred eeEEECC-CcchhcCC-C--CcEEeeccchheecc---cC-CCCeEEEEEcCCCC-EEEEEECCCCE-EEEEeCCCCCCC
Confidence 1111121 33333332 2 133456677776432 34 68999999999999 99999999997 999999999876
Q ss_pred CCCCChHHHHHHHHHH
Q psy17159 284 PLRPSPPFLGLILAAA 299 (326)
Q Consensus 284 ~~~~~~lf~~Fl~~a~ 299 (326)
+. ...+|.+|++.+.
T Consensus 176 ~~-g~~i~~nFl~~~~ 190 (534)
T PRK14607 176 EE-GKRILKNFLNYQR 190 (534)
T ss_pred hh-HHHHHHHHHHHhh
Confidence 54 4589999999774
No 48
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.92 E-value=3e-24 Score=215.00 Aligned_cols=190 Identities=18% Similarity=0.168 Sum_probs=126.0
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhc--CCCEEEECCCCCCC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFC--KVDGIIVPGGFGKR 123 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~--~~dglilpGG~~~~ 123 (326)
++|.|| |||+|+.++|.+.-..++.++.++..+... . ...+.+. ++|+|||+||||.+
T Consensus 2 ~~iLiI-------Dn~dsft~nl~~~lr~~g~~v~V~~~~~~~--~-----------~~~~~l~~~~~~~IIlSpGPg~p 61 (531)
T PRK09522 2 ADILLL-------DNIDSFTYNLADQLRSNGHNVVIYRNHIPA--Q-----------TLIERLATMSNPVLMLSPGPGVP 61 (531)
T ss_pred CeEEEE-------eCCChHHHHHHHHHHHCCCCEEEEECCCCC--c-----------cCHHHHHhcCcCEEEEcCCCCCh
Confidence 589999 678888888888877776666665533100 0 0122333 57899999999998
Q ss_pred CCchHH-HHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcceeecc
Q psy17159 124 GLEGKI-AACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGK 202 (326)
Q Consensus 124 ~~~~~~-~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~lg~ 202 (326)
...+.. +++++ +..++||||||+|||+|+.++|+++...... ..|.
T Consensus 62 ~d~~~~~~i~~~-~~~~iPILGIClG~QlLa~a~GG~V~~~~~~--------------------------------~~G~ 108 (531)
T PRK09522 62 SEAGCMPELLTR-LRGKLPIIGICLGHQAIVEAYGGYVGQAGEI--------------------------------LHGK 108 (531)
T ss_pred hhCCCCHHHHHH-HhcCCCEEEEcHHHHHHHHhcCCEEEeCCce--------------------------------eeee
Confidence 644333 33333 3568999999999999999999998431100 0111
Q ss_pred eeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEcccCCCcC
Q psy17159 203 HETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPEYLS 282 (326)
Q Consensus 203 ~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFHPE~~~ 282 (326)
...+.... .+++..+. .. ....++|++.+ ..+ +++++++|+ .++. ++++++++.++ ||||||||+..
T Consensus 109 ~~~i~~~~-~~lf~~~~-~~--~~v~~~Hs~~v-----~~l-P~~l~vlA~-sd~~-v~ai~~~~~~i-~GVQFHPEs~~ 175 (531)
T PRK09522 109 ASSIEHDG-QAMFAGLT-NP--LPVARYHSLVG-----SNI-PAGLTINAH-FNGM-VMAVRHDADRV-CGFQFHPESIL 175 (531)
T ss_pred EEEEeecC-CccccCCC-CC--cEEEEehheec-----ccC-CCCcEEEEe-cCCC-EEEEEECCCCE-EEEEecCcccc
Confidence 11111121 23333332 22 22334456554 344 789999997 4777 99999998887 99999999999
Q ss_pred CCCCCChHHHHHHHHHHhhh
Q psy17159 283 RPLRPSPPFLGLILAAAGKL 302 (326)
Q Consensus 283 ~~~~~~~lf~~Fl~~a~~~~ 302 (326)
|+.+ ..+|+||++.+..++
T Consensus 176 T~~G-~~il~NFl~~~~~~~ 194 (531)
T PRK09522 176 TTQG-ARLLEQTLAWAQQKL 194 (531)
T ss_pred Ccch-HHHHHHHHHHHhhcC
Confidence 9865 589999999886433
No 49
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=99.91 E-value=1.7e-24 Score=194.48 Aligned_cols=170 Identities=24% Similarity=0.306 Sum_probs=105.0
Q ss_pred HHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCC-CCC----------CC-----
Q psy17159 62 ASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGF-GKR----------GL----- 125 (326)
Q Consensus 62 ~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~-~~~----------~~----- 125 (326)
.+.+++++.+|+. ++.++... +.. .+.+.++.+||||||||. +.. ..
T Consensus 27 ~~Yv~~i~~aG~~------pv~ip~~~--------~~~---~~~~~l~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~ 89 (217)
T PF07722_consen 27 ASYVKAIEAAGGR------PVPIPYDA--------DDE---ELDELLDRIDGLLLPGGGSDIDPALYGEEPSPESGYIDP 89 (217)
T ss_dssp HHHHHHHHHTT-E------EEEE-SS----------HH---HHHHHHHCSSEEEE---SS-T-GGGGT---BTTSHHHHH
T ss_pred HHHHHHHHHcCCE------EEEEccCC--------CHH---HHHHHHhhcCEEEEcCCccchhHhhcCCcccccCCCcCH
Confidence 4678889989873 22333210 111 244577899999999997 331 00
Q ss_pred ---chHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcceeecc
Q psy17159 126 ---EGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGK 202 (326)
Q Consensus 126 ---~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~lg~ 202 (326)
.-...+++.+.++++|+||||+|||+|++++|+++.......... ..+. .+.. ....
T Consensus 90 ~rd~~e~~l~~~a~~~~~PilGICrG~Q~lnv~~GGtl~q~~~~~~~~------------~~~~-~~~~-------~~~~ 149 (217)
T PF07722_consen 90 ERDIFELALIRNALGRGKPILGICRGMQLLNVAFGGTLYQDIPDQPGF------------PDHR-QHPQ-------DFPS 149 (217)
T ss_dssp HHHHHHHHHHHHHCCTT--EEEETHHHHHHHHHCCSSEESCCCCSS-E------------EECE-E-S--------TS--
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEcHHHHHHHHHhCCCceeecccCcCc------------cccc-cccc-------cccc
Confidence 124566788888899999999999999999999884322210000 0000 0000 1234
Q ss_pred eeEEEecCCCchHHhhhC-CCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCC-eEEEEcccCC
Q psy17159 203 HETHFKPEHKSKLKLLYG-NKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHP-YYVAVQFHPE 279 (326)
Q Consensus 203 ~~~~~~~~~~s~l~~~~~-~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~-~~~GvQFHPE 279 (326)
+.+.+.. +|.+.++++ ....+++.|++ + +..+ +++|+++|+++||. +|||+..+++ |++|||||||
T Consensus 150 h~v~i~~--~s~l~~~~~~~~~~vns~Hhq--~-----v~~l-~~~l~v~A~s~Dg~-iEaie~~~~~~~~~GvQwHPE 217 (217)
T PF07722_consen 150 HPVRIVP--GSLLAKILGSEEIEVNSFHHQ--A-----VKPL-GEGLRVTARSPDGV-IEAIESPEHKYPILGVQWHPE 217 (217)
T ss_dssp EEEEEET--TSTCCCTSHHCTEEEEEEECE--E-----ECCH-HCCEEEEEEECTSS-EEEEEECCESS-EEEESS-CC
T ss_pred ccceecc--CchHHHHhCcCcceeecchhh--h-----hhcc-CCCceEEEEecCCc-EEEEEEcCCCCCEEEEEeCCC
Confidence 5566654 899999997 33357777755 3 3445 78999999999998 9999999976 6799999999
No 50
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.91 E-value=4.7e-24 Score=189.21 Aligned_cols=187 Identities=21% Similarity=0.154 Sum_probs=119.7
Q ss_pred EEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCC----
Q psy17159 48 IGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKR---- 123 (326)
Q Consensus 48 I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~---- 123 (326)
|+|| |||+ +|+.|+.++|+..|..+ . ++.. .+.+.++|+||+|||....
T Consensus 2 i~vi-d~g~--gn~~~~~~~l~~~g~~v----~--~~~~------------------~~~l~~~d~lilpG~g~~~~~~~ 54 (199)
T PRK13181 2 IAII-DYGA--GNLRSVANALKRLGVEA----V--VSSD------------------PEEIAGADKVILPGVGAFGQAMR 54 (199)
T ss_pred EEEE-eCCC--ChHHHHHHHHHHCCCcE----E--EEcC------------------hHHhccCCEEEECCCCCHHHHHH
Confidence 8999 9999 99999999999887632 2 2221 1257789999999863311
Q ss_pred --CCchHHHHHHHHHHcCCCEEEEehhHHHHHHHhC---cccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcce
Q psy17159 124 --GLEGKIAACKWARENNKPFLGICLGLQAAVIEYG---RSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTM 198 (326)
Q Consensus 124 --~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g---~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~ 198 (326)
...+..+.|+.+++.++|+||||+|||+|+.+.. .+.+++.++.+.+.... .+...
T Consensus 55 ~l~~~~~~~~i~~~~~~~~PvlGiC~G~Qll~~~~~~~~~~glg~l~~~v~~~~~~-------------------~~~~~ 115 (199)
T PRK13181 55 SLRESGLDEALKEHVEKKQPVLGICLGMQLLFESSEEGNVKGLGLIPGDVKRFRSE-------------------PLKVP 115 (199)
T ss_pred HHHHCChHHHHHHHHHCCCCEEEECHhHHHhhhhcccCCcCCcceEEEEEEEcCCC-------------------CCCCC
Confidence 1124567788888899999999999999998742 23455555544433210 00012
Q ss_pred eecceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCC-eEEEEEECCCCeEEEEccc
Q psy17159 199 RLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEV-RMEIAELRDHPYYVAVQFH 277 (326)
Q Consensus 199 ~lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~-~veaie~~~~~~~~GvQFH 277 (326)
.+|++.+.... ++.+.+.++.. ...+++|+|.+.+ .+.+.++|+++++. ++++++ +.++ ||||||
T Consensus 116 ~~G~~~v~~~~--~~~lf~~l~~~--~~~~~~Hs~~v~~-------~~~~~~lA~s~~~~~~~~~~~--~~~i-~GvQFH 181 (199)
T PRK13181 116 QMGWNSVKPLK--ESPLFKGIEEG--SYFYFVHSYYVPC-------EDPEDVLATTEYGVPFCSAVA--KDNI-YAVQFH 181 (199)
T ss_pred ccCccccccCC--CChhHcCCCCC--CEEEEeCeeEecc-------CCcccEEEEEcCCCEEEEEEE--CCCE-EEEECC
Confidence 34666665543 44444444432 2345567777642 12346789887655 233443 4555 999999
Q ss_pred CCCcCCCCCCChHHHHHHH
Q psy17159 278 PEYLSRPLRPSPPFLGLIL 296 (326)
Q Consensus 278 PE~~~~~~~~~~lf~~Fl~ 296 (326)
||... + ....+|++|++
T Consensus 182 PE~~~-~-~g~~ll~nfl~ 198 (199)
T PRK13181 182 PEKSG-K-AGLKLLKNFAE 198 (199)
T ss_pred CccCC-H-HHHHHHHHHHh
Confidence 99874 2 34589999975
No 51
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.91 E-value=1.4e-23 Score=187.02 Aligned_cols=193 Identities=21% Similarity=0.205 Sum_probs=125.5
Q ss_pred EEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCC--
Q psy17159 47 TIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRG-- 124 (326)
Q Consensus 47 ~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~-- 124 (326)
+|+|| |||. +|..++.++|++.|+.+ .+ +.. ..+++++|+||||||.....
T Consensus 1 ~i~~~-d~~~--~~~~~i~~~l~~~G~~v----~~--~~~------------------~~~l~~~d~iiipG~~~~~~~~ 53 (205)
T PRK13141 1 MIAII-DYGM--GNLRSVEKALERLGAEA----VI--TSD------------------PEEILAADGVILPGVGAFPDAM 53 (205)
T ss_pred CEEEE-EcCC--chHHHHHHHHHHCCCeE----EE--ECC------------------HHHhccCCEEEECCCCchHHHH
Confidence 58999 9998 99999999999988642 22 221 12678899999998633211
Q ss_pred ----CchHHHHHHHHHHcCCCEEEEehhHHHHHHHh----CcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCc
Q psy17159 125 ----LEGKIAACKWARENNKPFLGICLGLQAAVIEY----GRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGG 196 (326)
Q Consensus 125 ----~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~----g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~ 196 (326)
..+..+.|+.+.+.++|+||||+|+|+|+... +...+|+.++.+.+.... .. .+
T Consensus 54 ~~~~~~~~~~~i~~~~~~~~pvlGIC~G~Qll~~~~~~~~~~~~lg~l~g~v~~~~~~---~~---------------~~ 115 (205)
T PRK13141 54 ANLRERGLDEVIKEAVASGKPLLGICLGMQLLFESSEEFGETEGLGLLPGRVRRFPPE---EG---------------LK 115 (205)
T ss_pred HHHHHcChHHHHHHHHHCCCcEEEECHHHHHhhhccccCCCCCccceEEEEEEEcCCC---CC---------------Cc
Confidence 12467788888889999999999999999863 223445544544332110 00 00
Q ss_pred ceeecceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEcc
Q psy17159 197 TMRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQF 276 (326)
Q Consensus 197 ~~~lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQF 276 (326)
....|++.+.+.. ++.+.+.+... ....+.|++.+.+ ++++.++|+++++..++++.. +.++ |||||
T Consensus 116 ~~~~g~~~i~~~~--~~~l~~~l~~~--~~v~~~Hs~~v~~-------~~~~~v~a~~~~~~~~~a~~~-~~~i-~GvQf 182 (205)
T PRK13141 116 VPHMGWNQLELKK--ESPLLKGIPDG--AYVYFVHSYYADP-------CDEEYVAATTDYGVEFPAAVG-KDNV-FGAQF 182 (205)
T ss_pred ccEecCccceeCC--CChhhhCCCCC--CEEEEECeeEecc-------CCcCeEEEEEeCCcEEEEEEe-cCCE-EEEeC
Confidence 1234566655544 44444444332 2233456776632 457889998887743777765 4454 99999
Q ss_pred cCCCcCCCCCCChHHHHHHHHHH
Q psy17159 277 HPEYLSRPLRPSPPFLGLILAAA 299 (326)
Q Consensus 277 HPE~~~~~~~~~~lf~~Fl~~a~ 299 (326)
|||+... ....+|++|+++|.
T Consensus 183 HPE~~~~--~g~~l~~~fl~~~~ 203 (205)
T PRK13141 183 HPEKSGD--VGLKILKNFVEMVE 203 (205)
T ss_pred CCccchH--HHHHHHHHHHHHhh
Confidence 9999753 34589999998873
No 52
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.90 E-value=1.4e-23 Score=185.88 Aligned_cols=188 Identities=21% Similarity=0.211 Sum_probs=120.3
Q ss_pred EEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCC---
Q psy17159 48 IGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRG--- 124 (326)
Q Consensus 48 I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~--- 124 (326)
|+|| |||. +|..++.+.|+++|+.+ .+ +.. .++++++|+||||||.....
T Consensus 1 i~i~-d~g~--~~~~~~~~~l~~~g~~v----~v--~~~------------------~~~l~~~d~iiipG~~~~~~~~~ 53 (198)
T cd01748 1 IAII-DYGM--GNLRSVANALERLGAEV----II--TSD------------------PEEILSADKLILPGVGAFGDAMA 53 (198)
T ss_pred CEEE-eCCC--ChHHHHHHHHHHCCCeE----EE--EcC------------------hHHhccCCEEEECCCCcHHHHHH
Confidence 6899 9999 99999999999988732 22 221 12577899999988632211
Q ss_pred ---CchHHHHHHHHHHcCCCEEEEehhHHHHHHHh--Cc--ccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcc
Q psy17159 125 ---LEGKIAACKWARENNKPFLGICLGLQAAVIEY--GR--SVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGT 197 (326)
Q Consensus 125 ---~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~--g~--~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~ 197 (326)
..+..+.++++.+.++|+||||+|||+|+.+. |+ ..+++.++.+.+.... + . ...
T Consensus 54 ~~~~~~~~~~i~~~~~~~~pilGiC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~~~~------~-------~-----~~~ 115 (198)
T cd01748 54 NLRERGLIEALKEAIASGKPFLGICLGMQLLFESSEEGGGTKGLGLIPGKVVRFPAS------E-------G-----LKV 115 (198)
T ss_pred HHHHcChHHHHHHHHHCCCcEEEECHHHHHhccccccCCCCCCCCCcceEEEECCCC------C-------C-----ceE
Confidence 12467888888888999999999999999873 22 2344444433221100 0 0 000
Q ss_pred eeecceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEccc
Q psy17159 198 MRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFH 277 (326)
Q Consensus 198 ~~lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFH 277 (326)
...|++.+..... +.++..+.+ .....++|++.+.+ ++.+.++|+++++. ..+....++++ ||||||
T Consensus 116 ~~~G~~~v~~~~~-~~lf~~l~~---~~~v~~~Hs~~v~~-------~~~~~~la~s~~~~-~~~~~~~~~~i-~GvQFH 182 (198)
T cd01748 116 PHMGWNQLEITKE-SPLFKGIPD---GSYFYFVHSYYAPP-------DDPDYILATTDYGG-KFPAAVEKDNI-FGTQFH 182 (198)
T ss_pred EEeccceEEECCC-ChhhhCCCC---CCeEEEEeEEEEec-------CCcceEEEEecCCC-eEEEEEEcCCE-EEEECC
Confidence 1347777666553 444444432 23456678887642 23467889887765 33333455665 999999
Q ss_pred CCCcCCCCCCChHHHHHH
Q psy17159 278 PEYLSRPLRPSPPFLGLI 295 (326)
Q Consensus 278 PE~~~~~~~~~~lf~~Fl 295 (326)
||+... ....+++||+
T Consensus 183 PE~~~~--~g~~~~~nf~ 198 (198)
T cd01748 183 PEKSGK--AGLKLLKNFL 198 (198)
T ss_pred CccccH--hHHHHHHhhC
Confidence 999853 3457899884
No 53
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.90 E-value=2.9e-23 Score=182.08 Aligned_cols=176 Identities=22% Similarity=0.268 Sum_probs=114.5
Q ss_pred EEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCC-C--
Q psy17159 48 IGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKR-G-- 124 (326)
Q Consensus 48 I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~-~-- 124 (326)
|+|| |||. ||..|+.++|+++|.+ +.++.. .+++.++|+|||||+.... .
T Consensus 2 i~ii-dyg~--gN~~s~~~al~~~g~~------~~~v~~------------------~~~l~~~D~lIlPG~g~~~~~~~ 54 (192)
T PRK13142 2 IVIV-DYGL--GNISNVKRAIEHLGYE------VVVSNT------------------SKIIDQAETIILPGVGHFKDAMS 54 (192)
T ss_pred EEEE-EcCC--ccHHHHHHHHHHcCCC------EEEEeC------------------HHHhccCCEEEECCCCCHHHHHH
Confidence 8999 9999 9999999999997763 233331 2367889999999963211 1
Q ss_pred ---CchHHHHHHHHHHcCCCEEEEehhHHHHHHHh--C-cccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcce
Q psy17159 125 ---LEGKIAACKWARENNKPFLGICLGLQAAVIEY--G-RSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTM 198 (326)
Q Consensus 125 ---~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~--g-~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~ 198 (326)
..++.+.|++ ..++|+||||+|||+|+... | .+.||+.++.+.+|... . + +.+|
T Consensus 55 ~L~~~gl~~~i~~--~~g~PvlGIClGmQlL~~~~~eg~~~GLgll~~~V~rf~~~---~--~-vph~------------ 114 (192)
T PRK13142 55 EIKRLNLNAILAK--NTDKKMIGICLGMQLMYEHSDEGDASGLGFIPGNISRIQTE---Y--P-VPHL------------ 114 (192)
T ss_pred HHHHCCcHHHHHH--hCCCeEEEECHHHHHHhhhcccCCcCccCceeEEEEECCCC---C--C-CCcc------------
Confidence 1245666766 46899999999999999765 3 46799999999888432 1 1 2222
Q ss_pred eecceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCC-eEEEEEECCCCeEEEEccc
Q psy17159 199 RLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEV-RMEIAELRDHPYYVAVQFH 277 (326)
Q Consensus 199 ~lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~-~veaie~~~~~~~~GvQFH 277 (326)
||..+.. . .+++ . ...++.|+|.+. . ++. +++++..|. ++.+++ ..++ +|+|||
T Consensus 115 --GWn~~~~--~-~~l~----~----~~~yFVhSy~v~------~-~~~--v~~~~~yg~~~~~~v~--~~n~-~g~QFH 169 (192)
T PRK13142 115 --GWNNLVS--K-HPML----N----QDVYFVHSYQAP------M-SEN--VIAYAQYGADIPAIVQ--FNNY-IGIQFH 169 (192)
T ss_pred --cccccCC--C-Cccc----c----cEEEEECCCeEC------C-CCC--EEEEEECCCeEEEEEE--cCCE-EEEecC
Confidence 4443221 1 1111 1 234566787662 1 223 344444444 455554 3444 999999
Q ss_pred CCCcCCCCCCChHHHHHHHH
Q psy17159 278 PEYLSRPLRPSPPFLGLILA 297 (326)
Q Consensus 278 PE~~~~~~~~~~lf~~Fl~~ 297 (326)
||.+.+. +..++++|++-
T Consensus 170 PEkS~~~--G~~ll~nf~~~ 187 (192)
T PRK13142 170 PEKSGTY--GLQILRQAIQG 187 (192)
T ss_pred cccCcHh--HHHHHHHHHhc
Confidence 9997743 46899999763
No 54
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.90 E-value=1.3e-22 Score=178.64 Aligned_cols=179 Identities=17% Similarity=0.187 Sum_probs=117.6
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCC-
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRG- 124 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~- 124 (326)
|+|+|+ +. +||+.|..++|+.+|.. +..++. .+.++++||||||||++...
T Consensus 2 m~~~i~-~~---~g~~~~~~~~l~~~g~~------~~~~~~------------------~~~l~~~dgiii~GG~~~~~~ 53 (189)
T PRK13525 2 MKIGVL-AL---QGAVREHLAALEALGAE------AVEVRR------------------PEDLDEIDGLILPGGESTTMG 53 (189)
T ss_pred CEEEEE-Ec---ccCHHHHHHHHHHCCCE------EEEeCC------------------hhHhccCCEEEECCCChHHHH
Confidence 689999 44 48999999999887763 223331 12578899999999976431
Q ss_pred ----CchHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcc---cccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcc
Q psy17159 125 ----LEGKIAACKWARENNKPFLGICLGLQAAVIEYGRS---VLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGT 197 (326)
Q Consensus 125 ----~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~---~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~ 197 (326)
.....++++.+.++++|+||||+|+|+|+.++|+. .+|+.++.+.+.... .
T Consensus 54 ~~~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~~gg~~~~~lg~~~~~v~~~~~g---------------------~- 111 (189)
T PRK13525 54 KLLRDFGLLEPLREFIASGLPVFGTCAGMILLAKEIEGYEQEHLGLLDITVRRNAFG---------------------R- 111 (189)
T ss_pred HHHHhccHHHHHHHHHHCCCeEEEECHHHHHHHhhcccCCCCceeeEEEEEEEccCC---------------------C-
Confidence 22345788889899999999999999999988763 345554443322110 0
Q ss_pred eeecceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEccc
Q psy17159 198 MRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFH 277 (326)
Q Consensus 198 ~~lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFH 277 (326)
..|.... ..++.. .+. ....++.|++. +..+ +++++++|++++ . +++++. .+ +||+|||
T Consensus 112 -~~g~~~~------~~~~~~-~~~--~~~~~~~H~d~-----v~~l-p~~~~vlA~~~~-~-~~~~~~--~~-~~g~QfH 170 (189)
T PRK13525 112 -QVDSFEA------ELDIKG-LGE--PFPAVFIRAPY-----IEEV-GPGVEVLATVGG-R-IVAVRQ--GN-ILATSFH 170 (189)
T ss_pred -ceeeEEe------cccccC-CCC--CeEEEEEeCce-----eecc-CCCcEEEEEcCC-E-EEEEEe--CC-EEEEEeC
Confidence 0111111 111111 222 23455666554 4455 789999999864 3 567764 34 4999999
Q ss_pred CCCcCCCCCCChHHHHHHHHHH
Q psy17159 278 PEYLSRPLRPSPPFLGLILAAA 299 (326)
Q Consensus 278 PE~~~~~~~~~~lf~~Fl~~a~ 299 (326)
||+... .+||++|++.|.
T Consensus 171 PE~~~~----~~~~~~f~~~~~ 188 (189)
T PRK13525 171 PELTDD----TRVHRYFLEMVK 188 (189)
T ss_pred CccCCC----chHHHHHHHHhh
Confidence 999763 489999998874
No 55
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.89 E-value=8.2e-23 Score=179.88 Aligned_cols=122 Identities=25% Similarity=0.406 Sum_probs=92.2
Q ss_pred hhhcCCCEEEECCCCCCCCC------------------chHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCc
Q psy17159 106 SDFCKVDGIIVPGGFGKRGL------------------EGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDAD 167 (326)
Q Consensus 106 ~~l~~~dglilpGG~~~~~~------------------~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~ 167 (326)
..+..+||||||||++.... .....+++++.+.++|+||||+|||+|+.++|+++...
T Consensus 49 ~~l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~PilgiC~G~Q~l~~~~Gg~v~~~---- 124 (189)
T cd01745 49 QYLELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRAALERGKPILGICRGMQLLNVALGGTLYQD---- 124 (189)
T ss_pred HHHhhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHHHHHHHHHHHCCCCEEEEcchHHHHHHHhCCeEEcC----
Confidence 35678999999999754210 12367788888889999999999999999999887210
Q ss_pred ccccCCCCCCccCCeeeccCCCCCCCCCcceeecceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCC
Q psy17159 168 TEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHG 247 (326)
Q Consensus 168 ~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~g 247 (326)
. .++.+ |++. +.++ +++
T Consensus 125 --------------------------------------------~-----------~v~~~--H~~~-----v~~~-~~~ 141 (189)
T cd01745 125 --------------------------------------------I-----------RVNSL--HHQA-----IKRL-ADG 141 (189)
T ss_pred --------------------------------------------C-----------ceech--HHHH-----Hhhc-CCC
Confidence 0 12233 3333 3344 779
Q ss_pred eEEEEEcCCCCeEEEEEECCCCeEEEEcccCCCcCC-CCCCChHHHHHH
Q psy17159 248 FLFTGVDEKEVRMEIAELRDHPYYVAVQFHPEYLSR-PLRPSPPFLGLI 295 (326)
Q Consensus 248 l~v~a~~~dg~~veaie~~~~~~~~GvQFHPE~~~~-~~~~~~lf~~Fl 295 (326)
++++|+++++. +||++++++++++|+|||||+..+ +....++|++|+
T Consensus 142 ~~vla~~~d~~-vea~~~~~~~~~~gvQfHPE~~~~~~~~~~~if~~f~ 189 (189)
T cd01745 142 LRVEARAPDGV-IEAIESPDRPFVLGVQWHPEWLADTDPDSLKLFEAFV 189 (189)
T ss_pred CEEEEECCCCc-EEEEEeCCCCeEEEEecCCCcCcccCchHhHHHHHhC
Confidence 99999999998 999999984445999999999987 445568999984
No 56
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.89 E-value=1.8e-22 Score=179.17 Aligned_cols=190 Identities=19% Similarity=0.191 Sum_probs=120.8
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCC-
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRG- 124 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~- 124 (326)
|||+|| ||+. +|..++.++|+.+|..+ .+. .. ...++++|+||||||.....
T Consensus 1 ~~~~v~-~~~~--~~~~~~~~~l~~~G~~~----~~~--~~------------------~~~~~~~d~iii~G~~~~~~~ 53 (200)
T PRK13143 1 MMIVII-DYGV--GNLRSVSKALERAGAEV----VIT--SD------------------PEEILDADGIVLPGVGAFGAA 53 (200)
T ss_pred CeEEEE-ECCC--ccHHHHHHHHHHCCCeE----EEE--CC------------------HHHHccCCEEEECCCCCHHHH
Confidence 589999 9998 99999999999998742 222 11 12567899999998633221
Q ss_pred ---CchHHHHHHHHHHcCCCEEEEehhHHHHHHHh-Ccc---cccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcc
Q psy17159 125 ---LEGKIAACKWARENNKPFLGICLGLQAAVIEY-GRS---VLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGT 197 (326)
Q Consensus 125 ---~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~-g~~---~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~ 197 (326)
.....+.++++++.++|+||||+|+|+|+..+ +++ .+++.++.+.+.... ...
T Consensus 54 ~~~~~~~~~~i~~~~~~~~PilgIC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~~~~--------------------~~~ 113 (200)
T PRK13143 54 MENLSPLRDVILEAARSGKPFLGICLGMQLLFESSEEGGGVRGLGLFPGRVVRFPAG--------------------VKV 113 (200)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhhhccCCCCCCcceeeEEEEEcCCC--------------------CCC
Confidence 23456778888899999999999999999753 221 122223322221100 001
Q ss_pred eeecceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEccc
Q psy17159 198 MRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFH 277 (326)
Q Consensus 198 ~~lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFH 277 (326)
.+.|++.+.+.. ++.+.+.... . ...++|++.+.+ ++++.++|+++++..++++... .++ ||+|||
T Consensus 114 ~~~g~~~v~~~~--~~~l~~~l~~--~-~~~~~Hs~~~~~-------~~~~~~la~~~~~~~~~~~~~~-~~~-~gvQfH 179 (200)
T PRK13143 114 PHMGWNTVKVVK--DCPLFEGIDG--E-YVYFVHSYYAYP-------DDEDYVVATTDYGIEFPAAVCN-DNV-FGTQFH 179 (200)
T ss_pred CeecceEEEEcC--CChhhccCCC--c-EEEEEeeeeeCC-------CCcceEEEEEcCCCEEEEEEEc-CCE-EEEeCC
Confidence 124666666554 4444432222 1 234467776532 4568899999886534454444 465 999999
Q ss_pred CCCcCCCCCCChHHHHHHHHH
Q psy17159 278 PEYLSRPLRPSPPFLGLILAA 298 (326)
Q Consensus 278 PE~~~~~~~~~~lf~~Fl~~a 298 (326)
||+... ...+||++|++.+
T Consensus 180 PE~~~~--~g~~i~~~f~~~~ 198 (200)
T PRK13143 180 PEKSGE--TGLKILENFVELI 198 (200)
T ss_pred CccchH--HHHHHHHHHHHHH
Confidence 999742 2358999999876
No 57
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.89 E-value=2.1e-22 Score=178.76 Aligned_cols=186 Identities=20% Similarity=0.270 Sum_probs=110.9
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCC--
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKR-- 123 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~-- 123 (326)
|||+|+ .+++...+...++.++....+..+++.++.. .+.+.++|+||||||++..
T Consensus 1 ~~i~vl----~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~------------------~~~l~~~d~iii~GG~~~~~~ 58 (200)
T PRK13527 1 MKIGVL----ALQGDVEEHIDALKRALDELGIDGEVVEVRR------------------PGDLPDCDALIIPGGESTTIG 58 (200)
T ss_pred CEEEEE----EECCccHHHHHHHHHHHHhcCCCeEEEEeCC------------------hHHhccCCEEEECCCcHHHHH
Confidence 467777 3334444444444443333334555555542 1257789999999998653
Q ss_pred ---CCchHHHHHHHHHHcCCCEEEEehhHHHHHHHhCccc--------ccccCCcccccCCCCCCccCCeeeccCCCCCC
Q psy17159 124 ---GLEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSV--------LGLKDADTEEEQPPGQTLEHPVVVYMPEHNPG 192 (326)
Q Consensus 124 ---~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~--------l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~ 192 (326)
...++.+.|+.+.+.++|+||||+|||+|+.++|+.. +|+.+..+.+. +
T Consensus 59 ~~~~~~~~~~~i~~~~~~~~pilGIC~G~Qll~~~~gg~~v~~~~~~~lG~~~~~v~~~---------------~----- 118 (200)
T PRK13527 59 RLMKREGILDEIKEKIEEGLPILGTCAGLILLAKEVGDDRVTKTEQPLLGLMDVTVKRN---------------A----- 118 (200)
T ss_pred HHHhhccHHHHHHHHHHCCCeEEEECHHHHHHHhhhcCCccCCCCCceeeeeEEEEeec---------------c-----
Confidence 2235678888888899999999999999999987632 22222111100 0
Q ss_pred CCCcceeecceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEE
Q psy17159 193 NMGGTMRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYV 272 (326)
Q Consensus 193 ~~~~~~~lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~ 272 (326)
.|+....+.. ..++..+ +. .....++|++.+ ..+ +++++++|+++++. + +++. .++ |
T Consensus 119 -------~g~~~~~~~~--~~~~~~~-~~--~~~~~~~H~~~v-----~~l-p~~~~~la~~~~~~-~-a~~~--~~~-~ 175 (200)
T PRK13527 119 -------FGRQRDSFEA--EIDLSGL-DG--PFHAVFIRAPAI-----TKV-GGDVEVLAKLDDRI-V-AVEQ--GNV-L 175 (200)
T ss_pred -------ccCccccEEE--eEecccc-CC--cceEEEEccccc-----ccc-CCCeEEEEEECCEE-E-EEEE--CCE-E
Confidence 0100000000 1111111 22 233344455544 344 78999999998874 4 6653 344 9
Q ss_pred EEcccCCCcCCCCCCChHHHHHHHHHHh
Q psy17159 273 AVQFHPEYLSRPLRPSPPFLGLILAAAG 300 (326)
Q Consensus 273 GvQFHPE~~~~~~~~~~lf~~Fl~~a~~ 300 (326)
|+|||||.+.. ..+|++|+..+..
T Consensus 176 g~QfHPE~~~~----~~l~~~f~~~~~~ 199 (200)
T PRK13527 176 ATAFHPELTDD----TRIHEYFLKKVKG 199 (200)
T ss_pred EEEeCCCCCCC----CHHHHHHHHHHhc
Confidence 99999998753 4899999998754
No 58
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.89 E-value=2.4e-22 Score=177.48 Aligned_cols=184 Identities=20% Similarity=0.155 Sum_probs=119.4
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCC-
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRG- 124 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~- 124 (326)
.+|+|+ ||+. ....-+.+.++..|+.. ...+....+.++ -...++|||||+|||.+..
T Consensus 2 ~~ilIl-d~g~--q~~~li~r~~re~g~v~----~e~~~~~~~~~~--------------~~~~~~~giIlsGgp~sv~~ 60 (198)
T COG0518 2 RKILIL-DFGG--QYLGLIARRLRELGYVY----SEIVPYTGDAEE--------------LPLDSPDGIIISGGPMSVYD 60 (198)
T ss_pred cEEEEE-eCCC--cHhHHHHHHHHHcCCce----EEEEeCCCCccc--------------ccccCCCEEEEcCCCCCCcc
Confidence 479999 9987 55566788888777311 111111111110 0234669999999995532
Q ss_pred ----CchHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcceee
Q psy17159 125 ----LEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRL 200 (326)
Q Consensus 125 ----~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~l 200 (326)
.......|+++...++|+||||+|||+|+.++|++|-. .... ..
T Consensus 61 ~~~w~~~~~~~i~~~~~p~~pvLGIC~G~Ql~A~~lGg~V~~---~~~~-----------------------------E~ 108 (198)
T COG0518 61 EDPWLPREKDLIKDAGVPGKPVLGICLGHQLLAKALGGKVER---GPKR-----------------------------EI 108 (198)
T ss_pred ccccchhHHHHHHHhCCCCCCEEEEChhHHHHHHHhCCEEec---cCCC-----------------------------cc
Confidence 22345566666555677999999999999999999832 1101 23
Q ss_pred cceeEEEecCCC-chHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEcccCC
Q psy17159 201 GKHETHFKPEHK-SKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPE 279 (326)
Q Consensus 201 g~~~~~~~~~~~-s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFHPE 279 (326)
|+..+.+... . .++..+......++++|.. .+.++ ++|++++|.++.+. ++|+++. +++ ||+|||||
T Consensus 109 G~~~v~~~~~-~~~l~~gl~~~~~~v~~sH~D-------~v~~l-P~g~~vlA~s~~cp-~qa~~~~-~~~-~gvQFHpE 176 (198)
T COG0518 109 GWTPVELTEG-DDPLFAGLPDLFTTVFMSHGD-------TVVEL-PEGAVVLASSETCP-NQAFRYG-KRA-YGVQFHPE 176 (198)
T ss_pred ceEEEEEecC-ccccccCCccccCccccchhC-------ccccC-CCCCEEEecCCCCh-hhheecC-CcE-EEEeeeeE
Confidence 5565655521 2 2344333221015555543 35566 89999999999999 9999998 665 99999999
Q ss_pred CcCCCCCCChHHHHHHH
Q psy17159 280 YLSRPLRPSPPFLGLIL 296 (326)
Q Consensus 280 ~~~~~~~~~~lf~~Fl~ 296 (326)
.+.. ....+++||..
T Consensus 177 v~~~--~~~~~l~nf~~ 191 (198)
T COG0518 177 VTHE--YGEALLENFAH 191 (198)
T ss_pred EeHH--HHHHHHHHhhh
Confidence 9872 23478888875
No 59
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.88 E-value=3.5e-22 Score=179.70 Aligned_cols=195 Identities=17% Similarity=0.260 Sum_probs=131.1
Q ss_pred eEEEEEcccCCCchhHHHHHHHHH-HHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALE-HASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRG 124 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~-~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~ 124 (326)
+||+|+ .|.. ..+-.++.++|+ .+|.. +..+|... ..++++|+||||||++...
T Consensus 1 ~~v~Vl-~~~G-~n~~~d~~~a~~~~~G~~----~~~v~~~~-------------------~~l~~~D~lvipGG~~~~d 55 (219)
T PRK03619 1 MKVAVI-VFPG-SNCDRDMARALRDLLGAE----PEYVWHKE-------------------TDLDGVDAVVLPGGFSYGD 55 (219)
T ss_pred CEEEEE-ecCC-cChHHHHHHHHHhcCCCe----EEEEecCc-------------------CCCCCCCEEEECCCCchhh
Confidence 489999 6653 123577899998 77753 23333321 1467899999999975321
Q ss_pred ---------CchHHHHHHHHHHcCCCEEEEehhHHHHHHH--hCcccccccCCcccccCCCCCCccCCeeeccCCCCCCC
Q psy17159 125 ---------LEGKIAACKWARENNKPFLGICLGLQAAVIE--YGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGN 193 (326)
Q Consensus 125 ---------~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~--~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~ 193 (326)
...+.++|+.+.++++|++|||.|+|+|+.+ +++++. ...
T Consensus 56 ~l~~~~~~~~~~~~~~l~~~~~~g~~ilgIC~G~qlLa~~GLL~g~l~--------~n~--------------------- 106 (219)
T PRK03619 56 YLRCGAIAAFSPIMKAVKEFAEKGKPVLGICNGFQILTEAGLLPGALT--------RNA--------------------- 106 (219)
T ss_pred hhccchhhhchHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCeEE--------EcC---------------------
Confidence 1345677888888999999999999999985 333321 100
Q ss_pred CCcceeecceeEEEecCCCchHHhhhCCCcc---eeeecceeeeeCCcccccccCCCeEEEEEc---CCCCeEEEEEECC
Q psy17159 194 MGGTMRLGKHETHFKPEHKSKLKLLYGNKDK---IEERHRHRYEVNKKYVPDYEKHGFLFTGVD---EKEVRMEIAELRD 267 (326)
Q Consensus 194 ~~~~~~lg~~~~~~~~~~~s~l~~~~~~~~~---v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~---~dg~~veaie~~~ 267 (326)
.+.....+..+.+... ++.+.+.++.... ..+.|.|+|.+|++++.+++..++.++.++ ++|...+..+..+
T Consensus 107 -~~~~~~~~v~v~i~~~-~~~~~~~~~~g~~~~~~~aH~~~r~~~~~~~~~~l~~~~~~~~~~~~~npngs~~~ia~i~~ 184 (219)
T PRK03619 107 -SLKFICRDVHLRVENN-DTPFTSGYEKGEVIRIPIAHGEGNYYADEETLKRLEGNGQVVFRYCDENPNGSVNDIAGIVN 184 (219)
T ss_pred -CCcEEEEEEEEEECCC-CChhhcCCCCCCEEEEEEEcCcccEEECHHHHHHHHhCCcEEEEEcCCCCCCCHHHhcccCC
Confidence 0011123334444443 5777777643222 257888999999999898878888866655 7886344455554
Q ss_pred -CCeEEEEcccCCCcCCC----CCCChHHHHHHH
Q psy17159 268 -HPYYVAVQFHPEYLSRP----LRPSPPFLGLIL 296 (326)
Q Consensus 268 -~~~~~GvQFHPE~~~~~----~~~~~lf~~Fl~ 296 (326)
+++++|+|||||+.+.+ .++++||.+|++
T Consensus 185 ~~~~~~g~~~HPE~~~~~~~~~~~g~~lf~~~v~ 218 (219)
T PRK03619 185 EKGNVLGMMPHPERAVEPLLGSTDGLKLFESLLK 218 (219)
T ss_pred CCCCEEEEeCCCCccccCccCCCcCHHHHHHHhh
Confidence 55679999999999876 567899999985
No 60
>PRK09065 glutamine amidotransferase; Provisional
Probab=99.88 E-value=1.2e-21 Score=178.37 Aligned_cols=143 Identities=20% Similarity=0.217 Sum_probs=96.8
Q ss_pred hhcCCCEEEECCCCCCCC-----CchHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCC
Q psy17159 107 DFCKVDGIIVPGGFGKRG-----LEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHP 181 (326)
Q Consensus 107 ~l~~~dglilpGG~~~~~-----~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~p 181 (326)
.+.++|||||+||+.+.. ...+.++|+.+.+.++|+||||+|||+|+.++|+++..-..+
T Consensus 51 ~~~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~~g--------------- 115 (237)
T PRK09065 51 APDDFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQLLAHALGGEVGYNPAG--------------- 115 (237)
T ss_pred ChhhcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChhHHHHHHHcCCccccCCCC---------------
Confidence 467899999999986532 234577888888899999999999999999999988321100
Q ss_pred eeeccCCCCCCCCCcceeecceeEEEecC-CCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeE
Q psy17159 182 VVVYMPEHNPGNMGGTMRLGKHETHFKPE-HKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRM 260 (326)
Q Consensus 182 lv~~~~~~~~~~~~~~~~lg~~~~~~~~~-~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~v 260 (326)
...|.+.+.++.. ....+.+..+.. ....+.|++.| ..+ +++++++|+++++. +
T Consensus 116 ----------------~e~G~~~v~~~~~~~~~~l~~~~~~~--~~v~~~H~d~v-----~~l-p~~~~~la~s~~~~-i 170 (237)
T PRK09065 116 ----------------RESGTVTVELHPAAADDPLFAGLPAQ--FPAHLTHLQSV-----LRL-PPGAVVLARSAQDP-H 170 (237)
T ss_pred ----------------CccceEEEEEccccccChhhhcCCcc--CcEeeehhhhh-----hhC-CCCCEEEEcCCCCC-e
Confidence 1134555555432 011222222332 23333444443 345 78999999999998 9
Q ss_pred EEEEECCCCeEEEEcccCCCcCCCCCCChHHHHHHHH
Q psy17159 261 EIAELRDHPYYVAVQFHPEYLSRPLRPSPPFLGLILA 297 (326)
Q Consensus 261 eaie~~~~~~~~GvQFHPE~~~~~~~~~~lf~~Fl~~ 297 (326)
++++++++ ++|+|||||++. .++..++..
T Consensus 171 qa~~~~~~--i~gvQfHPE~~~------~~~~~~~~~ 199 (237)
T PRK09065 171 QAFRYGPH--AWGVQFHPEFTA------HIMRAYLRA 199 (237)
T ss_pred eEEEeCCC--EEEEEeCCcCCH------HHHHHHHHh
Confidence 99999764 499999999853 466666653
No 61
>PRK06490 glutamine amidotransferase; Provisional
Probab=99.88 E-value=1.6e-21 Score=177.51 Aligned_cols=180 Identities=20% Similarity=0.213 Sum_probs=119.4
Q ss_pred ceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCC
Q psy17159 45 TVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRG 124 (326)
Q Consensus 45 ~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~ 124 (326)
+++|.+|=++.. +...++.+.|+..|. .+++....... . .++.++++||+||+||+....
T Consensus 7 ~~~vlvi~h~~~--~~~g~l~~~l~~~g~----~~~v~~~~~~~----~----------~p~~l~~~dgvii~Ggp~~~~ 66 (239)
T PRK06490 7 KRPVLIVLHQER--STPGRVGQLLQERGY----PLDIRRPRLGD----P----------LPDTLEDHAGAVIFGGPMSAN 66 (239)
T ss_pred CceEEEEecCCC--CCChHHHHHHHHCCC----ceEEEeccCCC----C----------CCCcccccCEEEEECCCCCCC
Confidence 578888856665 566677777777665 33333222111 0 122577899999999987642
Q ss_pred -----CchHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCccee
Q psy17159 125 -----LEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMR 199 (326)
Q Consensus 125 -----~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~ 199 (326)
...+.++|+.+++.++|+||||+|||+|+.++|+++.....+ ...
T Consensus 67 d~~~wi~~~~~~i~~~~~~~~PvLGIC~G~Qlla~alGG~V~~~~~G------------------------------~~e 116 (239)
T PRK06490 67 DPDDFIRREIDWISVPLKENKPFLGICLGAQMLARHLGARVAPHPDG------------------------------RVE 116 (239)
T ss_pred CCchHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHHcCCEeecCCCC------------------------------CCc
Confidence 233567888888899999999999999999999998432211 012
Q ss_pred ecceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEcccCC
Q psy17159 200 LGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPE 279 (326)
Q Consensus 200 lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFHPE 279 (326)
+|++.+.+... +..+.. .. ...+|.|++.+ .+ ++++.++|+++++. ++++++.++ +||+|||||
T Consensus 117 ~G~~~i~~~~~-~~~~~~---~~--~~~~~~H~d~~------~l-P~~~~~LA~s~~~~-~qa~~~~~~--v~g~QfHPE 180 (239)
T PRK06490 117 IGYYPLRPTEA-GRALMH---WP--EMVYHWHREGF------DL-PAGAELLATGDDFP-NQAFRYGDN--AWGLQFHPE 180 (239)
T ss_pred cceEEeEECCC-cccccC---CC--CEEEEECCccc------cC-CCCCEEEEeCCCCC-eEEEEeCCC--EEEEeeCcc
Confidence 45555555543 332211 11 12344555431 34 78999999999999 999999764 499999999
Q ss_pred CcCCCCCCChHHHHHHH
Q psy17159 280 YLSRPLRPSPPFLGLIL 296 (326)
Q Consensus 280 ~~~~~~~~~~lf~~Fl~ 296 (326)
++. .++..++.
T Consensus 181 ~~~------~~~~~~i~ 191 (239)
T PRK06490 181 VTR------AMMHRWVV 191 (239)
T ss_pred CCH------HHHHHHHH
Confidence 973 56666665
No 62
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=99.87 E-value=2e-21 Score=194.33 Aligned_cols=196 Identities=21% Similarity=0.214 Sum_probs=130.0
Q ss_pred ceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCC
Q psy17159 45 TVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRG 124 (326)
Q Consensus 45 ~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~ 124 (326)
..+|+|| |||. ||..|+.++|+.+|+.+ .++.. .+.++.+|+||||||.....
T Consensus 6 ~~~i~ii-DyG~--GN~~sl~~al~~~G~~v------~~v~~------------------~~~l~~~D~lIlpG~gs~~~ 58 (538)
T PLN02617 6 DSEVTLL-DYGA--GNVRSVRNAIRHLGFTI------KDVQT------------------PEDILNADRLIFPGVGAFGS 58 (538)
T ss_pred CCeEEEE-ECCC--CCHHHHHHHHHHCCCeE------EEECC------------------hhhhccCCEEEECCCCCHHH
Confidence 4689999 9999 99999999999988632 33331 12578999999999643221
Q ss_pred ------CchHHHHHHHHHHcCCCEEEEehhHHHHHHHh---C-cccccccCCcccccCCCCCCccCCeeeccCCCCCCCC
Q psy17159 125 ------LEGKIAACKWARENNKPFLGICLGLQAAVIEY---G-RSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNM 194 (326)
Q Consensus 125 ------~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~---g-~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~ 194 (326)
..++.+.|+.+++.++|+||||+|||+|+..+ | ...+++.++.+.++... .+.+ +
T Consensus 59 ~m~~L~~~gl~~~i~~~i~~g~PvLGIC~G~QlLa~~~~E~g~~~glg~l~G~v~~~~~~---~~~~-v----------- 123 (538)
T PLN02617 59 AMDVLNNRGMAEALREYIQNDRPFLGICLGLQLLFESSEENGPVEGLGVIPGVVGRFDSS---NGLR-V----------- 123 (538)
T ss_pred HHHHHHHcCHHHHHHHHHHcCCCEEEECHHHHHHhhhhhhcCCccCcccccceEEECCcc---CCCC-C-----------
Confidence 13467788888889999999999999999763 2 34577777766655221 0001 0
Q ss_pred CcceeecceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCC-CeEEEEEECCCCeEEE
Q psy17159 195 GGTMRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKE-VRMEIAELRDHPYYVA 273 (326)
Q Consensus 195 ~~~~~lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg-~~veaie~~~~~~~~G 273 (326)
-..||+.+.... ++.+...++. ...+++|+|.+.+ +...+..+.+++..+ .++++++.. + ++|
T Consensus 124 ---p~iGw~~V~~~~--~spL~~~l~~---~~vy~vHSy~v~~-----~p~~~~~v~a~~~~g~~~IaAI~~g--n-I~G 187 (538)
T PLN02617 124 ---PHIGWNALQITK--DSELLDGVGG---RHVYFVHSYRATP-----SDENKDWVLATCNYGGEFIASVRKG--N-VHA 187 (538)
T ss_pred ---CeecceEEEecC--CChhHhcCCC---cEEEEEeEEEEEe-----cCCCCcEEEEEEccCCCcEEEEEeC--C-EEE
Confidence 124777777655 4444433333 2345678887532 112234455555432 248999864 4 599
Q ss_pred EcccCCCcCCCCCCChHHHHHHHHHHh
Q psy17159 274 VQFHPEYLSRPLRPSPPFLGLILAAAG 300 (326)
Q Consensus 274 vQFHPE~~~~~~~~~~lf~~Fl~~a~~ 300 (326)
+|||||.+.. ...++|++|++....
T Consensus 188 VQFHPE~s~~--~G~~L~~nFl~~~~~ 212 (538)
T PLN02617 188 VQFHPEKSGA--TGLSILRRFLEPKSS 212 (538)
T ss_pred EEcCCccCch--hHHHHHHHHHHhhhh
Confidence 9999999862 235899999987763
No 63
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=99.87 E-value=1.7e-21 Score=172.45 Aligned_cols=185 Identities=20% Similarity=0.170 Sum_probs=113.2
Q ss_pred EEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCC-C--
Q psy17159 48 IGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKR-G-- 124 (326)
Q Consensus 48 I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~-~-- 124 (326)
|+|| |||. +|..++.++|+..|+. +.++.- .+.++++|+|||||+.... .
T Consensus 1 ~~~~-~~~~--gn~~~l~~~l~~~g~~----v~v~~~--------------------~~~l~~~d~lii~G~~~~~~~~~ 53 (196)
T TIGR01855 1 IVII-DYGV--GNLGSVKRALKRVGAE----PVVVKD--------------------SKEAELADKLILPGVGAFGAAMA 53 (196)
T ss_pred CEEE-ecCC--cHHHHHHHHHHHCCCc----EEEEcC--------------------HHHhccCCEEEECCCCCHHHHHH
Confidence 6899 9998 9999999999988763 232221 1256789999998842211 0
Q ss_pred ---CchHHHHHHHHHHcCCCEEEEehhHHHHHHHh--Cc--ccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcc
Q psy17159 125 ---LEGKIAACKWARENNKPFLGICLGLQAAVIEY--GR--SVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGT 197 (326)
Q Consensus 125 ---~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~--g~--~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~ 197 (326)
..+...+++.+.+.++|+||||+|||+|+.+. |+ ..+|+.++.+.+.... +.
T Consensus 54 ~l~~~~~~~l~~~~~~~~~pvlGiC~G~Qll~~~~~~~~~~~glg~~~~~v~~~~~~----~~----------------- 112 (196)
T TIGR01855 54 RLRENGLDLFVELVVRLGKPVLGICLGMQLLFERSEEGGGVPGLGLIKGNVVKLEAR----KV----------------- 112 (196)
T ss_pred HHHHcCcHHHHHHHHhCCCCEEEECHHHHHhhhccccCCCCCCcceeeEEEEECCCC----CC-----------------
Confidence 01122333777788999999999999999874 22 3345455544322100 00
Q ss_pred eeecceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEccc
Q psy17159 198 MRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFH 277 (326)
Q Consensus 198 ~~lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFH 277 (326)
-..|+..+..... ++++..+ +. ....+++|++.+.+. + +. +++.++++. ..+......++ ||+|||
T Consensus 113 ~~~g~~~~~~~~~-~~l~~~l-~~--~~~v~~~Hs~~v~~~------~-~~-~~a~~~~g~-~~~~~~~~~~i-~GvQFH 178 (196)
T TIGR01855 113 PHMGWNEVHPVKE-SPLLNGI-DE--GAYFYFVHSYYAVCE------E-EA-VLAYADYGE-KFPAAVQKGNI-FGTQFH 178 (196)
T ss_pred CcccCeeeeeCCC-ChHHhCC-CC--CCEEEEECeeEecCC------C-Cc-EEEEEcCCc-EEEEEEecCCE-EEEECC
Confidence 0124444444332 3344443 33 345677788887531 2 33 566666655 33334555565 999999
Q ss_pred CCCcCCCCCCChHHHHHHH
Q psy17159 278 PEYLSRPLRPSPPFLGLIL 296 (326)
Q Consensus 278 PE~~~~~~~~~~lf~~Fl~ 296 (326)
||+.. + ....++++|++
T Consensus 179 PE~~~-~-~g~~ll~~f~~ 195 (196)
T TIGR01855 179 PEKSG-K-TGLKLLENFLE 195 (196)
T ss_pred CccCc-H-hHHHHHHHHHh
Confidence 99874 2 34589999986
No 64
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=99.86 E-value=5.8e-21 Score=173.35 Aligned_cols=196 Identities=17% Similarity=0.219 Sum_probs=117.1
Q ss_pred ceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCC-
Q psy17159 45 TVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKR- 123 (326)
Q Consensus 45 ~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~- 123 (326)
+|||+|+ +++|++.++.++|+++|+++ ..+.. .+.|.++|+||||||++..
T Consensus 1 ~m~igVL----a~qG~~~e~~~aL~~lG~ev------~~v~~------------------~~~L~~~DgLILPGGfs~~~ 52 (248)
T PLN02832 1 MMAIGVL----ALQGSFNEHIAALRRLGVEA------VEVRK------------------PEQLEGVSGLIIPGGESTTM 52 (248)
T ss_pred CcEEEEE----eCCCchHHHHHHHHHCCCcE------EEeCC------------------HHHhccCCEEEeCCCHHHHH
Confidence 3689999 66688999999999988632 22221 1368899999999987642
Q ss_pred ----CCchHHHHHHHHHHcCCCEEEEehhHHHHHHHh------CcccccccCCcccccCCCCCCccCCeeeccCCCCCCC
Q psy17159 124 ----GLEGKIAACKWARENNKPFLGICLGLQAAVIEY------GRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGN 193 (326)
Q Consensus 124 ----~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~------g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~ 193 (326)
...++.+.|+.+.+.++|+||||+|||+|+... +...++..+..+.+....||.....--..+| |
T Consensus 53 ~~L~~~~gl~~~I~~~v~~g~PvLGiC~GmqlLa~~~~~~~~~~~~~lg~Ldi~v~RN~~g~qv~sfe~~l~ip-~---- 127 (248)
T PLN02832 53 AKLAERHNLFPALREFVKSGKPVWGTCAGLIFLAERAVGQKEGGQELLGGLDCTVHRNFFGSQINSFETELPVP-E---- 127 (248)
T ss_pred HHHHhhcchHHHHHHHHHcCCCEEEEChhHHHHHHHhcccccCCcceeCCccceEEecccCceeEeEEcCCcCC-c----
Confidence 123577888888888999999999999999753 2345677777766644444322110000011 0
Q ss_pred CCcceeecce-------eEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCC--CeEEEEE
Q psy17159 194 MGGTMRLGKH-------ETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKE--VRMEIAE 264 (326)
Q Consensus 194 ~~~~~~lg~~-------~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg--~~veaie 264 (326)
+||. ..++... +.+... +. . .+.-|+|.+.++. .-.+.|+++.| .++.+++
T Consensus 128 ------~gwn~~~~~~~~~vFira--p~i~~~-~~--~--v~~l~sy~~~~~~-------~~~~~a~~~y~~~~~~~aV~ 187 (248)
T PLN02832 128 ------LAASEGGPETFRAVFIRA--PAILSV-GP--G--VEVLAEYPLPSEK-------ALYSSSTDAEGRDKVIVAVK 187 (248)
T ss_pred ------cccccccccccceEEecC--CceEeC-CC--c--EEEEEEecccccc-------cccccccccccCCceEEEEE
Confidence 1222 1223321 111100 11 1 1233555443211 11234444433 2355555
Q ss_pred ECCCCeEEEEcccCCCcCCCCCCChHHHHHHHHHHh
Q psy17159 265 LRDHPYYVAVQFHPEYLSRPLRPSPPFLGLILAAAG 300 (326)
Q Consensus 265 ~~~~~~~~GvQFHPE~~~~~~~~~~lf~~Fl~~a~~ 300 (326)
.. + ++|+|||||++.+. ++.++|++.+..
T Consensus 188 qg--n-vlatqFHPEls~d~----rih~~Fl~~~~~ 216 (248)
T PLN02832 188 QG--N-LLATAFHPELTADT----RWHSYFVKMVSE 216 (248)
T ss_pred eC--C-EEEEEccCccCCcc----HHHHHHHHHHHH
Confidence 43 4 49999999999753 889999998764
No 65
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=99.86 E-value=8.1e-21 Score=166.43 Aligned_cols=175 Identities=18% Similarity=0.202 Sum_probs=111.3
Q ss_pred EEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCC---
Q psy17159 47 TIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKR--- 123 (326)
Q Consensus 47 ~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~--- 123 (326)
||+|+ .++|++.|..++|+++|.+ +..+.+ .++++++|+||||||++..
T Consensus 1 ~igvl----~~qg~~~e~~~~l~~~g~~------~~~v~~------------------~~~l~~~d~liipGG~~~~~~~ 52 (184)
T TIGR03800 1 KIGVL----ALQGAVREHARALEALGVE------GVEVKR------------------PEQLDEIDGLIIPGGESTTLSR 52 (184)
T ss_pred CEEEE----EccCCHHHHHHHHHHCCCE------EEEECC------------------hHHhccCCEEEECCCCHHHHHH
Confidence 58888 6678999999999998863 233332 1257899999999997653
Q ss_pred --CCchHHHHHHHHHHcCCCEEEEehhHHHHHHHhCc---ccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcce
Q psy17159 124 --GLEGKIAACKWARENNKPFLGICLGLQAAVIEYGR---SVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTM 198 (326)
Q Consensus 124 --~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~---~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~ 198 (326)
...++...|+++.+.++|+||||+|||+|+.++.. ..+|+.++.+.+.... .
T Consensus 53 l~~~~~l~~~i~~~~~~g~pilGIC~G~qlL~~~~~~~~~~~lg~~~~~v~~~~~g-----------------------~ 109 (184)
T TIGR03800 53 LLDKYGMFEPLRNFILSGLPVFGTCAGLIMLAKEIIGQKEGYLGLLDMTVERNAYG-----------------------R 109 (184)
T ss_pred HHHhccHHHHHHHHHHcCCcEEEECHHHHHHHhhhccCCCCccCcEEEEEEeeccC-----------------------C
Confidence 22356778888889999999999999999988622 1245444444332111 0
Q ss_pred eecceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEcccC
Q psy17159 199 RLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHP 278 (326)
Q Consensus 199 ~lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFHP 278 (326)
..+.++..+... ..+..+.. .. ....+.+..+ +++++++|++++ . ++|++.. ++ ||+||||
T Consensus 110 ~~~s~~~~l~~~-------~~~~~~~~-~~-----~~h~~~v~~l-p~~~~vla~~~~-~-~~a~~~~--~~-~gvQfHP 170 (184)
T TIGR03800 110 QVDSFEAEVDIK-------GVGDDPIT-GV-----FIRAPKIVSV-GNGVEILAKVGN-R-IVAVRQG--NI-LVSSFHP 170 (184)
T ss_pred ccccEEEEeecc-------cCCCCcce-EE-----EEcCCCcccC-CCCeEEEEEeCC-e-eEEEEeC--CE-EEEEeCC
Confidence 112222222210 00111110 11 1123356666 889999999765 4 6688644 44 9999999
Q ss_pred CCcCCCCCCChHHHHHH
Q psy17159 279 EYLSRPLRPSPPFLGLI 295 (326)
Q Consensus 279 E~~~~~~~~~~lf~~Fl 295 (326)
|.+.. .++++.|+
T Consensus 171 E~~~~----~~~~~~f~ 183 (184)
T TIGR03800 171 ELTDD----HRVHEYFL 183 (184)
T ss_pred ccCCC----chHHHHhh
Confidence 99743 37888886
No 66
>PRK05665 amidotransferase; Provisional
Probab=99.86 E-value=1.6e-20 Score=170.99 Aligned_cols=133 Identities=17% Similarity=0.196 Sum_probs=91.3
Q ss_pred hhcCCCEEEECCCCCCC-----CCchHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCC
Q psy17159 107 DFCKVDGIIVPGGFGKR-----GLEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHP 181 (326)
Q Consensus 107 ~l~~~dglilpGG~~~~-----~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~p 181 (326)
.++++||+||+||+... +...+.+.|+.+.+.++|+||||+|+|+|+.++|++|..-..+
T Consensus 54 ~~~~~dgiiitGs~~~v~~~~pwi~~l~~~i~~~~~~~~PilGIC~GhQlla~AlGG~V~~~~~G--------------- 118 (240)
T PRK05665 54 DDEKFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYERGDKLLGVCFGHQLLALLLGGKAERASQG--------------- 118 (240)
T ss_pred CcccCCEEEECCCCCCccccchHHHHHHHHHHHHHhcCCCEEEEeHHHHHHHHHhCCEEEeCCCC---------------
Confidence 46789999999997653 2345677888888899999999999999999999998332111
Q ss_pred eeeccCCCCCCCCCcceeecceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEE
Q psy17159 182 VVVYMPEHNPGNMGGTMRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRME 261 (326)
Q Consensus 182 lv~~~~~~~~~~~~~~~~lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~ve 261 (326)
...|.+.+.+... +.++... .. .....+.|+.. +..| ++|+.++|.++.+. ++
T Consensus 119 ----------------~e~G~~~~~~~~~-~~~~~~~-~~--~~~~~~~H~D~-----V~~L-P~ga~~La~s~~~~-~q 171 (240)
T PRK05665 119 ----------------WGVGIHRYQLAAH-APWMSPA-VT--ELTLLISHQDQ-----VTAL-PEGATVIASSDFCP-FA 171 (240)
T ss_pred ----------------cccceEEEEecCC-CccccCC-CC--ceEEEEEcCCe-----eeeC-CCCcEEEEeCCCCc-EE
Confidence 0123333333321 2222221 12 23334445433 4455 88999999999999 99
Q ss_pred EEEECCCCeEEEEcccCCCcCC
Q psy17159 262 IAELRDHPYYVAVQFHPEYLSR 283 (326)
Q Consensus 262 aie~~~~~~~~GvQFHPE~~~~ 283 (326)
+++..++ +||+|||||++..
T Consensus 172 ~~~~~~~--~~g~QfHPE~~~~ 191 (240)
T PRK05665 172 AYHIGDQ--VLCFQGHPEFVHD 191 (240)
T ss_pred EEEeCCC--EEEEecCCcCcHH
Confidence 9988764 5999999999763
No 67
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.86 E-value=9.4e-21 Score=166.29 Aligned_cols=138 Identities=22% Similarity=0.253 Sum_probs=96.0
Q ss_pred hhcCCCEEEECCCCCCC-C-----CchHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccC
Q psy17159 107 DFCKVDGIIVPGGFGKR-G-----LEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEH 180 (326)
Q Consensus 107 ~l~~~dglilpGG~~~~-~-----~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~ 180 (326)
.++++||||||||+... . .....++|+++.++++|+||||+|||+|+.++|+++.....+
T Consensus 43 ~~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~~pilgiC~G~q~l~~~lGG~v~~~~~~-------------- 108 (188)
T cd01741 43 DLDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAAGKPVLGICLGHQLLARALGGKVGRNPKG-------------- 108 (188)
T ss_pred CcccCCEEEECCCCccCCccCChHHHHHHHHHHHHHHCCCCEEEECccHHHHHHHhCCEEecCCCc--------------
Confidence 57899999999998654 1 134677888898999999999999999999999887432111
Q ss_pred CeeeccCCCCCCCCCcceeecceeEEEecCCC--chHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCC
Q psy17159 181 PVVVYMPEHNPGNMGGTMRLGKHETHFKPEHK--SKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEV 258 (326)
Q Consensus 181 plv~~~~~~~~~~~~~~~~lg~~~~~~~~~~~--s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~ 258 (326)
...|.+.+.+... + ..+.+.... .....+.|++.|. .+ +++++++|+++++.
T Consensus 109 -----------------~~~g~~~v~~~~~-~~~~~l~~~~~~--~~~v~~~H~~~v~-----~l-p~~~~~la~~~~~~ 162 (188)
T cd01741 109 -----------------WEIGWFPVTLTEA-GKADPLFAGLPD--EFPVFHWHGDTVV-----EL-PPGAVLLASSEACP 162 (188)
T ss_pred -----------------ceeEEEEEEeccc-cccCchhhcCCC--cceEEEEeccChh-----hC-CCCCEEeecCCCCC
Confidence 1124444444431 1 111111122 2345556666553 44 78999999999998
Q ss_pred eEEEEEECCCCeEEEEcccCCCcCCCCCCChHHHHHH
Q psy17159 259 RMEIAELRDHPYYVAVQFHPEYLSRPLRPSPPFLGLI 295 (326)
Q Consensus 259 ~veaie~~~~~~~~GvQFHPE~~~~~~~~~~lf~~Fl 295 (326)
+++++.+ .+ ++|+||||| ..+|++|+
T Consensus 163 -v~~~~~~-~~-~~g~QfHPE--------~~~~~~f~ 188 (188)
T cd01741 163 -NQAFRYG-DR-ALGLQFHPE--------ERLLRNFL 188 (188)
T ss_pred -cceEEec-CC-EEEEccCch--------HHHHhhhC
Confidence 9999987 34 499999999 46787774
No 68
>PRK07053 glutamine amidotransferase; Provisional
Probab=99.85 E-value=4.3e-20 Score=167.66 Aligned_cols=180 Identities=21% Similarity=0.189 Sum_probs=118.2
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCC--
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKR-- 123 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~-- 123 (326)
++|.|| .- .-..+..++...|+..|. .+.++.....+.. ...+.++|+|||+||+...
T Consensus 3 ~~ilvi-qh-~~~e~~g~i~~~L~~~g~----~~~v~~~~~~~~~--------------~~~~~~~d~lii~Ggp~~~~d 62 (234)
T PRK07053 3 KTAVAI-RH-VAFEDLGSFEQVLGARGY----RVRYVDVGVDDLE--------------TLDALEPDLLVVLGGPIGVYD 62 (234)
T ss_pred ceEEEE-EC-CCCCCChHHHHHHHHCCC----eEEEEecCCCccC--------------CCCccCCCEEEECCCCCCCCC
Confidence 467777 32 223567788888887775 3333333221110 1145689999999997532
Q ss_pred -----CCchHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcce
Q psy17159 124 -----GLEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTM 198 (326)
Q Consensus 124 -----~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~ 198 (326)
....+.++|+.+++.++|+||||+|||+|+.++|++|.. .. ..
T Consensus 63 ~~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~---~~-----------------------------~~ 110 (234)
T PRK07053 63 DELYPFLAPEIALLRQRLAAGLPTLGICLGAQLIARALGARVYP---GG-----------------------------QK 110 (234)
T ss_pred CCcCCcHHHHHHHHHHHHHCCCCEEEECccHHHHHHHcCCcEec---CC-----------------------------CC
Confidence 223567888988899999999999999999999999832 10 02
Q ss_pred eecceeEEEecC-CCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEccc
Q psy17159 199 RLGKHETHFKPE-HKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFH 277 (326)
Q Consensus 199 ~lg~~~~~~~~~-~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFH 277 (326)
++|+..+.+++. ..+.+..+. . .....|+|+..+ .+ +++.+++|+++.+. +++++..+ + +||+|||
T Consensus 111 e~G~~~i~~t~~g~~~pl~~~~-~--~~~~~~~H~d~~------~l-P~ga~~La~s~~~~-~qaf~~g~-~-~~g~QfH 177 (234)
T PRK07053 111 EIGWAPLTLTDAGRASPLRHLG-A--GTPVLHWHGDTF------DL-PEGATLLASTPACR-HQAFAWGN-H-VLALQFH 177 (234)
T ss_pred eEeEEEEEEeccccCChhhcCC-C--cceEEEEeCCEE------ec-CCCCEEEEcCCCCC-eeEEEeCC-C-EEEEeeC
Confidence 346665555442 012333332 2 244556665543 34 78999999999998 89999865 4 4999999
Q ss_pred CCCcCCCCCCChHHHHHHH
Q psy17159 278 PEYLSRPLRPSPPFLGLIL 296 (326)
Q Consensus 278 PE~~~~~~~~~~lf~~Fl~ 296 (326)
||.+. .++..++.
T Consensus 178 pE~~~------~~~~~w~~ 190 (234)
T PRK07053 178 PEARE------DRFEAWLI 190 (234)
T ss_pred ccCCH------HHHHHHHH
Confidence 99875 35555553
No 69
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.84 E-value=3e-20 Score=172.27 Aligned_cols=183 Identities=22% Similarity=0.256 Sum_probs=107.4
Q ss_pred HHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCC----CCchHHHHHHHHHH
Q psy17159 62 ASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKR----GLEGKIAACKWARE 137 (326)
Q Consensus 62 ~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~----~~~~~~~~i~~~~~ 137 (326)
.|.+++++.+|+ .|.+++++... . ...+.++.+||||+|||+.+. .......+++.+++
T Consensus 23 ~~Yv~~l~~aG~----~vvpi~~~~~~----------~---~l~~~l~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~ 85 (273)
T cd01747 23 ASYVKFLESAGA----RVVPIWINESE----------E---YYDKLFKSINGILFPGGAVDIDTSGYARTAKIIYNLALE 85 (273)
T ss_pred HHHHHHHHHCCC----eEEEEEeCCcH----------H---HHHHHHhhCCEEEECCCCCcCCccccchHHHHHHHHHHH
Confidence 357788888776 45566665310 1 123457899999999996432 12223445566665
Q ss_pred cC-----CCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcceeecceeEEEecCCC
Q psy17159 138 NN-----KPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHETHFKPEHK 212 (326)
Q Consensus 138 ~~-----~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~lg~~~~~~~~~~~ 212 (326)
.+ +|+||||+|||+|+.++|+++.-+.... ..| ...|+ . +... +.....+..-+.
T Consensus 86 ~~~~g~~~Pv~GiClG~QlL~~~~gg~~~~~~~~~-----~~~--~~~~l-~-~t~~-----------~~~s~lF~~~p~ 145 (273)
T cd01747 86 RNDAGDYFPVWGTCLGFELLTYLTSGETLLLEATE-----ATN--SALPL-N-FTED-----------ALQSRLFKRFPP 145 (273)
T ss_pred hhhcCCCCcEEEEcHHHHHHHHHhCCCccccCCCc-----ccc--ceEEE-E-Eccc-----------cccChhhhcCCH
Confidence 43 8999999999999999887642111110 000 01111 0 0000 000011111101
Q ss_pred chHHhhhCCCcceeeecceeeeeCCccccc---ccCCCeEEEEEcCC--CC-eEEEEEECCCCeEEEEcccCCCcCCCCC
Q psy17159 213 SKLKLLYGNKDKIEERHRHRYEVNKKYVPD---YEKHGFLFTGVDEK--EV-RMEIAELRDHPYYVAVQFHPEYLSRPLR 286 (326)
Q Consensus 213 s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~---l~~~gl~v~a~~~d--g~-~veaie~~~~~~~~GvQFHPE~~~~~~~ 286 (326)
+++..+ .. .....++|+|.+.++.++. | ...++++|++.| |. +|+++++++.|+ +|||||||....+-.
T Consensus 146 ~l~~~l-~~--~~~~~~~Hs~~v~~~~~~~~~~l-~~~~~vla~~~d~~g~~fis~ie~~~~pi-~gvQFHPEks~few~ 220 (273)
T cd01747 146 DLLKSL-AT--EPLTMNNHRYGISPENFTENGLL-SDFFNVLTTNDDWNGVEFISTVEAYKYPI-YGVQWHPEKNAFEWK 220 (273)
T ss_pred HHHHHH-hc--ccHHHhhcccccCHhhccccccc-ccceEEEEEEecCCCceEEEEEEecCCce-EEEecCCCccccccc
Confidence 222222 22 2356788999997765432 2 456899998765 44 789999999997 999999998766543
No 70
>PRK07567 glutamine amidotransferase; Provisional
Probab=99.84 E-value=6.5e-20 Score=167.33 Aligned_cols=132 Identities=19% Similarity=0.201 Sum_probs=89.2
Q ss_pred hhcCCCEEEECCCCCCCCCc---------h----HHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCC
Q psy17159 107 DFCKVDGIIVPGGFGKRGLE---------G----KIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQP 173 (326)
Q Consensus 107 ~l~~~dglilpGG~~~~~~~---------~----~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~ 173 (326)
.++.+|||||+||+.+.... . +.++++.+.+.++|+||||+|||+|+.++|+++.. ..+
T Consensus 48 ~~~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~Qlla~a~GG~V~~-~~g------- 119 (242)
T PRK07567 48 DLDDYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGVGTLGHHQGGVVDR-TYG------- 119 (242)
T ss_pred CHhhccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhHHHHHHHcCCEEec-CCC-------
Confidence 46789999999998653211 1 23455666688999999999999999999999842 111
Q ss_pred CCCCccCCeeeccCCCCCCCCCcceeecceeEEEecC--CCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEE
Q psy17159 174 PGQTLEHPVVVYMPEHNPGNMGGTMRLGKHETHFKPE--HKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFT 251 (326)
Q Consensus 174 ~g~~~~~plv~~~~~~~~~~~~~~~~lg~~~~~~~~~--~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~ 251 (326)
..+|.+.+.+... .+.++..+ +. .....++|++.| ..+ +++++++
T Consensus 120 ------------------------~e~G~~~v~l~~~g~~~~l~~~~-~~--~~~~~~~H~d~V-----~~l-p~~~~vl 166 (242)
T PRK07567 120 ------------------------EPVGAVTVSLTDAGRADPLLAGL-PD--TFTAFVGHKEAV-----SAL-PPGAVLL 166 (242)
T ss_pred ------------------------CcCccEEEEECCccCCChhhcCC-CC--ceEEEeehhhhh-----hhC-CCCCEEE
Confidence 0124444444331 02233222 22 244555666554 345 7899999
Q ss_pred EEcCCCCeEEEEEECCCCeEEEEcccCCCcC
Q psy17159 252 GVDEKEVRMEIAELRDHPYYVAVQFHPEYLS 282 (326)
Q Consensus 252 a~~~dg~~veaie~~~~~~~~GvQFHPE~~~ 282 (326)
|+++++. ++|+++.++ +||+|||||++.
T Consensus 167 A~s~~~~-vqa~~~~~~--~~gvQfHPE~~~ 194 (242)
T PRK07567 167 ATSPTCP-VQMFRVGEN--VYATQFHPELDA 194 (242)
T ss_pred EeCCCCC-EEEEEeCCC--EEEEEeCCcCCH
Confidence 9999998 999998764 499999999975
No 71
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=99.83 E-value=1e-19 Score=164.66 Aligned_cols=193 Identities=16% Similarity=0.237 Sum_probs=120.3
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCC-
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRG- 124 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~- 124 (326)
|||+|| +|+. ..+..++.++|+.+|+. +.+.+... ..++++|+||||||++...
T Consensus 1 ~~v~Vl-~~~G-~n~~~~~~~al~~~G~~----~~~i~~~~-------------------~~l~~~d~lilpGG~~~~d~ 55 (227)
T TIGR01737 1 MKVAVI-RFPG-TNCDRDTVYALRLLGVD----AEIVWYED-------------------GSLPDYDGVVLPGGFSYGDY 55 (227)
T ss_pred CeEEEE-eCCC-cCcHHHHHHHHHHCCCe----EEEEecCC-------------------CCCCCCCEEEECCCCccccc
Confidence 489999 8852 02246788999988763 33333321 1367899999999974311
Q ss_pred --------CchHHHHHHHHHHcCCCEEEEehhHHHHHHH--hCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCC
Q psy17159 125 --------LEGKIAACKWARENNKPFLGICLGLQAAVIE--YGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNM 194 (326)
Q Consensus 125 --------~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~--~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~ 194 (326)
.....++++.+.+.++|+||||.|+|+|+.+ +++.+.. ....++
T Consensus 56 ~~~~~~~~~~~~~~~l~~~~~~g~pvlgIC~G~QlLa~~GlL~G~l~~---n~~~~~----------------------- 109 (227)
T TIGR01737 56 LRAGAIAAASPIMQEVREFAEKGVPVLGICNGFQILVEAGLLPGALLP---NDSLRF----------------------- 109 (227)
T ss_pred ccccchhcchHHHHHHHHHHHcCCEEEEECHHHHHHHHcCCCCCceee---cCCCce-----------------------
Confidence 1235677888888999999999999999985 4443211 111111
Q ss_pred CcceeecceeEEEecCCCchHHhhhCCCccee---eecceeeeeCCcccccccCCCeEEEEE-c----------CCC--C
Q psy17159 195 GGTMRLGKHETHFKPEHKSKLKLLYGNKDKIE---ERHRHRYEVNKKYVPDYEKHGFLFTGV-D----------EKE--V 258 (326)
Q Consensus 195 ~~~~~lg~~~~~~~~~~~s~l~~~~~~~~~v~---~~h~h~~~vn~~~v~~l~~~gl~v~a~-~----------~dg--~ 258 (326)
...+..+.+... ++++.+.+.....+. +...++|.++++.+.+|...+..+.-+ + ++| .
T Consensus 110 ----~~~~~~~~v~~~-~~~~~~~~~~g~~~~~pi~H~eG~y~~~~~~l~~l~~~~~i~~~y~d~~g~~~~~~npngs~~ 184 (227)
T TIGR01737 110 ----ICRWVYLRVENA-DTIFTKNYKKGEVIRIPIAHGEGRYYADDETLARLESNDQVVFRYCDEDGDVAEEANPNGSVG 184 (227)
T ss_pred ----EEEeEEEEECCC-CChhhccCCCCCEEEEEeEcCCcCeEcCHHHHHHHHHCCcEEEEEECCCCCCCCCCCCCCCHH
Confidence 111222222222 455544443222232 244568888888777775555433332 2 444 2
Q ss_pred eEEEEEECCCCeEEEEcccCCCc-----CCCCCCChHHHHHHH
Q psy17159 259 RMEIAELRDHPYYVAVQFHPEYL-----SRPLRPSPPFLGLIL 296 (326)
Q Consensus 259 ~veaie~~~~~~~~GvQFHPE~~-----~~~~~~~~lf~~Fl~ 296 (326)
.|+++.+++.++ +|+|||||+. .++ .+..+|++|++
T Consensus 185 ~i~~i~~~~~~~-~g~~~HpE~~~~~~~~~~-~g~~~~~~~~~ 225 (227)
T TIGR01737 185 NIAGIVNERGNV-LGMMPHPERASEKLLGGD-DGLKLFESLVE 225 (227)
T ss_pred HHcccCCCCCCE-EEEecCchhhcccccCCc-ccHHHHHHHHh
Confidence 488899999997 9999999998 444 34689999974
No 72
>KOG1224|consensus
Probab=99.82 E-value=8.8e-20 Score=175.72 Aligned_cols=200 Identities=19% Similarity=0.163 Sum_probs=122.4
Q ss_pred CceEEEEEcccCCCchhHHHHHHHHHHHhhhcC--CceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCC
Q psy17159 44 KTVTIGLVGKYTKFEDCYASLTRALEHASYHSN--RHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFG 121 (326)
Q Consensus 44 ~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~--~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~ 121 (326)
.+++|.+| |+|+|+..++.++-...+ ..|.++..+. --++.|+...+ +-.+|+||+++|||
T Consensus 13 ~rl~~LlI-------D~YDSyTfNiy~ll~~~~~vp~V~~vh~~~---------~~~d~~~~l~q-~~~FDaIVVgPGPG 75 (767)
T KOG1224|consen 13 PRLRTLLI-------DNYDSYTFNIYQLLSTINGVPPVVIVHDEW---------TWEDAYHYLYQ-DVAFDAIVVGPGPG 75 (767)
T ss_pred hheeEEEE-------ecccchhhhHHHHHHHhcCCCcEEEEeccc---------cCHHHHHHHhh-ccccceEEecCCCC
Confidence 34789999 688888777777654322 1233322221 01333332221 13599999999999
Q ss_pred CCCCchHHHHHHHHHH--cCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCccee
Q psy17159 122 KRGLEGKIAACKWARE--NNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMR 199 (326)
Q Consensus 122 ~~~~~~~~~~i~~~~~--~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~ 199 (326)
.|.-...+..+.+.+. +++||||||||+|.|+.+.|+.+.... .| .|+
T Consensus 76 ~P~~a~d~gI~~rl~~~~~~iPilGICLGfQal~l~hGA~v~~~n---------------~p------~HG--------- 125 (767)
T KOG1224|consen 76 SPMCAADIGICLRLLLECRDIPILGICLGFQALGLVHGAHVVHAN---------------EP------VHG--------- 125 (767)
T ss_pred CCCcHHHHHHHHHHHHhcCCCceeeeehhhHhHhhhcccceecCC---------------Cc------ccc---------
Confidence 9832222233322222 469999999999999999998883211 11 121
Q ss_pred ecceeEEEecCCCchHHhhh---CCCcceeeecceeeeeCCcccccccCCCeEEEEEcC--CCCeEEEEEECCCCeEEEE
Q psy17159 200 LGKHETHFKPEHKSKLKLLY---GNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDE--KEVRMEIAELRDHPYYVAV 274 (326)
Q Consensus 200 lg~~~~~~~~~~~s~l~~~~---~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~--dg~~veaie~~~~~~~~Gv 274 (326)
...-+-.+. +-++.++. ... +-.+|| |+..+|+.-++ -+.++++.. +|.+++++.+.+.|+ ||+
T Consensus 126 --rvs~i~~~~-~~~f~gi~sg~~~~-fK~~RY-HSL~in~~pid-----~l~il~t~~ddng~ilMsi~~~~fPh-fG~ 194 (767)
T KOG1224|consen 126 --RVSGIEHDG-NILFSGIPSGRNSD-FKVVRY-HSLIINSLPID-----LLPILWTIYDDNGHILMSIMHSSFPH-FGL 194 (767)
T ss_pred --eeeeEEecC-cEEEccCCCCCccc-ceeEEe-EEEEecCCchh-----hhcceeEeecCCceEEEEeeccCCCc-cce
Confidence 111111111 11222233 222 455666 78888864333 445666654 455899999999999 999
Q ss_pred cccCCCcCCCCCCChHHHHHHHHHHhhh
Q psy17159 275 QFHPEYLSRPLRPSPPFLGLILAAAGKL 302 (326)
Q Consensus 275 QFHPE~~~~~~~~~~lf~~Fl~~a~~~~ 302 (326)
|||||+.++..+ ..||+||+..+..+.
T Consensus 195 qyHPES~~s~~g-~~lfkNFl~lt~~~n 221 (767)
T KOG1224|consen 195 QYHPESIASTYG-SQLFKNFLDLTVNYN 221 (767)
T ss_pred eeChHHhhhhhh-HHHHHHHHHhhccCc
Confidence 999999998765 499999999876433
No 73
>KOG0370|consensus
Probab=99.81 E-value=4.1e-19 Score=179.87 Aligned_cols=206 Identities=20% Similarity=0.222 Sum_probs=148.6
Q ss_pred CCCCCCeeeCCCCCcccccchhhhhcCCCceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCC
Q psy17159 16 HVTPENVIFNPDVKPIYKVRMLRIDRLNKTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKT 95 (326)
Q Consensus 16 ~~~~~~v~~~~~~~~~y~~p~~~~~~~~~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~ 95 (326)
+....|.++..+++..+.+-. .+..+|+.+ |+|. ....++.|...|+++ .++..+.
T Consensus 149 dpn~~nLvs~VS~Kep~~y~~------Gk~~~I~ai-DcG~----K~N~IRcL~~RGa~v----tVvPw~~--------- 204 (1435)
T KOG0370|consen 149 DPNKRNLVSQVSTKEPKVYGD------GKSLRILAI-DCGL----KYNQIRCLVKRGAEV----TVVPWDY--------- 204 (1435)
T ss_pred CCCcccchhhheeccceEEcC------CcccEEEEc-ccCc----hHHHHHHHHHhCceE----EEecCCc---------
Confidence 344445555555555544442 556899999 9875 778899999999843 3332221
Q ss_pred CCchhhcchhhhhcCCCEEEECCCCCCCCC-chHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCC
Q psy17159 96 GNMAEYHKTWSDFCKVDGIIVPGGFGKRGL-EGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPP 174 (326)
Q Consensus 96 ~~~~~~~~~~~~l~~~dglilpGG~~~~~~-~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~ 174 (326)
+. .-.++|||+|++|||+|.. ...+.-+++.++.++|++|||+|||+|+.+.|++..++.-++.
T Consensus 205 --~i-------~~~~yDGlflSNGPGdPe~~~~~v~~vr~lL~~~~PvfGIClGHQllA~AaGakT~KmKyGNR------ 269 (1435)
T KOG0370|consen 205 --PI-------AKEEYDGLFLSNGPGDPELCPLLVQNVRELLESNVPVFGICLGHQLLALAAGAKTYKMKYGNR------ 269 (1435)
T ss_pred --cc-------cccccceEEEeCCCCCchhhHHHHHHHHHHHhCCCCeEEEehhhHHHHHhhCCceEEeecccc------
Confidence 00 1138999999999999874 3466777888887899999999999999999999988765532
Q ss_pred CCCccCCeeeccCCCCCCCCCcceeecceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEc
Q psy17159 175 GQTLEHPVVVYMPEHNPGNMGGTMRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVD 254 (326)
Q Consensus 175 g~~~~~plv~~~~~~~~~~~~~~~~lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~ 254 (326)
| .+.|. .+ . .-|+ ...+.++|+|.|+++.+ +.+++.+-.+
T Consensus 270 G--hNiP~-~~----------------------~---------~tGr--c~ITSQNHGYAVD~~tL----p~gWk~lFvN 309 (1435)
T KOG0370|consen 270 G--HNIPC-TC----------------------R---------ATGR--CFITSQNHGYAVDPATL----PAGWKPLFVN 309 (1435)
T ss_pred C--CCccc-ee----------------------c---------cCce--EEEEecCCceeeccccc----cCCCchheee
Confidence 2 33341 10 0 0122 23356779999997654 4688888887
Q ss_pred C-CCCeEEEEEECCCCeEEEEcccCCCcCCCCCCChHHHHHHHHHHhhh
Q psy17159 255 E-KEVRMEIAELRDHPYYVAVQFHPEYLSRPLRPSPPFLGLILAAAGKL 302 (326)
Q Consensus 255 ~-dg~~veaie~~~~~~~~GvQFHPE~~~~~~~~~~lf~~Fl~~a~~~~ 302 (326)
. |+. -|++.|...|| +.+|||||....|.+..-+|..|+....+.+
T Consensus 310 ~NDgS-NEGI~Hss~P~-fSvQFHPEat~GP~DTeyLFDiFi~lvkk~k 356 (1435)
T KOG0370|consen 310 ANDGS-NEGIMHSSKPF-FSVQFHPEATPGPHDTEYLFDVFIELVKKSK 356 (1435)
T ss_pred cccCC-CceEecCCCCc-eeeecCCcCCCCCcchHHHHHHHHHHHHHHh
Confidence 5 666 89999999998 9999999999999887789999998886655
No 74
>PRK08250 glutamine amidotransferase; Provisional
Probab=99.81 E-value=1.4e-18 Score=157.93 Aligned_cols=140 Identities=18% Similarity=0.168 Sum_probs=95.8
Q ss_pred hhcCCCEEEECCCCCCCC--------C--chHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCC
Q psy17159 107 DFCKVDGIIVPGGFGKRG--------L--EGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQ 176 (326)
Q Consensus 107 ~l~~~dglilpGG~~~~~--------~--~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~ 176 (326)
.++++|+|||+||+.... . ....++|+.+.+.++|+||||+|+|+|+.++|++|..-..
T Consensus 42 ~~~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~~----------- 110 (235)
T PRK08250 42 NADGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLINQAIKAGKAVIGVCLGAQLIGEALGAKYEHSPE----------- 110 (235)
T ss_pred CccccCEEEECCCCCChhhccccccccchHHHHHHHHHHHHcCCCEEEEChhHHHHHHHhCceeccCCC-----------
Confidence 457899999999976421 1 2346778888899999999999999999999999832110
Q ss_pred CccCCeeeccCCCCCCCCCcceeecceeEEEecCCC--chHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEc
Q psy17159 177 TLEHPVVVYMPEHNPGNMGGTMRLGKHETHFKPEHK--SKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVD 254 (326)
Q Consensus 177 ~~~~plv~~~~~~~~~~~~~~~~lg~~~~~~~~~~~--s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~ 254 (326)
..+|++.+.+++. + ..+...++.. ....|+|+..+ .+ +++++++|++
T Consensus 111 ---------------------~e~G~~~v~lt~~-g~~d~l~~~~~~~--~~v~~~H~d~~------~l-P~~a~~LA~s 159 (235)
T PRK08250 111 ---------------------KEIGYFPITLTEA-GLKDPLLSHFGST--LTVGHWHNDMP------GL-TDQAKVLATS 159 (235)
T ss_pred ---------------------CceeEEEEEEccc-cccCchhhcCCCC--cEEEEEeccee------cC-CCCCEEEECC
Confidence 0135555555432 1 1222223332 33445555432 34 7899999999
Q ss_pred CCCCeEEEEEECCCCeEEEEcccCCCcCCCCCCChHHHHHHHH
Q psy17159 255 EKEVRMEIAELRDHPYYVAVQFHPEYLSRPLRPSPPFLGLILA 297 (326)
Q Consensus 255 ~dg~~veaie~~~~~~~~GvQFHPE~~~~~~~~~~lf~~Fl~~ 297 (326)
+.+. +++++..++ +||+|||||.+. .++..+++.
T Consensus 160 ~~~~-~qa~~~~~~--~~g~QfHPE~~~------~~~~~~~~~ 193 (235)
T PRK08250 160 EGCP-RQIVQYSNL--VYGFQCHMEFTV------EAVELLIAH 193 (235)
T ss_pred CCCC-ceEEEeCCC--EEEEeecCcCCH------HHHHHHHHh
Confidence 9998 999998765 499999999864 456666553
No 75
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=99.80 E-value=4.2e-19 Score=155.52 Aligned_cols=173 Identities=19% Similarity=0.250 Sum_probs=106.5
Q ss_pred EEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCC----
Q psy17159 48 IGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKR---- 123 (326)
Q Consensus 48 I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~---- 123 (326)
|+|+ .+++++.+..++|+++|.+ +..+.+ .+.++++|+||||||+...
T Consensus 1 igvl----~~qg~~~e~~~~l~~~g~~------v~~v~~------------------~~~l~~~dgiii~Gg~~~~~~~~ 52 (183)
T cd01749 1 IGVL----ALQGDFREHIRALERLGVE------VIEVRT------------------PEDLEGIDGLIIPGGESTTIGKL 52 (183)
T ss_pred CEEE----EecCCcHHHHHHHHHCCCe------EEEECC------------------HHHhccCCEEEECCchHHHHHHH
Confidence 4555 4567788888889888763 233332 1257889999999997431
Q ss_pred -CCchHHHHHHHHHHcCCCEEEEehhHHHHHHHhCc----ccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcce
Q psy17159 124 -GLEGKIAACKWARENNKPFLGICLGLQAAVIEYGR----SVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTM 198 (326)
Q Consensus 124 -~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~----~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~ 198 (326)
......+.|+++.+.++|+||||+|||+|+.++++ ..+|+.+..+.+.... .
T Consensus 53 ~~~~~~~~~i~~~~~~g~PvlGiC~G~qlL~~~~~~~~~~~glG~~~~~v~~~~~g-----------------------~ 109 (183)
T cd01749 53 LRRTGLLDPLREFIRAGKPVFGTCAGLILLAKEVEDQGGQPLLGLLDITVRRNAFG-----------------------R 109 (183)
T ss_pred HHhCCHHHHHHHHHHcCCeEEEECHHHHHHHHHhcccCCCCccCceeEEEEeeccc-----------------------c
Confidence 22345677888889999999999999999998875 4566665554332111 0
Q ss_pred eecceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEcccC
Q psy17159 199 RLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHP 278 (326)
Q Consensus 199 ~lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFHP 278 (326)
.+|+....+.. . -.+.. .....+.|.. .+..+ +++++++|.++++ ++|++.. ++ ||+||||
T Consensus 110 ~~g~~~~~l~~------~-~~~~~-~~~~~~~h~~-----~v~~~-p~~~~~la~~~~~--~~a~~~~--~~-~g~qfHP 170 (183)
T cd01749 110 QVDSFEADLDI------P-GLGLG-PFPAVFIRAP-----VIEEV-GPGVEVLAEYDGK--IVAVRQG--NV-LATSFHP 170 (183)
T ss_pred ccceEEEcCCC------C-cCCCC-ccEEEEEECc-----EEEEc-CCCcEEEEecCCE--EEEEEEC--CE-EEEEcCC
Confidence 01111111110 0 00111 1222333432 34455 7899999998654 4577754 44 9999999
Q ss_pred CCcCCCCCCChHHHHH
Q psy17159 279 EYLSRPLRPSPPFLGL 294 (326)
Q Consensus 279 E~~~~~~~~~~lf~~F 294 (326)
|.+.. .++++.|
T Consensus 171 E~~~~----~~~~~~f 182 (183)
T cd01749 171 ELTDD----TRIHEYF 182 (183)
T ss_pred ccCCC----cchhhhh
Confidence 99853 2555555
No 76
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=99.78 E-value=1.4e-18 Score=148.10 Aligned_cols=182 Identities=21% Similarity=0.274 Sum_probs=118.6
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCC--
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKR-- 123 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~-- 123 (326)
|||||+ ++||....+.++|++++ .+++.++.. .++|+.+||||||||.++.
T Consensus 1 m~IGVL----alQG~v~EH~~~l~~~~-----~~e~~~Vk~------------------~~dL~~~d~LIiPGGESTTi~ 53 (194)
T COG0311 1 MKIGVL----ALQGAVEEHLEALEKAG-----GAEVVEVKR------------------PEDLEGVDGLIIPGGESTTIG 53 (194)
T ss_pred CeEEEE----EecccHHHHHHHHHhhc-----CCceEEEcC------------------HHHhccCcEEEecCccHHHHH
Confidence 589999 66788999999999996 123445542 3489999999999998874
Q ss_pred ---CCchHHHHHHHHHHcCCCEEEEehhHHHHHHHhC----cccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCc
Q psy17159 124 ---GLEGKIAACKWARENNKPFLGICLGLQAAVIEYG----RSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGG 196 (326)
Q Consensus 124 ---~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g----~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~ 196 (326)
...++.+.|++..++++|+||+|.||.+|+.+.- ...||+.|..+.+...+.|.....
T Consensus 54 rL~~~~gl~e~l~~~~~~G~Pv~GTCAGlIlLakei~~~~~~~~Lg~mdi~V~RNAfGRQ~dSFe--------------- 118 (194)
T COG0311 54 RLLKRYGLLEPLREFIADGLPVFGTCAGLILLAKEILDGPEQPLLGLLDVTVRRNAFGRQVDSFE--------------- 118 (194)
T ss_pred HHHHHcCcHHHHHHHHHcCCceEEechhhhhhhhhhcCCCCCcccceEEEEEEccccccccccce---------------
Confidence 2357888999999999999999999999996532 245788888887776543321111
Q ss_pred ceeecceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEcc
Q psy17159 197 TMRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQF 276 (326)
Q Consensus 197 ~~~lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQF 276 (326)
.++.+.. .+... . -+..-+....+.+. .++.+++|+-++ . +-|+ ++.++ +|+-|
T Consensus 119 ------~~~di~~---------~~~~~-~----~~avFIRAP~I~~v-g~~V~vLa~l~~-~-iVav--~qgn~-LatsF 172 (194)
T COG0311 119 ------TELDIEG---------FGLPF-P----FPAVFIRAPVIEEV-GDGVEVLATLDG-R-IVAV--KQGNI-LATSF 172 (194)
T ss_pred ------eeEEeec---------ccCCC-c----ceEEEEEcceeehh-cCcceEeeeeCC-E-EEEE--EeCCE-EEEec
Confidence 0011110 01100 0 00011112234454 457999998755 4 4344 44465 99999
Q ss_pred cCCCcCCCCCCChHHHHHHH
Q psy17159 277 HPEYLSRPLRPSPPFLGLIL 296 (326)
Q Consensus 277 HPE~~~~~~~~~~lf~~Fl~ 296 (326)
|||.+.+. +.|.+|.+++.
T Consensus 173 HPELT~D~-r~Heyf~~~v~ 191 (194)
T COG0311 173 HPELTDDT-RLHEYFLDMVL 191 (194)
T ss_pred CccccCCc-cHHHHHHHHhh
Confidence 99999764 56676665543
No 77
>KOG0623|consensus
Probab=99.78 E-value=6e-19 Score=162.45 Aligned_cols=192 Identities=22% Similarity=0.288 Sum_probs=133.2
Q ss_pred EEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECC-C-CCCC-
Q psy17159 47 TIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPG-G-FGKR- 123 (326)
Q Consensus 47 ~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpG-G-~~~~- 123 (326)
-+.++ ||++ ||.+|+.++|+|+|+++. -+. +| .++.++|.||+|| | +|..
T Consensus 3 vv~~l-d~~a--gn~~si~nal~hlg~~i~------~v~-----------~P-------~DI~~a~rLIfPGVGnfg~~~ 55 (541)
T KOG0623|consen 3 VVTLL-DYGA--GNVRSIRNALRHLGFSIK------DVQ-----------TP-------GDILNADRLIFPGVGNFGPAM 55 (541)
T ss_pred eEEEE-ecCC--ccHHHHHHHHHhcCceee------ecc-----------Cc-------hhhccCceEeecCcccchHHH
Confidence 36788 9999 999999999999998531 111 22 3688999999999 4 3321
Q ss_pred ---CCchHHHHHHHHHHcCCCEEEEehhHHHHHH---HhC-cccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCc
Q psy17159 124 ---GLEGKIAACKWARENNKPFLGICLGLQAAVI---EYG-RSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGG 196 (326)
Q Consensus 124 ---~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~---~~g-~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~ 196 (326)
...+..+.+++.++.++|++|||+|+|+|.. +.+ .+.||..++.+.+|+.. ..+ +.+
T Consensus 56 D~L~~~Gf~eplr~YiesgkPfmgicvGlQaLF~gSvE~p~skGLgvipg~v~RFD~s----~k~-VPh----------- 119 (541)
T KOG0623|consen 56 DVLNRTGFAEPLRKYIESGKPFMGICVGLQALFDGSVENPPSKGLGVIPGIVGRFDAS----AKI-VPH----------- 119 (541)
T ss_pred HHHhhhhhHHHHHHHHhcCCCeEeehhhHHHHhcccccCCCcCcccccccceecccCC----CCc-CCc-----------
Confidence 2357888999999999999999999999984 322 56789999999999764 222 222
Q ss_pred ceeecceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCC--eEEEEEECCCCeEEEE
Q psy17159 197 TMRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEV--RMEIAELRDHPYYVAV 274 (326)
Q Consensus 197 ~~~lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~--~veaie~~~~~~~~Gv 274 (326)
+||..+.+.. ++.+++..+. -..++.|+| .|++.-..+++++|++ |+...|. +|.+|. .+++ +++
T Consensus 120 ---IGWNsc~v~s--d~effg~~p~---~~~YFVHSy-l~~ek~~~len~~wki-at~kYG~E~Fi~ai~--knN~-~At 186 (541)
T KOG0623|consen 120 ---IGWNSCQVGS--DSEFFGDVPN---RHVYFVHSY-LNREKPKSLENKDWKI-ATCKYGSESFISAIR--KNNV-HAT 186 (541)
T ss_pred ---ccccccccCC--cccccccCCC---ceEEEEeee-cccccccCCCCCCceE-eeeccCcHHHHHHHh--cCce-eeE
Confidence 4666665443 5555544332 234566787 3444334555778886 5555553 555554 3344 999
Q ss_pred cccCCCcCCCCCCChHHHHHHH
Q psy17159 275 QFHPEYLSRPLRPSPPFLGLIL 296 (326)
Q Consensus 275 QFHPE~~~~~~~~~~lf~~Fl~ 296 (326)
|||||.+... +...+++|+.
T Consensus 187 QFHPEKSG~a--GL~vl~~FL~ 206 (541)
T KOG0623|consen 187 QFHPEKSGEA--GLSVLRRFLH 206 (541)
T ss_pred ecccccccch--hHHHHHHHHh
Confidence 9999998764 3589999998
No 78
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.77 E-value=3.2e-18 Score=148.04 Aligned_cols=169 Identities=14% Similarity=0.161 Sum_probs=110.3
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCC--
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKR-- 123 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~-- 123 (326)
+||+|+ +++|...+..++|+++|++ +..+. + .+.++++|+||||||++..
T Consensus 3 ~~igVL----alqG~~~Eh~~al~~lG~~------v~~v~-----------~-------~~~l~~~D~LILPGG~~t~~~ 54 (179)
T PRK13526 3 QKVGVL----AIQGGYQKHADMFKSLGVE------VKLVK-----------F-------NNDFDSIDRLVIPGGESTTLL 54 (179)
T ss_pred cEEEEE----ECCccHHHHHHHHHHcCCc------EEEEC-----------C-------HHHHhCCCEEEECCChHHHHH
Confidence 689999 5567788899999988763 12222 1 2368899999999997654
Q ss_pred ---CCchHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcceee
Q psy17159 124 ---GLEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRL 200 (326)
Q Consensus 124 ---~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~l 200 (326)
...++.+.|+++.+ ++|+||||+|||+|+.. ...||+.++.+.++..+.|.. ..+.++.
T Consensus 55 ~ll~~~~l~~~Ik~~~~-~kpilGICaG~qlL~~~--s~~Lg~idg~V~Rn~~Grq~~--sf~~~~~------------- 116 (179)
T PRK13526 55 NLLNKHQIFDKLYNFCS-SKPVFGTCAGSIILSKG--EGYLNLLDLEVQRNAYGRQVD--SFVADIS------------- 116 (179)
T ss_pred HHhhhcCcHHHHHHHHc-CCcEEEEcHHHHHHHcc--CCCCCCccEEEEEcCCCCccc--eeeeecC-------------
Confidence 12457888888764 78999999999999985 367899999888886643211 1111100
Q ss_pred cceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEcccCCC
Q psy17159 201 GKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPEY 280 (326)
Q Consensus 201 g~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFHPE~ 280 (326)
.+ +. + . +..-+...++.+. +++.+++|+-+ +. +-+++ +.+. +|+-||||.
T Consensus 117 --------~~---------~~-~-----~-~~vFiRAP~i~~~-~~~v~vla~~~-~~-~v~v~--q~~~-l~~~FHPEl 166 (179)
T PRK13526 117 --------FN---------DK-N-----I-TGVFIRAPKFIVV-GNQVDILSKYQ-NS-PVLLR--QANI-LVSSFHPEL 166 (179)
T ss_pred --------cC---------Cc-e-----E-EEEEEcCceEeEc-CCCcEEEEEEC-CE-EEEEE--ECCE-EEEEeCCcc
Confidence 00 00 0 0 1112223345555 78999999885 44 44444 4454 999999999
Q ss_pred cCCCCCCChHH
Q psy17159 281 LSRPLRPSPPF 291 (326)
Q Consensus 281 ~~~~~~~~~lf 291 (326)
+.+ .+.|++|
T Consensus 167 t~d-~r~h~~f 176 (179)
T PRK13526 167 TQD-PTVHEYF 176 (179)
T ss_pred CCC-chHHHHH
Confidence 864 3445544
No 79
>KOG1622|consensus
Probab=99.75 E-value=3.4e-18 Score=162.29 Aligned_cols=180 Identities=19% Similarity=0.229 Sum_probs=115.7
Q ss_pred eEEEEEcccCCCchhHHH-HHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCC
Q psy17159 46 VTIGLVGKYTKFEDCYAS-LTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGK 122 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~S-i~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~ 122 (326)
-+|+|+ |||+ .|.- +.+.++....... +...+ .+ ...+ -.+-||||+|||-+
T Consensus 17 d~i~iL-D~Ga---QY~~~I~RrvRel~v~se----~~p~~-----------t~------~~~i~~~~~rgiIiSGGP~S 71 (552)
T KOG1622|consen 17 DTILIL-DFGA---QYGKVIDRRVRELNVQSE----ILPLT-----------TP------AKTITEYGPRGIIISGGPNS 71 (552)
T ss_pred ceEEEE-eccc---hhhHHHHHHHHHHhhhhh----hccCC-----------Ch------hhhhhcCCceEEEEeCCCCc
Confidence 379999 9997 4444 4556665544221 11111 11 1123 47899999999865
Q ss_pred CCCc---hHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCccee
Q psy17159 123 RGLE---GKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMR 199 (326)
Q Consensus 123 ~~~~---~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~ 199 (326)
.... ..... ..+-++|+||||+|||+|+..+|+.|.. +.+++.
T Consensus 72 Vya~dAP~~dp~---if~~~vpvLGICYGmQ~i~~~~Gg~V~~---~~~RE~---------------------------- 117 (552)
T KOG1622|consen 72 VYAEDAPSFDPA---IFELGVPVLGICYGMQLINKLNGGTVVK---GMVRED---------------------------- 117 (552)
T ss_pred cccCcCCCCChh---HhccCCcceeehhHHHHHHHHhCCcccc---ccccCC----------------------------
Confidence 3211 11122 2356899999999999999999999842 222222
Q ss_pred ecceeEEEecCCCchHHhhhCCCcc--eeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEccc
Q psy17159 200 LGKHETHFKPEHKSKLKLLYGNKDK--IEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFH 277 (326)
Q Consensus 200 lg~~~~~~~~~~~s~l~~~~~~~~~--v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFH 277 (326)
|..++...+. ..+|.+..+.. . ++..|..+ +..+ +.++++.|++.+.. +.++.+..++. ||+|||
T Consensus 118 -G~~eI~v~~~-~~lF~~~~~~~-~~~VlltHgds-------l~~v-~~g~kv~a~s~n~~-va~i~~e~kki-yglqfh 184 (552)
T KOG1622|consen 118 -GEDEIEVDDS-VDLFSGLHKTE-FMTVLLTHGDS-------LSKV-PEGFKVVAFSGNKP-VAGILNELKKI-YGLQFH 184 (552)
T ss_pred -CCceEEcCch-hhhhhhhcccc-eeeeeeccccc-------hhhc-cccceeEEeecCcc-eeeehhhhhhh-hcCCCC
Confidence 2222222221 23444444332 3 66666543 5565 78999999998877 88888888886 999999
Q ss_pred CCCcCCCCCCChHHHHHHHHH
Q psy17159 278 PEYLSRPLRPSPPFLGLILAA 298 (326)
Q Consensus 278 PE~~~~~~~~~~lf~~Fl~~a 298 (326)
||...++.+ ..+++||+-..
T Consensus 185 pEV~~t~~g-~~ll~nFl~~v 204 (552)
T KOG1622|consen 185 PEVTLTPNG-KELLKNFLFDV 204 (552)
T ss_pred CcccccCch-hHHHHHHHHHH
Confidence 999999865 48999999443
No 80
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=99.62 E-value=8.5e-16 Score=132.54 Aligned_cols=174 Identities=18% Similarity=0.206 Sum_probs=103.7
Q ss_pred CCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCC-----CCchHHH
Q psy17159 56 KFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKR-----GLEGKIA 130 (326)
Q Consensus 56 ~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~-----~~~~~~~ 130 (326)
+++|++....+.|+++|.+. +.+. ..++|+++||||||||.++. ...++.+
T Consensus 3 ALQG~~~EH~~~l~~lg~~~------~~Vr------------------~~~dL~~~dgLIiPGGESTti~~ll~~~gL~~ 58 (188)
T PF01174_consen 3 ALQGAFREHIRMLERLGAEV------VEVR------------------TPEDLEGLDGLIIPGGESTTIGKLLRRYGLFE 58 (188)
T ss_dssp SSSSSHHHHHHHHHHTTSEE------EEE-------------------SGGGGTT-SEEEE-SS-HHHHHHHHHHTTHHH
T ss_pred ccccChHHHHHHHHHcCCCe------EEeC------------------CHHHHccCCEEEECCCcHHHHHHHHHHcCCHH
Confidence 57889999999999998742 2332 13478999999999998763 2357889
Q ss_pred HHHHHHHcC-CCEEEEehhHHHHHHHh---CcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcceeecceeEE
Q psy17159 131 ACKWARENN-KPFLGICLGLQAAVIEY---GRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHETH 206 (326)
Q Consensus 131 ~i~~~~~~~-~PvLGIClG~QlL~~~~---g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~lg~~~~~ 206 (326)
.|+++...+ +|+||+|.||.+|+... +...||+.|..+.+...+.|.. .+. ..
T Consensus 59 ~l~~~~~~g~~Pv~GTCAGlIlLa~~v~~~~q~~Lg~ldi~V~RNafGrQ~~--SFe---------------------~~ 115 (188)
T PF01174_consen 59 PLREFIRSGSKPVWGTCAGLILLAKEVEGQGQPLLGLLDITVRRNAFGRQLD--SFE---------------------AD 115 (188)
T ss_dssp HHHHHHHTT--EEEEETHHHHHHEEEECSSCCTSS--EEEEEETTTTCSSSC--EEE---------------------EE
T ss_pred HHHHHHHcCCCceeehhHHHHHhhhhhhhcccccccceeEEEEccccccchh--cEE---------------------EE
Confidence 999998887 99999999999999643 3456888888888776653311 100 01
Q ss_pred EecCCCchHHhhhCCCcceeeecceeeeeCCccccccc-CCCeEEEEEcCCCCeEEEEEECCCCeEEEEcccCCCcCCCC
Q psy17159 207 FKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYE-KHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPEYLSRPL 285 (326)
Q Consensus 207 ~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~-~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFHPE~~~~~~ 285 (326)
+..+ + .+. ++. ..-+...++.++. +++.++++..+ |. +-+++ +.+ ++++-||||.+.+..
T Consensus 116 l~i~-~------~~~-~~~------avFIRAP~I~~v~~~~~v~vla~~~-g~-iVav~--qgn-~latsFHPELT~D~~ 176 (188)
T PF01174_consen 116 LDIP-G------LGE-PFP------AVFIRAPVIEEVGSPEGVEVLAELD-GK-IVAVR--QGN-ILATSFHPELTDDDT 176 (188)
T ss_dssp EEET-T------TES-EEE------EEESS--EEEEE--TTTEEEEEEET-TE-EEEEE--ETT-EEEESS-GGGSSTHC
T ss_pred EEee-c------CCC-cEE------EEEcCCcEEEEeecccccccccccc-cc-eEEEE--ecC-EEEEEeCCcccCchh
Confidence 1100 0 010 010 0111122333331 26788888876 45 44565 334 499999999987512
Q ss_pred CCChHHHHHHHHH
Q psy17159 286 RPSPPFLGLILAA 298 (326)
Q Consensus 286 ~~~~lf~~Fl~~a 298 (326)
++-+-|++.+
T Consensus 177 ---r~H~yFl~~v 186 (188)
T PF01174_consen 177 ---RIHEYFLEMV 186 (188)
T ss_dssp ---HHHHHHHHHH
T ss_pred ---HHHHHHHHHh
Confidence 4555566554
No 81
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.62 E-value=2.5e-14 Score=131.61 Aligned_cols=210 Identities=14% Similarity=0.163 Sum_probs=121.0
Q ss_pred ceEEEEEccc-CCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCC
Q psy17159 45 TVTIGLVGKY-TKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKR 123 (326)
Q Consensus 45 ~~~I~iigdy-g~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~ 123 (326)
++||+|+ .+ |. .+-.++.++|+++|+. +.++++.. +.. ....++++|+||||||++..
T Consensus 3 ~~kvaVl-~~pG~--n~d~e~~~Al~~aG~~----v~~v~~~~--~~~------------~~~~l~~~DgLvipGGfs~g 61 (261)
T PRK01175 3 SIRVAVL-RMEGT--NCEDETVKAFRRLGVE----PEYVHIND--LAA------------ERKSVSDYDCLVIPGGFSAG 61 (261)
T ss_pred CCEEEEE-eCCCC--CCHHHHHHHHHHCCCc----EEEEeecc--ccc------------cccchhhCCEEEECCCCCcc
Confidence 4789999 55 54 4456888999988863 44445431 110 01257899999999997432
Q ss_pred C--C----------chHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCC
Q psy17159 124 G--L----------EGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNP 191 (326)
Q Consensus 124 ~--~----------~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~ 191 (326)
+ . ..+.+.|+++.++++|+||||+|+|+|+.. |+.++.. ..... ..-.|.. +
T Consensus 62 D~l~~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~QlLa~~------GlLpg~~-~~~~~---~~~~L~~----N-- 125 (261)
T PRK01175 62 DYIRAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGFQVLVEL------GLLPGFD-EIAEK---PEMALTV----N-- 125 (261)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHHC------CCCCCCC-ccccC---CcceEee----c--
Confidence 1 0 012367888899999999999999999974 1222210 00000 0000110 0
Q ss_pred CCCCcceeecceeEEEecCCCchHHhhhCCCcce--eeecce-eee-eCCcccccccCCCeEEEEE------------cC
Q psy17159 192 GNMGGTMRLGKHETHFKPEHKSKLKLLYGNKDKI--EERHRH-RYE-VNKKYVPDYEKHGFLFTGV------------DE 255 (326)
Q Consensus 192 ~~~~~~~~lg~~~~~~~~~~~s~l~~~~~~~~~v--~~~h~h-~~~-vn~~~v~~l~~~gl~v~a~------------~~ 255 (326)
..+....-+..+..... +|.+...+... .+ ...|.. +|. .+++.+.+|...+..++-+ ++
T Consensus 126 --~s~~f~~~~~~~~v~~~-~s~~~~~~~~~-~~~~piah~eG~~~~~~~~~l~~l~~~~~i~~~Y~d~~g~~~~~p~NP 201 (261)
T PRK01175 126 --ESNRFECRPTYLKKENR-KCIFTKLLKKD-VFQVPVAHAEGRVVFSEEEILERLIENDQIVFRYVDENGNYAGYPWNP 201 (261)
T ss_pred --CCCCeEEeeeEEEECCC-CChhHhccCCC-EEEEeeEcCCcceEeCCHHHHHHHHHCCcEEEEEeCCCCCCCCCCCCC
Confidence 01112222333333333 56666555422 22 334443 444 4555556665566555544 34
Q ss_pred CCC--eEEEEEECCCCeEEEEcccCCCcCCCC------------CCChHHHHHHH
Q psy17159 256 KEV--RMEIAELRDHPYYVAVQFHPEYLSRPL------------RPSPPFLGLIL 296 (326)
Q Consensus 256 dg~--~veaie~~~~~~~~GvQFHPE~~~~~~------------~~~~lf~~Fl~ 296 (326)
+|. -|.+|-.++.+. +|...|||+...+. ++..+|+++++
T Consensus 202 NGs~~~IAGi~~~~G~v-lglMpHPEr~~~~~~~~~~~~~~~~~~g~~~f~~~~~ 255 (261)
T PRK01175 202 NGSIYNIAGITNEKGNV-IGLMPHPERAFYGYQHPYWEKEEDYGDGKIFFDSLIN 255 (261)
T ss_pred CCChhhcceeECCCCCE-EEEcCCHHHhhchhhccccccccCCCchHHHHHHHHH
Confidence 443 377888888886 99999999987654 44578888775
No 82
>KOG3179|consensus
Probab=99.58 E-value=1.1e-14 Score=125.80 Aligned_cols=136 Identities=24% Similarity=0.308 Sum_probs=89.4
Q ss_pred hhhcCCCEEEECCCCCC-----CCCchHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccC
Q psy17159 106 SDFCKVDGIIVPGGFGK-----RGLEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEH 180 (326)
Q Consensus 106 ~~l~~~dglilpGG~~~-----~~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~ 180 (326)
++|+.+||+||+|+.-+ +++..+...++......+||||||+|||+++.+.|+++-.-+. .
T Consensus 55 ~Dl~ky~gfvIsGS~~dAf~d~dWI~KLcs~~kkld~mkkkvlGICFGHQiiara~Gg~Vgra~K--------------G 120 (245)
T KOG3179|consen 55 EDLEKYDGFVISGSKHDAFSDADWIKKLCSFVKKLDFMKKKVLGICFGHQIIARAKGGKVGRAPK--------------G 120 (245)
T ss_pred hhhhhhceEEEeCCcccccccchHHHHHHHHHHHHHhhccceEEEeccHHHHHHhhCCccccCCC--------------C
Confidence 47889999999997432 1234566677777778899999999999999999988832111 1
Q ss_pred CeeeccCCCCCCCCCcceeecceeEEEecCCCchHHhhhCCCc-ceeeecceeeeeCCcccccccCCCeEEEEEcCCCCe
Q psy17159 181 PVVVYMPEHNPGNMGGTMRLGKHETHFKPEHKSKLKLLYGNKD-KIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVR 259 (326)
Q Consensus 181 plv~~~~~~~~~~~~~~~~lg~~~~~~~~~~~s~l~~~~~~~~-~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~ 259 (326)
| .|-+|.- ++... ...-.+.+|.-+ .++-...|+- .+-++ |++++++|.++++.
T Consensus 121 ~---------------~~~lg~i--tivk~-~~~~~~yFG~~~~~l~IikcHqD-----evle~-PE~a~llasSe~ce- 175 (245)
T KOG3179|consen 121 P---------------DLGLGSI--TIVKD-AEKPEKYFGEIPKSLNIIKCHQD-----EVLEL-PEGAELLASSEKCE- 175 (245)
T ss_pred C---------------cccccce--EEEEe-cccchhhcccchhhhhHHhhccc-----ceecC-Cchhhhhccccccc-
Confidence 1 1112221 12211 223333444110 2222233432 23344 88999999999999
Q ss_pred EEEEEECCCCeEEEEcccCCCcC
Q psy17159 260 MEIAELRDHPYYVAVQFHPEYLS 282 (326)
Q Consensus 260 veaie~~~~~~~~GvQFHPE~~~ 282 (326)
+|++...++ ++++|-|||+..
T Consensus 176 ve~fs~~~~--~l~fQGHPEyn~ 196 (245)
T KOG3179|consen 176 VEMFSIEDH--LLCFQGHPEYNK 196 (245)
T ss_pred eEEEEecce--EEEecCCchhhH
Confidence 999998887 589999999975
No 83
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.57 E-value=3e-13 Score=119.52 Aligned_cols=197 Identities=17% Similarity=0.247 Sum_probs=120.6
Q ss_pred ceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhc-CCCEEEECCCCCCC
Q psy17159 45 TVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFC-KVDGIIVPGGFGKR 123 (326)
Q Consensus 45 ~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~-~~dglilpGG~~~~ 123 (326)
++||+|+ .|-- ..+...+.++++.+|. ++..+|.... .+. ++|+||+||||+.-
T Consensus 2 ~~kvaVi-~fpG-tN~d~d~~~A~~~aG~----~~~~V~~~d~-------------------~~~~~~d~vv~pGGFSyG 56 (231)
T COG0047 2 RPKVAVL-RFPG-TNCDYDMAAAFERAGF----EAEDVWHSDL-------------------LLGRDFDGVVLPGGFSYG 56 (231)
T ss_pred CceEEEE-EcCC-cCchHHHHHHHHHcCC----CceEEEeeec-------------------ccCCCccEEEEcCCCCcc
Confidence 4799999 5432 1456778889998887 4466777621 244 79999999998663
Q ss_pred C---------CchHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCC
Q psy17159 124 G---------LEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNM 194 (326)
Q Consensus 124 ~---------~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~ 194 (326)
+ ...+.+.++++.+.++|+||||-|+|+|.++ |+.++.-.+.. ...+++.
T Consensus 57 DyLr~Gaiaa~~~v~~~v~~~a~~g~~vLGICNGfQiL~e~------gLlPGal~~N~------s~~F~cr--------- 115 (231)
T COG0047 57 DYLRAGAIAAIAPVMDEVREFAEKGKPVLGICNGFQILSEA------GLLPGALTRNE------SLRFECR--------- 115 (231)
T ss_pred cccCcchHHhhHHHHHHHHHHHHCCCeEEEEcchhHHHHHc------CcCCcceecCC------CCceEEE---------
Confidence 2 2345677888888999999999999999953 33333211110 0111111
Q ss_pred CcceeecceeEEEecCCCchHHhhhCCCc---ceeeecceeeeeCCcccccccCCCeEEEEE-----------cCCCC--
Q psy17159 195 GGTMRLGKHETHFKPEHKSKLKLLYGNKD---KIEERHRHRYEVNKKYVPDYEKHGFLFTGV-----------DEKEV-- 258 (326)
Q Consensus 195 ~~~~~lg~~~~~~~~~~~s~l~~~~~~~~---~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~-----------~~dg~-- 258 (326)
+..+.+... +|.+...|.... ...+..--+|.++.+.+.+|+.++..+.-+ +++|.
T Consensus 116 -------~v~l~V~~~-~t~ft~~~~~g~~i~ipVAHgEGr~~~~~~~l~~l~~ngqvvfrY~d~~G~~~~~~NPNGS~~ 187 (231)
T COG0047 116 -------WVYLRVENN-NTPFTSGYEGGEVIPIPVAHGEGRYYADDETLAELEENGQVVFRYVDNNGETEEYANPNGSVN 187 (231)
T ss_pred -------EEEEEEecC-CCHHHHhcCCCceEEEEEeecceeEEccHHHHHHHhhCCeEEEEEecCCCceeeeeCCCCChh
Confidence 112233333 677777775422 123344456767665666665555444433 34554
Q ss_pred eEEEEEECCCCeEEEEcccCCCcCCCCCC----ChHHHHHHH
Q psy17159 259 RMEIAELRDHPYYVAVQFHPEYLSRPLRP----SPPFLGLIL 296 (326)
Q Consensus 259 ~veaie~~~~~~~~GvQFHPE~~~~~~~~----~~lf~~Fl~ 296 (326)
-|.+|...+.++ +|..-|||+......+ ..||++.+.
T Consensus 188 ~IaGI~n~~G~V-~gmMPHPERa~~~~~g~~Dg~~lF~s~~~ 228 (231)
T COG0047 188 GIAGITNEDGNV-LGMMPHPERASESLLGGEDGLRLFRSARK 228 (231)
T ss_pred hceeEEcCCCCE-EEecCCchhhhhcccCCchHHHHHHHHHH
Confidence 366677777786 9999999998754322 345655544
No 84
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=99.55 E-value=6.3e-14 Score=127.70 Aligned_cols=188 Identities=19% Similarity=0.219 Sum_probs=105.7
Q ss_pred EEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCC----
Q psy17159 49 GLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRG---- 124 (326)
Q Consensus 49 ~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~---- 124 (326)
+|+=..|. .+..++.++|+++|. .+.++++... ... ...++++|+||||||+...+
T Consensus 2 ~vl~~pG~--n~~~~~~~al~~aG~----~v~~v~~~~~-~~~-------------~~~l~~~d~liipGG~~~~d~l~~ 61 (238)
T cd01740 2 AVLRFPGS--NCDRDMAYAFELAGF----EAEDVWHNDL-LAG-------------RKDLDDYDGVVLPGGFSYGDYLRA 61 (238)
T ss_pred EEEEcCCc--CCHHHHHHHHHHcCC----CEEEEeccCC-ccc-------------cCCHhhCCEEEECCCCCccccccc
Confidence 44435565 678899999998876 3445555421 110 11467899999999975321
Q ss_pred -----Cch-HHHHHHHHHHcCCCEEEEehhHHHHHHH--hCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCc
Q psy17159 125 -----LEG-KIAACKWARENNKPFLGICLGLQAAVIE--YGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGG 196 (326)
Q Consensus 125 -----~~~-~~~~i~~~~~~~~PvLGIClG~QlL~~~--~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~ 196 (326)
... +.++++.+.+.++|+||||.|+|+|+.. +++++..... .++.- . .. +
T Consensus 62 ~~~~~~~~~~~~~l~~~~~~g~pvlGIC~G~QlL~~~gll~g~~~~~~~---~~~~~-----~--------~~-----~- 119 (238)
T cd01740 62 GAIAAASPLLMEEVKEFAERGGLVLGICNGFQILVELGLLPGALIRNKG---LKFIC-----R--------WQ-----N- 119 (238)
T ss_pred ccccccChhHHHHHHHHHhCCCeEEEECcHHHHHHHcCCCccccccCCC---Cceec-----c--------cc-----C-
Confidence 112 6678899999999999999999999985 3433311110 00000 0 00 0
Q ss_pred ceeecceeEEEecCCCchHHhh--hCCCcceeeecce-eeeeCCcccccccCCCeEEEE------------EcCCCC--e
Q psy17159 197 TMRLGKHETHFKPEHKSKLKLL--YGNKDKIEERHRH-RYEVNKKYVPDYEKHGFLFTG------------VDEKEV--R 259 (326)
Q Consensus 197 ~~~lg~~~~~~~~~~~s~l~~~--~~~~~~v~~~h~h-~~~vn~~~v~~l~~~gl~v~a------------~~~dg~--~ 259 (326)
+ +....+... ++++.+. .+....+...|.+ +|..+++.+.++...+..+-. .+++|. -
T Consensus 120 --~--~v~~~v~~~-~si~t~~~~~g~~l~~~vaHgeG~~~~~~~~~~~l~~~~~i~~y~~~~~~~~~~yp~NPnGs~~~ 194 (238)
T cd01740 120 --R--FVTLRVENN-DSPFTKGYMEGEVLRIPVAHGEGRFYADDETLAELEENGQIAQYVDDDGNVTERYPANPNGSLDG 194 (238)
T ss_pred --c--eEEEEEcCC-CCceecCCCCCCEEEEEeECCceeeEcCHHHHHHHHHCCCEEEEEcCCCCccccCCCCCCCChhc
Confidence 0 011111111 3333332 2222134555554 555555444444333333211 134454 3
Q ss_pred EEEEEECCCCeEEEEcccCCCcCCC
Q psy17159 260 MEIAELRDHPYYVAVQFHPEYLSRP 284 (326)
Q Consensus 260 veaie~~~~~~~~GvQFHPE~~~~~ 284 (326)
|.+|-.++.+. +|...|||+...+
T Consensus 195 iAgi~~~~Grv-lglMphPer~~~~ 218 (238)
T cd01740 195 IAGICNEDGRV-LGMMPHPERAVEP 218 (238)
T ss_pred ceEEEcCCCCE-EEEcCChHHcccc
Confidence 78888888886 9999999998765
No 85
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=99.54 E-value=2.2e-13 Score=127.29 Aligned_cols=207 Identities=15% Similarity=0.133 Sum_probs=112.8
Q ss_pred ceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCC-C-chhhcchhhhh--cCCCEEEECCCC
Q psy17159 45 TVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTG-N-MAEYHKTWSDF--CKVDGIIVPGGF 120 (326)
Q Consensus 45 ~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~-~-~~~~~~~~~~l--~~~dglilpGG~ 120 (326)
.++|+|+ +.=. +....-..|.+.-......|++.++...+......+. . ...|.. .+.+ ..+||+||+|++
T Consensus 35 pl~i~il-NlMp---~k~~TE~q~~rll~~~~~qv~v~~~~~~~h~~~~~~~~hl~~~y~~-~~~i~~~~~DG~IITGAp 109 (302)
T PRK05368 35 PLKILIL-NLMP---KKIETETQFLRLLGNTPLQVDIHLLRIDSHESKNTPAEHLENFYCT-FEDIKDEKFDGLIITGAP 109 (302)
T ss_pred CccEEEE-eCCC---CCchHHHHHHHHhcCCCceEEEEEEecCCcCCCCCCHHHHHHhccC-HHHhccCCCCEEEEcCCC
Confidence 4899999 5432 2223323333332223345556666544322211000 0 111222 2233 489999999987
Q ss_pred CC--C-----CCchHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCC
Q psy17159 121 GK--R-----GLEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGN 193 (326)
Q Consensus 121 ~~--~-----~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~ 193 (326)
-. . .+..+.++++.+.+..+|+||||.|+|+++.++||... ...+ ..
T Consensus 110 ~e~~~fedv~YW~El~~i~~w~~~~~~s~LgICwGaQa~a~algGi~k-~~~~-~K------------------------ 163 (302)
T PRK05368 110 VEQLPFEDVDYWDELKEILDWAKTHVTSTLFICWAAQAALYHLYGIPK-YTLP-EK------------------------ 163 (302)
T ss_pred CCCccCCCCchHHHHHHHHHHHHHcCCCEEEEcHHHHHHHHHcCCCcc-CCCC-Cc------------------------
Confidence 43 1 12345667777778899999999999999999877421 0000 00
Q ss_pred CCcceeecceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEE
Q psy17159 194 MGGTMRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVA 273 (326)
Q Consensus 194 ~~~~~~lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~G 273 (326)
..|-+........+.++.++. . ....-|-|.-.|+.+.+. .+++++++|.++.+. +.++..++... ++
T Consensus 164 -----~~Gv~~~~~~~~~~pL~~g~~-d--~F~~phSr~~~V~~~~i~--~~~~l~vLA~S~~~g-v~~~~~~~~r~-~~ 231 (302)
T PRK05368 164 -----LSGVFEHRVLDPHHPLLRGFD-D--SFLVPHSRYTEVREEDIR--AATGLEILAESEEAG-VYLFASKDKRE-VF 231 (302)
T ss_pred -----eeEEEEEEEcCCCChhhcCCC-C--ccccceeehhhccHHHhc--cCCCCEEEecCCCCC-eEEEEeCCCCE-EE
Confidence 012111112111023333322 2 122233333334333332 268999999998888 88998877776 99
Q ss_pred EcccCCCcCCCCCCChHHHHHHHHHH
Q psy17159 274 VQFHPEYLSRPLRPSPPFLGLILAAA 299 (326)
Q Consensus 274 vQFHPE~~~~~~~~~~lf~~Fl~~a~ 299 (326)
+|+|||+... -|-....+...
T Consensus 232 vQgHPEYd~~-----tL~~EY~RD~~ 252 (302)
T PRK05368 232 VTGHPEYDAD-----TLAQEYFRDLG 252 (302)
T ss_pred EECCCCCCHH-----HHHHHHHHHHh
Confidence 9999999753 35555554443
No 86
>KOG3210|consensus
Probab=99.44 E-value=7.7e-13 Score=111.11 Aligned_cols=107 Identities=19% Similarity=0.263 Sum_probs=76.2
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhc--CCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHS--NRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKR 123 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~--~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~ 123 (326)
.-||++ +++|++...++.++++.++- +.++.+..+. .++++.++|++|||||.++.
T Consensus 12 ~VIGVL----ALQGAFiEH~N~~~~c~~en~y~Ik~~~~tVK------------------T~~D~aq~DaLIIPGGEST~ 69 (226)
T KOG3210|consen 12 VVIGVL----ALQGAFIEHVNHVEKCIVENRYEIKLSVMTVK------------------TKNDLAQCDALIIPGGESTA 69 (226)
T ss_pred eEEeee----ehhhHHHHHHHHHHHhhccCcceEEEEEEeec------------------CHHHHhhCCEEEecCCchhH
Confidence 458888 78899999999998776654 2233333332 23589999999999998763
Q ss_pred -----CCchHHHHHHHHHHcC-CCEEEEehhHHHHHHHh-C----cccccccCCcccccCCC
Q psy17159 124 -----GLEGKIAACKWARENN-KPFLGICLGLQAAVIEY-G----RSVLGLKDADTEEEQPP 174 (326)
Q Consensus 124 -----~~~~~~~~i~~~~~~~-~PvLGIClG~QlL~~~~-g----~~~l~~~~~~~~~~~~~ 174 (326)
...++..-+.+++.+. +|+||+|.||..|+.-. + .+.|+..+..+.+...+
T Consensus 70 mslia~~tgL~d~L~~fVhn~~k~~WGTCAGmI~LS~ql~nek~~~~tL~~lkv~V~RN~FG 131 (226)
T KOG3210|consen 70 MSLIAERTGLYDDLYAFVHNPSKVTWGTCAGMIYLSQQLSNEKKLVKTLNLLKVKVKRNAFG 131 (226)
T ss_pred HHHHHhhhhhHHHHHHHhcCCCccceeechhhhhhhhhhcCCcchhhhhhheeEEEeecccc
Confidence 3356777777777776 99999999999999643 2 24567777766665443
No 87
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=99.22 E-value=8.1e-11 Score=108.22 Aligned_cols=200 Identities=19% Similarity=0.232 Sum_probs=101.7
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCCC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRGL 125 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~~ 125 (326)
+||+|+=-.|. ..-..+..||+.+|+. +..+++.. .+. ....|+++|+|+||||++..+.
T Consensus 2 pkV~Vl~~pGt--Nce~e~~~A~~~aG~~----~~~v~~~d-l~~-------------~~~~l~~~~~lvipGGFS~gD~ 61 (259)
T PF13507_consen 2 PKVAVLRFPGT--NCERETAAAFENAGFE----PEIVHIND-LLS-------------GESDLDDFDGLVIPGGFSYGDY 61 (259)
T ss_dssp -EEEEEE-TTE--EEHHHHHHHHHCTT-E----EEEEECCH-HHT-------------TS--GCC-SEEEE-EE-GGGGT
T ss_pred CEEEEEECCCC--CCHHHHHHHHHHcCCC----ceEEEEEe-ccc-------------ccCchhhCcEEEECCccCcccc
Confidence 58888834444 5578899999999884 34455442 111 1126889999999999865211
Q ss_pred --------------chHHHHHHHHHHc-CCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCC
Q psy17159 126 --------------EGKIAACKWAREN-NKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHN 190 (326)
Q Consensus 126 --------------~~~~~~i~~~~~~-~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~ 190 (326)
..+.+.|++++++ ++|+||||-|+|+|... |+.++...... ...+ .+..+
T Consensus 62 l~sg~~~a~~~~~~~~~~~~i~~f~~~~g~~vLGIcNGfQiL~~~------Gllp~~~~~~~-----~~~~---~L~~N- 126 (259)
T PF13507_consen 62 LRSGAIAAARLLFNSPLMDAIREFLERPGGFVLGICNGFQILVEL------GLLPGGEIKDS-----EQSP---ALTPN- 126 (259)
T ss_dssp TSTTHHHHHHHCCSCCCHHHHHHHHHCTT-EEEEECHHHHHHCCC------CCSTT-----------TT-----EEE---
T ss_pred chHHHHHHHHhhccHHHHHHHHHHHhcCCCeEEEEchHhHHHHHh------CcCCCcccccc-----CCCc---EEcCC-
Confidence 2346778888888 99999999999999863 22222000000 0000 00000
Q ss_pred CCCCCcceeecceeEEEecCCCchHHhhhCCCcceeeecc-eeeee-CCcccccccCCCeEEEEEcC-------------
Q psy17159 191 PGNMGGTMRLGKHETHFKPEHKSKLKLLYGNKDKIEERHR-HRYEV-NKKYVPDYEKHGFLFTGVDE------------- 255 (326)
Q Consensus 191 ~~~~~~~~~lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h~-h~~~v-n~~~v~~l~~~gl~v~a~~~------------- 255 (326)
..+....-+..+.+...+.+++.+-... ..+...|. -+|.+ +++.+..|+..+..++-+..
T Consensus 127 ---~s~~fe~rwv~~~v~~~s~~~~~~~~~~-~~lPiahgeG~~~~~~~~~l~~l~~~~qi~~~Y~~~~g~~a~~yP~NP 202 (259)
T PF13507_consen 127 ---ASGRFESRWVNLVVNENSPSIFLRGLEG-IVLPIAHGEGRFYARDEATLEELEENGQIAFRYVDEEGNPAQEYPRNP 202 (259)
T ss_dssp ---TTSS-EEEEEEEEE--SSTTCCCTTTTC-EEEEEEESS-EEE-SSHHHHHHHCCTTEEEEEECSTTSSB--STTTSS
T ss_pred ---CCCCeEEEEEEEEEecCCcceecCCCCE-EEEEEecCcceeecCCHHHHHHHHhcCeEEEEEecCCCCcccCCCCCC
Confidence 0111222233332211102222211111 12223343 35555 45556666566666655543
Q ss_pred CC--CeEEEEEECCCCeEEEEcccCCCcCCCC
Q psy17159 256 KE--VRMEIAELRDHPYYVAVQFHPEYLSRPL 285 (326)
Q Consensus 256 dg--~~veaie~~~~~~~~GvQFHPE~~~~~~ 285 (326)
+| .-|++|-..+.+. +|...|||+...+.
T Consensus 203 NGS~~~IAGics~~Grv-lglMpHPEr~~~~~ 233 (259)
T PF13507_consen 203 NGSVNNIAGICSPDGRV-LGLMPHPERAFEPW 233 (259)
T ss_dssp S--GGGEEEEE-TTSSE-EEESSBCCGTTCCC
T ss_pred CCCccceeEEEcCCCCE-EEEcCChHHhCchh
Confidence 22 1388999999886 99999999987553
No 88
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=99.14 E-value=1e-10 Score=103.34 Aligned_cols=83 Identities=23% Similarity=0.340 Sum_probs=62.2
Q ss_pred EEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCC---
Q psy17159 48 IGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRG--- 124 (326)
Q Consensus 48 I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~--- 124 (326)
|+|+ +|+. .+|+.|+.++++..|++ +.++.+. +.+.++|+||||||+....
T Consensus 1 ~~~~-~y~~-~gN~~~l~~~~~~~G~~------~~~~~~~------------------~~~~~~d~lilpGg~~~~~~~~ 54 (194)
T cd01750 1 IAVI-RYPD-ISNFTDLDPLAREPGVD------VRYVEVP------------------EGLGDADLIILPGSKDTIQDLA 54 (194)
T ss_pred CEee-cCCC-ccCHHHHHHHHhcCCce------EEEEeCC------------------CCCCCCCEEEECCCcchHHHHH
Confidence 5677 8862 38999999999888763 3344421 1356789999999974421
Q ss_pred ---CchHHHHHHHHHHcCCCEEEEehhHHHHHHHh
Q psy17159 125 ---LEGKIAACKWARENNKPFLGICLGLQAAVIEY 156 (326)
Q Consensus 125 ---~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~ 156 (326)
...+.+.|+.+.+.++|+||||.|||+|+...
T Consensus 55 ~~~~~~~~~~i~~~~~~g~pvlgiC~G~qlL~~~~ 89 (194)
T cd01750 55 WLRKRGLAEAIKNYARAGGPVLGICGGYQMLGKYI 89 (194)
T ss_pred HHHHcCHHHHHHHHHHCCCcEEEECHHHHHhhhhc
Confidence 23467788888889999999999999999765
No 89
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.14 E-value=5.2e-10 Score=111.06 Aligned_cols=78 Identities=19% Similarity=0.268 Sum_probs=54.8
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCC-
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRG- 124 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~- 124 (326)
|||||+ +..|+.+++++++. ..+.++|++. .+.|.++|+||||||.-...
T Consensus 1 m~iGvl--------al~sv~~al~~lg~---~~~~vv~~~~------------------~~~l~~~D~lILPGG~~~~~~ 51 (476)
T PRK06278 1 MEIGLL--------DIKGSLPCFENFGN---LPTKIIDENN------------------IKEIKDLDGLIIPGGSLVESG 51 (476)
T ss_pred CEEEEE--------ehhhHHHHHHHhcC---CCcEEEEeCC------------------hHHhccCCEEEECCCchhhcc
Confidence 489999 47888889888875 1345555542 23788999999999852211
Q ss_pred --CchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 125 --LEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 125 --~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
..++.+.|+ +.++||||||.|||||+..
T Consensus 52 ~l~~~l~~~i~---~~g~pvlGICgG~QmLg~~ 81 (476)
T PRK06278 52 SLTDELKKEIL---NFDGYIIGICSGFQILSEK 81 (476)
T ss_pred hHHHHHHHHHH---HcCCeEEEEcHHHHhcccc
Confidence 123334443 3489999999999999965
No 90
>KOG1559|consensus
Probab=99.14 E-value=6.6e-11 Score=105.08 Aligned_cols=154 Identities=23% Similarity=0.265 Sum_probs=87.2
Q ss_pred hhhcCCCEEEECCCCCCCCCc-hHHHHH-HHHHHc-----CCCEEEEehhHHHHHHH--hCcccccccCCcccccCCCCC
Q psy17159 106 SDFCKVDGIIVPGGFGKRGLE-GKIAAC-KWAREN-----NKPFLGICLGLQAAVIE--YGRSVLGLKDADTEEEQPPGQ 176 (326)
Q Consensus 106 ~~l~~~dglilpGG~~~~~~~-~~~~~i-~~~~~~-----~~PvLGIClG~QlL~~~--~g~~~l~~~~~~~~~~~~~g~ 176 (326)
..++..+|||++||...+... ...+.| ...+++ ..||+|||||+.+|... .++.+|.-.|....
T Consensus 107 qklelvNGviftGGwak~~dY~~vvkkifnk~le~nDaGehFPvyg~CLGFE~lsmiISqnrdile~~d~vd~------- 179 (340)
T KOG1559|consen 107 QKLELVNGVIFTGGWAKRGDYFEVVKKIFNKVLERNDAGEHFPVYGICLGFELLSMIISQNRDILERFDAVDV------- 179 (340)
T ss_pred HHHHHhceeEecCcccccccHHHHHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHhcChhHHHhhccccc-------
Confidence 356789999999996544321 112211 233332 49999999999999964 35555433332110
Q ss_pred CccCCeeeccCCCCCCCCCcceeecceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccc--cCCCeEEEEEc
Q psy17159 177 TLEHPVVVYMPEHNPGNMGGTMRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDY--EKHGFLFTGVD 254 (326)
Q Consensus 177 ~~~~plv~~~~~~~~~~~~~~~~lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l--~~~gl~v~a~~ 254 (326)
++...++.... . +..++..-+..++.++ +.++ ...+.|.|.++|+....- ...-|.++-++
T Consensus 180 AssLqF~~nvn------~--------~~t~FQrFPpELLkkL-~~dc--Lvmq~Hk~gisp~nF~~N~~Ls~FFnilTT~ 242 (340)
T KOG1559|consen 180 ASSLQFVGNVN------I--------HGTMFQRFPPELLKKL-STDC--LVMQNHKFGISPKNFQGNPALSSFFNILTTC 242 (340)
T ss_pred ccceeeecccc------e--------eehhHhhCCHHHHHHh-ccch--heeeccccccchhhccCCHHHHHHHhheeee
Confidence 01111111000 0 1112221102344444 3432 344568899888754321 13457787777
Q ss_pred CCCC---eEEEEEECCCCeEEEEcccCCCcCCC
Q psy17159 255 EKEV---RMEIAELRDHPYYVAVQFHPEYLSRP 284 (326)
Q Consensus 255 ~dg~---~veaie~~~~~~~~GvQFHPE~~~~~ 284 (326)
.|+. +|..++...+|. .|+|||||....+
T Consensus 243 ~D~~~k~fvSTv~~~kYPv-tgfQWHPEKnafE 274 (340)
T KOG1559|consen 243 TDGNSKTFVSTVESKKYPV-TGFQWHPEKNAFE 274 (340)
T ss_pred cCCCceEEEEeecceeccc-eeeeecCccCccc
Confidence 6662 788888899997 9999999986543
No 91
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=99.10 E-value=4.1e-09 Score=114.00 Aligned_cols=212 Identities=16% Similarity=0.140 Sum_probs=116.7
Q ss_pred CceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCC
Q psy17159 44 KTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKR 123 (326)
Q Consensus 44 ~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~ 123 (326)
.++||+|+=-.|. ..-....+|++.+|+. +..+|+..- ....+.+.. ++....|+++++|++||||+..
T Consensus 976 ~kpkvaIl~~pGt--Nce~d~a~Af~~aG~~----~~~v~~~dl--~~~~i~~s~---~~~~~~l~~~~~l~~pGGFSyG 1044 (1239)
T TIGR01857 976 EKPRVVIPVFPGT--NSEYDSAKAFEKEGAE----VNLVIFRNL--NEEALVESV---ETMVDEIDKSQILMLPGGFSAG 1044 (1239)
T ss_pred CCCeEEEEECCCC--CCHHHHHHHHHHcCCc----eEEEEEecC--cccccccch---hhhhcccccCcEEEEcCccCcc
Confidence 3579999944454 5677889999988874 455565521 110000000 0112357899999999998653
Q ss_pred CC--------------chHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCC
Q psy17159 124 GL--------------EGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEH 189 (326)
Q Consensus 124 ~~--------------~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~ 189 (326)
+. ..+.+.++++++++.++||||.|+|+|... ||.+... +.+. . ...|-.. .+
T Consensus 1045 D~l~~~~~~~aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~~l------GLlP~~~--~~~~-~-~~~p~l~---~N 1111 (1239)
T TIGR01857 1045 DEPDGSAKFIAAILRNPKVRVAIDSFLARDGLILGICNGFQALVKS------GLLPYGN--IEAA-N-ETSPTLT---YN 1111 (1239)
T ss_pred cccchhHHHHHHHhhChHHHHHHHHHHhCCCcEEEechHHHHHHHc------CCCcCcc--cccc-c-cCCceee---ec
Confidence 21 235667777788899999999999999973 2222100 0000 0 0011000 00
Q ss_pred CCCCCCcceeecceeEEEecCCCchHHhhhCCCc--ceeeecce-eeeeCCcccccccCCCeEEEEE-------------
Q psy17159 190 NPGNMGGTMRLGKHETHFKPEHKSKLKLLYGNKD--KIEERHRH-RYEVNKKYVPDYEKHGFLFTGV------------- 253 (326)
Q Consensus 190 ~~~~~~~~~~lg~~~~~~~~~~~s~l~~~~~~~~--~v~~~h~h-~~~vn~~~v~~l~~~gl~v~a~------------- 253 (326)
. .+....-+..+.+... .|++...+.... .+...|.- +|.++++.+.+|...+..++-+
T Consensus 1112 ~----s~rf~~r~v~~~v~~~-~s~~~~~~~~g~~~~ipvaHgEGrf~~~~~~l~~l~~~~qva~rYvd~~g~~t~~~p~ 1186 (1239)
T TIGR01857 1112 D----INRHVSKIVRTRIAST-NSPWLSGVSVGDIHAIPVSHGEGRFVASDEVLAELRENGQIATQYVDFNGKPSMDSKY 1186 (1239)
T ss_pred C----CCCeEEeeeEEEECCC-CChhHhcCCCCCEEEEEeEcCCcceecCHHHHHHHHHCCcEEEEEeCCCCCcccCCCC
Confidence 0 0111112223333333 566655543111 23445543 5555554555554555444433
Q ss_pred cCCCC--eEEEEEECCCCeEEEEcccCCCcCCCC
Q psy17159 254 DEKEV--RMEIAELRDHPYYVAVQFHPEYLSRPL 285 (326)
Q Consensus 254 ~~dg~--~veaie~~~~~~~~GvQFHPE~~~~~~ 285 (326)
+++|. -|++|-.++.++ +|..-|||+...+.
T Consensus 1187 NPNGS~~~IaGi~s~dGrv-lg~MpHpER~~~~~ 1219 (1239)
T TIGR01857 1187 NPNGSSLAIEGITSPDGRI-FGKMGHSERYGDGL 1219 (1239)
T ss_pred CCCCChhhhhEeECCCCCE-EEECCCcccccCcc
Confidence 34554 366777788886 99999999987543
No 92
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.98 E-value=1.3e-08 Score=110.94 Aligned_cols=206 Identities=13% Similarity=0.087 Sum_probs=114.1
Q ss_pred CCceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCC
Q psy17159 43 NKTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGK 122 (326)
Q Consensus 43 ~~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~ 122 (326)
..++||+|+=-.|. ..-....+||+.+|+.. ..+++.. +..- ...|+++++|++||||+.
T Consensus 1035 ~~~pkVaVl~~pGt--N~~~e~~~Af~~aGf~~----~~V~~~d--l~~~------------~~~L~~~~glv~pGGFSy 1094 (1307)
T PLN03206 1035 TSKPKVAIIREEGS--NGDREMAAAFYAAGFEP----WDVTMSD--LLNG------------RISLDDFRGIVFVGGFSY 1094 (1307)
T ss_pred CCCCeEEEEECCCC--CCHHHHHHHHHHcCCce----EEEEeee--cccc------------cccccceeEEEEcCcCCC
Confidence 34689999945555 56788999999999743 4445441 1110 125789999999999865
Q ss_pred CCC--------------chHHHHHHHHHH-cCCCEEEEehhHHHHHHHhCcccccccCCccc-ccCCCCCCccCC-eeec
Q psy17159 123 RGL--------------EGKIAACKWARE-NNKPFLGICLGLQAAVIEYGRSVLGLKDADTE-EEQPPGQTLEHP-VVVY 185 (326)
Q Consensus 123 ~~~--------------~~~~~~i~~~~~-~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~-~~~~~g~~~~~p-lv~~ 185 (326)
.+. ..+.+.++.+++ .+.++||||.|+|+|... |+.++... ...........| ++.
T Consensus 1095 GD~l~sg~~wa~~i~~n~~~~~~~~~f~~~~d~~~LGICNGfQiL~~l------gllPg~~~~~~~~~~~~e~~p~l~~- 1167 (1307)
T PLN03206 1095 ADVLDSAKGWAGSIRFNEPLLQQFQEFYNRPDTFSLGVCNGCQLMALL------GWVPGPQVGGGLGAGGDPSQPRFVH- 1167 (1307)
T ss_pred ccccchHHHHHHHHHhChHHHHHHHHHHhCCCceEEEEcHHHHHHHHc------CCCCCCccccccccccccCCceeee-
Confidence 321 234556777774 489999999999999873 33332100 000000000001 111
Q ss_pred cCCCCCCCCCcceeecceeEEEecCCCchHHhhhC-CCcceeeecceee-eeC-CcccccccCCCeEEEEE---------
Q psy17159 186 MPEHNPGNMGGTMRLGKHETHFKPEHKSKLKLLYG-NKDKIEERHRHRY-EVN-KKYVPDYEKHGFLFTGV--------- 253 (326)
Q Consensus 186 ~~~~~~~~~~~~~~lg~~~~~~~~~~~s~l~~~~~-~~~~v~~~h~h~~-~vn-~~~v~~l~~~gl~v~a~--------- 253 (326)
+ ..+....-+..+.+... .|++.+-+. ..-.++..|.+.- .+. ++.+..|...+..++-+
T Consensus 1168 ---N----~s~rfesr~v~v~V~~s-~si~l~~~~G~~l~i~vaHgEGr~~~~~~~~l~~l~~~gqva~rY~d~~g~~t~ 1239 (1307)
T PLN03206 1168 ---N----ESGRFECRFTSVTIEDS-PAIMLKGMEGSTLGVWAAHGEGRAYFPDESVLDEVLKSNLAPVRYCDDDGEPTE 1239 (1307)
T ss_pred ---c----CCCCeEEeceEEEECCC-CChhhcccCCCEEEEEEEcCCCCeecCCHHHHHHHHhcCeEEEEEeCCCCCccC
Confidence 0 01111222233333333 565554443 2113566676633 322 33444554455444333
Q ss_pred ----cCCCC--eEEEEEECCCCeEEEEcccCCCcCCC
Q psy17159 254 ----DEKEV--RMEIAELRDHPYYVAVQFHPEYLSRP 284 (326)
Q Consensus 254 ----~~dg~--~veaie~~~~~~~~GvQFHPE~~~~~ 284 (326)
+++|. -|++|-.++.++ +|...|||+...+
T Consensus 1240 ~yP~NPNGS~~~IAGi~s~dGRv-lgmMpHPER~~~~ 1275 (1307)
T PLN03206 1240 QYPFNPNGSPLGIAALCSPDGRH-LAMMPHPERCFLM 1275 (1307)
T ss_pred CCCCCCCCChhhceeeECCCCCE-EEEcCCHHHhhhh
Confidence 34554 277888888886 9999999987644
No 93
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.94 E-value=1.9e-08 Score=110.52 Aligned_cols=197 Identities=13% Similarity=0.117 Sum_probs=112.1
Q ss_pred CceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCC
Q psy17159 44 KTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKR 123 (326)
Q Consensus 44 ~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~ 123 (326)
.++||+|+=-.|. ..-....+||+.+|+.. ..+++.. +.. . ...|+++++|++||||+..
T Consensus 1034 ~~pkv~il~~pG~--N~~~e~~~Af~~aG~~~----~~v~~~d--l~~-----~-------~~~l~~~~~l~~~GGFS~g 1093 (1290)
T PRK05297 1034 ARPKVAILREQGV--NSHVEMAAAFDRAGFDA----IDVHMSD--LLA-----G-------RVTLEDFKGLVACGGFSYG 1093 (1290)
T ss_pred CCCeEEEEECCCC--CCHHHHHHHHHHcCCCe----EEEEeec--CcC-----C-------CCChhhCcEEEECCccCCc
Confidence 3579999944454 56788999999999743 4444441 111 0 1258899999999998653
Q ss_pred CC--------------chHHHHHHHHH-HcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCC
Q psy17159 124 GL--------------EGKIAACKWAR-ENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPE 188 (326)
Q Consensus 124 ~~--------------~~~~~~i~~~~-~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~ 188 (326)
+. ..+.+.++.++ +.+.++||||.|+|+|.... .+ .++.. ..|-. ..
T Consensus 1094 D~lgsg~~~a~~~~~n~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~lg--~l---~p~~~----------~~p~l---~~ 1155 (1290)
T PRK05297 1094 DVLGAGEGWAKSILFNPRLRDQFEAFFARPDTFALGVCNGCQMMSNLK--EI---IPGAE----------HWPRF---VR 1155 (1290)
T ss_pred ccchHHHHHHHHhhccHHHHHHHHHHHhCCCceEEEEcHHHHHHHHhC--Cc---cCCCC----------CCCeE---ee
Confidence 21 12355566655 56899999999999999852 11 11110 00100 00
Q ss_pred CCCCCCCcceeecceeEEEecCCCchHHhhhC-CCcceeeecce-eeeeCCcccccccCCCeEEEEE-------------
Q psy17159 189 HNPGNMGGTMRLGKHETHFKPEHKSKLKLLYG-NKDKIEERHRH-RYEVNKKYVPDYEKHGFLFTGV------------- 253 (326)
Q Consensus 189 ~~~~~~~~~~~lg~~~~~~~~~~~s~l~~~~~-~~~~v~~~h~h-~~~vn~~~v~~l~~~gl~v~a~------------- 253 (326)
+. .+....-+..+.+... .|++.+-+. ..-.++..|.+ +|.++.+.+..|...+..++-+
T Consensus 1156 N~----s~rfesr~~~~~v~~~-~s~~~~~~~g~~l~~~vaHgeGr~~~~~~~~~~l~~~~~ia~~Y~d~~g~~~~~yp~ 1230 (1290)
T PRK05297 1156 NR----SEQFEARFSLVEVQES-PSIFLQGMAGSRLPIAVAHGEGRAEFPDAHLAALEAKGLVALRYVDNHGQVTETYPA 1230 (1290)
T ss_pred cC----CCCeEEeeeEEEECCC-CChhHhhcCCCEEEEEEEcCcccEEcCHHHHHHHHHCCcEEEEEECCCCCcccCCCC
Confidence 00 0011111222333333 555554443 21124556655 4555544455554555444333
Q ss_pred cCCCC--eEEEEEECCCCeEEEEcccCCCcCCC
Q psy17159 254 DEKEV--RMEIAELRDHPYYVAVQFHPEYLSRP 284 (326)
Q Consensus 254 ~~dg~--~veaie~~~~~~~~GvQFHPE~~~~~ 284 (326)
+++|. -|++|-.++.++ +|...|||+...+
T Consensus 1231 NPNGS~~~IaGi~s~dGrv-lglMpHPEr~~~~ 1262 (1290)
T PRK05297 1231 NPNGSPNGITGLTTADGRV-TIMMPHPERVFRT 1262 (1290)
T ss_pred CCCCChhcceEeECCCCCE-EEEcCChHHhcch
Confidence 34454 377888888886 9999999987654
No 94
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=98.87 E-value=4.2e-08 Score=107.59 Aligned_cols=92 Identities=13% Similarity=0.120 Sum_probs=64.2
Q ss_pred CceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCC
Q psy17159 44 KTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKR 123 (326)
Q Consensus 44 ~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~ 123 (326)
.++||+|+-..|. ....+...||..+|+. +..+++.. +... ...|+++++|++||||+..
T Consensus 1054 ~~p~vail~~pG~--N~~~e~~~Af~~aGf~----~~~v~~~d--l~~~------------~~~l~~~~~lv~~GGFSyg 1113 (1310)
T TIGR01735 1054 VRPKVAILREQGV--NGDREMAAAFDRAGFE----AWDVHMSD--LLAG------------RVHLDEFRGLAACGGFSYG 1113 (1310)
T ss_pred CCceEEEEECCCC--CCHHHHHHHHHHhCCC----cEEEEEec--cccC------------CcchhheeEEEEcCCCCCc
Confidence 3479999944554 5677899999999874 34455542 1110 1147889999999998653
Q ss_pred CC--------------chHHHHHHHHH-HcCCCEEEEehhHHHHHHH
Q psy17159 124 GL--------------EGKIAACKWAR-ENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 124 ~~--------------~~~~~~i~~~~-~~~~PvLGIClG~QlL~~~ 155 (326)
+. ..+.+.++.++ +.+.++||||.|+|+|...
T Consensus 1114 D~lgsg~~~a~~i~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~~ 1160 (1310)
T TIGR01735 1114 DVLGAGKGWAKSILFNPRLRDQFQAFFKRPDTFSLGVCNGCQMLSNL 1160 (1310)
T ss_pred cchhHHHHHHHHHHhChHHHHHHHHHHhCCCceEEEecHHHHHHHHH
Confidence 21 23455666777 6789999999999999943
No 95
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=98.87 E-value=7.3e-09 Score=91.86 Aligned_cols=91 Identities=20% Similarity=0.219 Sum_probs=63.2
Q ss_pred chhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCC---C---CchHHHH
Q psy17159 58 EDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKR---G---LEGKIAA 131 (326)
Q Consensus 58 ~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~---~---~~~~~~~ 131 (326)
.=.|.....+|+++|++ +.++.+.. .+.+.++|+||||||.... . ..++.+.
T Consensus 10 ~f~y~e~~~~l~~~G~~------v~~~s~~~----------------~~~l~~~D~lilPGG~~~~~~~~L~~~~~~~~~ 67 (198)
T cd03130 10 NFYYPENLELLEAAGAE------LVPFSPLK----------------DEELPDADGLYLGGGYPELFAEELSANQSMRES 67 (198)
T ss_pred ccccHHHHHHHHHCCCE------EEEECCCC----------------CCCCCCCCEEEECCCchHHHHHHHHhhHHHHHH
Confidence 34578888899987763 34444210 1145569999999986431 1 1356788
Q ss_pred HHHHHHcCCCEEEEehhHHHHHHHh----C--cccccccCCcccc
Q psy17159 132 CKWARENNKPFLGICLGLQAAVIEY----G--RSVLGLKDADTEE 170 (326)
Q Consensus 132 i~~~~~~~~PvLGIClG~QlL~~~~----g--~~~l~~~~~~~~~ 170 (326)
|+++.++++|++|||.|||+|+... | .+.+|+.++.+..
T Consensus 68 i~~~~~~g~pilgICgG~qlL~~~~~d~~g~~~~glGll~~~~~~ 112 (198)
T cd03130 68 IRAFAESGGPIYAECGGLMYLGESLDDEEGQSYPMAGVLPGDARM 112 (198)
T ss_pred HHHHHHcCCCEEEEcccHHHHHHHhhccCCCEeccccccceeeEE
Confidence 8888889999999999999999653 3 2467887776543
No 96
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=98.56 E-value=2.2e-06 Score=79.83 Aligned_cols=210 Identities=17% Similarity=0.223 Sum_probs=102.9
Q ss_pred CceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCC-Cchhhcchhhhh--cCCCEEEECCCC
Q psy17159 44 KTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTG-NMAEYHKTWSDF--CKVDGIIVPGGF 120 (326)
Q Consensus 44 ~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~-~~~~~~~~~~~l--~~~dglilpGG~ 120 (326)
+.++|+|| ..= -+....-..|.+.-......|++.++...+-.....+. -..++-...+.+ ..+||+||+|.|
T Consensus 33 rpL~I~Il-NLM---P~K~~TE~Q~lrlL~~tplqv~v~f~~~~sh~~k~t~~~~l~~~Y~~~~~i~~~~~DglIITGAP 108 (298)
T PF04204_consen 33 RPLKIGIL-NLM---PDKEETERQFLRLLSNTPLQVEVTFLYPASHKSKNTSPEHLEKFYKTFDEIKDRKFDGLIITGAP 108 (298)
T ss_dssp --EEEEEE-------SSHHHHHHHHHHHCCSSSS-EEEEEE--S-----SS-HHHHHHHEE-HHHCTTS-EEEEEE---T
T ss_pred cceEEEEE-ecc---cchHHHHHHHHHHhcCCCCceEEEEEEeccccCCCCCHHHHHHhhhCHHHHhhCCCCEEEEeCCC
Confidence 34899999 442 24444545555554444567777777654432211110 011111122333 378999999986
Q ss_pred CC-------CCCchHHHHHHHHHHcCCCEEEEehhHHH-HHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCC
Q psy17159 121 GK-------RGLEGKIAACKWARENNKPFLGICLGLQA-AVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPG 192 (326)
Q Consensus 121 ~~-------~~~~~~~~~i~~~~~~~~PvLGIClG~Ql-L~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~ 192 (326)
-. +.+..+.+++.++.+.-.+.|.||.|.|. |...+|..-..+.. .
T Consensus 109 vE~l~Fe~V~YW~El~~i~dwa~~~v~stl~iCWgAqAaLy~~yGI~K~~l~~---------------K----------- 162 (298)
T PF04204_consen 109 VEQLPFEEVDYWDELTEIFDWAKTHVTSTLFICWGAQAALYHFYGIPKYPLPE---------------K----------- 162 (298)
T ss_dssp TTTS-GGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHH----EEEEE---------------E-----------
T ss_pred cCCCCcccCCcHHHHHHHHHHHHHcCCcchhhhHHHHHHHHHHcCCCcccCCC---------------c-----------
Confidence 43 12345677788888889999999999999 55555633211100 0
Q ss_pred CCCcceeecceeEEEecCCCchHHhhhCCCc-ceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeE
Q psy17159 193 NMGGTMRLGKHETHFKPEHKSKLKLLYGNKD-KIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYY 271 (326)
Q Consensus 193 ~~~~~~~lg~~~~~~~~~~~s~l~~~~~~~~-~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~ 271 (326)
..|-+........+.++.++ .... ...+||. .++.+.+. ...+++|+|.+++.. +..+..+++..
T Consensus 163 ------lfGVf~~~~~~~~~pLl~Gf-dd~f~~PhSR~t---~i~~~~i~--~~~~L~vLa~s~~~G-~~l~~~~d~r~- 228 (298)
T PF04204_consen 163 ------LFGVFEHRVLDPDHPLLRGF-DDTFFAPHSRYT---EIDRDDIK--KAPGLEVLAESEEAG-VFLVASKDGRQ- 228 (298)
T ss_dssp ------EEEEEEEEES-SS-GGGTT---SEEEEEEEEEE---E--HHHHC--T-TTEEEEEEETTTE-EEEEEECCCTE-
T ss_pred ------ceeceeeeccCCCChhhcCC-CccccCCccccc---CCCHHHHh--cCCCcEEEeccCCcc-eEEEEcCCCCE-
Confidence 01222222222202333333 2211 1233332 24433342 367999999998766 66777788776
Q ss_pred EEEcccCCCcCCCCCCChHHHHHHHHHHhhh
Q psy17159 272 VAVQFHPEYLSRPLRPSPPFLGLILAAAGKL 302 (326)
Q Consensus 272 ~GvQFHPE~~~~~~~~~~lf~~Fl~~a~~~~ 302 (326)
+=+|.|||+... .|-..+.+...+..
T Consensus 229 vfi~GH~EYd~~-----TL~~EY~RD~~~gl 254 (298)
T PF04204_consen 229 VFITGHPEYDAD-----TLAKEYRRDLAKGL 254 (298)
T ss_dssp EEE-S-TT--TT-----HHHHHHHHHHHCT-
T ss_pred EEEeCCCccChh-----HHHHHHHHHHhCCC
Confidence 789999999753 57778877776655
No 97
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.50 E-value=5.6e-07 Score=89.49 Aligned_cols=100 Identities=21% Similarity=0.281 Sum_probs=71.0
Q ss_pred ceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCC-
Q psy17159 45 TVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKR- 123 (326)
Q Consensus 45 ~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~- 123 (326)
.++|||+ ..-++.-.|....++|+.+|+ ++.++.+.. .+.+.++|+||||||....
T Consensus 245 ~~~iava-~d~af~f~y~e~~~~L~~~g~------~~~~~~~~~----------------~~~l~~~D~lilpGG~~~~~ 301 (451)
T PRK01077 245 GVRIAVA-RDAAFNFYYPENLELLRAAGA------ELVFFSPLA----------------DEALPDCDGLYLGGGYPELF 301 (451)
T ss_pred CceEEEE-ecCcccccHHHHHHHHHHCCC------EEEEeCCcC----------------CCCCCCCCEEEeCCCchhhH
Confidence 3699999 555666667888888887665 445665311 1146689999999996431
Q ss_pred -----CCchHHHHHHHHHHcCCCEEEEehhHHHHHHHh---Cc---ccccccCCc
Q psy17159 124 -----GLEGKIAACKWARENNKPFLGICLGLQAAVIEY---GR---SVLGLKDAD 167 (326)
Q Consensus 124 -----~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~---g~---~~l~~~~~~ 167 (326)
...++.+.|+++.++++|++|||.|+|+|+... .+ +.+|+.+..
T Consensus 302 ~~~l~~~~~~~~~i~~~~~~g~~i~aiCgG~~~L~~~i~d~~g~~~~~lGll~~~ 356 (451)
T PRK01077 302 AAELAANTSMRASIRAAAAAGKPIYAECGGLMYLGESLEDADGERHPMVGLLPGE 356 (451)
T ss_pred HHHHhhCchhHHHHHHHHHcCCCEEEEcHHHHHHHhhhcCCCCCeeeccccccee
Confidence 224578889999999999999999999999765 12 455665543
No 98
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=98.47 E-value=4.1e-07 Score=90.43 Aligned_cols=89 Identities=22% Similarity=0.248 Sum_probs=63.5
Q ss_pred ceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCC-
Q psy17159 45 TVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKR- 123 (326)
Q Consensus 45 ~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~- 123 (326)
+++|||+ ..-++.=.|..-..+|+..|+ +++++.+.. .+.+.++|+|+||||+...
T Consensus 244 ~~~Iava-~d~afnFy~~~~~~~L~~~g~------~~~~~~~~~----------------d~~l~~~d~l~ipGG~~~~~ 300 (449)
T TIGR00379 244 YVRIAVA-QDQAFNFYYQDNLDALTHNAA------ELVPFSPLE----------------DTELPDVDAVYIGGGFPELF 300 (449)
T ss_pred CcEEEEE-echhhceeHHHHHHHHHHCCC------EEEEECCcc----------------CCCCCCCCEEEeCCcHHHHH
Confidence 3789999 434443445666777876654 456666310 1246689999999997532
Q ss_pred -----CCchHHHHHHHHHHcCCCEEEEehhHHHHHHHh
Q psy17159 124 -----GLEGKIAACKWARENNKPFLGICLGLQAAVIEY 156 (326)
Q Consensus 124 -----~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~ 156 (326)
...++.+.|+.+.+.++|+||||.|||+|+...
T Consensus 301 ~~~l~~~~~~~~~i~~~~~~G~pv~g~CgG~~~L~~~i 338 (449)
T TIGR00379 301 AEELSQNQALRDSIKTFIHQGLPIYGECGGLMYLSQSL 338 (449)
T ss_pred HHHHHhhhHHHHHHHHHHHcCCCEEEEcHHHHHHHhhh
Confidence 123567889999899999999999999999764
No 99
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=98.45 E-value=4.5e-06 Score=91.57 Aligned_cols=92 Identities=14% Similarity=0.086 Sum_probs=63.7
Q ss_pred CCceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCC
Q psy17159 43 NKTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGK 122 (326)
Q Consensus 43 ~~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~ 122 (326)
..+.||+|+=..|. ..-.+..+|+..+|+. +..+++.. +.. -..+++++||+++||++.
T Consensus 927 ~~~p~VaIl~~pG~--N~~~e~~~Af~~aGf~----~~~v~~~d--l~~-------------~~~l~~f~glv~~Ggfsy 985 (1202)
T TIGR01739 927 DPRHQVAVLLLPGQ--SVPHGLLAALTNAGFD----PRIVSITE--LKK-------------TDFLDTFSGLIIGGASGT 985 (1202)
T ss_pred CCCCeEEEEeCCCC--CCHHHHHHHHHHcCCc----eEEEEecc--CCC-------------CCchhheEEEEEcCcCCC
Confidence 34578999944454 5578899999999874 34444442 111 014678999999999875
Q ss_pred CCC--------------chHHHHHHHHH-HcCCCEEEEeh-hHHHHHHH
Q psy17159 123 RGL--------------EGKIAACKWAR-ENNKPFLGICL-GLQAAVIE 155 (326)
Q Consensus 123 ~~~--------------~~~~~~i~~~~-~~~~PvLGICl-G~QlL~~~ 155 (326)
.+. ..+.+.++.++ +.+.++||||- |+|+|...
T Consensus 986 ~D~lgsg~~~a~~il~n~~~~~~~~~f~~r~dtf~LGiCN~G~Q~L~~l 1034 (1202)
T TIGR01739 986 LDSEVGARALAAALLRNQAFLRDLLTFLNRPDTFSLGFGELGCQLLLAL 1034 (1202)
T ss_pred CccchHHHHHHHHhhcchHHHHHHHHHHhCCCceEEEeCcHHHHHHHHc
Confidence 321 23455576777 45899999998 99999973
No 100
>PHA03366 FGAM-synthase; Provisional
Probab=98.45 E-value=3.4e-06 Score=92.93 Aligned_cols=93 Identities=14% Similarity=0.043 Sum_probs=65.5
Q ss_pred CCCceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCC
Q psy17159 42 LNKTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFG 121 (326)
Q Consensus 42 ~~~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~ 121 (326)
+..++||+|+-..|. ..-.+..+||..+|+. +..+++.. |... ..|++++||++||||+
T Consensus 1025 ~~~~prVaIl~~pG~--N~~~e~~~Af~~aGf~----~~~v~~~d--L~~~-------------~~l~~f~glv~~GGFS 1083 (1304)
T PHA03366 1025 PDKRHRVAVLLLPGC--PGPHALLAAFTNAGFD----PYPVSIEE--LKDG-------------TFLDEFSGLVIGGSSG 1083 (1304)
T ss_pred CCCCCeEEEEECCCC--CCHHHHHHHHHHcCCc----eEEEEeec--CCCC-------------CccccceEEEEcCCCC
Confidence 345689999955555 5678899999999974 34444441 1110 1278999999999987
Q ss_pred CCCC--------------chHHHHHHHHHH-cCCCEEEEeh-hHHHHHHH
Q psy17159 122 KRGL--------------EGKIAACKWARE-NNKPFLGICL-GLQAAVIE 155 (326)
Q Consensus 122 ~~~~--------------~~~~~~i~~~~~-~~~PvLGICl-G~QlL~~~ 155 (326)
..+. ..+.+.++.+++ .+.++||||- |+|+|+..
T Consensus 1084 ~gD~l~~~~~~a~~il~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q~L~~l 1133 (1304)
T PHA03366 1084 AEDSYTGARAAVAALLSNPAVRDALLRFLNRPDTFSLGCGELGCQILFAL 1133 (1304)
T ss_pred CcccccHHHHHHHHhhhchHHHHHHHHHHhCCCCeEEEeCcHHHHHHHHc
Confidence 6321 234566777774 5899999998 99999973
No 101
>PRK00784 cobyric acid synthase; Provisional
Probab=98.40 E-value=6e-07 Score=90.15 Aligned_cols=85 Identities=19% Similarity=0.291 Sum_probs=58.5
Q ss_pred ceEEEEEcccCCCchhHHHHHHHHHH-HhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCC
Q psy17159 45 TVTIGLVGKYTKFEDCYASLTRALEH-ASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKR 123 (326)
Q Consensus 45 ~~~I~iigdyg~~~~~~~Si~~aL~~-~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~ 123 (326)
+++|+|+ .|.. .-|+ .-+..|+. +|+ +++++.+. +.+.++|+|+||||+...
T Consensus 251 ~~~i~v~-~~~~-a~~f-~nl~~l~~~~g~------~v~~~s~~------------------~~l~~~d~lilpGg~~~~ 303 (488)
T PRK00784 251 ALRIAVI-RLPR-ISNF-TDFDPLRAEPGV------DVRYVRPG------------------EPLPDADLVILPGSKNTI 303 (488)
T ss_pred ceEEEEE-eCCC-cCCc-cChHHHhhcCCC------eEEEECCc------------------cccccCCEEEECCccchH
Confidence 4799999 5432 1244 33455655 554 34455531 146689999999997432
Q ss_pred C------CchHHHHHHHHHHcCCCEEEEehhHHHHHHHh
Q psy17159 124 G------LEGKIAACKWARENNKPFLGICLGLQAAVIEY 156 (326)
Q Consensus 124 ~------~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~ 156 (326)
. ..++.+.|+.+.+.++|+||||.|||+|+...
T Consensus 304 ~~~~~~~~~~l~~~i~~~~~~g~pilg~C~G~~~L~~~~ 342 (488)
T PRK00784 304 ADLAWLRESGWDEAIRAHARRGGPVLGICGGYQMLGRRI 342 (488)
T ss_pred HHHHHHHHcCHHHHHHHHHHcCCeEEEECHHHHHHhhhc
Confidence 1 23467788888889999999999999999764
No 102
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=98.27 E-value=8.1e-07 Score=75.93 Aligned_cols=50 Identities=28% Similarity=0.303 Sum_probs=41.5
Q ss_pred hhcCCCEEEECCCCCCC------CCchHHHHHHHHHHcCCCEEEEehhHHHHHHHh
Q psy17159 107 DFCKVDGIIVPGGFGKR------GLEGKIAACKWARENNKPFLGICLGLQAAVIEY 156 (326)
Q Consensus 107 ~l~~~dglilpGG~~~~------~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~ 156 (326)
.+.++|+|+||||.... ...++.+.|+++.+.++||+|||-|||+|+...
T Consensus 4 ~~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i 59 (158)
T PF07685_consen 4 LPPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESI 59 (158)
T ss_pred CCCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHH
Confidence 56799999999996432 124677889999999999999999999999754
No 103
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=98.23 E-value=1.9e-06 Score=86.27 Aligned_cols=50 Identities=22% Similarity=0.264 Sum_probs=40.4
Q ss_pred hhcCCCEEEECCCCCCC------CCchHHHHHHHHHHcCCCEEEEehhHHHHHHHh
Q psy17159 107 DFCKVDGIIVPGGFGKR------GLEGKIAACKWARENNKPFLGICLGLQAAVIEY 156 (326)
Q Consensus 107 ~l~~~dglilpGG~~~~------~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~ 156 (326)
.|.++|+||||||.... ...++.+.|+.+.+.+.||||||.|||+|+...
T Consensus 281 ~l~~~d~lilpGg~~~~~~~~~l~~~~~~~~i~~~~~~G~pvlgiCgG~q~Lg~~i 336 (475)
T TIGR00313 281 SLTGCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKEGGIVIGICGGYQMLGKEL 336 (475)
T ss_pred ccccCCEEEECCcchHHHHHHHHHhcChHHHHHHHHHcCCcEEEEcHHHHHhhhhh
Confidence 46789999999997432 123567888888889999999999999999753
No 104
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=98.21 E-value=4.9e-05 Score=70.61 Aligned_cols=205 Identities=14% Similarity=0.124 Sum_probs=107.6
Q ss_pred ceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCC-C-chhhcchhhh-hcCCCEEEECCCCC
Q psy17159 45 TVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTG-N-MAEYHKTWSD-FCKVDGIIVPGGFG 121 (326)
Q Consensus 45 ~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~-~-~~~~~~~~~~-l~~~dglilpGG~~ 121 (326)
.++|+|+ ..=. +....-..|.+.-......|++.++...+......+. . ...|....+. -..+||+||+|.|-
T Consensus 35 pL~I~IL-NLMP---~K~~TE~Q~lRlL~ntplqv~i~~~~~~sh~~k~t~~~hl~~fY~~f~~ik~~~fDGlIITGAPv 110 (300)
T TIGR01001 35 PLEILIL-NLMP---KKIETENQFLRLLSNSPLQVNITLLRTDSRKSKNTPIEHLNKFYTTFEAVKDRKFDGLIITGAPV 110 (300)
T ss_pred ceeEEEE-ecCC---ccHHHHHHHHHHhcCCCCceEEEEEEeccccCCCCCHHHHHHHhhCHHHHhcCCCCEEEEcCCCc
Confidence 4899999 4422 2333333333333333455666676654433221111 0 1123322222 15799999999863
Q ss_pred C-------CCCchHHHHHHHHHHcCCCEEEEehhHHHHHH-HhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCC
Q psy17159 122 K-------RGLEGKIAACKWARENNKPFLGICLGLQAAVI-EYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGN 193 (326)
Q Consensus 122 ~-------~~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~-~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~ 193 (326)
. ..+..+.+++.++...-..+|.||.|.|.... .+|-+-..+..--
T Consensus 111 E~l~FeeV~YW~El~~I~dwsk~~v~Stl~iCWaAqAaLy~~yGI~K~~l~~Kl-------------------------- 164 (300)
T TIGR01001 111 ELVPFEDVAYWEELTEIMEWSKHNVTSTMFICWAAQAGLKYFYGIPKYTLPEKL-------------------------- 164 (300)
T ss_pred CCCCcccCCcHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHcCCCccccCCce--------------------------
Confidence 2 12345677788888888999999999999554 4453211111000
Q ss_pred CCcceeecceeEEEecCCCchHHhhhCCCc-ceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEE
Q psy17159 194 MGGTMRLGKHETHFKPEHKSKLKLLYGNKD-KIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYV 272 (326)
Q Consensus 194 ~~~~~~lg~~~~~~~~~~~s~l~~~~~~~~-~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~ 272 (326)
.|-+....... ..++.++ .... ...+||.. ++.+.+.. .++++|+|.+++.. +-.+..++++. +
T Consensus 165 ------fGVf~h~~~~~-~pL~rGf-dd~f~~PhSR~t~---i~~~~i~~--~~~L~vla~s~e~G-~~l~~s~d~r~-v 229 (300)
T TIGR01001 165 ------SGVYKHDIAPD-SLLLRGF-DDFFLAPHSRYAD---FDAEDIDK--VTDLEILAESDEAG-VYLAANKDERN-I 229 (300)
T ss_pred ------EEeecCccCCC-CccccCC-CCccccCCCCCCC---CCHHHHhc--CCCCeEEecCCCcc-eEEEEcCCCCE-E
Confidence 01010000110 1222222 2211 12334432 33333332 36999999998766 66677777666 6
Q ss_pred EEcccCCCcCCCCCCChHHHHHHHHHH
Q psy17159 273 AVQFHPEYLSRPLRPSPPFLGLILAAA 299 (326)
Q Consensus 273 GvQFHPE~~~~~~~~~~lf~~Fl~~a~ 299 (326)
=++-|||+... .|-....+...
T Consensus 230 fi~GH~EYd~~-----TL~~EY~RD~~ 251 (300)
T TIGR01001 230 FVTGHPEYDAY-----TLHQEYVRDIG 251 (300)
T ss_pred EEcCCCccChh-----HHHHHHHHHHH
Confidence 69999999753 45555555444
No 105
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=98.17 E-value=5.4e-06 Score=74.27 Aligned_cols=93 Identities=17% Similarity=0.081 Sum_probs=59.5
Q ss_pred CceEEEEEcccCCC--chhHHHHHHHHHHH-hhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCC
Q psy17159 44 KTVTIGLVGKYTKF--EDCYASLTRALEHA-SYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGF 120 (326)
Q Consensus 44 ~~~~I~iigdyg~~--~~~~~Si~~aL~~~-g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~ 120 (326)
...+|++| -..+. .....++.++++.+ |+ ++....... ++ +..+.|.++|+|++|||.
T Consensus 30 ~~~~i~~I-ptAs~~~~~~~~~~~~a~~~l~G~----~~~~~~~~~----------~~----~~~~~l~~ad~I~l~GG~ 90 (212)
T cd03146 30 ARPKVLFV-PTASGDRDEYTARFYAAFESLRGV----EVSHLHLFD----------TE----DPLDALLEADVIYVGGGN 90 (212)
T ss_pred CCCeEEEE-CCCCCCHHHHHHHHHHHHhhccCc----EEEEEeccC----------cc----cHHHHHhcCCEEEECCch
Confidence 45799999 44431 12344566666666 54 333322211 00 124578899999999972
Q ss_pred CCC-----CCchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 121 GKR-----GLEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 121 ~~~-----~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
-.. ...++.++|+.+.++++|++|||.|+|+|+..
T Consensus 91 ~~~~~~~l~~~~l~~~l~~~~~~g~~i~G~SAGa~i~~~~ 130 (212)
T cd03146 91 TFNLLAQWREHGLDAILKAALERGVVYIGWSAGSNCWFPS 130 (212)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHCCCEEEEECHhHHhhCCC
Confidence 111 11356778888888899999999999999974
No 106
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=98.05 E-value=1.2e-06 Score=79.65 Aligned_cols=33 Identities=52% Similarity=0.986 Sum_probs=28.3
Q ss_pred cHHHHHHHhhcCCCCCCCeeeCCCCCcccccch
Q psy17159 4 TESVRAKISMFCHVTPENVIFNPDVKPIYKVRM 36 (326)
Q Consensus 4 ~~~~~~ki~~~~~~~~~~v~~~~~~~~~y~~p~ 36 (326)
++++|+|||+||+|+.++||+.+|+++||++|+
T Consensus 217 ~~~~k~KIalFc~V~~e~VI~~~Dv~sIYeVPl 249 (276)
T PF06418_consen 217 DEEIKEKIALFCNVPPENVISAPDVSSIYEVPL 249 (276)
T ss_dssp -HHHHHHHHHHCTS-GGGEEEEE--SSCCHHHH
T ss_pred CHHHHHHHHccCCCCHHHEEEcCCcccHHHHHH
Confidence 468999999999999999999999999999998
No 107
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=98.02 E-value=1.4e-05 Score=78.79 Aligned_cols=87 Identities=20% Similarity=0.263 Sum_probs=60.4
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCC-
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRG- 124 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~- 124 (326)
++|||.-| -+|.=.|..-++.|+++ ++ ++++.+-. .+.+.++|+|+||||+....
T Consensus 234 ~~iavA~D-~AF~FyY~enl~~L~~~-ae------lv~fSPl~----------------~~~lp~~D~l~lpGG~~e~~~ 289 (433)
T PRK13896 234 PTVAVARD-AAFCFRYPATIERLRER-AD------VVTFSPVA----------------GDPLPDCDGVYLPGGYPELHA 289 (433)
T ss_pred CeEEEEEc-CccceeCHHHHHHHHhc-Cc------EEEEcCCC----------------CCCCCCCCEEEeCCCchhhHH
Confidence 68999944 23334577777888877 53 33444310 12466899999999974421
Q ss_pred ----CchHHHHHHHHHHcCCCEEEEehhHHHHHHHh
Q psy17159 125 ----LEGKIAACKWARENNKPFLGICLGLQAAVIEY 156 (326)
Q Consensus 125 ----~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~ 156 (326)
..+..+.|+.+.+.++|++|||.|||+|+...
T Consensus 290 ~~L~~n~~~~~i~~~~~~G~pi~aeCGG~q~L~~~i 325 (433)
T PRK13896 290 DALADSPALDELADRAADGLPVLGECGGLMALAESL 325 (433)
T ss_pred HHHHhCCcHHHHHHHHHCCCcEEEEehHHHHhhccc
Confidence 12344788888899999999999999999754
No 108
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=98.00 E-value=1.1e-05 Score=65.16 Aligned_cols=43 Identities=30% Similarity=0.390 Sum_probs=33.6
Q ss_pred cCCCEEEECCCCCCCC-----CchHHHHHHHHHHcCCCEEEEehhHHHH
Q psy17159 109 CKVDGIIVPGGFGKRG-----LEGKIAACKWARENNKPFLGICLGLQAA 152 (326)
Q Consensus 109 ~~~dglilpGG~~~~~-----~~~~~~~i~~~~~~~~PvLGIClG~QlL 152 (326)
.++|.||+|||..... ..+ .+.|+++++.++|+||||+|.-+.
T Consensus 43 ~~ad~lVlPGGa~~~~~~~L~~~g-~~~i~~~v~~g~p~LGIClGAy~a 90 (114)
T cd03144 43 SKTALLVVPGGADLPYCRALNGKG-NRRIRNFVRNGGNYLGICAGAYLA 90 (114)
T ss_pred hCCCEEEECCCChHHHHHHHHhhC-cHHHHHHHHCCCcEEEEecCccce
Confidence 4899999999753321 124 678888888999999999998766
No 109
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=97.93 E-value=4.7e-05 Score=58.27 Aligned_cols=46 Identities=43% Similarity=0.682 Sum_probs=38.1
Q ss_pred hhcCCCEEEECCCCCCCC----CchHHHHHHHHHHcCCCEEEEehhHHHH
Q psy17159 107 DFCKVDGIIVPGGFGKRG----LEGKIAACKWARENNKPFLGICLGLQAA 152 (326)
Q Consensus 107 ~l~~~dglilpGG~~~~~----~~~~~~~i~~~~~~~~PvLGIClG~QlL 152 (326)
....+|+||+|||..... .....+.++++.+.++|++|+|.|+|++
T Consensus 43 ~~~~~d~lii~g~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~c~g~~~l 92 (115)
T cd01653 43 DLDDYDGLILPGGPGTPDDLARDEALLALLREAAAAGKPILGICLGAQLL 92 (115)
T ss_pred ChhccCEEEECCCCCchhhhccCHHHHHHHHHHHHcCCEEEEECchhHhH
Confidence 356899999999876543 2456778888888899999999999999
No 110
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=97.86 E-value=4.4e-05 Score=66.28 Aligned_cols=52 Identities=25% Similarity=0.255 Sum_probs=41.4
Q ss_pred hcCCCEEEECCCCCC-------CCCchHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcc
Q psy17159 108 FCKVDGIIVPGGFGK-------RGLEGKIAACKWARENNKPFLGICLGLQAAVIEYGRS 159 (326)
Q Consensus 108 l~~~dglilpGG~~~-------~~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~ 159 (326)
...+||+||+|.|-. ..+..+.+.+..+.+...|+||||.|+|+...+++|.
T Consensus 60 ~~~yDGlIITGApve~~~fe~v~Yw~El~~i~dwa~~~v~stl~iCWgaqaal~~~yGi 118 (175)
T cd03131 60 DAKFDGLIVTGAPVEHLPFEQVDYWEELTEILDWAKTHVTSTLFSCWAAMAALYYFYGI 118 (175)
T ss_pred ccCCCEEEEeCCCcccCCccccchHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCc
Confidence 468999999998743 1234566777888888999999999999999877654
No 111
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=97.86 E-value=0.0029 Score=61.15 Aligned_cols=93 Identities=18% Similarity=0.167 Sum_probs=58.9
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCC-
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRG- 124 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~- 124 (326)
|+|.|--+-|....+....+.+|++. +.....+..+++..+.. +| ....++.+|+|||.+.+.
T Consensus 1 mnVlVY~G~G~~~~sv~~~~~~Lr~~---l~p~y~V~~v~~~~l~~-----~p--------w~~~~~LlV~PGG~d~~y~ 64 (367)
T PF09825_consen 1 MNVLVYNGPGTSPESVRHTLESLRRL---LSPHYAVIPVTADELLN-----EP--------WQSKCALLVMPGGADLPYC 64 (367)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHHh---cCCCeEEEEeCHHHhhc-----Cc--------cccCCcEEEECCCcchHHH
Confidence 35666534444333444455555543 22245566666544322 11 246789999999987653
Q ss_pred --CchH-HHHHHHHHHcCCCEEEEehhHHHHHH
Q psy17159 125 --LEGK-IAACKWARENNKPFLGICLGLQAAVI 154 (326)
Q Consensus 125 --~~~~-~~~i~~~~~~~~PvLGIClG~QlL~~ 154 (326)
..+. .+.||++++++.-.||||.|.-.-+.
T Consensus 65 ~~l~~~g~~~Ir~fV~~GG~YlGiCAGaY~as~ 97 (367)
T PF09825_consen 65 RSLNGEGNRRIRQFVENGGGYLGICAGAYYASS 97 (367)
T ss_pred HhhChHHHHHHHHHHHcCCcEEEECcchhhhcc
Confidence 2233 67899999999999999999988773
No 112
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=97.76 E-value=3.6e-05 Score=75.96 Aligned_cols=87 Identities=16% Similarity=0.295 Sum_probs=55.8
Q ss_pred CCceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCC
Q psy17159 43 NKTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGK 122 (326)
Q Consensus 43 ~~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~ 122 (326)
+..++|+|+ .+.. --||..+ ..| ... ..+.+.++... ++|.++|.+||||.-.+
T Consensus 249 ~~~i~Iav~-~lp~-isNFtD~-dpL---~~~--~~v~v~~v~~~------------------~~l~~~dlvIlPGsk~t 302 (486)
T COG1492 249 KRAIRIAVI-RLPR-ISNFTDF-DPL---RAE--PDVRVRFVKPG------------------SDLRDADLVILPGSKNT 302 (486)
T ss_pred CCceEEEEe-cCCC-ccccccc-hhh---hcC--CCeEEEEeccC------------------CCCCCCCEEEeCCCccc
Confidence 355789999 5432 1233221 222 222 34566666632 26778999999997654
Q ss_pred CC------CchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 123 RG------LEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 123 ~~------~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
.. ..++.+.|.+....+.||+|||-|||||...
T Consensus 303 ~~DL~~lr~~g~d~~i~~~~~~~~~viGICGG~QmLG~~ 341 (486)
T COG1492 303 IADLKILREGGMDEKILEYARKGGDVIGICGGYQMLGRR 341 (486)
T ss_pred HHHHHHHHHcCHHHHHHHHHhCCCCEEEEcchHHhhhhh
Confidence 32 2355566666667799999999999999954
No 113
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=97.64 E-value=0.00014 Score=66.01 Aligned_cols=51 Identities=24% Similarity=0.294 Sum_probs=41.0
Q ss_pred hhhcCCCEEEECCCCCCC-----CCchHHHHHHHHHHcCCCEEEEehhHHHHHHHh
Q psy17159 106 SDFCKVDGIIVPGGFGKR-----GLEGKIAACKWARENNKPFLGICLGLQAAVIEY 156 (326)
Q Consensus 106 ~~l~~~dglilpGG~~~~-----~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~ 156 (326)
+.|..+|+|+++||.... ...++.+.|++++++++|++|+|.|+-+++...
T Consensus 75 ~~l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGAii~~~~i 130 (233)
T PRK05282 75 AAIENAEAIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWSAGANVAGPTI 130 (233)
T ss_pred HHHhcCCEEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEECHHHHhhhccc
Confidence 468899999999995332 124677889988999999999999999888643
No 114
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=97.60 E-value=0.00012 Score=65.98 Aligned_cols=49 Identities=27% Similarity=0.301 Sum_probs=40.6
Q ss_pred hcCCCEEEECCCCCCC--------------CCchHHHHHHHHHHcCCCEEEEehhHHHHHHHh
Q psy17159 108 FCKVDGIIVPGGFGKR--------------GLEGKIAACKWARENNKPFLGICLGLQAAVIEY 156 (326)
Q Consensus 108 l~~~dglilpGG~~~~--------------~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~ 156 (326)
.+++|+|+||||.+.. ......++++++.++++|+.+||.|-++|+.+.
T Consensus 83 ~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~ 145 (217)
T PRK11780 83 AEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKIL 145 (217)
T ss_pred hhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHh
Confidence 4589999999997631 134577889999999999999999999998765
No 115
>KOG1907|consensus
Probab=97.57 E-value=0.0014 Score=68.35 Aligned_cols=93 Identities=17% Similarity=0.210 Sum_probs=61.9
Q ss_pred CCceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCC
Q psy17159 43 NKTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGK 122 (326)
Q Consensus 43 ~~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~ 122 (326)
....||+|+-.-|. ..+..+..++.++|+.. +++.-.+ .|.. .-.|+++-||+++|||++
T Consensus 1056 s~~PkVAilREeGv--Ng~rEMa~af~~AgF~~---~DVtmtD--lL~G-------------~~~ld~frGlaf~GGFSY 1115 (1320)
T KOG1907|consen 1056 STAPKVAILREEGV--NGDREMAAAFYAAGFET---VDVTMTD--LLAG-------------RHHLDDFRGLAFCGGFSY 1115 (1320)
T ss_pred cCCCceEEeecccc--ccHHHHHHHHHHcCCce---eeeeeeh--hhcC-------------ceeHhHhcceeeecCcch
Confidence 33579999977776 67899999999999852 2222211 1111 125789999999999865
Q ss_pred CC-------C-------chHHHHHHHHH-HcCCCEEEEehhHHHHHHH
Q psy17159 123 RG-------L-------EGKIAACKWAR-ENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 123 ~~-------~-------~~~~~~i~~~~-~~~~PvLGIClG~QlL~~~ 155 (326)
.+ + +........+. ..+.--||||.|.|+|+..
T Consensus 1116 aDvLgSakGWAasil~ne~v~~QF~~F~~R~DtFslGiCNGCQlms~L 1163 (1320)
T KOG1907|consen 1116 ADVLGSAKGWAASILFNESVRSQFEAFFNRQDTFSLGICNGCQLMSRL 1163 (1320)
T ss_pred HhhhccccchhhheeeChhHHHHHHHHhcCCCceeeecccHhHHHHHh
Confidence 31 1 22333333333 3467789999999999974
No 116
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=97.51 E-value=0.00018 Score=64.47 Aligned_cols=55 Identities=25% Similarity=0.317 Sum_probs=42.9
Q ss_pred hcCCCEEEECCCCCCC--------------CCchHHHHHHHHHHcCCCEEEEehhHHHHHHHh--Cccccc
Q psy17159 108 FCKVDGIIVPGGFGKR--------------GLEGKIAACKWARENNKPFLGICLGLQAAVIEY--GRSVLG 162 (326)
Q Consensus 108 l~~~dglilpGG~~~~--------------~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~--g~~~l~ 162 (326)
++++|+|+||||.+.. ....+.++++++.++++|+.+||.|-++|+.+. |+++.+
T Consensus 80 ~~dyDalviPGG~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~~kGr~vT~ 150 (213)
T cd03133 80 AADFDALIFPGGFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKILGEGVEVTI 150 (213)
T ss_pred HhHCCEEEECCCCchhhhhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHhccCCeEEc
Confidence 4579999999997531 123577889999999999999999999998865 444433
No 117
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=97.46 E-value=0.00014 Score=53.04 Aligned_cols=46 Identities=43% Similarity=0.676 Sum_probs=36.7
Q ss_pred hhcCCCEEEECCCCCCCCC----chHHHHHHHHHHcCCCEEEEehhHHHH
Q psy17159 107 DFCKVDGIIVPGGFGKRGL----EGKIAACKWARENNKPFLGICLGLQAA 152 (326)
Q Consensus 107 ~l~~~dglilpGG~~~~~~----~~~~~~i~~~~~~~~PvLGIClG~QlL 152 (326)
...++|+||+|||.+.... ....+.+.+..+.++|++|+|.|+|++
T Consensus 43 ~~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~ 92 (92)
T cd03128 43 DLDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQLL 92 (92)
T ss_pred CcccCCEEEECCCCcchhhhccCHHHHHHHHHHHHcCCEEEEEecccccC
Confidence 3568999999999776432 456777877778899999999999874
No 118
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=97.33 E-value=0.0044 Score=55.10 Aligned_cols=57 Identities=35% Similarity=0.356 Sum_probs=41.9
Q ss_pred cCCCEEEECCCCCCC------CCchHHHHHHHHHHcCCCEEEEehhHHHHHHH----hCccc--ccccC
Q psy17159 109 CKVDGIIVPGGFGKR------GLEGKIAACKWARENNKPFLGICLGLQAAVIE----YGRSV--LGLKD 165 (326)
Q Consensus 109 ~~~dglilpGG~~~~------~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~----~g~~~--l~~~~ 165 (326)
+.+|-+++.||.+.. ........++.+++.++|+|.||.|+|+|... .|.++ +|+.+
T Consensus 51 ~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~QlLG~yY~~a~G~ri~GlGiLd 119 (250)
T COG3442 51 DSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQLLGQYYETASGTRIDGLGILD 119 (250)
T ss_pred ccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhhccceeecCCCcEeeccccee
Confidence 688999999986542 11234567888999999999999999999953 45544 45444
No 119
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=97.24 E-value=0.00041 Score=60.22 Aligned_cols=46 Identities=30% Similarity=0.457 Sum_probs=38.6
Q ss_pred CCCEEEECCCCCCCC---CchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 110 KVDGIIVPGGFGKRG---LEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 110 ~~dglilpGG~~~~~---~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
.+|+|+||||++... ......+|+++.+.++|+.|||.|.++|+.+
T Consensus 76 ~~D~liv~GG~~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~a 124 (180)
T cd03169 76 DYDALVIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGPQILAAA 124 (180)
T ss_pred HCCEEEEcCCCChhhhccCHHHHHHHHHHHHcCCEEEEECcHHHHHHHc
Confidence 689999999976422 2356788999999999999999999999985
No 120
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=97.14 E-value=0.0008 Score=61.14 Aligned_cols=48 Identities=15% Similarity=0.084 Sum_probs=40.3
Q ss_pred hcCCCEEEECCCCCC----CCCchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 108 FCKVDGIIVPGGFGK----RGLEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 108 l~~~dglilpGG~~~----~~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
.+++|+|+||||.+. .....+.++++++.+.++|+-.||.|-++|..+
T Consensus 92 ~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a 143 (231)
T cd03147 92 PDDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAILANL 143 (231)
T ss_pred HhhCcEEEECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhh
Confidence 468999999999753 233457788999999999999999999999875
No 121
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=97.07 E-value=0.0044 Score=51.48 Aligned_cols=46 Identities=20% Similarity=0.202 Sum_probs=38.4
Q ss_pred CCCEEEECCCCCCC----CCchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 110 KVDGIIVPGGFGKR----GLEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 110 ~~dglilpGG~~~~----~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
++|.||||||.+.. ......++++++.++++|+.+||-|-.+|+.+
T Consensus 62 ~~D~liVpGg~~~~~~~~~~~~l~~~l~~~~~~~~~I~aic~G~~~La~a 111 (142)
T cd03132 62 LFDAVVVPGGAEAAFALAPSGRALHFVTEAFKHGKPIGAVGEGSDLLEAA 111 (142)
T ss_pred hcCEEEECCCccCHHHHccChHHHHHHHHHHhcCCeEEEcCchHHHHHHc
Confidence 58999999987542 23457788999889999999999999999974
No 122
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=97.06 E-value=0.00081 Score=57.31 Aligned_cols=46 Identities=24% Similarity=0.393 Sum_probs=38.5
Q ss_pred CCCEEEECCCCCCC---CCchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 110 KVDGIIVPGGFGKR---GLEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 110 ~~dglilpGG~~~~---~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
++|+|+||||++.. ....+.++|+++.++++|+.|||.|.++|+.+
T Consensus 60 ~~D~vvv~Gg~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~a 108 (166)
T TIGR01382 60 EYDALVIPGGRAPEYLRLNNKAVRLVREFVEKGKPVAAICHGPQLLISA 108 (166)
T ss_pred HCcEEEECCCCCHHHhccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhc
Confidence 68999999997632 22457888999989999999999999999974
No 123
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=96.90 E-value=0.0015 Score=55.61 Aligned_cols=47 Identities=23% Similarity=0.366 Sum_probs=38.7
Q ss_pred cCCCEEEECCCCCCC---CCchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 109 CKVDGIIVPGGFGKR---GLEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 109 ~~~dglilpGG~~~~---~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
.++|+|+||||++.. .......+|+++.+.++|+.|||.|.++|+.+
T Consensus 61 ~~~D~lvvpGG~~~~~~~~~~~~~~~l~~~~~~~~~i~~ic~G~~~La~a 110 (165)
T cd03134 61 DDYDALVIPGGTNPDKLRRDPDAVAFVRAFAEAGKPVAAICHGPWVLISA 110 (165)
T ss_pred HHCCEEEECCCCChhhhccCHHHHHHHHHHHHcCCeEEEEchHHHHHHhc
Confidence 368999999997532 22457788999999999999999999999874
No 124
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=96.82 E-value=0.0016 Score=56.86 Aligned_cols=47 Identities=26% Similarity=0.408 Sum_probs=40.2
Q ss_pred cCCCEEEECCC-CCCCC---CchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 109 CKVDGIIVPGG-FGKRG---LEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 109 ~~~dglilpGG-~~~~~---~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
+++|+|++||| .+... .....+.++++.+.++||..||.|-++|..+
T Consensus 65 ~~ydal~ipGG~~~~~~~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~~a 115 (188)
T COG0693 65 ADYDALVIPGGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVLAAA 115 (188)
T ss_pred hHCCEEEECCCccchhhccCcHHHHHHHHHHHHcCCEEEEEChhHHHHhcc
Confidence 48999999999 66532 2457889999999999999999999999975
No 125
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=96.79 E-value=0.00092 Score=56.11 Aligned_cols=47 Identities=30% Similarity=0.454 Sum_probs=37.4
Q ss_pred cCCCEEEECCCCCC----CCC-chHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 109 CKVDGIIVPGGFGK----RGL-EGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 109 ~~~dglilpGG~~~----~~~-~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
.++|+||||||.+. +.. ..+.++++++.+.++|+.+||.|-.+|+.+
T Consensus 36 ~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~~~L~~~ 87 (147)
T PF01965_consen 36 SDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHGPAVLAAA 87 (147)
T ss_dssp GGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTCHHHHHHT
T ss_pred hhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCCcchhhcc
Confidence 47999999999763 213 467888999999999999999999888875
No 126
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=96.78 E-value=0.025 Score=55.34 Aligned_cols=88 Identities=23% Similarity=0.278 Sum_probs=63.9
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhc-CCCEEEECCCCCC--
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFC-KVDGIIVPGGFGK-- 122 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~-~~dglilpGG~~~-- 122 (326)
.||+|.-| .+|.=.|..-++.|+.+|++ ++++.+- . .+.+. ++|+|.|+||+-.
T Consensus 246 ~rIAVA~D-~AF~FyY~~nl~~Lr~~GAe------lv~FSPL--~--------------D~~lP~~~D~vYlgGGYPElf 302 (451)
T COG1797 246 VRIAVARD-AAFNFYYPENLELLREAGAE------LVFFSPL--A--------------DEELPPDVDAVYLGGGYPELF 302 (451)
T ss_pred ceEEEEec-chhccccHHHHHHHHHCCCE------EEEeCCc--C--------------CCCCCCCCCEEEeCCCChHHH
Confidence 79999933 23334588888999999884 3445431 1 12455 6999999999632
Q ss_pred ----CCCchHHHHHHHHHHcCCCEEEEehhHHHHHHHh
Q psy17159 123 ----RGLEGKIAACKWARENNKPFLGICLGLQAAVIEY 156 (326)
Q Consensus 123 ----~~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~ 156 (326)
.....+.+.|+.+.+.++|++|=|-|+--|+..+
T Consensus 303 A~~L~~n~~~~~~i~~~~~~G~piyaECGGlMYL~~~l 340 (451)
T COG1797 303 AEELSANESMRRAIKAFAAAGKPIYAECGGLMYLGESL 340 (451)
T ss_pred HHHHhhCHHHHHHHHHHHHcCCceEEecccceeehhhe
Confidence 1234577889999999999999999999888654
No 127
>PRK04155 chaperone protein HchA; Provisional
Probab=96.70 E-value=0.0023 Score=59.99 Aligned_cols=48 Identities=27% Similarity=0.521 Sum_probs=39.9
Q ss_pred hcCCCEEEECCCCCC----CCCchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 108 FCKVDGIIVPGGFGK----RGLEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 108 l~~~dglilpGG~~~----~~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
.+++|+|+||||.+. +....+.++++++.++++||..||.|-++|..+
T Consensus 145 ~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~a 196 (287)
T PRK04155 145 DSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPAALLAA 196 (287)
T ss_pred cccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence 358999999999764 334567888999999999999999999977764
No 128
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=96.69 E-value=0.0027 Score=57.70 Aligned_cols=48 Identities=25% Similarity=0.487 Sum_probs=39.6
Q ss_pred hcCCCEEEECCCCCC----CCCchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 108 FCKVDGIIVPGGFGK----RGLEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 108 l~~~dglilpGG~~~----~~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
.+++|+|+||||.+. +....+.++++++.++++||-.||.|-++|..+
T Consensus 94 ~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~a 145 (232)
T cd03148 94 DSEYAAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFLAA 145 (232)
T ss_pred hhhceEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHHhc
Confidence 358999999999654 234567788999999999999999999987754
No 129
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=96.67 E-value=0.0031 Score=56.82 Aligned_cols=49 Identities=24% Similarity=0.271 Sum_probs=40.5
Q ss_pred hcCCCEEEECCCCCCC----CCchHHHHHHHHHHcCCCEEEEehhHHHHHHHh
Q psy17159 108 FCKVDGIIVPGGFGKR----GLEGKIAACKWARENNKPFLGICLGLQAAVIEY 156 (326)
Q Consensus 108 l~~~dglilpGG~~~~----~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~ 156 (326)
++++|+|+||||.+.. ....+.++|+.+.++++++.+||.|-.+|+.+.
T Consensus 88 ~~~~dal~ipGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~ag 140 (221)
T cd03141 88 PSDYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLNVK 140 (221)
T ss_pred HhHceEEEECCCcccccccccCHHHHHHHHHHHHcCCEEEEEcchHHHHHhcc
Confidence 3579999999997532 234578899999999999999999999999763
No 130
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=96.58 E-value=0.012 Score=52.33 Aligned_cols=95 Identities=14% Similarity=0.081 Sum_probs=58.4
Q ss_pred CceEEEEEcccCCCc--hhHHHHHHHHHHHhhhcCCceEEEE-eecccccCCCCCCCchhhcchhhhhcCCCEEEECCCC
Q psy17159 44 KTVTIGLVGKYTKFE--DCYASLTRALEHASYHSNRHLQLKY-FDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGF 120 (326)
Q Consensus 44 ~~~~I~iigdyg~~~--~~~~Si~~aL~~~g~~~~~~v~~~~-i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~ 120 (326)
...+|++| ...+.. +....+.++++..|+. +.... ++. .+++ +..+.|.++|+|+++||-
T Consensus 28 ~~~~i~~i-ptA~~~~~~~~~~~~~~~~~lG~~----~~~~~~~~~--------~~~~----~~~~~l~~ad~I~~~GG~ 90 (210)
T cd03129 28 AGARVLFI-PTASGDRDEYGEEYRAAFERLGVE----VVHLLLIDT--------ANDP----DVVARLLEADGIFVGGGN 90 (210)
T ss_pred CCCeEEEE-eCCCCChHHHHHHHHHHHHHcCCc----eEEEeccCC--------CCCH----HHHHHHhhCCEEEEcCCc
Confidence 35789999 544311 2344456666666553 23222 221 0111 145578999999999984
Q ss_pred CCC-----CCchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 121 GKR-----GLEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 121 ~~~-----~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
-.. ...+..+.|.+...++.|+.|+|.|..+|+..
T Consensus 91 ~~~~~~~l~~t~~~~~i~~~~~~G~v~~G~SAGA~~~~~~ 130 (210)
T cd03129 91 QLRLLSVLRETPLLDAILKRVARGVVIGGTSAGAAVMGET 130 (210)
T ss_pred HHHHHHHHHhCChHHHHHHHHHcCCeEEEcCHHHHHhhhc
Confidence 221 11235566666666899999999999999975
No 131
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=96.56 E-value=0.005 Score=53.47 Aligned_cols=49 Identities=22% Similarity=0.309 Sum_probs=40.8
Q ss_pred hhcCCCEEEECCCCCCC---CCchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 107 DFCKVDGIIVPGGFGKR---GLEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 107 ~l~~~dglilpGG~~~~---~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
.+.++|.||||||.+.. ....+.+.|+++.++++++.+||-|-++|+.+
T Consensus 61 ~~~~~D~liipGg~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~a 112 (187)
T cd03137 61 ALAAADTVIVPGGPDVDGRPPPPALLAALRRAAARGARVASVCTGAFVLAEA 112 (187)
T ss_pred ccCCCCEEEECCCcccccccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence 45689999999986643 23567888998888999999999999999975
No 132
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=96.47 E-value=0.0051 Score=52.82 Aligned_cols=47 Identities=23% Similarity=0.232 Sum_probs=39.1
Q ss_pred cCCCEEEECCCCCCC--CCchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 109 CKVDGIIVPGGFGKR--GLEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 109 ~~~dglilpGG~~~~--~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
.++|.|+||||+... ......++|+++.++++++.+||-|.++|+.+
T Consensus 59 ~~~D~l~I~Gg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 107 (170)
T cd03140 59 EDYDLLILPGGDSWDNPEAPDLAGLVRQALKQGKPVAAICGATLALARA 107 (170)
T ss_pred hHccEEEEcCCcccccCCcHHHHHHHHHHHHcCCEEEEEChHHHHHHHC
Confidence 578999999996532 23457788999889999999999999999985
No 133
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=96.36 E-value=0.0071 Score=52.89 Aligned_cols=49 Identities=24% Similarity=0.222 Sum_probs=39.7
Q ss_pred hhcCCCEEEECCCCCCC------CCchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 107 DFCKVDGIIVPGGFGKR------GLEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 107 ~l~~~dglilpGG~~~~------~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
...++|.||||||.+.. ......++++++.++++++.+||-|..+|+.+
T Consensus 66 ~~~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 120 (195)
T cd03138 66 DVPAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEA 120 (195)
T ss_pred ccCCCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHHHc
Confidence 45689999999986532 23457788888888999999999999999974
No 134
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=96.14 E-value=0.0083 Score=50.61 Aligned_cols=47 Identities=26% Similarity=0.349 Sum_probs=39.2
Q ss_pred cCCCEEEECCCC-CCC---CCchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 109 CKVDGIIVPGGF-GKR---GLEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 109 ~~~dglilpGG~-~~~---~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
.++|.||||||+ +.. ......++++++.++++++.+||-|..+|+.+
T Consensus 59 ~~~D~liipGg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~g~~~La~a 109 (163)
T cd03135 59 DDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKGKLIAAICAAPAVLAKA 109 (163)
T ss_pred CCCCEEEECCCCchHHHHHhCHHHHHHHHHHHHcCCEEEEEchhHHHHHHc
Confidence 579999999997 322 23457888998889999999999999999985
No 135
>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]
Probab=96.02 E-value=0.17 Score=46.12 Aligned_cols=194 Identities=18% Similarity=0.194 Sum_probs=98.4
Q ss_pred ceEEEEEcccCCCchhHHHH-HHHHHHHhhh-cCCceEEEEeecccccCCCCCCC-chhhcchhhhh--cCCCEEEECCC
Q psy17159 45 TVTIGLVGKYTKFEDCYASL-TRALEHASYH-SNRHLQLKYFDSELLSMDPKTGN-MAEYHKTWSDF--CKVDGIIVPGG 119 (326)
Q Consensus 45 ~~~I~iigdyg~~~~~~~Si-~~aL~~~g~~-~~~~v~~~~i~~~~l~~~~~~~~-~~~~~~~~~~l--~~~dglilpGG 119 (326)
.++|+|+ ..- -+.... ..-|+.+|.. +.++++..++++-.-.. +-.+. ...|.. .+.+ ..+||+||.|.
T Consensus 35 PL~Ilil-NLM---P~Ki~TE~Q~lRLL~nsPLQV~itll~~~sh~~Kn-Tp~eHl~~FY~t-feeVk~~~FDG~IiTGA 108 (307)
T COG1897 35 PLKILIL-NLM---PKKIETETQILRLLGNSPLQVDITLLRIDSHESKN-TPAEHLNSFYCT-FEEVKDQKFDGLIITGA 108 (307)
T ss_pred cceeeee-ecC---chhHHHHHHHHHHhcCCCceEEEEEEEecCcCCCC-CcHHHHHHHhhc-HHHHhhcccCceEEeCC
Confidence 4789999 443 233333 3344444432 23344455555322110 00000 112222 2333 47999999998
Q ss_pred CCCC-------CCchHHHHHHHHHHcCCCEEEEehhHHHHHHHh-CcccccccCCcccccCCCCCCccCCeeeccCCCCC
Q psy17159 120 FGKR-------GLEGKIAACKWARENNKPFLGICLGLQAAVIEY-GRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNP 191 (326)
Q Consensus 120 ~~~~-------~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~-g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~ 191 (326)
|-.. .++.+.+.+.+....=--.|=||.|.|.--..+ |..-..+.. . .
T Consensus 109 Pve~l~feeV~YW~el~~I~eWskt~V~STl~ICWgaqAaly~~yGv~K~~l~~---------------K-l-------- 164 (307)
T COG1897 109 PVELLPFEEVAYWEELKQIFEWSKTHVTSTLHICWGAQAALYYFYGVPKYTLPE---------------K-L-------- 164 (307)
T ss_pred cccccCchhhhhHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHcCCCccccch---------------h-h--------
Confidence 6321 123344555555444577899999999876554 322111110 0 0
Q ss_pred CCCCcceeecceeEEEecCCCchHHhhhCCCc-ceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCe
Q psy17159 192 GNMGGTMRLGKHETHFKPEHKSKLKLLYGNKD-KIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPY 270 (326)
Q Consensus 192 ~~~~~~~~lg~~~~~~~~~~~s~l~~~~~~~~-~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~ 270 (326)
.|-+.-....+ ++++.+.+.... ...+||. .++.+.+.. -.++++++.++... +..+..++.+-
T Consensus 165 --------~GVy~h~~l~p-~~~l~rGfdd~f~~PhSR~t---~~~~e~i~~--~~~LeIL~es~e~G-~~l~a~k~~r~ 229 (307)
T COG1897 165 --------SGVYKHDILSP-HSLLTRGFDDSFLAPHSRYT---DVPKEDILA--VPDLEILAESKEAG-VYLLASKDGRN 229 (307)
T ss_pred --------hceeeccccCc-cchhhccCCccccCcccccc---cCCHHHHhh--CCCceeeecccccc-eEEEecCCCCe
Confidence 01111111222 555555554421 1123332 244444554 36899999997655 55566666664
Q ss_pred EEEEcccCCCcCCC
Q psy17159 271 YVAVQFHPEYLSRP 284 (326)
Q Consensus 271 ~~GvQFHPE~~~~~ 284 (326)
+=+--|||+..+.
T Consensus 230 -ifv~gH~EYD~~t 242 (307)
T COG1897 230 -IFVTGHPEYDATT 242 (307)
T ss_pred -EEEeCCcchhhhH
Confidence 5667799997653
No 136
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=95.92 E-value=0.016 Score=50.81 Aligned_cols=46 Identities=15% Similarity=0.299 Sum_probs=36.7
Q ss_pred cCCCEEEECCCCCC-C---CCchHHHHHHHHHHcCCCEEEEehhHHHHHH
Q psy17159 109 CKVDGIIVPGGFGK-R---GLEGKIAACKWARENNKPFLGICLGLQAAVI 154 (326)
Q Consensus 109 ~~~dglilpGG~~~-~---~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~ 154 (326)
.++|.|+||||++. . ....+.++++++.++++++.+||-|..+|..
T Consensus 65 ~~~D~l~ipGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~ 114 (196)
T PRK11574 65 GDFDVIVLPGGIKGAECFRDSPLLVETVRQFHRSGRIVAAICAAPATVLV 114 (196)
T ss_pred CCCCEEEECCCCchhhhhhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHH
Confidence 47999999998643 1 2235788899999999999999999997554
No 137
>PRK11249 katE hydroperoxidase II; Provisional
Probab=95.86 E-value=0.072 Score=56.01 Aligned_cols=102 Identities=16% Similarity=0.083 Sum_probs=60.2
Q ss_pred CceEEEEEcccCCCc-hhHHHHHHHHHHHhhhcCCceEEEEeecccccC---CCCCCCchhhcchhhhh--cCCCEEEEC
Q psy17159 44 KTVTIGLVGKYTKFE-DCYASLTRALEHASYHSNRHLQLKYFDSELLSM---DPKTGNMAEYHKTWSDF--CKVDGIIVP 117 (326)
Q Consensus 44 ~~~~I~iigdyg~~~-~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~---~~~~~~~~~~~~~~~~l--~~~dglilp 117 (326)
++.||+|| =+..+. ..+..+..+|+.+|+ .+.++....-.+.. ..+..+ ...+.. ..+|+|+||
T Consensus 596 ~gRKIaIL-VaDG~d~~ev~~~~daL~~AGa----~V~VVSp~~G~V~~s~G~~I~aD-----~t~~~~~Sv~FDAVvVP 665 (752)
T PRK11249 596 KGRKVAIL-LNDGVDAADLLAILKALKAKGV----HAKLLYPRMGEVTADDGTVLPIA-----ATFAGAPSLTFDAVIVP 665 (752)
T ss_pred cccEEEEE-ecCCCCHHHHHHHHHHHHHCCC----EEEEEECCCCeEECCCCCEEecc-----eeeccCCccCCCEEEEC
Confidence 45789998 332222 345667777777665 33443322111110 000000 001111 258999999
Q ss_pred CCCCCC----CCchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 118 GGFGKR----GLEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 118 GG~~~~----~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
||.... .....+.+|+++.+..++|.+||-|.++|+.+
T Consensus 666 GG~~~~~~L~~d~~al~fL~eaykHgK~IAAiCaG~~LLaaA 707 (752)
T PRK11249 666 GGKANIADLADNGDARYYLLEAYKHLKPIALAGDARKLKAAL 707 (752)
T ss_pred CCchhHHHHhhCHHHHHHHHHHHHcCCEEEEeCccHHHHHhc
Confidence 986432 22357788999999999999999999999974
No 138
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=95.83 E-value=0.014 Score=50.34 Aligned_cols=48 Identities=21% Similarity=0.278 Sum_probs=38.9
Q ss_pred hcCCCEEEECCCCCCC---CCchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 108 FCKVDGIIVPGGFGKR---GLEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 108 l~~~dglilpGG~~~~---~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
...+|.||||||.+.. ......++++++.++++++.+||.|..+|+.+
T Consensus 60 ~~~~D~lvipgg~~~~~~~~~~~~~~~l~~~~~~~k~i~aic~g~~~La~a 110 (183)
T cd03139 60 PPDLDVLLVPGGGGTRALVNDPALLDFIRRQAARAKYVTSVCTGALLLAAA 110 (183)
T ss_pred CCCCCEEEECCCcchhhhccCHHHHHHHHHhcccCCEEEEEchHHHHHHhc
Confidence 4579999999996543 23457788888888999999999999988874
No 139
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=95.75 E-value=0.021 Score=49.53 Aligned_cols=49 Identities=24% Similarity=0.209 Sum_probs=40.0
Q ss_pred hhcCCCEEEECCCCCCC--CCchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 107 DFCKVDGIIVPGGFGKR--GLEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 107 ~l~~~dglilpGG~~~~--~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
...++|.||||||.+.. .....+++++.+.++++.+.+||-|..+|+.+
T Consensus 61 ~~~~~D~liipgg~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~La~a 111 (185)
T cd03136 61 DAPPLDYLFVVGGLGARRAVTPALLAWLRRAARRGVALGGIDTGAFLLARA 111 (185)
T ss_pred ccCCCCEEEEeCCCCccccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence 34578999999986542 23457888998888999999999999999974
No 140
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=95.74 E-value=0.011 Score=50.31 Aligned_cols=49 Identities=20% Similarity=0.213 Sum_probs=38.8
Q ss_pred hhcCCCEEEECCCCCC---CCCchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 107 DFCKVDGIIVPGGFGK---RGLEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 107 ~l~~~dglilpGG~~~---~~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
....+|.||||||++. .....+.+.+++..+++.++.|||-|..+|+.+
T Consensus 58 ~~~~~D~lvvpg~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 109 (166)
T PF13278_consen 58 DAPDFDILVVPGGPGFDAAAKDPALLDWLRQQHAQGTYIAAICTGALLLAEA 109 (166)
T ss_dssp CCSCCSEEEEE-STTHHHHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHHT
T ss_pred hcccCCEEEeCCCCCchhcccCHHHHHHhhhhhccceEEeeeehHHHHHhhh
Confidence 4568999999999881 233457788888778899999999999999986
No 141
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=95.66 E-value=0.017 Score=49.70 Aligned_cols=48 Identities=21% Similarity=0.320 Sum_probs=39.0
Q ss_pred hcCCCEEEECCCCCC----CCCchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 108 FCKVDGIIVPGGFGK----RGLEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 108 l~~~dglilpGG~~~----~~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
..++|.|+||||... .....+.++++++.++++++.+||-|-.+|+.+
T Consensus 61 ~~~~D~l~v~Gg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~a 112 (179)
T TIGR01383 61 LEEFDAIVLPGGMPGAENLRNSKLLLNILKKQESKGKLVAAICAAPAVLLAA 112 (179)
T ss_pred cccCCEEEECCCchHHHHHhhCHHHHHHHHHHHHCCCEEEEEChhHHHHHhc
Confidence 457999999998532 123457788999889999999999999999985
No 142
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=94.90 E-value=0.052 Score=51.41 Aligned_cols=49 Identities=22% Similarity=0.287 Sum_probs=39.7
Q ss_pred hhcCCCEEEECCCCCCC--CCchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 107 DFCKVDGIIVPGGFGKR--GLEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 107 ~l~~~dglilpGG~~~~--~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
.+.++|.||||||.+.. ....+.++|+.+.+.+++|.|||-|.-+|+.+
T Consensus 72 ~~~~~D~livpGg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~a 122 (322)
T PRK09393 72 LLDRADTIVIPGWRGPDAPVPEPLLEALRAAHARGARLCSICSGVFVLAAA 122 (322)
T ss_pred ccCCCCEEEECCCCcccccCCHHHHHHHHHHHHcCCEEEEEcHHHHHHHhc
Confidence 46689999999986532 23457788888888899999999999999975
No 143
>KOG2764|consensus
Probab=93.49 E-value=0.13 Score=46.27 Aligned_cols=46 Identities=33% Similarity=0.406 Sum_probs=35.8
Q ss_pred cCCCEEEECCC-CCCCC---CchHHHHHHHHHHcCCCEEEEehhHHHHHH
Q psy17159 109 CKVDGIIVPGG-FGKRG---LEGKIAACKWARENNKPFLGICLGLQAAVI 154 (326)
Q Consensus 109 ~~~dglilpGG-~~~~~---~~~~~~~i~~~~~~~~PvLGIClG~QlL~~ 154 (326)
+.||.|||||| +|... .....+++++..+.++++..||.|--++..
T Consensus 66 ~~yDviilPGG~~g~e~L~~~~~v~~lvK~q~~~gkLIaaICaap~~al~ 115 (247)
T KOG2764|consen 66 SKYDVIILPGGLPGAETLSECEKVVDLVKEQAESGKLIAAICAAPLTALA 115 (247)
T ss_pred ccccEEEecCCchhhhhhhhcHHHHHHHHHHHhcCCeEEEeecchHHHHh
Confidence 68999999999 77643 234667888888889999999999744443
No 144
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=92.59 E-value=0.63 Score=42.78 Aligned_cols=98 Identities=9% Similarity=0.044 Sum_probs=60.0
Q ss_pred ceEEEEEcccCCC-c-hhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCC
Q psy17159 45 TVTIGLVGKYTKF-E-DCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGK 122 (326)
Q Consensus 45 ~~~I~iigdyg~~-~-~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~ 122 (326)
..||++| -..+- . .....+.++++.+|+. .+.+..+...+ . ..++. ..+.|.++|+|+++||--.
T Consensus 28 ~~rI~~i-ptAS~~~~~~~~~~~~~~~~lG~~---~v~~l~i~~r~--~---a~~~~----~~~~l~~ad~I~~~GGnq~ 94 (250)
T TIGR02069 28 DAIIVII-TSASEEPREVGERYITIFSRLGVK---EVKILDVRERE--D---ASDEN----AIALLSNATGIFFTGGDQL 94 (250)
T ss_pred CceEEEE-eCCCCChHHHHHHHHHHHHHcCCc---eeEEEecCChH--H---ccCHH----HHHHHhhCCEEEEeCCCHH
Confidence 3689999 33220 0 1223455566666653 23444333110 0 01111 3457889999999999422
Q ss_pred C-----CCchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 123 R-----GLEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 123 ~-----~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
. ...++..+|+.+.+++.|+.|+-.|.-+|+..
T Consensus 95 ~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~i~~~~ 132 (250)
T TIGR02069 95 RITSLLGDTPLLDRLRKRVHEGIILGGTSAGAAVMSDT 132 (250)
T ss_pred HHHHHHcCCcHHHHHHHHHHcCCeEEEccHHHHhcccc
Confidence 1 22456778888888999999999999998743
No 145
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=92.41 E-value=0.56 Score=42.06 Aligned_cols=99 Identities=15% Similarity=0.123 Sum_probs=60.9
Q ss_pred CceEEEEEcccCCCc--hhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCC
Q psy17159 44 KTVTIGLVGKYTKFE--DCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFG 121 (326)
Q Consensus 44 ~~~~I~iigdyg~~~--~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~ 121 (326)
...+|++| .+.... +....+..++...|+. .+....+...+ ..+++. ..+.+.++|+|+++||--
T Consensus 28 ~~~~i~~i-ptA~~~~~~~~~~~~~~~~~lG~~---~v~~~~~~~~~-----~a~~~~----~~~~l~~ad~I~~~GG~~ 94 (217)
T cd03145 28 AGARIVVI-PAASEEPAEVGEEYRDVFERLGAR---EVEVLVIDSRE-----AANDPE----VVARLRDADGIFFTGGDQ 94 (217)
T ss_pred CCCcEEEE-eCCCcChhHHHHHHHHHHHHcCCc---eeEEeccCChH-----HcCCHH----HHHHHHhCCEEEEeCCcH
Confidence 35789999 554311 2233455566666542 22333222110 111222 345788999999999842
Q ss_pred CC-----CCchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 122 KR-----GLEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 122 ~~-----~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
.. ...++...|+.+.+++.|+.|+-.|.-+++..
T Consensus 95 ~~~~~~l~~t~l~~~l~~~~~~G~v~~G~SAGA~i~~~~ 133 (217)
T cd03145 95 LRITSALGGTPLLDALRKVYRGGVVIGGTSAGAAVMSDT 133 (217)
T ss_pred HHHHHHHcCChHHHHHHHHHHcCCEEEEccHHHHhhhhc
Confidence 21 12357788888888999999999999998854
No 146
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=92.32 E-value=0.75 Score=41.12 Aligned_cols=88 Identities=18% Similarity=0.124 Sum_probs=52.3
Q ss_pred EEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCCC-
Q psy17159 47 TIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRGL- 125 (326)
Q Consensus 47 ~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~~- 125 (326)
+|.|--+-|......+-.+++|+...... ..+.+++...|.. +| ..+.-..||+|||.+.+..
T Consensus 2 ~VlVYn~~GvSp~~lkhtv~sLr~~~~p~---y~v~~V~~~~Li~-----Ep--------W~~~T~lLV~pGGaDlpY~~ 65 (253)
T COG4285 2 NVLVYNGLGVSPYSLKHTVRSLRLFAPPY---YAVDRVDAQFLIK-----EP--------WEETTLLLVFPGGADLPYVQ 65 (253)
T ss_pred ceEEeCCCCCChHHHHHHHHHHHhhccch---heEEEeeeheeec-----Cc--------chhceEEEEecCCCCchHHH
Confidence 45555344443344445555665544321 3556666554432 22 2345567899999876532
Q ss_pred --chH-HHHHHHHHHcCCCEEEEehhHH
Q psy17159 126 --EGK-IAACKWARENNKPFLGICLGLQ 150 (326)
Q Consensus 126 --~~~-~~~i~~~~~~~~PvLGIClG~Q 150 (326)
.++ .+.|...++++--.||||.|--
T Consensus 66 ~l~g~g~a~i~~yvk~GG~fLGiCAG~Y 93 (253)
T COG4285 66 VLQGLGTARIKNYVKEGGNFLGICAGGY 93 (253)
T ss_pred HhcchhhhhHHHHHhcCCeEEEEecccc
Confidence 232 3557777888999999998854
No 147
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=90.34 E-value=0.82 Score=40.85 Aligned_cols=48 Identities=23% Similarity=0.227 Sum_probs=36.6
Q ss_pred hhhcCCCEEEECCCCCCC-----CCchHHHHHHHHHHcCCCEEEEehhHHHHH
Q psy17159 106 SDFCKVDGIIVPGGFGKR-----GLEGKIAACKWARENNKPFLGICLGLQAAV 153 (326)
Q Consensus 106 ~~l~~~dglilpGG~~~~-----~~~~~~~~i~~~~~~~~PvLGIClG~QlL~ 153 (326)
..|.+.|.|.+.||.--. ...++...|++.+++++|..|+-.|.-+-+
T Consensus 80 ~~l~~~d~IyVgGGNTF~LL~~lke~gld~iIr~~vk~G~~YiG~SAGA~ia~ 132 (224)
T COG3340 80 NKLMKADIIYVGGGNTFNLLQELKETGLDDIIRERVKAGTPYIGWSAGANIAG 132 (224)
T ss_pred HhhhhccEEEECCchHHHHHHHHHHhCcHHHHHHHHHcCCceEEeccCceeec
Confidence 356679999999984211 124678899999999999999998876554
No 148
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=88.94 E-value=1 Score=36.92 Aligned_cols=47 Identities=19% Similarity=0.344 Sum_probs=31.1
Q ss_pred hhcCCCEEEECCCCCCCCCchHHHHHHHHHH--cCCCEEEEehhHHHHHHH
Q psy17159 107 DFCKVDGIIVPGGFGKRGLEGKIAACKWARE--NNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 107 ~l~~~dglilpGG~~~~~~~~~~~~i~~~~~--~~~PvLGIClG~QlL~~~ 155 (326)
.+..+|.||+-||-..|......+-+++.++ .++|+.|+| +|-|..-
T Consensus 82 ~~n~aDvvVLlGGLaMP~~gv~~d~~kel~ee~~~kkliGvC--fm~mF~r 130 (154)
T COG4090 82 ELNSADVVVLLGGLAMPKIGVTPDDAKELLEELGNKKLIGVC--FMNMFER 130 (154)
T ss_pred ccccccEEEEEcccccCcCCCCHHHHHHHHHhcCCCceEEee--HHHHHHH
Confidence 5667999999999766644323333444443 468999999 5666653
No 149
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=87.65 E-value=3.7 Score=35.52 Aligned_cols=84 Identities=10% Similarity=0.068 Sum_probs=49.4
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCC--CCC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGF--GKR 123 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~--~~~ 123 (326)
|||.|+ |.+..||-..+.+.|...-.. +..+++.-+.... ...+.++|.|||.++- |..
T Consensus 1 MkilIv--Y~S~~G~T~~iA~~Ia~~l~~-g~~v~~~~~~~~~----------------~~~l~~yD~vIlGspi~~G~~ 61 (177)
T PRK11104 1 MKTLIL--YSSRDGQTRKIASYIASELKE-GIQCDVVNLHRIE----------------EPDLSDYDRVVIGASIRYGHF 61 (177)
T ss_pred CcEEEE--EECCCChHHHHHHHHHHHhCC-CCeEEEEEhhhcC----------------ccCHHHCCEEEEECccccCCc
Confidence 467777 667789988888888766443 4444444333110 1157789999887752 221
Q ss_pred CCchHHHHHHHHH--HcCCCEEEEehhH
Q psy17159 124 GLEGKIAACKWAR--ENNKPFLGICLGL 149 (326)
Q Consensus 124 ~~~~~~~~i~~~~--~~~~PvLGIClG~ 149 (326)
...+...++... -.++|+.-.|.|+
T Consensus 62 -~~~~~~fl~~~~~~l~~K~v~~F~v~l 88 (177)
T PRK11104 62 -HSALYKFVKKHATQLNQMPSAFFSVNL 88 (177)
T ss_pred -CHHHHHHHHHHHHHhCCCeEEEEEech
Confidence 122334443322 2478888888773
No 150
>PRK09271 flavodoxin; Provisional
Probab=87.64 E-value=4.2 Score=34.43 Aligned_cols=59 Identities=15% Similarity=0.103 Sum_probs=37.2
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPG 118 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpG 118 (326)
|||.|+ |++..||-..+.+.|.......+..+.+..++...+.+ ....+.++|+|||+.
T Consensus 1 mkv~Iv--Y~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~~~~~~~------------~~~~~~~~d~vilgt 59 (160)
T PRK09271 1 MRILLA--YASLSGNTREVAREIEERCEEAGHEVDWVETDVQTLAE------------YPLDPEDYDLYLLGT 59 (160)
T ss_pred CeEEEE--EEcCCchHHHHHHHHHHHHHhCCCeeEEEecccccccc------------cccCcccCCEEEEEC
Confidence 478877 77888998888888877655545455444443222111 112456789998876
No 151
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=86.89 E-value=3.1 Score=39.13 Aligned_cols=36 Identities=31% Similarity=0.449 Sum_probs=28.2
Q ss_pred cCCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEehhH
Q psy17159 109 CKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGL 149 (326)
Q Consensus 109 ~~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIClG~ 149 (326)
..+|.+|.-||-| -++.+.+.+...++|+|||-+|.
T Consensus 63 ~~~dlvi~lGGDG-----T~L~aa~~~~~~~~PilGIN~G~ 98 (292)
T PRK01911 63 GSADMVISIGGDG-----TFLRTATYVGNSNIPILGINTGR 98 (292)
T ss_pred cCCCEEEEECCcH-----HHHHHHHHhcCCCCCEEEEecCC
Confidence 3689999999854 34567776666789999999986
No 152
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=84.83 E-value=5.1 Score=37.99 Aligned_cols=36 Identities=33% Similarity=0.504 Sum_probs=28.2
Q ss_pred cCCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEehhH
Q psy17159 109 CKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGL 149 (326)
Q Consensus 109 ~~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIClG~ 149 (326)
+.+|.+|.-||-| -++.+.+.+...++|+|||-.|.
T Consensus 71 ~~~D~vi~lGGDG-----T~L~aar~~~~~~~PilGIN~G~ 106 (306)
T PRK03372 71 DGCELVLVLGGDG-----TILRAAELARAADVPVLGVNLGH 106 (306)
T ss_pred cCCCEEEEEcCCH-----HHHHHHHHhccCCCcEEEEecCC
Confidence 4689999999854 35567777667789999999884
No 153
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=82.91 E-value=8.1 Score=36.32 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=28.1
Q ss_pred cCCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEehhH
Q psy17159 109 CKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGL 149 (326)
Q Consensus 109 ~~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIClG~ 149 (326)
..+|.+|.-||-| .+..+++.+...++|+|||=.|.
T Consensus 62 ~~~d~vi~~GGDG-----t~l~~~~~~~~~~~pilGIn~G~ 97 (291)
T PRK02155 62 ARADLAVVLGGDG-----TMLGIGRQLAPYGVPLIGINHGR 97 (291)
T ss_pred cCCCEEEEECCcH-----HHHHHHHHhcCCCCCEEEEcCCC
Confidence 3689999999854 35567776666789999999886
No 154
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=82.84 E-value=2.1 Score=36.60 Aligned_cols=52 Identities=25% Similarity=0.390 Sum_probs=40.2
Q ss_pred cCCCEEEECCCCCCCC--------------CchHHHHHHHHHHcCCCEEEEehhHHHHHHHhCccc
Q psy17159 109 CKVDGIIVPGGFGKRG--------------LEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSV 160 (326)
Q Consensus 109 ~~~dglilpGG~~~~~--------------~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~ 160 (326)
..+|++|+|||||... ......+++...+.++|+==||..--|+...+|..+
T Consensus 84 e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki~g~~~ 149 (217)
T COG3155 84 EELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKIFGFPL 149 (217)
T ss_pred HhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHHcCCce
Confidence 4789999999998631 123556677777889999999999999988877543
No 155
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=82.38 E-value=0.94 Score=38.14 Aligned_cols=49 Identities=20% Similarity=0.171 Sum_probs=35.6
Q ss_pred hhhhhcCCCEEEECCCCCCC-----CCchHHHHHHHHHHcCCCEEEEehhHHHH
Q psy17159 104 TWSDFCKVDGIIVPGGFGKR-----GLEGKIAACKWARENNKPFLGICLGLQAA 152 (326)
Q Consensus 104 ~~~~l~~~dglilpGG~~~~-----~~~~~~~~i~~~~~~~~PvLGIClG~QlL 152 (326)
..+.|..+|+|+|+||--.. ...++...|+++.++++|+.|+-.|.-++
T Consensus 29 ~~~~i~~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~~~~~G~vi~G~SAGA~i~ 82 (154)
T PF03575_consen 29 ILEAIREADAIFLGGGDTFRLLRQLKETGLDEAIREAYRKGGVIIGTSAGAMIL 82 (154)
T ss_dssp HHHHHHHSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHHTTSEEEEETHHHHCT
T ss_pred HHHHHHhCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCEEEEEChHHhhc
Confidence 45677899999999984211 12357888999988999999999998654
No 156
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=81.99 E-value=9.4 Score=33.83 Aligned_cols=89 Identities=12% Similarity=0.049 Sum_probs=49.2
Q ss_pred EEEEEccc--CCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCC
Q psy17159 47 TIGLVGKY--TKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRG 124 (326)
Q Consensus 47 ~I~iigdy--g~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~ 124 (326)
||.|++.- +-..+.+......|..+..+ ...+.+.+.+. +..+ ..+.|+.+|.||+....+..-
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~-~~~~~v~~~~~-----------~~~~--~~~~L~~~Dvvv~~~~~~~~l 66 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEE-SEGFEVTVTED-----------PDDL--TPENLKGYDVVVFYNTGGDEL 66 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHH-TTCEEEEECCS-----------GGCT--SHHCHCT-SEEEEE-SSCCGS
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhcc-CCCEEEEEEeC-----------cccC--ChhHhcCCCEEEEECCCCCcC
Confidence 56666222 21223445566677776652 12334444432 1111 124689999999988654322
Q ss_pred CchHHHHHHHHHHcCCCEEEEehhH
Q psy17159 125 LEGKIAACKWARENNKPFLGICLGL 149 (326)
Q Consensus 125 ~~~~~~~i~~~~~~~~PvLGIClG~ 149 (326)
.....+.|+.++++|++++|+..+.
T Consensus 67 ~~~~~~al~~~v~~Ggglv~lH~~~ 91 (217)
T PF06283_consen 67 TDEQRAALRDYVENGGGLVGLHGAA 91 (217)
T ss_dssp -HHHHHHHHHHHHTT-EEEEEGGGG
T ss_pred CHHHHHHHHHHHHcCCCEEEEcccc
Confidence 3456678888889999999998444
No 157
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=81.00 E-value=8 Score=36.06 Aligned_cols=34 Identities=35% Similarity=0.501 Sum_probs=26.6
Q ss_pred CCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEehhH
Q psy17159 110 KVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGL 149 (326)
Q Consensus 110 ~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIClG~ 149 (326)
++|.+|.-||-| -+.++++ ....++|++||=.|.
T Consensus 57 ~~d~vi~iGGDG-----TlL~a~~-~~~~~~pi~gIn~G~ 90 (277)
T PRK03708 57 DVDFIIAIGGDG-----TILRIEH-KTKKDIPILGINMGT 90 (277)
T ss_pred CCCEEEEEeCcH-----HHHHHHH-hcCCCCeEEEEeCCC
Confidence 689999999854 2455666 556689999999987
No 158
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=80.16 E-value=13 Score=34.97 Aligned_cols=36 Identities=25% Similarity=0.304 Sum_probs=28.0
Q ss_pred cCCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEehhH
Q psy17159 109 CKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGL 149 (326)
Q Consensus 109 ~~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIClG~ 149 (326)
..+|.+|.-||-| -++.+.+.+...++|+|||-.|.
T Consensus 67 ~~~D~vi~lGGDG-----T~L~aa~~~~~~~~PilGIN~G~ 102 (296)
T PRK04539 67 QYCDLVAVLGGDG-----TFLSVAREIAPRAVPIIGINQGH 102 (296)
T ss_pred cCCCEEEEECCcH-----HHHHHHHHhcccCCCEEEEecCC
Confidence 3689999999854 35566666666789999999996
No 159
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=79.10 E-value=4.3 Score=38.80 Aligned_cols=49 Identities=20% Similarity=0.220 Sum_probs=38.1
Q ss_pred hhcCCCEEEECCCCCCCC--C-chHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 107 DFCKVDGIIVPGGFGKRG--L-EGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 107 ~l~~~dglilpGG~~~~~--~-~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
....+|-|++.||.+... . ..+..+++.+...+.++-|||.|.-+|+.+
T Consensus 73 ~~~~~~~v~v~~g~~~~~~~~~~~l~~~Lr~~~~~G~~l~gictGaf~LA~a 124 (328)
T COG4977 73 AAPPIDILPVCGGLGPERPVNAPALLAWLRRAARRGARLGGLCTGAFVLAEA 124 (328)
T ss_pred ccCcceEEEEecCCCcccccchHHHHHHHHHHHhcCCeEEEehHhHHHHHHh
Confidence 344578888877655432 2 347889999999999999999999999986
No 160
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=78.66 E-value=11 Score=35.39 Aligned_cols=36 Identities=39% Similarity=0.430 Sum_probs=28.3
Q ss_pred cCCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEehhH
Q psy17159 109 CKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGL 149 (326)
Q Consensus 109 ~~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIClG~ 149 (326)
..+|.+|.-||-| -++.+.+.+...++|+|||-.|.
T Consensus 63 ~~~Dlvi~iGGDG-----T~L~aa~~~~~~~~PilGIN~G~ 98 (287)
T PRK14077 63 KISDFLISLGGDG-----TLISLCRKAAEYDKFVLGIHAGH 98 (287)
T ss_pred cCCCEEEEECCCH-----HHHHHHHHhcCCCCcEEEEeCCC
Confidence 4689999888854 35667777666789999999986
No 161
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=76.12 E-value=20 Score=32.06 Aligned_cols=74 Identities=12% Similarity=0.059 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHhhhc---CCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCCCCchHHHHHHH
Q psy17159 60 CYASLTRALEHASYHS---NRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKRGLEGKIAACKW 134 (326)
Q Consensus 60 ~~~Si~~aL~~~g~~~---~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~~~~~~~~~i~~ 134 (326)
-+.++.+.++++..+. +..+++...+... ++....+..+.+ ..+||||+.+... ......+..
T Consensus 13 ~~~~~~~~i~~~~~~~~~~g~~~~l~i~~~~~--------~~~~~~~~~~~~~~~~vdgiIi~~~~~----~~~~~~l~~ 80 (272)
T cd06300 13 WRAQMLDEFKAQAKELKKAGLISEFIVTSADG--------DVAQQIADIRNLIAQGVDAIIINPASP----TALNPVIEE 80 (272)
T ss_pred HHHHHHHHHHHHHHhhhccCCeeEEEEecCCC--------CHHHHHHHHHHHHHcCCCEEEEeCCCh----hhhHHHHHH
Confidence 3556888888887766 6544555544321 111111112222 4899999976421 112234566
Q ss_pred HHHcCCCEEEE
Q psy17159 135 ARENNKPFLGI 145 (326)
Q Consensus 135 ~~~~~~PvLGI 145 (326)
+.+.++|+..+
T Consensus 81 ~~~~~iPvv~~ 91 (272)
T cd06300 81 ACEAGIPVVSF 91 (272)
T ss_pred HHHCCCeEEEE
Confidence 66778998875
No 162
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=76.11 E-value=13 Score=35.01 Aligned_cols=36 Identities=28% Similarity=0.323 Sum_probs=27.8
Q ss_pred cCCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEehhH
Q psy17159 109 CKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGL 149 (326)
Q Consensus 109 ~~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIClG~ 149 (326)
+.+|.+|.-||-| -+..+++.+...++|+|||-.|.
T Consensus 62 ~~~d~vi~lGGDG-----T~L~aa~~~~~~~~Pilgin~G~ 97 (292)
T PRK03378 62 QQADLAIVVGGDG-----NMLGAARVLARYDIKVIGINRGN 97 (292)
T ss_pred CCCCEEEEECCcH-----HHHHHHHHhcCCCCeEEEEECCC
Confidence 4689999999854 24566666656689999999988
No 163
>PRK06756 flavodoxin; Provisional
Probab=74.66 E-value=12 Score=30.92 Aligned_cols=56 Identities=9% Similarity=0.146 Sum_probs=36.2
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPG 118 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpG 118 (326)
+||.|+ |.+..||-..+.++|.......+..+++..+... + ....+.++|+|||.-
T Consensus 2 mkv~Ii--Y~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~----------~-----~~~~~~~~d~vi~gs 57 (148)
T PRK06756 2 SKLVMI--FASMSGNTEEMADHIAGVIRETENEIEVIDIMDS----------P-----EASILEQYDGIILGA 57 (148)
T ss_pred ceEEEE--EECCCchHHHHHHHHHHHHhhcCCeEEEeehhcc----------C-----CHHHHhcCCeEEEEe
Confidence 578888 6677899999998887765444444444333210 0 013577899998865
No 164
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=74.40 E-value=16 Score=34.61 Aligned_cols=36 Identities=28% Similarity=0.307 Sum_probs=27.9
Q ss_pred cCCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEehhH
Q psy17159 109 CKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGL 149 (326)
Q Consensus 109 ~~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIClG~ 149 (326)
..+|.+|.-||-| -++.+++.+...++|+|||-.|.
T Consensus 67 ~~~Dlvi~iGGDG-----TlL~aar~~~~~~iPilGIN~G~ 102 (305)
T PRK02649 67 SSMKFAIVLGGDG-----TVLSAARQLAPCGIPLLTINTGH 102 (305)
T ss_pred cCcCEEEEEeCcH-----HHHHHHHHhcCCCCcEEEEeCCC
Confidence 3689999999855 35567776666789999999883
No 165
>PRK05568 flavodoxin; Provisional
Probab=72.23 E-value=36 Score=27.65 Aligned_cols=55 Identities=9% Similarity=0.110 Sum_probs=35.6
Q ss_pred EEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCC
Q psy17159 47 TIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGG 119 (326)
Q Consensus 47 ~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG 119 (326)
+|.|+ |.+..||-..+.++|.......+.++++..+.... ...+.++|+|||.-.
T Consensus 3 ~~~Iv--Y~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~~~----------------~~~~~~~d~iilgsp 57 (142)
T PRK05568 3 KINII--YWSGTGNTEAMANLIAEGAKENGAEVKLLNVSEAS----------------VDDVKGADVVALGSP 57 (142)
T ss_pred eEEEE--EECCCchHHHHHHHHHHHHHHCCCeEEEEECCCCC----------------HHHHHhCCEEEEECC
Confidence 56666 66778999999988887654444455444333110 125789999988653
No 166
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=70.82 E-value=28 Score=32.41 Aligned_cols=31 Identities=35% Similarity=0.586 Sum_probs=22.2
Q ss_pred CCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEehh
Q psy17159 110 KVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLG 148 (326)
Q Consensus 110 ~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIClG 148 (326)
++|.+|.-||-|+ ++.+. .....|+|||-.|
T Consensus 52 ~~D~vi~lGGDGT-----~L~a~---~~~~~PilGIN~G 82 (271)
T PRK01185 52 NADVIITIGGDGT-----ILRTL---QRAKGPILGINMG 82 (271)
T ss_pred CCCEEEEEcCcHH-----HHHHH---HHcCCCEEEEECC
Confidence 6899999998552 23333 3345799999998
No 167
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=70.69 E-value=18 Score=37.28 Aligned_cols=37 Identities=27% Similarity=0.402 Sum_probs=28.4
Q ss_pred hcCCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEehhH
Q psy17159 108 FCKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGL 149 (326)
Q Consensus 108 l~~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIClG~ 149 (326)
+..+|.+|.-||-| .++.+.+.+...++|+|||-+|.
T Consensus 346 ~~~~dlvi~lGGDG-----T~L~aa~~~~~~~~PilGin~G~ 382 (569)
T PRK14076 346 IEEISHIISIGGDG-----TVLRASKLVNGEEIPIICINMGT 382 (569)
T ss_pred ccCCCEEEEECCcH-----HHHHHHHHhcCCCCCEEEEcCCC
Confidence 34689999999854 35566676666789999999885
No 168
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=70.33 E-value=25 Score=33.12 Aligned_cols=36 Identities=36% Similarity=0.444 Sum_probs=26.9
Q ss_pred cCCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEehhH
Q psy17159 109 CKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGL 149 (326)
Q Consensus 109 ~~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIClG~ 149 (326)
+.+|.+|.-||-| .+..+++.+...++|+|||-.|.
T Consensus 61 ~~~d~vi~~GGDG-----t~l~~~~~~~~~~~Pvlgin~G~ 96 (295)
T PRK01231 61 EVCDLVIVVGGDG-----SLLGAARALARHNVPVLGINRGR 96 (295)
T ss_pred cCCCEEEEEeCcH-----HHHHHHHHhcCCCCCEEEEeCCc
Confidence 3589999998854 24456666656789999999886
No 169
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=69.85 E-value=14 Score=31.44 Aligned_cols=33 Identities=21% Similarity=0.187 Sum_probs=22.9
Q ss_pred cCCCEEEECCCCCCCCCchHHHHHHHHHHcCCC
Q psy17159 109 CKVDGIIVPGGFGKRGLEGKIAACKWARENNKP 141 (326)
Q Consensus 109 ~~~dglilpGG~~~~~~~~~~~~i~~~~~~~~P 141 (326)
..+|.||++||-|.....-..++++...+...|
T Consensus 62 ~~~DlVIttGGtg~g~~D~t~eal~~l~~~~l~ 94 (163)
T TIGR02667 62 PDVQVILITGGTGFTGRDVTPEALEPLFDKTVE 94 (163)
T ss_pred CCCCEEEECCCcCCCCCCCcHHHHHHHHCCcCC
Confidence 369999999987665544555677766655555
No 170
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=69.39 E-value=19 Score=33.42 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=27.0
Q ss_pred cCCCEEEECCCCCCCCCchHHHHHHHHHH--cCCCEEEEehhH
Q psy17159 109 CKVDGIIVPGGFGKRGLEGKIAACKWARE--NNKPFLGICLGL 149 (326)
Q Consensus 109 ~~~dglilpGG~~~~~~~~~~~~i~~~~~--~~~PvLGIClG~ 149 (326)
.++|.+|.-||-| .++.+++.+.. .++|++||-.|.
T Consensus 34 ~~~Dlvi~iGGDG-----T~L~a~~~~~~~~~~iPilGIN~G~ 71 (265)
T PRK04885 34 KNPDIVISVGGDG-----TLLSAFHRYENQLDKVRFVGVHTGH 71 (265)
T ss_pred cCCCEEEEECCcH-----HHHHHHHHhcccCCCCeEEEEeCCC
Confidence 3579999999854 35566666655 589999999885
No 171
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=69.32 E-value=30 Score=28.30 Aligned_cols=32 Identities=9% Similarity=0.129 Sum_probs=22.8
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCce
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHL 79 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v 79 (326)
|||.|+ |++..||-..+.+.|.......+.++
T Consensus 1 M~i~Ii--Y~S~tGnTe~iA~~ia~~l~~~g~~v 32 (140)
T TIGR01754 1 MRILLA--YLSLSGNTEEVAFMIQDYLQKDGHEV 32 (140)
T ss_pred CeEEEE--EECCCChHHHHHHHHHHHHhhCCeeE
Confidence 477777 77888999999998876654434333
No 172
>PRK06703 flavodoxin; Provisional
Probab=67.88 E-value=17 Score=30.17 Aligned_cols=55 Identities=15% Similarity=0.231 Sum_probs=35.2
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPG 118 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpG 118 (326)
++|.|+ |++..||-..+.++|.......+..+++..+... + ...+.++|.|||.-
T Consensus 2 mkv~Ii--Y~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~---------~-------~~~l~~~d~viigs 56 (151)
T PRK06703 2 AKILIA--YASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGM---------D-------AEELLAYDGIILGS 56 (151)
T ss_pred CeEEEE--EECCCchHHHHHHHHHHHHHhcCCceEEEehhhC---------C-------HHHHhcCCcEEEEE
Confidence 467777 6677899888998887755444445554433311 0 12577899998843
No 173
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=67.83 E-value=35 Score=29.90 Aligned_cols=38 Identities=13% Similarity=0.224 Sum_probs=26.5
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhc-CCceEEEEee
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHS-NRHLQLKYFD 85 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~-~~~v~~~~i~ 85 (326)
+||+|| |.+-.||-..+.+++.....+. +.++.+..++
T Consensus 1 ~kilIi--Y~S~~G~T~~lA~~ia~g~~~~~g~ev~~~~v~ 39 (197)
T TIGR01755 1 VKVLVL--YYSMYGHIETMARAVAEGAREVDGAEVVVKRVP 39 (197)
T ss_pred CeEEEE--EeCCCCHHHHHHHHHHHHHHhcCCCEEEEEecc
Confidence 378888 5566788888888888754443 5667766664
No 174
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=66.20 E-value=9.7 Score=32.86 Aligned_cols=31 Identities=23% Similarity=0.263 Sum_probs=25.1
Q ss_pred CCEEEECCCCCCCCCchHHHHHHHHHHcCCC
Q psy17159 111 VDGIIVPGGFGKRGLEGKIAACKWARENNKP 141 (326)
Q Consensus 111 ~dglilpGG~~~~~~~~~~~~i~~~~~~~~P 141 (326)
+|.|+..||-|.....-..++++..++..+|
T Consensus 68 ~DvvlttGGTG~t~RDvTpEA~~~~~dKeip 98 (169)
T COG0521 68 VDVVLTTGGTGITPRDVTPEATRPLFDKEIP 98 (169)
T ss_pred CCEEEEcCCccCCCCcCCHHHHHHHHhccCC
Confidence 8999999998876555567788888888888
No 175
>PRK05569 flavodoxin; Provisional
Probab=65.89 E-value=17 Score=29.58 Aligned_cols=54 Identities=9% Similarity=0.192 Sum_probs=35.8
Q ss_pred EEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECC
Q psy17159 47 TIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPG 118 (326)
Q Consensus 47 ~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpG 118 (326)
+|.|+ |++..||-..+.+++.....+.+.++++..+.... ...+.++|+|||.-
T Consensus 3 ki~ii--Y~S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~~----------------~~~~~~~d~iilgs 56 (141)
T PRK05569 3 KVSII--YWSCGGNVEVLANTIADGAKEAGAEVTIKHVADAK----------------VEDVLEADAVAFGS 56 (141)
T ss_pred eEEEE--EECCCCHHHHHHHHHHHHHHhCCCeEEEEECCcCC----------------HHHHhhCCEEEEEC
Confidence 67777 66678998889988887654455555554443211 12677999998865
No 176
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=65.63 E-value=11 Score=28.43 Aligned_cols=43 Identities=23% Similarity=0.358 Sum_probs=31.0
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGG 119 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG 119 (326)
.||||= .++..+..+|+..|+++ +-+. . ..++..+|++|++|.
T Consensus 2 kkIAVE-------~~Ls~v~~~L~~~GyeV------v~l~-----~-------------~~~~~~~daiVvtG~ 44 (80)
T PF03698_consen 2 KKIAVE-------EGLSNVKEALREKGYEV------VDLE-----N-------------EQDLQNVDAIVVTGQ 44 (80)
T ss_pred CeEEec-------CCchHHHHHHHHCCCEE------EecC-----C-------------ccccCCcCEEEEECC
Confidence 478876 57889999999999853 1121 1 125789999999994
No 177
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=64.96 E-value=48 Score=28.97 Aligned_cols=71 Identities=14% Similarity=0.157 Sum_probs=39.1
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhh-cCCceEEEEeecccccCC----C-CCCCchhhcchhhhhcCCCEEEECCC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYH-SNRHLQLKYFDSELLSMD----P-KTGNMAEYHKTWSDFCKVDGIIVPGG 119 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~-~~~~v~~~~i~~~~l~~~----~-~~~~~~~~~~~~~~l~~~dglilpGG 119 (326)
+||+|| |++-.||-..+.+++.....+ .+.+++++.+......+. . ....+.... ..+++.++|+|||.-.
T Consensus 2 ~kilIv--y~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~aD~ii~gsP 78 (200)
T PRK03767 2 AKVLVL--YYSMYGHIETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQAAPVA-TPDELADYDAIIFGTP 78 (200)
T ss_pred CeEEEE--EcCCCCHHHHHHHHHHHHHhhcCCcEEEEEeccccCCHHHHHhcCCCcccCCCcc-CHHHHHhCCEEEEEec
Confidence 478888 445568888888887775544 566777776642110000 0 000000000 1457889999988643
No 178
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=64.45 E-value=7.2 Score=35.77 Aligned_cols=38 Identities=24% Similarity=0.292 Sum_probs=29.9
Q ss_pred hhcCCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEehhH
Q psy17159 107 DFCKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGL 149 (326)
Q Consensus 107 ~l~~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIClG~ 149 (326)
.+.++|.+|.-||-| .++.+++.+...++|+|||-.|.
T Consensus 22 ~~~~~Dlvi~iGGDG-----TlL~a~~~~~~~~~PvlGIN~G~ 59 (246)
T PRK04761 22 PIEEADVIVALGGDG-----FMLQTLHRYMNSGKPVYGMNRGS 59 (246)
T ss_pred CcccCCEEEEECCCH-----HHHHHHHHhcCCCCeEEEEeCCC
Confidence 356789999999854 35677777777789999999885
No 179
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=63.89 E-value=35 Score=31.77 Aligned_cols=35 Identities=40% Similarity=0.523 Sum_probs=27.1
Q ss_pred cCCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEehh
Q psy17159 109 CKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLG 148 (326)
Q Consensus 109 ~~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIClG 148 (326)
+.+|.+++-||-| .+..+.+.+...++|++||=+|
T Consensus 54 ~~~d~ivvlGGDG-----tlL~~~~~~~~~~~pilgin~G 88 (281)
T COG0061 54 EKADLIVVLGGDG-----TLLRAARLLARLDIPVLGINLG 88 (281)
T ss_pred cCceEEEEeCCcH-----HHHHHHHHhccCCCCEEEEeCC
Confidence 5678888888744 3556777777778999999999
No 180
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=63.83 E-value=5.5 Score=32.90 Aligned_cols=69 Identities=12% Similarity=0.107 Sum_probs=35.7
Q ss_pred eEEEEEcccCCCc--hhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCC-------CCCchhhcchhhhhcCCCEEEE
Q psy17159 46 VTIGLVGKYTKFE--DCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPK-------TGNMAEYHKTWSDFCKVDGIIV 116 (326)
Q Consensus 46 ~~I~iigdyg~~~--~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~-------~~~~~~~~~~~~~l~~~dglil 116 (326)
|||++| +|+.. ++-..+.+.+.......+. ++.+++..++..... ...++..+++.+.+..+|+||+
T Consensus 1 Mkilii--~gS~r~~~~t~~l~~~~~~~l~~~g~--e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~ 76 (152)
T PF03358_consen 1 MKILII--NGSPRKNSNTRKLAEAVAEQLEEAGA--EVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIF 76 (152)
T ss_dssp -EEEEE--ESSSSTTSHHHHHHHHHHHHHHHTTE--EEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEE
T ss_pred CEEEEE--ECcCCCCCHHHHHHHHHHHHHHHcCC--EEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEE
Confidence 578887 33332 5666677666665544443 444444333200000 0112333445667889999988
Q ss_pred CC
Q psy17159 117 PG 118 (326)
Q Consensus 117 pG 118 (326)
.-
T Consensus 77 ~s 78 (152)
T PF03358_consen 77 AS 78 (152)
T ss_dssp EE
T ss_pred ee
Confidence 64
No 181
>KOG3974|consensus
Probab=63.71 E-value=13 Score=34.37 Aligned_cols=46 Identities=15% Similarity=0.267 Sum_probs=31.7
Q ss_pred hhhhhcCCCEEEECCCCCCCC--CchHHHHHHHHHHcCCCEEEEehhH
Q psy17159 104 TWSDFCKVDGIIVPGGFGKRG--LEGKIAACKWARENNKPFLGICLGL 149 (326)
Q Consensus 104 ~~~~l~~~dglilpGG~~~~~--~~~~~~~i~~~~~~~~PvLGIClG~ 149 (326)
+.+.|...+++||.+|-|-.. .+.+.+.+++++++++|+.==--|+
T Consensus 95 i~k~L~RlhavVIGPGLGRdp~~~k~i~~iley~~~~dvP~VIDaDGL 142 (306)
T KOG3974|consen 95 IEKLLQRLHAVVIGPGLGRDPAILKEIAKILEYLRGKDVPLVIDADGL 142 (306)
T ss_pred HHHHHhheeEEEECCCCCCCHHHHHHHHHHHHHHhcCCCcEEEcCCce
Confidence 444578999999998877532 2345567788888999986433333
No 182
>PLN02929 NADH kinase
Probab=63.44 E-value=25 Score=33.25 Aligned_cols=37 Identities=24% Similarity=0.416 Sum_probs=28.4
Q ss_pred hhcCCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEehhH
Q psy17159 107 DFCKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGL 149 (326)
Q Consensus 107 ~l~~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIClG~ 149 (326)
.+.++|.+|.-||-| .++.+.+.+ ..++|||||-.|.
T Consensus 61 ~~~~~Dlvi~lGGDG-----T~L~aa~~~-~~~iPvlGIN~Gp 97 (301)
T PLN02929 61 PIRDVDLVVAVGGDG-----TLLQASHFL-DDSIPVLGVNSDP 97 (301)
T ss_pred ccCCCCEEEEECCcH-----HHHHHHHHc-CCCCcEEEEECCC
Confidence 456889999999854 345666666 7789999999983
No 183
>PLN02727 NAD kinase
Probab=63.17 E-value=31 Score=37.54 Aligned_cols=36 Identities=28% Similarity=0.309 Sum_probs=28.2
Q ss_pred cCCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEehhH
Q psy17159 109 CKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGL 149 (326)
Q Consensus 109 ~~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIClG~ 149 (326)
..+|.+|.-||-| -++.+.+.+...++|||||=+|.
T Consensus 742 ~~~DLVIvLGGDG-----TlLrAar~~~~~~iPILGINlGr 777 (986)
T PLN02727 742 ERVDFVACLGGDG-----VILHASNLFRGAVPPVVSFNLGS 777 (986)
T ss_pred cCCCEEEEECCcH-----HHHHHHHHhcCCCCCEEEEeCCC
Confidence 4689999999854 35567777666789999999985
No 184
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=63.00 E-value=42 Score=31.70 Aligned_cols=34 Identities=29% Similarity=0.395 Sum_probs=25.8
Q ss_pred cCCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEeh
Q psy17159 109 CKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICL 147 (326)
Q Consensus 109 ~~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGICl 147 (326)
..+|.+|.-||-| .+..+++.....++|++||=.
T Consensus 56 ~~~d~vi~~GGDG-----T~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 56 ELIDLAIVLGGDG-----TVLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred cCcCEEEEECCcH-----HHHHHHHHhccCCCCEEEEec
Confidence 3689999999854 345666666567999999987
No 185
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=62.83 E-value=39 Score=29.94 Aligned_cols=77 Identities=13% Similarity=0.124 Sum_probs=46.1
Q ss_pred ceEEEEEcccCCCchhHHHHHHHHHHHhhhcCC-ceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCC
Q psy17159 45 TVTIGLVGKYTKFEDCYASLTRALEHASYHSNR-HLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKR 123 (326)
Q Consensus 45 ~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~-~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~ 123 (326)
..+|.+| ++.....++++..+..++. -+.-.|+.- .|+... .+....+|.||+.+-
T Consensus 61 ~~~ILfV-------gtk~~~~~~V~~~A~~~g~~~v~~RWlgG-tLTN~~-----------~~~~~~Pdlliv~dp---- 117 (196)
T TIGR01012 61 PEDILVV-------SARIYGQKPVLKFAKVTGARAIAGRFTPG-TFTNPM-----------QKAFREPEVVVVTDP---- 117 (196)
T ss_pred CCeEEEE-------ecCHHHHHHHHHHHHHhCCceECCeeCCC-CCCCcc-----------ccccCCCCEEEEECC----
Confidence 3478888 3333444555555544443 234457763 222211 013467888888631
Q ss_pred CCchHHHHHHHHHHcCCCEEEEe
Q psy17159 124 GLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 124 ~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
.....++++|...++|+.|||
T Consensus 118 --~~~~~Av~EA~~l~IP~Iai~ 138 (196)
T TIGR01012 118 --RADHQALKEASEVGIPIVALC 138 (196)
T ss_pred --ccccHHHHHHHHcCCCEEEEe
Confidence 233568899999999999999
No 186
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=62.76 E-value=41 Score=25.75 Aligned_cols=89 Identities=18% Similarity=0.091 Sum_probs=47.1
Q ss_pred EEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCCCc
Q psy17159 47 TIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRGLE 126 (326)
Q Consensus 47 ~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~~~ 126 (326)
+|+|||.-. +....+.+.++..|.. ..+..... ...... ..++..+..+|.||+.=+.-. ..
T Consensus 1 ~vliVGG~~---~~~~~~~~~~~~~G~~------~~~hg~~~----~~~~~~---~~l~~~i~~aD~VIv~t~~vs--H~ 62 (97)
T PF10087_consen 1 SVLIVGGRE---DRERRYKRILEKYGGK------LIHHGRDG----GDEKKA---SRLPSKIKKADLVIVFTDYVS--HN 62 (97)
T ss_pred CEEEEcCCc---ccHHHHHHHHHHcCCE------EEEEecCC----CCccch---hHHHHhcCCCCEEEEEeCCcC--hH
Confidence 478885532 4566677777777763 23441100 000000 013457789999998865432 11
Q ss_pred hHHHHHHHHHHcCCCEEEEe-hhHHHHH
Q psy17159 127 GKIAACKWARENNKPFLGIC-LGLQAAV 153 (326)
Q Consensus 127 ~~~~~i~~~~~~~~PvLGIC-lG~QlL~ 153 (326)
....+-+.+.+.++|+.=.= .|..-|.
T Consensus 63 ~~~~vk~~akk~~ip~~~~~~~~~~~l~ 90 (97)
T PF10087_consen 63 AMWKVKKAAKKYGIPIIYSRSRGVSSLE 90 (97)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCHHHHH
Confidence 22333455667789987543 3444443
No 187
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=60.89 E-value=31 Score=31.70 Aligned_cols=33 Identities=36% Similarity=0.482 Sum_probs=24.6
Q ss_pred cCCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEehhH
Q psy17159 109 CKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGL 149 (326)
Q Consensus 109 ~~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIClG~ 149 (326)
.++|.+|.-||-| .++.+++.+ ++|+|||-.|.
T Consensus 40 ~~~d~vi~iGGDG-----T~L~a~~~~---~~Pilgin~G~ 72 (256)
T PRK14075 40 VTADLIIVVGGDG-----TVLKAAKKV---GTPLVGFKAGR 72 (256)
T ss_pred CCCCEEEEECCcH-----HHHHHHHHc---CCCEEEEeCCC
Confidence 4789999999854 234455544 89999999885
No 188
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=60.78 E-value=71 Score=25.48 Aligned_cols=49 Identities=8% Similarity=0.173 Sum_probs=32.3
Q ss_pred cCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECC
Q psy17159 54 YTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPG 118 (326)
Q Consensus 54 yg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpG 118 (326)
|++..||-..+.++|.......+.++++..+... + ...+..+|.||+..
T Consensus 5 y~S~tGnT~~~A~~i~~~~~~~g~~v~~~~~~~~---------~-------~~~l~~~d~iilgs 53 (140)
T TIGR01753 5 YASMTGNTEEMANIIAEGLKEAGAEVDLLEVADA---------D-------AEDLLSYDAVLLGC 53 (140)
T ss_pred EECCCcHHHHHHHHHHHHHHhcCCeEEEEEcccC---------C-------HHHHhcCCEEEEEc
Confidence 6777899999999888766555555554443311 0 12567799998865
No 189
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=60.58 E-value=24 Score=30.26 Aligned_cols=48 Identities=19% Similarity=0.152 Sum_probs=33.0
Q ss_pred hhcCCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEehhHHHHHHHh
Q psy17159 107 DFCKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGLQAAVIEY 156 (326)
Q Consensus 107 ~l~~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~ 156 (326)
.++.+|-||.+||-|.....-..+++..+. ++|+.+.=--++.|-..+
T Consensus 55 ~~~~~dlVIttGG~G~t~~D~t~ea~~~~~--~~~l~~~~e~~~~i~~~~ 102 (170)
T cd00885 55 ASERADLVITTGGLGPTHDDLTREAVAKAF--GRPLVLDEEALERIEARF 102 (170)
T ss_pred HHhCCCEEEECCCCCCCCCChHHHHHHHHh--CCCcccCHHHHHHHHHHH
Confidence 346799999999877655555667776664 567776666666665544
No 190
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=60.36 E-value=59 Score=29.00 Aligned_cols=74 Identities=14% Similarity=0.186 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCCCCchHHHHHHHHHH
Q psy17159 60 CYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKRGLEGKIAACKWARE 137 (326)
Q Consensus 60 ~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~~~~~~~~~i~~~~~ 137 (326)
.+.++...++.+..+.+..+.+...+.. .++..-.+..+.+ ..+||||+.+.... .....++.+.+
T Consensus 13 ~~~~~~~gi~~~~~~~g~~~~~~~~~~~--------~~~~~~~~~i~~l~~~~vdgiIi~~~~~~----~~~~~~~~~~~ 80 (275)
T cd06320 13 FWRSLKEGYENEAKKLGVSVDIQAAPSE--------GDQQGQLSIAENMINKGYKGLLFSPISDV----NLVPAVERAKK 80 (275)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEccCCC--------CCHHHHHHHHHHHHHhCCCEEEECCCChH----HhHHHHHHHHH
Confidence 4566777787777666555444333211 0111000111122 47999998754221 12234566667
Q ss_pred cCCCEEEE
Q psy17159 138 NNKPFLGI 145 (326)
Q Consensus 138 ~~~PvLGI 145 (326)
.++|+..+
T Consensus 81 ~~iPvV~~ 88 (275)
T cd06320 81 KGIPVVNV 88 (275)
T ss_pred CCCeEEEE
Confidence 79998766
No 191
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=60.23 E-value=32 Score=30.31 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=24.4
Q ss_pred CCCEEEECCCCCCCCCchHHHHHHHHHHcCCC
Q psy17159 110 KVDGIIVPGGFGKRGLEGKIAACKWARENNKP 141 (326)
Q Consensus 110 ~~dglilpGG~~~~~~~~~~~~i~~~~~~~~P 141 (326)
.+|.||.+||-|.....-..++++.+.+..+|
T Consensus 66 ~~DlIITTGGtg~g~rDvTpeAv~~l~~keip 97 (193)
T PRK09417 66 GCDLVLTTGGTGPARRDVTPEATLAVADKEMP 97 (193)
T ss_pred CCCEEEECCCCCCCCCCcHHHHHHHHhCCcCC
Confidence 69999999987765555667788887766666
No 192
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=59.90 E-value=33 Score=30.17 Aligned_cols=91 Identities=13% Similarity=0.137 Sum_probs=49.4
Q ss_pred EEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCC----CCC------CchhhcchhhhhcCCCEEEEC
Q psy17159 48 IGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDP----KTG------NMAEYHKTWSDFCKVDGIIVP 117 (326)
Q Consensus 48 I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~----~~~------~~~~~~~~~~~l~~~dglilp 117 (326)
++|.|-+-+ .||-..+++++.....+.+.++.++.+..-.+.... ... +-+.++++.+.+.++|+||+.
T Consensus 4 ~~I~gs~r~-~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~g 82 (207)
T COG0655 4 LGINGSPRS-NGNTAKLAEAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIFG 82 (207)
T ss_pred eEEEecCCC-CCcHHHHHHHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEEe
Confidence 344444544 577777777777666666778888888754222211 000 001233455567889999986
Q ss_pred CCCCCCCCchHHHHHHHHHHc-CCCE
Q psy17159 118 GGFGKRGLEGKIAACKWAREN-NKPF 142 (326)
Q Consensus 118 GG~~~~~~~~~~~~i~~~~~~-~~Pv 142 (326)
.- - ..-+.-..++.++++ ..|.
T Consensus 83 sP-v--y~g~vsa~~K~fiDR~~~~~ 105 (207)
T COG0655 83 SP-V--YFGNVSAQMKAFIDRSTGPL 105 (207)
T ss_pred CC-e--ecCCchHHHHHHHhhcchhh
Confidence 42 1 111233455666665 4443
No 193
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=59.36 E-value=10 Score=35.02 Aligned_cols=36 Identities=22% Similarity=0.145 Sum_probs=28.1
Q ss_pred cCCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEehhH
Q psy17159 109 CKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGL 149 (326)
Q Consensus 109 ~~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIClG~ 149 (326)
+++|.+|.-||-| -++.+++.+...++|+|||-.|.
T Consensus 32 ~~~D~vi~iGGDG-----T~L~a~~~~~~~~iPilGIN~G~ 67 (259)
T PRK00561 32 DGADYLFVLGGDG-----FFVSTAANYNCAGCKVVGINTGH 67 (259)
T ss_pred CCCCEEEEECCcH-----HHHHHHHHhcCCCCcEEEEecCC
Confidence 4689999999854 35567777667789999999884
No 194
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=58.83 E-value=51 Score=33.47 Aligned_cols=36 Identities=28% Similarity=0.345 Sum_probs=27.3
Q ss_pred cCCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEehhH
Q psy17159 109 CKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGL 149 (326)
Q Consensus 109 ~~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIClG~ 149 (326)
..+|.||.-||-| -++.+.+.+....+|||||=+|.
T Consensus 261 ~~~DlVIsiGGDG-----TlL~Aar~~~~~~iPILGIN~G~ 296 (508)
T PLN02935 261 TKVDLVITLGGDG-----TVLWAASMFKGPVPPVVPFSMGS 296 (508)
T ss_pred cCCCEEEEECCcH-----HHHHHHHHhccCCCcEEEEeCCC
Confidence 4689999999854 24566666666689999999773
No 195
>COG4242 CphB Cyanophycinase and related exopeptidases [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=58.62 E-value=17 Score=33.45 Aligned_cols=50 Identities=18% Similarity=0.092 Sum_probs=40.0
Q ss_pred hhhhcCCCEEEECCCCCCC-----CCchHHHHHHHHHHcCCCEEEEehhHHHHHH
Q psy17159 105 WSDFCKVDGIIVPGGFGKR-----GLEGKIAACKWARENNKPFLGICLGLQAAVI 154 (326)
Q Consensus 105 ~~~l~~~dglilpGG~~~~-----~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~ 154 (326)
...+.+++||++.||--.+ ....+.+.|+.....+.-+-|+-.|.-+|..
T Consensus 101 ~~~v~~a~gIfftGGDQ~ri~~~lkdTpl~~~ir~r~r~G~avgGTSAGAavM~~ 155 (293)
T COG4242 101 VAKVENATGIFFTGGDQLRIIGSLKDTPLMAAIRQRVRRGIAVGGTSAGAAVMSD 155 (293)
T ss_pred HHHHHhCceEEEecCcceeeeeeccCCHHHHHHHHHHhcCceecccccchhhcCC
Confidence 4467899999999995332 2345778888888889999999999999983
No 196
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=57.70 E-value=52 Score=32.23 Aligned_cols=54 Identities=28% Similarity=0.194 Sum_probs=28.9
Q ss_pred hhhhhcCCCEEEECCCCCCCCC------chHHHHHHHHHHcCCCEE--EEehh-------HHHHHHHhC
Q psy17159 104 TWSDFCKVDGIIVPGGFGKRGL------EGKIAACKWARENNKPFL--GICLG-------LQAAVIEYG 157 (326)
Q Consensus 104 ~~~~l~~~dglilpGG~~~~~~------~~~~~~i~~~~~~~~PvL--GIClG-------~QlL~~~~g 157 (326)
....+..+|.+|++||.=..+. -.....+..+.-.++|++ |+-.| -|++...++
T Consensus 83 il~~l~~~d~~I~~Gg~l~~d~~~~~~~~~~~~~~~la~l~~kp~~~~g~svGP~~~~~s~~~~~~~~~ 151 (385)
T COG2327 83 ILSALGKADLIIIGGGGLLQDVTSSRSIIYYGGSILLARLAGKPTFFFGQSVGPLKHPLSRQLLNYVLG 151 (385)
T ss_pred HHHHhhhCCEEEEcCcccccCccccceehhhHHHHHHHHHcCCCEEEEeccCCCccCHHHHHHHHHHhc
Confidence 3445678999999998421111 112222444444577754 55444 256665554
No 197
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=57.56 E-value=34 Score=28.64 Aligned_cols=32 Identities=25% Similarity=0.248 Sum_probs=21.9
Q ss_pred CCCEEEECCCCCCCCCchHHHHHHHHHHcCCC
Q psy17159 110 KVDGIIVPGGFGKRGLEGKIAACKWARENNKP 141 (326)
Q Consensus 110 ~~dglilpGG~~~~~~~~~~~~i~~~~~~~~P 141 (326)
.+|.||.+||-|.....-..++++.+.+...|
T Consensus 61 ~~DlVittGG~s~g~~D~t~~al~~~~~~~l~ 92 (152)
T cd00886 61 GVDLILTTGGTGLAPRDVTPEATRPLLDKELP 92 (152)
T ss_pred CCCEEEECCCcCCCCCcCcHHHHHHHhCCcCc
Confidence 69999999987665544555677666554444
No 198
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=56.59 E-value=79 Score=31.37 Aligned_cols=37 Identities=14% Similarity=0.110 Sum_probs=23.1
Q ss_pred eEEEEEcccCCCchh------HHHHHHHHHHHhhhcCCceEEEEeec
Q psy17159 46 VTIGLVGKYTKFEDC------YASLTRALEHASYHSNRHLQLKYFDS 86 (326)
Q Consensus 46 ~~I~iigdyg~~~~~------~~Si~~aL~~~g~~~~~~v~~~~i~~ 86 (326)
+||+|+|-||. +| ..+++.+|+...-. +++.+....+
T Consensus 1 ~~i~i~G~~g~--~N~GdeAil~~ii~~l~~~~p~--~~i~v~S~~P 43 (426)
T PRK10017 1 MKLLILGNHTC--GNRGDSAILRGLLDAINILNPH--AEVDVMSRYP 43 (426)
T ss_pred CeEEEEccccC--CCccHHHHHHHHHHHHHhhCCC--CeEEEEecCc
Confidence 58999999998 66 45566666666543 2344443333
No 199
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=55.40 E-value=48 Score=28.47 Aligned_cols=98 Identities=16% Similarity=0.147 Sum_probs=52.6
Q ss_pred eEEEEEcccCCCchhHHH-HHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCC
Q psy17159 46 VTIGLVGKYTKFEDCYAS-LTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRG 124 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~S-i~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~ 124 (326)
++|++| .+..+|.+ +.++-......-...+++......++. .+|..+++..+.+..+|-||.+==|....
T Consensus 1 ~r~V~v----tld~~~~~al~~aa~~l~~~~~p~l~l~~~~~~el~-----~~~~~~~~~~~aia~ADii~~smlF~ed~ 71 (164)
T PF11965_consen 1 MRFVIV----TLDEHYNSALYRAAARLNRDHCPGLELSVFAAAELE-----RDPEALEECEAAIARADIIFGSMLFIEDH 71 (164)
T ss_pred CEEEEE----eCchhhhHHHHHHHHHHhhccCCCeEEEEEeHHHhh-----cChHHHHHHHHHHHhCCEEEeehhhhHHH
Confidence 356666 22244444 233333332221234555555544442 36767777888999999998765443222
Q ss_pred CchHHHHHHHHHHcCCCEEEEehhHHHHH
Q psy17159 125 LEGKIAACKWARENNKPFLGICLGLQAAV 153 (326)
Q Consensus 125 ~~~~~~~i~~~~~~~~PvLGIClG~QlL~ 153 (326)
...+...+... ....|+.=+|..+--+.
T Consensus 72 v~~l~~~L~~~-r~~~~a~i~~~sapelm 99 (164)
T PF11965_consen 72 VRPLLPALEAR-RDHCPAMIIFESAPELM 99 (164)
T ss_pred HHHHHHHHHHH-HccCCEEEEEcCHHHHH
Confidence 22223333322 23799999998844443
No 200
>PRK01215 competence damage-inducible protein A; Provisional
Probab=54.91 E-value=20 Score=33.14 Aligned_cols=48 Identities=15% Similarity=0.077 Sum_probs=28.4
Q ss_pred hhcCCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEehhHHHHHHHh
Q psy17159 107 DFCKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGLQAAVIEY 156 (326)
Q Consensus 107 ~l~~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~ 156 (326)
.++.+|.||++||-|.....-..+++..+. ++++-+.=--++.|-..+
T Consensus 59 a~~~~DlVIttGG~g~t~dD~t~eaia~~~--g~~l~~~~e~~~~l~~~~ 106 (264)
T PRK01215 59 AIDRADVVVSTGGLGPTYDDKTNEGFAKAL--GVELELNEDALRMILEKY 106 (264)
T ss_pred HhcCCCEEEEeCCCcCChhhhHHHHHHHHh--CCCCCCCHHHHHHHHHHH
Confidence 345789999999876554444455555543 455555544455554434
No 201
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=54.48 E-value=23 Score=34.53 Aligned_cols=67 Identities=9% Similarity=0.103 Sum_probs=40.9
Q ss_pred hhhcCCCceEEEEEcccCCCchhHHHHHHHHHHHhh--hcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEE
Q psy17159 38 RIDRLNKTVTIGLVGKYTKFEDCYASLTRALEHASY--HSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGII 115 (326)
Q Consensus 38 ~~~~~~~~~~I~iigdyg~~~~~~~Si~~aL~~~g~--~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dgli 115 (326)
+|.....+.||+|+ |.+-.||-..+.+++..... ..+.+|.+..+.... +. ++...+.++|+||
T Consensus 240 ~~~~~~~~~kv~Iv--Y~S~~GnTe~mA~~ia~g~~~~~~g~~v~~~~~~~~~---------~~---~i~~~~~~~d~ii 305 (394)
T PRK11921 240 EWAANYQENQVTIL--YDTMWNSTRRMAEAIAEGIKKANKDVTVKLYNSAKSD---------KN---DIITEVFKSKAIL 305 (394)
T ss_pred HHhhcCCcCcEEEE--EECCchHHHHHHHHHHHHHhhcCCCCeEEEEECCCCC---------HH---HHHHHHHhCCEEE
Confidence 34344445678888 77878999999998876543 334455555443211 11 1223456799999
Q ss_pred ECC
Q psy17159 116 VPG 118 (326)
Q Consensus 116 lpG 118 (326)
+.-
T Consensus 306 ~Gs 308 (394)
T PRK11921 306 VGS 308 (394)
T ss_pred EEC
Confidence 864
No 202
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=54.23 E-value=1e+02 Score=25.36 Aligned_cols=75 Identities=16% Similarity=0.236 Sum_probs=42.5
Q ss_pred CCceEEEEEcccCCCchhHHHHHHHHHHHhhh-cCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCC
Q psy17159 43 NKTVTIGLVGKYTKFEDCYASLTRALEHASYH-SNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFG 121 (326)
Q Consensus 43 ~~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~-~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~ 121 (326)
....+|+|+|+ +.+...+..|. +.. -+..+.+..++.. ..+..||.|+|+.+..
T Consensus 25 ~~~~~icv~g~-----~~~~~~L~~l~--~~~~~~~~i~v~~~~~~------------------~~~~~C~ilyi~~~~~ 79 (145)
T PF13689_consen 25 SSPFRICVLGD-----DPFAEALSTLA--GKQVGGRPIRVRRLSSP------------------NEISGCHILYISSSES 79 (145)
T ss_pred CCCeEEEEECC-----hHHHHHHHHhh--hcccCCCcEEEEECCCC------------------cccccccEEEECCCCh
Confidence 45689999965 23444344442 221 2345666665421 1467999999998742
Q ss_pred CCCCchHHHHHHHHHHcCCCEEEEehh
Q psy17159 122 KRGLEGKIAACKWARENNKPFLGICLG 148 (326)
Q Consensus 122 ~~~~~~~~~~i~~~~~~~~PvLGIClG 148 (326)
.....+++.+ .+.|+|=|+-+
T Consensus 80 ----~~~~~i~~~~--~~~~vLtIsd~ 100 (145)
T PF13689_consen 80 ----SQLPEILRKL--PGKPVLTISDG 100 (145)
T ss_pred ----HHHHHHHHhc--CCCceEEEECC
Confidence 1222333322 47899988743
No 203
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=52.66 E-value=57 Score=30.00 Aligned_cols=34 Identities=24% Similarity=0.289 Sum_probs=25.9
Q ss_pred hhcCCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEe
Q psy17159 107 DFCKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 107 ~l~~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
.+..+|.||+.. | .....+|++|...++|+.|+|
T Consensus 115 ~f~~P~llIV~D-p-----~~d~qAI~EA~~lnIPvIal~ 148 (249)
T PTZ00254 115 KFMEPRLLIVTD-P-----RTDHQAIREASYVNIPVIALC 148 (249)
T ss_pred ccCCCCEEEEeC-C-----CcchHHHHHHHHhCCCEEEEe
Confidence 346788888875 1 223468889989999999999
No 204
>PRK03094 hypothetical protein; Provisional
Probab=51.90 E-value=30 Score=26.09 Aligned_cols=43 Identities=23% Similarity=0.321 Sum_probs=30.0
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGG 119 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG 119 (326)
.||||= .++..+..+|+..|+.+ +-+.. ....+.+|++|++|-
T Consensus 2 ~kIaVE-------~~Ls~i~~~L~~~GYeV------v~l~~------------------~~~~~~~Da~VitG~ 44 (80)
T PRK03094 2 AKIGVE-------QSLTDVQQALKQKGYEV------VQLRS------------------EQDAQGCDCCVVTGQ 44 (80)
T ss_pred CeEEee-------cCcHHHHHHHHHCCCEE------EecCc------------------ccccCCcCEEEEeCC
Confidence 368876 56788999999999853 12221 013678999999994
No 205
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=51.84 E-value=10 Score=30.75 Aligned_cols=45 Identities=18% Similarity=0.110 Sum_probs=27.3
Q ss_pred hhhhhcCCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEehh
Q psy17159 104 TWSDFCKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLG 148 (326)
Q Consensus 104 ~~~~l~~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIClG 148 (326)
+.+.|..++.+|+--|+-+......-..|..+++.++|++||.+.
T Consensus 64 I~~~i~~s~~~IVLig~~T~~s~wV~~EI~~A~~~~~~Ii~V~~~ 108 (130)
T PF08937_consen 64 IRERIKNSSVTIVLIGPNTAKSKWVNWEIEYALKKGKPIIGVYLP 108 (130)
T ss_dssp HHHHHHTEEEEEEE--TT----HHHHHHHHHHTTT---EEEEETT
T ss_pred HHHHHhcCCEEEEEeCCCcccCcHHHHHHHHHHHCCCCEEEEECC
Confidence 455677899988887876654445556778888899999999853
No 206
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=51.37 E-value=73 Score=28.38 Aligned_cols=77 Identities=16% Similarity=0.201 Sum_probs=44.7
Q ss_pred ceEEEEEcccCCCchhHHHHHHHHHHHhhhcCC-ceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCC
Q psy17159 45 TVTIGLVGKYTKFEDCYASLTRALEHASYHSNR-HLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKR 123 (326)
Q Consensus 45 ~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~-~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~ 123 (326)
..+|.+| ++.....++++..+..++. -+.-.|+.- .|+.... +....+|.||+..-
T Consensus 67 ~~~ILfV-------gTk~~~~~~v~k~A~~~g~~~v~~RWlgG-~LTN~~~-----------~~~~~Pdliiv~dp---- 123 (204)
T PRK04020 67 PEKILVV-------SSRQYGQKPVQKFAEVVGAKAITGRFIPG-TLTNPSL-----------KGYIEPDVVVVTDP---- 123 (204)
T ss_pred CCeEEEE-------eCCHHHHHHHHHHHHHhCCeeecCccCCC-cCcCcch-----------hccCCCCEEEEECC----
Confidence 4578888 3333344455555544433 233356653 2222110 12236788888752
Q ss_pred CCchHHHHHHHHHHcCCCEEEEe
Q psy17159 124 GLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 124 ~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
.....+|++|...++|+.|+|
T Consensus 124 --~~~~~AI~EA~kl~IP~Iaiv 144 (204)
T PRK04020 124 --RGDAQAVKEAIEVGIPVVALC 144 (204)
T ss_pred --cccHHHHHHHHHhCCCEEEEE
Confidence 223568899999999999999
No 207
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=50.35 E-value=1.1e+02 Score=27.71 Aligned_cols=72 Identities=14% Similarity=-0.098 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhh-h-cCCCEEEECCCCCCCCCchHHHHHHHHHHc
Q psy17159 61 YASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSD-F-CKVDGIIVPGGFGKRGLEGKIAACKWAREN 138 (326)
Q Consensus 61 ~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~-l-~~~dglilpGG~~~~~~~~~~~~i~~~~~~ 138 (326)
+..+.+.+.......+..+.+.+.... ++....+..+. + ..+||||+.+... ......++.+.+.
T Consensus 14 ~~~~~~gi~~~a~~~g~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~dgiii~~~~~----~~~~~~i~~~~~~ 80 (294)
T cd06316 14 SNAQVRGAKDEFAKLGIEVVATTDAQF---------DPAKQVADIETTISQKPDIIISIPVDP----VSTAAAYKKVAEA 80 (294)
T ss_pred HHHHHHHHHHHHHHcCCEEEEecCCCC---------CHHHHHHHHHHHHHhCCCEEEEcCCCc----hhhhHHHHHHHHc
Confidence 455777777777666555443322211 11100011112 2 4799999975321 1123456666678
Q ss_pred CCCEEEE
Q psy17159 139 NKPFLGI 145 (326)
Q Consensus 139 ~~PvLGI 145 (326)
++|+..+
T Consensus 81 ~iPvV~~ 87 (294)
T cd06316 81 GIKLVFM 87 (294)
T ss_pred CCcEEEe
Confidence 8998654
No 208
>PRK09267 flavodoxin FldA; Validated
Probab=49.13 E-value=50 Score=27.79 Aligned_cols=53 Identities=11% Similarity=0.114 Sum_probs=33.6
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPG 118 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpG 118 (326)
+||+|+ |++..||-..+.+.|...... ..+.+.-+... . ...+.++|.|||..
T Consensus 2 mki~Ii--Y~S~tGnT~~vA~~Ia~~l~~--~~~~~~~~~~~---------~-------~~~l~~~d~vi~g~ 54 (169)
T PRK09267 2 AKIGIF--FGSDTGNTEDIAKMIQKKLGK--DVADVVDIAKA---------S-------KEDFEAYDLLILGI 54 (169)
T ss_pred CeEEEE--EECCCChHHHHHHHHHHHhCC--CceEEEEhhhC---------C-------HhhHhhCCEEEEEe
Confidence 578888 778889999999888765431 12333322210 0 12577899998875
No 209
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=49.04 E-value=1.1e+02 Score=27.10 Aligned_cols=71 Identities=18% Similarity=0.164 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhh-h-cCCCEEEECCCCCCCCCchHHHHHHHHHHc
Q psy17159 61 YASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSD-F-CKVDGIIVPGGFGKRGLEGKIAACKWAREN 138 (326)
Q Consensus 61 ~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~-l-~~~dglilpGG~~~~~~~~~~~~i~~~~~~ 138 (326)
+..+.+.+.++..+.+..+.+ .++.. ++..-.+..+. + ..+||||+.++.. ......++.+.+.
T Consensus 14 ~~~~~~gi~~~~~~~g~~~~~--~~~~~--------~~~~~~~~l~~~~~~~vdgii~~~~~~----~~~~~~i~~~~~~ 79 (273)
T cd06305 14 DQAYLAGTKAEAEALGGDLRV--YDAGG--------DDAKQADQIDQAIAQKVDAIIIQHGRA----EVLKPWVKRALDA 79 (273)
T ss_pred HHHHHHHHHHHHHHcCCEEEE--ECCCC--------CHHHHHHHHHHHHHcCCCEEEEecCCh----hhhHHHHHHHHHc
Confidence 455777777777666554444 22210 11111011111 2 3799999976421 1123445666677
Q ss_pred CCCEEEE
Q psy17159 139 NKPFLGI 145 (326)
Q Consensus 139 ~~PvLGI 145 (326)
++|+..+
T Consensus 80 ~ipvV~~ 86 (273)
T cd06305 80 GIPVVAF 86 (273)
T ss_pred CCCEEEe
Confidence 8887655
No 210
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=47.82 E-value=9.5 Score=32.05 Aligned_cols=101 Identities=15% Similarity=0.140 Sum_probs=46.0
Q ss_pred CceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCC-Cchhhc--chhhhhcCCCEEEECCCC
Q psy17159 44 KTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTG-NMAEYH--KTWSDFCKVDGIIVPGGF 120 (326)
Q Consensus 44 ~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~-~~~~~~--~~~~~l~~~dglilpGG~ 120 (326)
..-+|+.+|-=| .=..+++-+.-+-. +...+.++++..++++..... ...=|+ .....++ +|.|||-||-
T Consensus 18 ~~~kIvf~Gs~G----vCtPFaeL~~Y~iR--~~~~~~~FiP~~d~e~a~~l~~~~~Gmq~~~~~~~~~-~D~vVlmGGL 90 (147)
T PF09897_consen 18 DGEKIVFIGSPG----VCTPFAELFAYAIR--DKVKEQYFIPDADLEKARKLEVTDIGMQVLGEKKDPH-PDVVVLMGGL 90 (147)
T ss_dssp T-SEEEEEE-TT----TTHHHHHHHHHHTT--TS--EEEEEETT-GGG-EEEEEETTEEE-EEEE--S--EEEEEEEGGG
T ss_pred CCCeEEEeCCCc----ccccHHHHHHHHHh--hhccceeecCCCChhhhheeeccCcccccccccCCCC-CCEEEEEccc
Confidence 345788885543 23444433322222 223466777765554421000 000011 0112344 8999999997
Q ss_pred CCCCC----chHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 121 GKRGL----EGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 121 ~~~~~----~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
..+.. +..-++|... ..+.+.||| +|-|...
T Consensus 91 AMP~~~v~~e~v~~li~ki--~~~~iiGiC--Fms~F~k 125 (147)
T PF09897_consen 91 AMPKSGVTPEDVNELIKKI--SPKKIIGIC--FMSMFEK 125 (147)
T ss_dssp GSTTTS--HHHHHHHHHHH--EEEEEEEEE--ETTHHHH
T ss_pred ccCCCCCCHHHHHHHHHHh--CcCCEEEEe--hHHHHHH
Confidence 66543 2333444443 234499999 4444443
No 211
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=47.65 E-value=1.2e+02 Score=27.11 Aligned_cols=76 Identities=16% Similarity=0.157 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCCCCchHHHHHHHHH
Q psy17159 59 DCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKRGLEGKIAACKWAR 136 (326)
Q Consensus 59 ~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~~~~~~~~~i~~~~ 136 (326)
..+.++.+.++++....+..+.+...+. . ++..-.+..+.+ ..+||||+.+... ......++.+.
T Consensus 13 ~~~~~~~~g~~~~~~~~g~~v~~~~~~~--~-------~~~~~~~~i~~l~~~~vdgiii~~~~~----~~~~~~l~~~~ 79 (271)
T cd06312 13 PFWTVVKNGAEDAAKDLGVDVEYRGPET--F-------DVADMARLIEAAIAAKPDGIVVTIPDP----DALDPAIKRAV 79 (271)
T ss_pred cHHHHHHHHHHHHHHHhCCEEEEECCCC--C-------CHHHHHHHHHHHHHhCCCEEEEeCCCh----HHhHHHHHHHH
Confidence 3466788888888877665554433221 0 111000111122 4799999976321 12234566666
Q ss_pred HcCCCEEEEeh
Q psy17159 137 ENNKPFLGICL 147 (326)
Q Consensus 137 ~~~~PvLGICl 147 (326)
+.++|+.-+..
T Consensus 80 ~~~ipvV~~~~ 90 (271)
T cd06312 80 AAGIPVISFNA 90 (271)
T ss_pred HCCCeEEEeCC
Confidence 77899988753
No 212
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=47.56 E-value=1.4e+02 Score=26.51 Aligned_cols=85 Identities=19% Similarity=0.166 Sum_probs=42.1
Q ss_pred EEEEE-cccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCC
Q psy17159 47 TIGLV-GKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKR 123 (326)
Q Consensus 47 ~I~ii-gdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~ 123 (326)
||||| .++.. .-+..+...++.+....+..+.+...++. .++..-.+..+.+ ..+||||+.+...
T Consensus 1 ~Igvi~~~~~~--~~~~~~~~g~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~~i~~l~~~~vdgvii~~~~~-- 68 (273)
T cd06310 1 KIALVPKGTTS--DFWQAVKAGAEAAAKELGVKVTFQGPASE--------TDVAGQVNLLENAIARGPDAILLAPTDA-- 68 (273)
T ss_pred CeEEEecCCCc--HHHHHHHHHHHHHHHHcCCEEEEecCccC--------CCHHHHHHHHHHHHHhCCCEEEEcCCCh--
Confidence 46655 23321 33666777887777665544433321100 0111000111122 3799999975421
Q ss_pred CCchHHHHHHHHHHcCCCEEEE
Q psy17159 124 GLEGKIAACKWARENNKPFLGI 145 (326)
Q Consensus 124 ~~~~~~~~i~~~~~~~~PvLGI 145 (326)
......++.+...++|+..+
T Consensus 69 --~~~~~~l~~~~~~~ipvV~~ 88 (273)
T cd06310 69 --KALVPPLKEAKDAGIPVVLI 88 (273)
T ss_pred --hhhHHHHHHHHHCCCCEEEe
Confidence 11234556666678888766
No 213
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=47.33 E-value=1.7e+02 Score=25.68 Aligned_cols=70 Identities=13% Similarity=0.130 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCCCCchHHHHHHHHHH
Q psy17159 60 CYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKRGLEGKIAACKWARE 137 (326)
Q Consensus 60 ~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~~~~~~~~~i~~~~~ 137 (326)
-+.++.+.+.++....+..+.+...+.. +.+..+..+.+ ..+||||+.+.... ...++.+..
T Consensus 13 ~~~~~~~gi~~~~~~~g~~~~~~~~~~~----------~~~~~~~~~~l~~~~vdgiii~~~~~~------~~~~~~~~~ 76 (268)
T cd01575 13 VFADVLQGISDVLEAAGYQLLLGNTGYS----------PEREEELLRTLLSRRPAGLILTGLEHT------ERTRQLLRA 76 (268)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEecCCCC----------chhHHHHHHHHHHcCCCEEEEeCCCCC------HHHHHHHHh
Confidence 3566777777777666655544332210 11101112222 47999999864321 123444556
Q ss_pred cCCCEEEE
Q psy17159 138 NNKPFLGI 145 (326)
Q Consensus 138 ~~~PvLGI 145 (326)
.++|+..+
T Consensus 77 ~~ipvv~~ 84 (268)
T cd01575 77 AGIPVVEI 84 (268)
T ss_pred cCCCEEEE
Confidence 68898865
No 214
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=47.08 E-value=2.1e+02 Score=25.86 Aligned_cols=44 Identities=32% Similarity=0.478 Sum_probs=32.0
Q ss_pred CCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEehhHHHHHHHhCccc
Q psy17159 110 KVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSV 160 (326)
Q Consensus 110 ~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~ 160 (326)
.+|++||+= |+++ .+..+|+. ..+|+.|||--.-..+...|++.
T Consensus 69 GvdaiiIaC-f~DP----gl~~~Re~--~~~PviGi~eAsv~~A~~vgrrf 112 (230)
T COG4126 69 GVDAIIIAC-FSDP----GLAAARER--AAIPVIGICEASVLAALFVGRRF 112 (230)
T ss_pred CCcEEEEEe-cCCh----HHHHHHHH--hCCCceehhHHHHHHHHHhcceE
Confidence 588988874 3332 34566654 37999999999888888878764
No 215
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=46.27 E-value=63 Score=24.81 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=23.0
Q ss_pred hhhcCCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEE
Q psy17159 106 SDFCKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFL 143 (326)
Q Consensus 106 ~~l~~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvL 143 (326)
..|..||+|++-+|... ..|...-...|.+.++||+
T Consensus 55 ~~L~~cD~i~~l~gWe~--S~GA~~E~~~A~~lGl~V~ 90 (92)
T PF14359_consen 55 AMLSDCDAIYMLPGWEN--SRGARLEHELAKKLGLPVI 90 (92)
T ss_pred HHHHhCCEEEEcCCccc--CcchHHHHHHHHHCCCeEe
Confidence 35679999999887532 2344444455666778774
No 216
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=44.96 E-value=1.2e+02 Score=26.39 Aligned_cols=71 Identities=18% Similarity=0.160 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCCCCchHHHHHHHHH
Q psy17159 59 DCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKRGLEGKIAACKWAR 136 (326)
Q Consensus 59 ~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~~~~~~~~~i~~~~ 136 (326)
..+..+.+.++.+....+..+.+.+-+.. +....+..+.+ ..+|+||+.+.... . .. ++.+.
T Consensus 12 ~~~~~~~~g~~~~~~~~g~~~~~~~~~~~----------~~~~~~~~~~~~~~~~d~iii~~~~~~----~-~~-~~~~~ 75 (264)
T cd06267 12 PFFAELLRGIEEAAREAGYSVLLCNSDED----------PEKEREALELLLSRRVDGIILAPSRLD----D-EL-LEELA 75 (264)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEcCCCC----------HHHHHHHHHHHHHcCcCEEEEecCCcc----h-HH-HHHHH
Confidence 34566777777777665555444333211 11000111122 47999999875431 1 12 66666
Q ss_pred HcCCCEEEE
Q psy17159 137 ENNKPFLGI 145 (326)
Q Consensus 137 ~~~~PvLGI 145 (326)
+.++|+..+
T Consensus 76 ~~~ipvv~~ 84 (264)
T cd06267 76 ALGIPVVLV 84 (264)
T ss_pred HcCCCEEEe
Confidence 789998776
No 217
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.93 E-value=24 Score=32.84 Aligned_cols=35 Identities=26% Similarity=0.403 Sum_probs=26.9
Q ss_pred cCCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEehh
Q psy17159 109 CKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLG 148 (326)
Q Consensus 109 ~~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIClG 148 (326)
..+|.+|.-||-| .++.+.+.+...++|+|||=.|
T Consensus 41 ~~~d~vi~iGGDG-----T~L~aa~~~~~~~~PilgIn~G 75 (272)
T PRK02231 41 QRAQLAIVIGGDG-----NMLGRARVLAKYDIPLIGINRG 75 (272)
T ss_pred cCCCEEEEECCcH-----HHHHHHHHhccCCCcEEEEeCC
Confidence 3689999999854 3456666666678999999988
No 218
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=44.09 E-value=53 Score=30.38 Aligned_cols=45 Identities=20% Similarity=0.206 Sum_probs=25.4
Q ss_pred hhhhhcCCCEEEECCCCCCC---CCch---HHHHHHHHHHcCCCEEEEehh
Q psy17159 104 TWSDFCKVDGIIVPGGFGKR---GLEG---KIAACKWARENNKPFLGICLG 148 (326)
Q Consensus 104 ~~~~l~~~dglilpGG~~~~---~~~~---~~~~i~~~~~~~~PvLGIClG 148 (326)
..+.+..+|.+|+.||.-.. .... ....+..+...++|++-...|
T Consensus 58 ~~~~l~~~D~vI~gGG~l~~d~~~~~~~~~~~~~~~~a~~~~k~~~~~g~g 108 (298)
T TIGR03609 58 VLRALRRADVVIWGGGSLLQDVTSFRSLLYYLGLMRLARLFGKPVILWGQG 108 (298)
T ss_pred HHHHHHHCCEEEECCcccccCCcccccHHHHHHHHHHHHHcCCCEEEEecc
Confidence 34567799999998874221 1111 122344455568887555444
No 219
>PRK00549 competence damage-inducible protein A; Provisional
Probab=44.06 E-value=50 Score=32.64 Aligned_cols=48 Identities=15% Similarity=-0.001 Sum_probs=27.2
Q ss_pred hhcCCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEehhHHHHHHHh
Q psy17159 107 DFCKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGLQAAVIEY 156 (326)
Q Consensus 107 ~l~~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~ 156 (326)
.++.+|-||++||-|.....-..+++..++ +.|+..-=--++.|-..+
T Consensus 56 a~~~~DlVItTGGlGpt~dD~t~ea~a~~~--g~~l~~~~~~~~~i~~~~ 103 (414)
T PRK00549 56 AEERSDLIITTGGLGPTKDDLTKETVAKFL--GRELVLDEEALAKIEDYF 103 (414)
T ss_pred hccCCCEEEECCCCCCCCCccHHHHHHHHh--CCCCcCCHHHHHHHHHHH
Confidence 346899999999866544333444544432 455554444455554433
No 220
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=43.79 E-value=1.5e+02 Score=26.09 Aligned_cols=75 Identities=16% Similarity=0.171 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhh-hh-cCCCEEEECCCCCCCCCchHHHHHHHHHHc
Q psy17159 61 YASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWS-DF-CKVDGIIVPGGFGKRGLEGKIAACKWAREN 138 (326)
Q Consensus 61 ~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~-~l-~~~dglilpGG~~~~~~~~~~~~i~~~~~~ 138 (326)
+..+.+.++.+....+..+.+. .+... ++....+..+ .+ ..+||||+.+... ......++.+.+.
T Consensus 13 ~~~~~~g~~~~a~~~g~~~~~~-~~~~~--------d~~~q~~~i~~~i~~~~d~Iiv~~~~~----~~~~~~l~~~~~~ 79 (257)
T PF13407_consen 13 WQQVIKGAKAAAKELGYEVEIV-FDAQN--------DPEEQIEQIEQAISQGVDGIIVSPVDP----DSLAPFLEKAKAA 79 (257)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEE-EESTT--------THHHHHHHHHHHHHTTESEEEEESSST----TTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCEEEEe-CCCCC--------CHHHHHHHHHHHHHhcCCEEEecCCCH----HHHHHHHHHHhhc
Confidence 4447778887777766555554 23210 1111111112 22 4799999886432 2234677778888
Q ss_pred CCCEEEEehh
Q psy17159 139 NKPFLGICLG 148 (326)
Q Consensus 139 ~~PvLGIClG 148 (326)
++||.-+=.+
T Consensus 80 gIpvv~~d~~ 89 (257)
T PF13407_consen 80 GIPVVTVDSD 89 (257)
T ss_dssp TSEEEEESST
T ss_pred CceEEEEecc
Confidence 9999986544
No 221
>PF09075 STb_secrete: Heat-stable enterotoxin B, secretory; InterPro: IPR015160 Members of this family assume a helical secondary structure, with two alpha helices forming a disulphide cross-linked alpha-helical hairpin. The disulphide bonds are crucial for the toxic activity of the protein, and are required for maintenance of the tertiary structure, and subsequent interaction with the particulate form of guanylate cyclase, increasing cyclic GMP levels within the host intestinal epithelial cells []. ; PDB: 1EHS_A.
Probab=43.59 E-value=5.9 Score=25.50 Aligned_cols=17 Identities=35% Similarity=0.550 Sum_probs=11.1
Q ss_pred CEEEEehhHHHHHHHhC
Q psy17159 141 PFLGICLGLQAAVIEYG 157 (326)
Q Consensus 141 PvLGIClG~QlL~~~~g 157 (326)
-.-|-|+|.|+|..+-|
T Consensus 31 gtagacfgaqimvaakg 47 (48)
T PF09075_consen 31 GTAGACFGAQIMVAAKG 47 (48)
T ss_dssp SS--TTTTTHHHHTTT-
T ss_pred Cccccccchhhhhhccc
Confidence 35688999999986543
No 222
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=42.50 E-value=57 Score=31.60 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=28.7
Q ss_pred cCCCEEEECC-CCCCCCCchHHHHHHHHHHcCCCEEEE
Q psy17159 109 CKVDGIIVPG-GFGKRGLEGKIAACKWARENNKPFLGI 145 (326)
Q Consensus 109 ~~~dglilpG-G~~~~~~~~~~~~i~~~~~~~~PvLGI 145 (326)
..++||||-| |.|+. ....++.++++.++++||.=+
T Consensus 253 ~g~~GiVie~~G~G~~-~~~~~~~i~~~~~~gi~VV~s 289 (351)
T COG0252 253 SGAKGLVLEGTGSGNV-TPALIESIERASKRGIPVVYS 289 (351)
T ss_pred cCCCEEEEEEECCCCC-ChHHHHHHHHHHHCCCeEEEE
Confidence 4789999999 87743 346788999999999998654
No 223
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=42.25 E-value=1.9e+02 Score=24.56 Aligned_cols=75 Identities=24% Similarity=0.245 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCCCCchHHHHHHHHHH
Q psy17159 60 CYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKRGLEGKIAACKWARE 137 (326)
Q Consensus 60 ~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~~~~~~~~~i~~~~~ 137 (326)
.+..+.++++.+..+.+..+++.+.+... ++....+..+.+ ..+|+||+++.... ...++..+.+
T Consensus 14 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~d~ii~~~~~~~-----~~~~~~~~~~ 80 (269)
T cd01391 14 FGAQLLAGIELAAEEIGRGLEVILADSQS--------DPERALEALRDLIQQGVDGIIGPPSSSS-----ALAVVELAAA 80 (269)
T ss_pred HHHHHHHHHHHHHHHhCCceEEEEecCCC--------CHHHHHHHHHHHHHcCCCEEEecCCCHH-----HHHHHHHHHH
Confidence 45556677777666533455666655321 111111111222 36999999875321 1124555667
Q ss_pred cCCCEEEEeh
Q psy17159 138 NNKPFLGICL 147 (326)
Q Consensus 138 ~~~PvLGICl 147 (326)
.++|++.+=.
T Consensus 81 ~~ip~v~~~~ 90 (269)
T cd01391 81 AGIPVVSLDA 90 (269)
T ss_pred cCCcEEEecC
Confidence 7899987643
No 224
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=41.28 E-value=1.8e+02 Score=25.88 Aligned_cols=73 Identities=16% Similarity=0.110 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCCCCchHHHHHHHHHH
Q psy17159 60 CYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKRGLEGKIAACKWARE 137 (326)
Q Consensus 60 ~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~~~~~~~~~i~~~~~ 137 (326)
-+.++.+.+..++.+.+..+.+...+. +.....+..+.+ ..+||||+.+... ......++.+.+
T Consensus 13 ~~~~~~~~~~~~a~~~g~~~~~~~~~~----------~~~~~~~~i~~l~~~~vdgiIi~~~~~----~~~~~~i~~~~~ 78 (273)
T cd06309 13 WRTAETKSIKDAAEKRGFDLKFADAQQ----------KQENQISAIRSFIAQGVDVIILAPVVE----TGWDPVLKEAKA 78 (273)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEeCCCC----------CHHHHHHHHHHHHHcCCCEEEEcCCcc----ccchHHHHHHHH
Confidence 356688888888877665555432221 111111112222 3799999976421 111234566667
Q ss_pred cCCCEEEEe
Q psy17159 138 NNKPFLGIC 146 (326)
Q Consensus 138 ~~~PvLGIC 146 (326)
.++|+..+=
T Consensus 79 ~~iPvV~~~ 87 (273)
T cd06309 79 AGIPVILVD 87 (273)
T ss_pred CCCCEEEEe
Confidence 788887664
No 225
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=41.08 E-value=1.2e+02 Score=30.34 Aligned_cols=26 Identities=12% Similarity=-0.028 Sum_probs=18.7
Q ss_pred ceEEEEEcccCCCchhHHHHHHHHHHHhhh
Q psy17159 45 TVTIGLVGKYTKFEDCYASLTRALEHASYH 74 (326)
Q Consensus 45 ~~~I~iigdyg~~~~~~~Si~~aL~~~g~~ 74 (326)
.+||+|+ -.|. .=.+..+.|.+.|+.
T Consensus 7 ~~kv~V~-GLG~---sG~a~a~~L~~~G~~ 32 (448)
T COG0771 7 GKKVLVL-GLGK---SGLAAARFLLKLGAE 32 (448)
T ss_pred CCEEEEE-eccc---ccHHHHHHHHHCCCe
Confidence 4689999 4443 337889999988863
No 226
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=40.84 E-value=1.4e+02 Score=25.21 Aligned_cols=54 Identities=20% Similarity=0.185 Sum_probs=32.3
Q ss_pred cCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCC
Q psy17159 54 YTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGG 119 (326)
Q Consensus 54 yg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG 119 (326)
||. .++..+...++..+...+.++++..-+.+- .+. +. +.+..+.+|||||=+|
T Consensus 23 YG~--~tl~~i~~~~~~~a~~~g~~v~~~QSN~EG----elI---d~---I~~a~~~~dgiiINpg 76 (146)
T PRK05395 23 YGS--TTLADIEALLEEEAAELGVELEFFQSNHEG----ELI---DR---IHEARDGADGIIINPG 76 (146)
T ss_pred CCC--CCHHHHHHHHHHHHHHcCCEEEEEeeCcHH----HHH---HH---HHhcccCCcEEEECch
Confidence 776 778999999998887776655554433211 000 00 1112346899999654
No 227
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=40.69 E-value=2.5e+02 Score=24.78 Aligned_cols=76 Identities=12% Similarity=0.090 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCCCCchHHHHHHHHH
Q psy17159 59 DCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKRGLEGKIAACKWAR 136 (326)
Q Consensus 59 ~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~~~~~~~~~i~~~~ 136 (326)
.-+..+...++.+..+.+..+.+..... ++..-.+..+.+ ..+||||+.+.... ........++.+.
T Consensus 12 ~~~~~~~~gi~~~~~~~g~~~~~~~~~~----------~~~~~~~~i~~l~~~~vdgiIi~~~~~~-~~~~~~~~i~~~~ 80 (273)
T cd06292 12 PIFPAFAEAIEAALAQYGYTVLLCNTYR----------GGVSEADYVEDLLARGVRGVVFISSLHA-DTHADHSHYERLA 80 (273)
T ss_pred chHHHHHHHHHHHHHHCCCEEEEEeCCC----------ChHHHHHHHHHHHHcCCCEEEEeCCCCC-cccchhHHHHHHH
Confidence 3466678888887777665554432221 111000112223 47899998653211 1112334556666
Q ss_pred HcCCCEEEE
Q psy17159 137 ENNKPFLGI 145 (326)
Q Consensus 137 ~~~~PvLGI 145 (326)
+.++|+.-+
T Consensus 81 ~~~ipvV~i 89 (273)
T cd06292 81 ERGLPVVLV 89 (273)
T ss_pred hCCCCEEEE
Confidence 778998665
No 228
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=40.60 E-value=2e+02 Score=26.95 Aligned_cols=87 Identities=13% Similarity=0.048 Sum_probs=47.9
Q ss_pred CceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCC
Q psy17159 44 KTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFG 121 (326)
Q Consensus 44 ~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~ 121 (326)
++.+||++ -.+.-..-+.++.+.++++..+.+..+.+. .... ++..-.+..+.+ ..+||||+.+...
T Consensus 24 ~~~~Ig~i-~~~~~~~f~~~~~~gi~~~a~~~g~~l~i~--~~~~--------~~~~~~~~i~~l~~~~vDGiIi~~~~~ 92 (330)
T PRK10355 24 KEVKIGMA-IDDLRLERWQKDRDIFVKKAESLGAKVFVQ--SANG--------NEETQMSQIENMINRGVDVLVIIPYNG 92 (330)
T ss_pred CCceEEEE-ecCCCchHHHHHHHHHHHHHHHcCCEEEEE--CCCC--------CHHHHHHHHHHHHHcCCCEEEEeCCCh
Confidence 35688888 222212446678888888887766554443 3211 111001112222 3899999986321
Q ss_pred CCCCchHHHHHHHHHHcCCCEEEE
Q psy17159 122 KRGLEGKIAACKWARENNKPFLGI 145 (326)
Q Consensus 122 ~~~~~~~~~~i~~~~~~~~PvLGI 145 (326)
......++.+.+.++|+.-+
T Consensus 93 ----~~~~~~l~~~~~~~iPvV~i 112 (330)
T PRK10355 93 ----QVLSNVIKEAKQEGIKVLAY 112 (330)
T ss_pred ----hhHHHHHHHHHHCCCeEEEE
Confidence 11234566666778898876
No 229
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=40.42 E-value=2.1e+02 Score=25.32 Aligned_cols=68 Identities=19% Similarity=0.202 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCCCCchHHHHHHHHHH
Q psy17159 60 CYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKRGLEGKIAACKWARE 137 (326)
Q Consensus 60 ~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~~~~~~~~~i~~~~~ 137 (326)
.+.++.+.+++.....+..+.+...+.. + . +...+.+ ..+||||+.+.... ...++++.+
T Consensus 24 ~~~~~~~gi~~~~~~~g~~~~v~~~~~~--~-------~---~~~~~~l~~~~~dgiii~~~~~~------~~~~~~~~~ 85 (275)
T cd06295 24 FFLSLLGGIADALAERGYDLLLSFVSSP--D-------R---DWLARYLASGRADGVILIGQHDQ------DPLPERLAE 85 (275)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEeCCch--h-------H---HHHHHHHHhCCCCEEEEeCCCCC------hHHHHHHHh
Confidence 4666777787776666555544433211 0 0 1122233 47999999764321 133566667
Q ss_pred cCCCEEEE
Q psy17159 138 NNKPFLGI 145 (326)
Q Consensus 138 ~~~PvLGI 145 (326)
.++|+..+
T Consensus 86 ~~ipvV~~ 93 (275)
T cd06295 86 TGLPFVVW 93 (275)
T ss_pred CCCCEEEE
Confidence 78997643
No 230
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=39.63 E-value=1e+02 Score=28.31 Aligned_cols=20 Identities=20% Similarity=0.177 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHcCCCEEEEe
Q psy17159 127 GKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 127 ~~~~~i~~~~~~~~PvLGIC 146 (326)
....++.+|.+.++||.++|
T Consensus 167 ~e~iAv~EA~klgIPVvAlv 186 (252)
T COG0052 167 KEKIAVKEANKLGIPVVALV 186 (252)
T ss_pred HhHHHHHHHHHcCCCEEEEe
Confidence 34568899999999999999
No 231
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=39.29 E-value=1.9e+02 Score=26.13 Aligned_cols=71 Identities=14% Similarity=0.120 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhh-h-cCCCEEEECCCCCCCCCchHHHHHHHHHHc
Q psy17159 61 YASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSD-F-CKVDGIIVPGGFGKRGLEGKIAACKWAREN 138 (326)
Q Consensus 61 ~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~-l-~~~dglilpGG~~~~~~~~~~~~i~~~~~~ 138 (326)
+..+...++.+....+..+.+..... ++.+-.+..+. + ..+||||+.+... ......++.+.+.
T Consensus 14 ~~~~~~gi~~~a~~~g~~~~~~~~~~----------~~~~~~~~i~~~~~~~vdgiii~~~~~----~~~~~~l~~l~~~ 79 (288)
T cd01538 14 WIRDRPNFEAALKELGAEVIVQNANG----------DPAKQISQIENMIAKGVDVLVIAPVDG----EALASAVEKAADA 79 (288)
T ss_pred HHHHHHHHHHHHHHcCCEEEEECCCC----------CHHHHHHHHHHHHHcCCCEEEEecCCh----hhHHHHHHHHHHC
Confidence 55577777777766655444432211 11111111222 2 4799999976422 1123456666677
Q ss_pred CCCEEEE
Q psy17159 139 NKPFLGI 145 (326)
Q Consensus 139 ~~PvLGI 145 (326)
++|+..+
T Consensus 80 ~ipvV~~ 86 (288)
T cd01538 80 GIPVIAY 86 (288)
T ss_pred CCCEEEE
Confidence 8998766
No 232
>PRK07308 flavodoxin; Validated
Probab=38.82 E-value=1.3e+02 Score=24.49 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=33.1
Q ss_pred EEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEE
Q psy17159 47 TIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIV 116 (326)
Q Consensus 47 ~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglil 116 (326)
||.|+ |++..||-..+.++|.......+..+++.-++... ...+..+|.|||
T Consensus 3 ~~~Iv--Y~S~tGnTe~iA~~ia~~l~~~g~~~~~~~~~~~~----------------~~~l~~~d~vi~ 54 (146)
T PRK07308 3 LAKIV--YASMTGNTEEIADIVADKLRELGHDVDVDECTTVD----------------ASDFEDADIAIV 54 (146)
T ss_pred eEEEE--EECCCchHHHHHHHHHHHHHhCCCceEEEecccCC----------------HhHhccCCEEEE
Confidence 56666 77778999999988877654444444443332110 125678899988
No 233
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=38.25 E-value=1.4e+02 Score=28.33 Aligned_cols=74 Identities=18% Similarity=0.113 Sum_probs=44.3
Q ss_pred HHHHHHhhcCCCCCCCeeeCCCCCcccccch----h---hhhc--CCCceEEEEEcccCCCchhHHHHHHHHHHHhhhcC
Q psy17159 6 SVRAKISMFCHVTPENVIFNPDVKPIYKVRM----L---RIDR--LNKTVTIGLVGKYTKFEDCYASLTRALEHASYHSN 76 (326)
Q Consensus 6 ~~~~ki~~~~~~~~~~v~~~~~~~~~y~~p~----~---~~~~--~~~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~ 76 (326)
..-+.+|.|.++. -|||.=|-.. +.|. + .+.. .-..++|+|+||.- +.-.-+|.+++|...|+
T Consensus 114 gaa~~~a~~~~~~--pvINaGDG~~--qHPTQ~LLDl~TI~~~~G~~~gl~iaivGDlk-hsRva~S~~~~L~~~ga--- 185 (316)
T COG0540 114 GAARLLAEFSGVN--PVINAGDGSH--QHPTQALLDLYTIREEFGRLDGLKIAIVGDLK-HSRVAHSNIQALKRFGA--- 185 (316)
T ss_pred cHHHHHHHhcCCC--ceEECCCCCC--CCccHHHHHHHHHHHHhCCcCCcEEEEEcccc-chHHHHHHHHHHHHcCC---
Confidence 4556778888885 3999988774 2343 1 1111 13458999999962 22355666667766664
Q ss_pred CceEEEEeeccccc
Q psy17159 77 RHLQLKYFDSELLS 90 (326)
Q Consensus 77 ~~v~~~~i~~~~l~ 90 (326)
++..+.+.++.
T Consensus 186 ---~v~lvsP~~L~ 196 (316)
T COG0540 186 ---EVYLVSPETLL 196 (316)
T ss_pred ---EEEEECchHhC
Confidence 34555555544
No 234
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=38.18 E-value=2.3e+02 Score=25.04 Aligned_cols=74 Identities=16% Similarity=0.236 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhh-h-cCCCEEEECCCCCCCCCchHHHHHHHHHH
Q psy17159 60 CYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSD-F-CKVDGIIVPGGFGKRGLEGKIAACKWARE 137 (326)
Q Consensus 60 ~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~-l-~~~dglilpGG~~~~~~~~~~~~i~~~~~ 137 (326)
-+.++.+.+.++..+.+..+.+....+.. ++.+-.+..+. + ..+||||+.+... ......++.+.+
T Consensus 13 ~~~~~~~gi~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~i~~~~~~~~dgiIi~~~~~----~~~~~~i~~~~~ 80 (271)
T cd06321 13 FFVALAKGAEAAAKKLNPGVKVTVVSADY--------DLNKQVSQIDNFIAAKVDLILLNAVDS----KGIAPAVKRAQA 80 (271)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEccCCC--------CHHHHHHHHHHHHHhCCCEEEEeCCCh----hHhHHHHHHHHH
Confidence 35667888888877744444544433211 11100011112 2 4799999975321 122345666667
Q ss_pred cCCCEEEE
Q psy17159 138 NNKPFLGI 145 (326)
Q Consensus 138 ~~~PvLGI 145 (326)
.++|+.-+
T Consensus 81 ~~ipvv~~ 88 (271)
T cd06321 81 AGIVVVAV 88 (271)
T ss_pred CCCeEEEe
Confidence 78887766
No 235
>PRK12359 flavodoxin FldB; Provisional
Probab=38.09 E-value=86 Score=27.02 Aligned_cols=53 Identities=13% Similarity=0.092 Sum_probs=34.0
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPG 118 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpG 118 (326)
|||+|+ |++..||-..+.+.|...... ..+++.-+... ..+.+.++|.||+.-
T Consensus 1 Mki~I~--Y~S~TGNTe~vAe~I~~~lg~--~~v~v~~i~~~----------------~~~~l~~yD~iIlG~ 53 (172)
T PRK12359 1 MKIGLF--YGSSTCYTEMAAEKIRDIIGE--ELVDLHNLKDD----------------PPKLMEQYDVLILGI 53 (172)
T ss_pred CeEEEE--EECCCCHHHHHHHHHHHHhCC--CeEEEEEcccC----------------ChhHHccCCEEEEEe
Confidence 588888 888899999999998765321 11233322211 123678899988754
No 236
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=37.99 E-value=82 Score=26.35 Aligned_cols=53 Identities=17% Similarity=0.177 Sum_probs=31.6
Q ss_pred cCCCchhHHHHHHHHHHHhhhcCCceEEEEeeccc-ccCCCCCCCchhhcchhhhhcCCCEEEECCC
Q psy17159 54 YTKFEDCYASLTRALEHASYHSNRHLQLKYFDSEL-LSMDPKTGNMAEYHKTWSDFCKVDGIIVPGG 119 (326)
Q Consensus 54 yg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~-l~~~~~~~~~~~~~~~~~~l~~~dglilpGG 119 (326)
||. .++..+.+.++..+...+.++++..-+.+- +- +.+.+..+++||+||=+|
T Consensus 22 YG~--~tl~~i~~~~~~~a~~~g~~v~~~QSN~EGeli-----------d~I~~a~~~~dgiIINpg 75 (140)
T PF01220_consen 22 YGT--TTLEDIEQKCKETAAELGVEVEFFQSNHEGELI-----------DWIHEARDDVDGIIINPG 75 (140)
T ss_dssp HTS--SHHHHHHHHHHHHHHHTTEEEEEEE-SSHHHHH-----------HHHHHHTCTTSEEEEE-G
T ss_pred CCc--CCHHHHHHHHHHHHHHCCCeEEEEecCCHHHHH-----------HHHHHHHhhCCEEEEccc
Confidence 776 778899999999988776555544333211 00 001223456999999554
No 237
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=37.97 E-value=1.1e+02 Score=29.08 Aligned_cols=87 Identities=17% Similarity=0.153 Sum_probs=55.7
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecc-cccCCCCCCCchhhcchhhh-hcCCCEEEECCCCCCC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSE-LLSMDPKTGNMAEYHKTWSD-FCKVDGIIVPGGFGKR 123 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~-~l~~~~~~~~~~~~~~~~~~-l~~~dglilpGG~~~~ 123 (326)
.+|+++ |.+-..|-.+..+.|+......+.+|....+++. ++. . +.+. +.+.|.|++|=- +.
T Consensus 160 k~Igv~--Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~v~~~ndi~--------~----a~~~l~g~~d~i~~p~d--n~ 223 (322)
T COG2984 160 KSIGVL--YNPGEANSVSLVEELKKEARKAGLEVVEAAVTSVNDIP--------R----AVQALLGKVDVIYIPTD--NL 223 (322)
T ss_pred eeEEEE--eCCCCcccHHHHHHHHHHHHHCCCEEEEEecCcccccH--------H----HHHHhcCCCcEEEEecc--hH
Confidence 579988 6665678888899999888877777776666532 111 1 1223 368899988732 11
Q ss_pred CCchHHHHHHHHHHcCCCEEEEehh
Q psy17159 124 GLEGKIAACKWARENNKPFLGICLG 148 (326)
Q Consensus 124 ~~~~~~~~i~~~~~~~~PvLGIClG 148 (326)
-....-.++..+.+.++|+++-=-+
T Consensus 224 i~s~~~~l~~~a~~~kiPli~sd~~ 248 (322)
T COG2984 224 IVSAIESLLQVANKAKIPLIASDTS 248 (322)
T ss_pred HHHHHHHHHHHHHHhCCCeecCCHH
Confidence 1123344567777889999875433
No 238
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=37.94 E-value=2.2e+02 Score=25.26 Aligned_cols=72 Identities=19% Similarity=0.182 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCCCCchHHHHHHHHHH
Q psy17159 60 CYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKRGLEGKIAACKWARE 137 (326)
Q Consensus 60 ~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~~~~~~~~~i~~~~~ 137 (326)
-+..+...+.+.+.+.+..+.+ ..+.. ++..-.+..+.+ ..+||||+.+.. . ......++.+.+
T Consensus 13 ~~~~~~~~i~~~~~~~g~~v~~--~~~~~--------~~~~~~~~i~~~~~~~~Dgiii~~~~-~---~~~~~~i~~~~~ 78 (282)
T cd06318 13 FFAALTEAAKAHAKALGYELIS--TDAQG--------DLTKQIADVEDLLTRGVNVLIINPVD-P---EGLVPAVAAAKA 78 (282)
T ss_pred HHHHHHHHHHHHHHHcCCEEEE--EcCCC--------CHHHHHHHHHHHHHcCCCEEEEecCC-c---cchHHHHHHHHH
Confidence 3566777888887766654433 22210 111000011112 479999997532 1 122345666667
Q ss_pred cCCCEEEE
Q psy17159 138 NNKPFLGI 145 (326)
Q Consensus 138 ~~~PvLGI 145 (326)
.++|+.-+
T Consensus 79 ~~iPvV~~ 86 (282)
T cd06318 79 AGVPVVVV 86 (282)
T ss_pred CCCCEEEe
Confidence 77886533
No 239
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=37.94 E-value=61 Score=31.99 Aligned_cols=35 Identities=29% Similarity=0.503 Sum_probs=28.8
Q ss_pred CCCEEEECC-CCCCCCCchHHHHHHHHHHcCCCEEEE
Q psy17159 110 KVDGIIVPG-GFGKRGLEGKIAACKWARENNKPFLGI 145 (326)
Q Consensus 110 ~~dglilpG-G~~~~~~~~~~~~i~~~~~~~~PvLGI 145 (326)
.++||||-| |.|+-. ..+...|+++.++++||.=+
T Consensus 299 g~~GiVleg~G~G~vp-~~~~~~l~~a~~~GipVV~t 334 (404)
T TIGR02153 299 GYKGIVIEGTGLGHVS-EDWIPSIKRATDDGVPVVMT 334 (404)
T ss_pred CCCEEEEeeECCCCCC-HHHHHHHHHHHHCCCEEEEe
Confidence 589999999 887654 25788999999999998766
No 240
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=37.73 E-value=60 Score=32.23 Aligned_cols=36 Identities=25% Similarity=0.427 Sum_probs=29.2
Q ss_pred cCCCEEEECC-CCCCCCCchHHHHHHHHHHcCCCEEEE
Q psy17159 109 CKVDGIIVPG-GFGKRGLEGKIAACKWARENNKPFLGI 145 (326)
Q Consensus 109 ~~~dglilpG-G~~~~~~~~~~~~i~~~~~~~~PvLGI 145 (326)
..++||||-| |.|+-.. .+...|+++.++++||.=+
T Consensus 311 ~g~~GiVleg~G~Gnvp~-~~~~~l~~a~~~Gi~VV~t 347 (419)
T PRK04183 311 KGYKGIVIEGTGLGHVST-DLIPSIKRATDDGIPVVMT 347 (419)
T ss_pred CCCCEEEEEeECCCCCCH-HHHHHHHHHHHCCCEEEEe
Confidence 3589999999 8876543 5788999999999998765
No 241
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=37.64 E-value=1.6e+02 Score=24.88 Aligned_cols=54 Identities=15% Similarity=0.142 Sum_probs=31.8
Q ss_pred cCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCC
Q psy17159 54 YTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGG 119 (326)
Q Consensus 54 yg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG 119 (326)
||. ..+..+...++..+...+.++++..-+.+- .+. + .+.+..+.+|||||=+|
T Consensus 23 YG~--~tl~~i~~~~~~~a~~~g~~~~~~QSN~EG----elI---d---~i~~a~~~~dgiIINpg 76 (146)
T PRK13015 23 YGH--ETLADVEALCRAAAEALGLEVEFRQSNHEG----ELI---D---WIHEARGDVAGIVINPG 76 (146)
T ss_pred CCC--CCHHHHHHHHHHHHHHcCCEEEEEeeCcHH----HHH---H---HHHHhhhcCCEEEEcch
Confidence 776 678899999998887776555544433211 000 0 01122346899999654
No 242
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=37.49 E-value=2e+02 Score=22.49 Aligned_cols=38 Identities=13% Similarity=0.156 Sum_probs=27.5
Q ss_pred hcCCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEeh
Q psy17159 108 FCKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICL 147 (326)
Q Consensus 108 l~~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGICl 147 (326)
+..-|.+|+-.-.|. .....++++.+.+++.|+++|+-
T Consensus 45 ~~~~d~vi~iS~sG~--t~~~~~~~~~a~~~g~~vi~iT~ 82 (128)
T cd05014 45 VTPGDVVIAISNSGE--TDELLNLLPHLKRRGAPIIAITG 82 (128)
T ss_pred CCCCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEeC
Confidence 445577776654442 24577889999999999999984
No 243
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=37.17 E-value=58 Score=30.14 Aligned_cols=48 Identities=19% Similarity=0.135 Sum_probs=33.1
Q ss_pred EEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEehh--------------------HHHHHHHhCccc
Q psy17159 113 GIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLG--------------------LQAAVIEYGRSV 160 (326)
Q Consensus 113 glilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIClG--------------------~QlL~~~~g~~~ 160 (326)
-|+|+.|..........++++.+.+.+++++.|..| |+-|+...||+.
T Consensus 168 iIllTDG~~~~~~~~~~~~~~~~~~~~v~vy~I~~~~~~~~~~~~~~~~~~~~~~~L~~iA~~TGG~~ 235 (296)
T TIGR03436 168 LIVISDGGDNRSRDTLERAIDAAQRADVAIYSIDARGLRAPDLGAGAKAGLGGPEALERLAEETGGRA 235 (296)
T ss_pred EEEEecCCCcchHHHHHHHHHHHHHcCCEEEEeccCccccCCcccccccCCCcHHHHHHHHHHhCCeE
Confidence 567787865433334456667777789999999986 666666677765
No 244
>PF09152 DUF1937: Domain of unknown function (DUF1937); InterPro: IPR015235 This entry is represented by Bacteriophage N15, Gp57. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a set of hypothetical bacterial and phage proteins whose exact function has not, as yet, been described. ; PDB: 1T1J_A.
Probab=37.11 E-value=27 Score=28.19 Aligned_cols=37 Identities=24% Similarity=0.142 Sum_probs=25.0
Q ss_pred hhcCCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEE
Q psy17159 107 DFCKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFL 143 (326)
Q Consensus 107 ~l~~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvL 143 (326)
.|+.+|+||++--+|-....|+-..|+.+.+.++||+
T Consensus 76 ~L~~c~~lvV~~i~GW~~S~Gi~~Ei~~a~~~~~~V~ 112 (116)
T PF09152_consen 76 FLDACDELVVLDIPGWDDSEGIWAEIEAAEEMGMPVF 112 (116)
T ss_dssp HHHH-SEEEE---TTGGG-HHHHHHHHHHHHTT-EEE
T ss_pred HHHhcceeEEecCCCccccccHHHHHHHHHHcCCeEE
Confidence 4578999999976665555688888888989999986
No 245
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=37.02 E-value=74 Score=29.40 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=20.0
Q ss_pred CCCEEEECC-CCCCCCCchHHHHHHHHHHcCCCEE
Q psy17159 110 KVDGIIVPG-GFGKRGLEGKIAACKWARENNKPFL 143 (326)
Q Consensus 110 ~~dglilpG-G~~~~~~~~~~~~i~~~~~~~~PvL 143 (326)
.+||||++| |.|.+.....+..++... .++|+|
T Consensus 171 ~aDavivtG~~TG~~~d~~~l~~vr~~~-~~~Pvl 204 (257)
T TIGR00259 171 LADAVILSGKTTGTEVDLELLKLAKETV-KDTPVL 204 (257)
T ss_pred CCCEEEECcCCCCCCCCHHHHHHHHhcc-CCCeEE
Confidence 489999999 666654434444444322 357863
No 246
>PRK10342 glycerate kinase I; Provisional
Probab=36.90 E-value=63 Score=31.66 Aligned_cols=44 Identities=18% Similarity=0.305 Sum_probs=29.3
Q ss_pred hhhhhcCCCEEEECC-CCCCC-CCc--hHHHHHHHHHHcCCCEEEEehh
Q psy17159 104 TWSDFCKVDGIIVPG-GFGKR-GLE--GKIAACKWARENNKPFLGICLG 148 (326)
Q Consensus 104 ~~~~l~~~dglilpG-G~~~~-~~~--~~~~~i~~~~~~~~PvLGIClG 148 (326)
+.+.++++| +||+| |.-+. ... ....+.+.+.+.++|+..||--
T Consensus 278 l~~~l~~AD-LVITGEG~~D~QTl~GK~p~gVa~~A~~~~vPviai~G~ 325 (381)
T PRK10342 278 LEEHIHDCT-LVITGEGRIDSQSIHGKVPIGVANVAKKYHKPVIGIAGS 325 (381)
T ss_pred HHHHhccCC-EEEECCCcCcccccCCccHHHHHHHHHHhCCCEEEEecc
Confidence 345778889 67777 63222 222 2456667787889999999954
No 247
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=36.22 E-value=76 Score=31.40 Aligned_cols=16 Identities=31% Similarity=0.528 Sum_probs=12.3
Q ss_pred hhcCCCEEEECCCCCC
Q psy17159 107 DFCKVDGIIVPGGFGK 122 (326)
Q Consensus 107 ~l~~~dglilpGG~~~ 122 (326)
.++.+|-||++||-|.
T Consensus 56 a~~~~DlVIttGGlgp 71 (413)
T TIGR00200 56 ASERADVLIFNGGLGP 71 (413)
T ss_pred HhcCCCEEEEcCCCCC
Confidence 3467999999998544
No 248
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=36.10 E-value=46 Score=26.75 Aligned_cols=36 Identities=22% Similarity=0.540 Sum_probs=26.1
Q ss_pred ceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEee
Q psy17159 45 TVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFD 85 (326)
Q Consensus 45 ~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~ 85 (326)
++|+|||||+.. | ...++|+....+++..-++.+++
T Consensus 69 ~iklAivGD~s~----~-~~S~~l~dfi~EsN~G~~~~F~~ 104 (113)
T PF13788_consen 69 RIKLAIVGDFSA----Y-ATSKSLRDFIYESNRGNHFFFVP 104 (113)
T ss_pred ceeEEEEEcccc----c-ccchhHHHHHHHhcCCCeEEEEC
Confidence 589999999974 6 66677887777766555555554
No 249
>PRK06242 flavodoxin; Provisional
Probab=35.82 E-value=1.7e+02 Score=23.78 Aligned_cols=24 Identities=13% Similarity=0.279 Sum_probs=16.7
Q ss_pred eEEEEEcccCCC-chhHHHHHHHHHHH
Q psy17159 46 VTIGLVGKYTKF-EDCYASLTRALEHA 71 (326)
Q Consensus 46 ~~I~iigdyg~~-~~~~~Si~~aL~~~ 71 (326)
||+.|+ |.+. .||-..+.+.|...
T Consensus 1 mk~~Ii--Y~S~~tGnT~~~A~~ia~~ 25 (150)
T PRK06242 1 MKALIV--YASVHHGNTEKIAKAIAEV 25 (150)
T ss_pred CcEEEE--EeCCCCCCHHHHHHHHHHh
Confidence 467777 4554 58888888888654
No 250
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=35.57 E-value=34 Score=27.75 Aligned_cols=34 Identities=24% Similarity=0.207 Sum_probs=20.7
Q ss_pred hcCCCEEEECCCCCCCCCchHHHHHHHHHHcCCC
Q psy17159 108 FCKVDGIIVPGGFGKRGLEGKIAACKWARENNKP 141 (326)
Q Consensus 108 l~~~dglilpGG~~~~~~~~~~~~i~~~~~~~~P 141 (326)
++.+|.||.+||-|.....-..++++.+....++
T Consensus 55 ~~~~dliittGG~g~g~~D~t~~~l~~~~~~~~~ 88 (135)
T smart00852 55 LERADLVITTGGTGPGPDDVTPEAVAEALGKELP 88 (135)
T ss_pred HhCCCEEEEcCCCCCCCCcCcHHHHHHHhCCcCC
Confidence 4579999999987643333445566554332344
No 251
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=35.26 E-value=87 Score=25.37 Aligned_cols=30 Identities=17% Similarity=0.057 Sum_probs=20.3
Q ss_pred hhcCCCEEEECCCCCCCCCchHHHHHHHHH
Q psy17159 107 DFCKVDGIIVPGGFGKRGLEGKIAACKWAR 136 (326)
Q Consensus 107 ~l~~~dglilpGG~~~~~~~~~~~~i~~~~ 136 (326)
.++++|.||.+||-|.....-..++++.+.
T Consensus 55 ~~~~~DlvittGG~g~g~~D~t~~ai~~~g 84 (133)
T cd00758 55 ASREADLVLTTGGTGVGRRDVTPEALAELG 84 (133)
T ss_pred HHhcCCEEEECCCCCCCCCcchHHHHHHhc
Confidence 345799999999876655445556666543
No 252
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=35.16 E-value=3.4e+02 Score=25.00 Aligned_cols=91 Identities=18% Similarity=0.095 Sum_probs=50.6
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh-cCCCEEEECCCCCCCC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF-CKVDGIIVPGGFGKRG 124 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l-~~~dglilpGG~~~~~ 124 (326)
.+|+++ -...-..-+..+.+.++..+..++....+...+... +....-..+...+ ..+|+|+|.+.-
T Consensus 34 ~~i~~~-~~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~-------d~~~Q~~~i~~~ia~~~daIiv~~~d---- 101 (322)
T COG1879 34 KTIGVV-VPTLGNPFFQAVRKGAEAAAKKLGVVVAVVIADAQN-------DVAKQIAQIEDLIAQGVDAIIINPVD---- 101 (322)
T ss_pred ceEEEE-eccCCChHHHHHHHHHHHHHHHcCCcEEEEeccccc-------ChHHHHHHHHHHHHcCCCEEEEcCCC----
Confidence 467777 332211235557888888888776422222222111 0000111122233 689999998742
Q ss_pred CchHHHHHHHHHHcCCCEEEEehh
Q psy17159 125 LEGKIAACKWARENNKPFLGICLG 148 (326)
Q Consensus 125 ~~~~~~~i~~~~~~~~PvLGIClG 148 (326)
.......++++.+.++||..+=..
T Consensus 102 ~~~~~~~v~~a~~aGIpVv~~d~~ 125 (322)
T COG1879 102 PDALTPAVKKAKAAGIPVVTVDSD 125 (322)
T ss_pred hhhhHHHHHHHHHCCCcEEEEecC
Confidence 235667888888999998776554
No 253
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=34.76 E-value=2.7e+02 Score=24.10 Aligned_cols=73 Identities=18% Similarity=0.194 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCCCCchHHHHHHHHH
Q psy17159 59 DCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKRGLEGKIAACKWAR 136 (326)
Q Consensus 59 ~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~~~~~~~~~i~~~~ 136 (326)
..+..+.+.++.+....+..+.+...+. ++....+..+.+ ..+||||+.+... ......++.+.
T Consensus 12 ~~~~~~~~~~~~~a~~~g~~~~~~~~~~----------~~~~~~~~~~~l~~~~vdgvi~~~~~~----~~~~~~~~~l~ 77 (267)
T cd01536 12 PFWQAMNKGAEAAAKELGVELIVLDAQN----------DVSKQIQQIEDLIAQGVDGIIISPVDS----AALTPALKKAN 77 (267)
T ss_pred HHHHHHHHHHHHHHHhcCceEEEECCCC----------CHHHHHHHHHHHHHcCCCEEEEeCCCc----hhHHHHHHHHH
Confidence 4566688888877766554444433321 111111112222 3799999876421 11112444555
Q ss_pred HcCCCEEEE
Q psy17159 137 ENNKPFLGI 145 (326)
Q Consensus 137 ~~~~PvLGI 145 (326)
+.++|+..+
T Consensus 78 ~~~ip~V~~ 86 (267)
T cd01536 78 AAGIPVVTV 86 (267)
T ss_pred HCCCcEEEe
Confidence 567777654
No 254
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=34.57 E-value=60 Score=31.11 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=28.3
Q ss_pred CCCEEEECC-CCCCCCC-chHHHHHHHHHHcCCCEEEE
Q psy17159 110 KVDGIIVPG-GFGKRGL-EGKIAACKWARENNKPFLGI 145 (326)
Q Consensus 110 ~~dglilpG-G~~~~~~-~~~~~~i~~~~~~~~PvLGI 145 (326)
.++||||-| |.|+-.. ..+.+.|+++.++++||.=+
T Consensus 233 ~~~GiVl~~~G~Gn~p~~~~~~~~l~~~~~~Gi~VV~~ 270 (335)
T PRK09461 233 PVKALILRSYGVGNAPQNPALLQELKEASERGIVVVNL 270 (335)
T ss_pred CCCEEEEccCCCCCCCCCHHHHHHHHHHHHCCCEEEEe
Confidence 479999999 7776432 45788899999999998765
No 255
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=34.16 E-value=92 Score=26.08 Aligned_cols=69 Identities=17% Similarity=0.213 Sum_probs=34.5
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEEC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVP 117 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilp 117 (326)
.||.+||.-|+ -..++..+|...-......=.+.+.+...-.+-.-.++|..|+.+...-.++|.|++-
T Consensus 2 krimliG~~g~---GKTTL~q~L~~~~~~~~KTq~i~~~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll 70 (143)
T PF10662_consen 2 KRIMLIGPSGS---GKTTLAQALNGEEIRYKKTQAIEYYDNTIDTPGEYIENPRFYHALIVTAQDADVVLLL 70 (143)
T ss_pred ceEEEECCCCC---CHHHHHHHHcCCCCCcCccceeEecccEEECChhheeCHHHHHHHHHHHhhCCEEEEE
Confidence 47999988775 5678888887654432211112222211101111222444444444444567766553
No 256
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=33.97 E-value=1e+02 Score=26.10 Aligned_cols=55 Identities=18% Similarity=0.190 Sum_probs=35.6
Q ss_pred EEEECCCCCCCCC---chH-HHHHHHHHHcCCCEEEEehh--------HHHHHHHhCcccccccCCc
Q psy17159 113 GIIVPGGFGKRGL---EGK-IAACKWARENNKPFLGICLG--------LQAAVIEYGRSVLGLKDAD 167 (326)
Q Consensus 113 glilpGG~~~~~~---~~~-~~~i~~~~~~~~PvLGIClG--------~QlL~~~~g~~~l~~~~~~ 167 (326)
.|+|+-|..+.+. ... .++.+.+.+.++++++|+.| |+-|+...||+.+...+..
T Consensus 102 ivliTDG~~~~g~~~~~~~~~~~~~~l~~~gi~v~~I~~~~~~~~~~~l~~iA~~tgG~~~~~~d~~ 168 (178)
T cd01451 102 IVVITDGRANVGPDPTADRALAAARKLRARGISALVIDTEGRPVRRGLAKDLARALGGQYVRLPDLS 168 (178)
T ss_pred EEEECCCCCCCCCCchhHHHHHHHHHHHhcCCcEEEEeCCCCccCccHHHHHHHHcCCeEEEcCcCC
Confidence 4566767544221 122 45567777889999999987 4666777788776555443
No 257
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=33.96 E-value=83 Score=29.93 Aligned_cols=35 Identities=26% Similarity=0.350 Sum_probs=28.5
Q ss_pred CCCEEEECC-CCCCCCCchHHHHHHHHHHcCCCEEEE
Q psy17159 110 KVDGIIVPG-GFGKRGLEGKIAACKWARENNKPFLGI 145 (326)
Q Consensus 110 ~~dglilpG-G~~~~~~~~~~~~i~~~~~~~~PvLGI 145 (326)
.++||||-| |.|+-.. .+.+.++++.++++||.=+
T Consensus 235 ~~~GlVl~~~G~Gn~p~-~~~~~l~~a~~~gipVV~~ 270 (323)
T smart00870 235 GAKGLVLEGTGAGNVPP-DLLEALKEALERGIPVVRT 270 (323)
T ss_pred CCCEEEEEeeCCCCCCH-HHHHHHHHHHHCCCEEEEe
Confidence 589999999 8776442 5788899999999998766
No 258
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=33.85 E-value=73 Score=31.15 Aligned_cols=44 Identities=20% Similarity=0.318 Sum_probs=28.8
Q ss_pred hhhhhcCCCEEEECC-CCCCC-CCc--hHHHHHHHHHHcCCCEEEEehh
Q psy17159 104 TWSDFCKVDGIIVPG-GFGKR-GLE--GKIAACKWARENNKPFLGICLG 148 (326)
Q Consensus 104 ~~~~l~~~dglilpG-G~~~~-~~~--~~~~~i~~~~~~~~PvLGIClG 148 (326)
+.+.++++| +||.| |--+. ... ....+.+.+.+.++|+..||--
T Consensus 277 l~~~l~~AD-lVITGEG~~D~Qtl~GK~p~~Va~~A~~~~vPviai~G~ 324 (375)
T TIGR00045 277 LEQKIKDAD-LVITGEGRLDRQSLMGKAPVGVAKRAKKYGVPVIAIAGS 324 (375)
T ss_pred HHHHhcCCC-EEEECCCcccccccCCchHHHHHHHHHHhCCeEEEEecc
Confidence 345778899 56666 63222 222 2455667787889999999943
No 259
>PRK03673 hypothetical protein; Provisional
Probab=33.77 E-value=98 Score=30.47 Aligned_cols=16 Identities=38% Similarity=0.565 Sum_probs=12.4
Q ss_pred hhcCCCEEEECCCCCC
Q psy17159 107 DFCKVDGIIVPGGFGK 122 (326)
Q Consensus 107 ~l~~~dglilpGG~~~ 122 (326)
.+..+|.||++||-|.
T Consensus 57 a~~~~DlVI~tGGlGp 72 (396)
T PRK03673 57 RSQHADVLIVNGGLGP 72 (396)
T ss_pred HhccCCEEEEcCCCCC
Confidence 4467999999997554
No 260
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=33.42 E-value=2.1e+02 Score=27.18 Aligned_cols=28 Identities=21% Similarity=-0.022 Sum_probs=19.9
Q ss_pred cCCCEEEECCCCCCCCCchHHHHHHHHH
Q psy17159 109 CKVDGIIVPGGFGKRGLEGKIAACKWAR 136 (326)
Q Consensus 109 ~~~dglilpGG~~~~~~~~~~~~i~~~~ 136 (326)
..+|.||.+||-|.....-..++++.+.
T Consensus 214 ~~~DlIITTGGtg~g~~D~tpeAl~~lg 241 (312)
T PRK03604 214 EGYALIITTGGTGLGPRDVTPEALAPLL 241 (312)
T ss_pred CCCCEEEECCCCCCCCCccHHHHHHHhc
Confidence 4689999999877655455566776654
No 261
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=33.24 E-value=2e+02 Score=25.04 Aligned_cols=32 Identities=22% Similarity=0.131 Sum_probs=24.7
Q ss_pred cCCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEe
Q psy17159 109 CKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 109 ~~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
..+|.||+..- .....++++|...++|+.|+|
T Consensus 126 ~~Pdlviv~~~------~~~~~ai~Ea~~l~IP~I~i~ 157 (193)
T cd01425 126 RLPDLVIVLDP------RKEHQAIREASKLGIPVIAIV 157 (193)
T ss_pred cCCCEEEEeCC------ccchHHHHHHHHcCCCEEEEe
Confidence 46888888752 123568899999999999998
No 262
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=32.91 E-value=88 Score=29.97 Aligned_cols=31 Identities=19% Similarity=0.062 Sum_probs=23.3
Q ss_pred CCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEe
Q psy17159 110 KVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 110 ~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
.+|.||+.+- .....+|++|...++|+.|||
T Consensus 152 ~Pd~viv~d~------~~e~~AI~EA~kl~IPvIaiv 182 (326)
T PRK12311 152 LPDLLFVIDT------NKEDIAIQEAQRLGIPVAAIV 182 (326)
T ss_pred CCCEEEEeCC------ccchHHHHHHHHcCCCEEEEe
Confidence 4677777642 133568899999999999998
No 263
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=32.75 E-value=89 Score=30.18 Aligned_cols=35 Identities=20% Similarity=0.329 Sum_probs=28.4
Q ss_pred CCCEEEECC-CCCCCCCchHHHHHHHHHHcCCCEEEE
Q psy17159 110 KVDGIIVPG-GFGKRGLEGKIAACKWARENNKPFLGI 145 (326)
Q Consensus 110 ~~dglilpG-G~~~~~~~~~~~~i~~~~~~~~PvLGI 145 (326)
.++||||-| |.|+-. ..+.+.++++.++++||.=+
T Consensus 262 g~~GlVl~g~G~Gn~p-~~~~~al~~a~~~GipVV~~ 297 (349)
T TIGR00520 262 GAKGIVLAGVGNGSLS-AAGLKVNETAAKLGVPIVRS 297 (349)
T ss_pred CCCEEEEEeECCCCCC-HHHHHHHHHHHHCCCEEEEE
Confidence 489999998 877644 25788899999999998866
No 264
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=32.73 E-value=73 Score=29.37 Aligned_cols=38 Identities=26% Similarity=0.321 Sum_probs=24.2
Q ss_pred cCCCEEEECCC-CCCCCCchHHHHHHHHHHcCCCEEEEehhH
Q psy17159 109 CKVDGIIVPGG-FGKRGLEGKIAACKWARENNKPFLGICLGL 149 (326)
Q Consensus 109 ~~~dglilpGG-~~~~~~~~~~~~i~~~~~~~~PvLGIClG~ 149 (326)
..+||||++|. .|.+.....+..+++.. .+|+| +.-|.
T Consensus 171 ~~aDaviVtG~~TG~~~~~~~l~~vr~~~--~~PVl-vGSGv 209 (254)
T PF03437_consen 171 GGADAVIVTGKATGEPPDPEKLKRVREAV--PVPVL-VGSGV 209 (254)
T ss_pred cCCCEEEECCcccCCCCCHHHHHHHHhcC--CCCEE-EecCC
Confidence 36899999994 45554444455555543 38988 55444
No 265
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=32.31 E-value=3.1e+02 Score=23.50 Aligned_cols=83 Identities=19% Similarity=0.196 Sum_probs=41.8
Q ss_pred EEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhh-hh-cCCCEEEECCCCCCCC
Q psy17159 47 TIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWS-DF-CKVDGIIVPGGFGKRG 124 (326)
Q Consensus 47 ~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~-~l-~~~dglilpGG~~~~~ 124 (326)
||+++-... ....+.++.+.++.+....+.. +.+.+... +++...+..+ .+ ..+|++|+.+....
T Consensus 1 ~ig~v~~~~-~~~~~~~~~~g~~~~~~~~g~~--l~~~~~~~--------~~~~~~~~~~~~~~~~~d~ii~~~~~~~-- 67 (264)
T cd01537 1 TIGVLVPDL-DNPFFAQVLKGIEEAAKAAGYQ--VLLANSQN--------DAEKQLSALENLIARGVDGIIIAPSDLT-- 67 (264)
T ss_pred CeEEEEcCC-CChHHHHHHHHHHHHHHHcCCe--EEEEeCCC--------CHHHHHHHHHHHHHcCCCEEEEecCCCc--
Confidence 366662221 1245667777777777665544 33443211 1111011111 22 37999999764321
Q ss_pred CchHHHHHHHHHHcCCCEEEE
Q psy17159 125 LEGKIAACKWARENNKPFLGI 145 (326)
Q Consensus 125 ~~~~~~~i~~~~~~~~PvLGI 145 (326)
... .++.+.+.++|++.+
T Consensus 68 --~~~-~~~~l~~~~ip~v~~ 85 (264)
T cd01537 68 --APT-IVKLARKAGIPVVLV 85 (264)
T ss_pred --chh-HHHHhhhcCCCEEEe
Confidence 111 345555678898765
No 266
>PRK09932 glycerate kinase II; Provisional
Probab=32.17 E-value=81 Score=30.90 Aligned_cols=44 Identities=18% Similarity=0.226 Sum_probs=28.7
Q ss_pred hhhhhcCCCEEEECC-CCCCC-CCch--HHHHHHHHHHcCCCEEEEehh
Q psy17159 104 TWSDFCKVDGIIVPG-GFGKR-GLEG--KIAACKWARENNKPFLGICLG 148 (326)
Q Consensus 104 ~~~~l~~~dglilpG-G~~~~-~~~~--~~~~i~~~~~~~~PvLGIClG 148 (326)
+.+.++++| +||.| |--+. ...+ ...+.+.+.+.++|+..||--
T Consensus 278 l~~~l~~AD-lVITGEG~~D~Qt~~GK~p~~Va~~A~~~~~Pvi~i~G~ 325 (381)
T PRK09932 278 LEQAVQGAA-LVITGEGRIDSQTAGGKAPLGVASVAKQFNVPVIGIAGV 325 (381)
T ss_pred hHHHhccCC-EEEECCCcccccccCCccHHHHHHHHHHcCCCEEEEecc
Confidence 345778899 56666 63222 2222 455667777889999999954
No 267
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=32.13 E-value=3.5e+02 Score=23.71 Aligned_cols=72 Identities=19% Similarity=0.260 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhh-h-cCCCEEEECCCCCCCCCchHHHHHHHHHH
Q psy17159 60 CYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSD-F-CKVDGIIVPGGFGKRGLEGKIAACKWARE 137 (326)
Q Consensus 60 ~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~-l-~~~dglilpGG~~~~~~~~~~~~i~~~~~ 137 (326)
-+.++.+.++.+....+..+.+..... ++.+-.+..+. + ..+||||+.+.. . ......++.+.+
T Consensus 13 ~~~~~~~~i~~~~~~~g~~~~i~~~~~----------~~~~~~~~~~~~~~~~vdgiii~~~~-~---~~~~~~~~~~~~ 78 (267)
T cd06322 13 FYIELANAMKEEAKKQKVNLIVSIANQ----------DLNKQLSDVEDFITKKVDAIVLSPVD-S---KGIRAAIAKAKK 78 (267)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEecCCC----------CHHHHHHHHHHHHHcCCCEEEEcCCC-h---hhhHHHHHHHHH
Confidence 456688888887776655444332211 11111111122 2 479999997531 1 112234566666
Q ss_pred cCCCEEEE
Q psy17159 138 NNKPFLGI 145 (326)
Q Consensus 138 ~~~PvLGI 145 (326)
.++|+.-+
T Consensus 79 ~~ipvV~~ 86 (267)
T cd06322 79 AGIPVITV 86 (267)
T ss_pred CCCCEEEE
Confidence 78888765
No 268
>PRK09004 FMN-binding protein MioC; Provisional
Probab=32.03 E-value=1.3e+02 Score=24.99 Aligned_cols=33 Identities=9% Similarity=-0.056 Sum_probs=25.1
Q ss_pred EEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEE
Q psy17159 47 TIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQL 81 (326)
Q Consensus 47 ~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~ 81 (326)
+|.|+ |++-.||=..+.+.|.....+.+..+.+
T Consensus 3 ~i~I~--ygS~tGnae~~A~~l~~~~~~~g~~~~~ 35 (146)
T PRK09004 3 DITLI--SGSTLGGAEYVADHLAEKLEEAGFSTET 35 (146)
T ss_pred eEEEE--EEcCchHHHHHHHHHHHHHHHcCCceEE
Confidence 67777 8888899999998888776655555554
No 269
>TIGR01819 F420_cofD LPPG:FO 2-phospho-L-lactate transferase. This model represents LPPG:Fo 2-phospho-L-lactate transferase, which catalyses the fourth step in the biosynthesis of coenzyme F420, a flavin derivative found in methanogens, the Mycobacteria, and several other lineages. This enzyme is characterized so far in Methanococcus jannaschii but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. The clade represented by this model is one of two major divisions of proteins in pfam model pfam01933.
Probab=31.72 E-value=43 Score=31.64 Aligned_cols=44 Identities=14% Similarity=0.114 Sum_probs=28.0
Q ss_pred cchhhhhcCCCEEEECCCCCCCCC--chHHHHHHHHHHcCCCEEEEe
Q psy17159 102 HKTWSDFCKVDGIIVPGGFGKRGL--EGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 102 ~~~~~~l~~~dglilpGG~~~~~~--~~~~~~i~~~~~~~~PvLGIC 146 (326)
.++.+.+.++|.|||++|.-.... .-.+.-|++++.+ .|+.+||
T Consensus 174 peal~AI~~AD~IIlGPgsp~TSI~P~LlVpgIreAL~~-a~vV~Vs 219 (297)
T TIGR01819 174 PKVLEAIRKEDNILIGPSNPITSIGPILSLPGIREALRD-KKVVAVS 219 (297)
T ss_pred HHHHHHHHhCCEEEECCCccHHHhhhhcCchhHHHHHHc-CCEEEEc
Confidence 345667889999999876422211 1123445555555 8999999
No 270
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=31.65 E-value=3.7e+02 Score=24.54 Aligned_cols=73 Identities=14% Similarity=0.162 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhh-h-cCCCEEEECCCCCCCCCchHHHHHHHHHHc
Q psy17159 61 YASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSD-F-CKVDGIIVPGGFGKRGLEGKIAACKWAREN 138 (326)
Q Consensus 61 ~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~-l-~~~dglilpGG~~~~~~~~~~~~i~~~~~~ 138 (326)
+..+.+.|..+....+..+.+...+... +++.-.+..+. + ..+||||+.+... ......++.+.+.
T Consensus 14 ~~~~~~gi~~~a~~~~~g~~~~~~~~~~--------~~~~q~~~i~~l~~~~vdgiii~~~~~----~~~~~~~~~~~~~ 81 (303)
T cd01539 14 ISLVRKNLEDIQKENGGKVEFTFYDAKN--------NQSTQNEQIDTALAKGVDLLAVNLVDP----TAAQTVINKAKQK 81 (303)
T ss_pred HHHHHHHHHHHHHhhCCCeeEEEecCCC--------CHHHHHHHHHHHHHcCCCEEEEecCch----hhHHHHHHHHHHC
Confidence 5557778888777633344444444311 11110011222 2 4899999975321 1223566777777
Q ss_pred CCCEEEE
Q psy17159 139 NKPFLGI 145 (326)
Q Consensus 139 ~~PvLGI 145 (326)
++|+.-+
T Consensus 82 giPvV~~ 88 (303)
T cd01539 82 NIPVIFF 88 (303)
T ss_pred CCCEEEe
Confidence 9998755
No 271
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=31.47 E-value=2.7e+02 Score=26.20 Aligned_cols=96 Identities=16% Similarity=0.113 Sum_probs=53.2
Q ss_pred HHHHHHhhcCCCCCCCeeeCCCCCcccccch----------hhhhcCCCceEEEEEcccCCCchhHHHHHHHHHHHhhhc
Q psy17159 6 SVRAKISMFCHVTPENVIFNPDVKPIYKVRM----------LRIDRLNKTVTIGLVGKYTKFEDCYASLTRALEHASYHS 75 (326)
Q Consensus 6 ~~~~ki~~~~~~~~~~v~~~~~~~~~y~~p~----------~~~~~~~~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~ 75 (326)
...+.+|..+++| |||.-|. -+.|. .++.. -+++||+++||.+ ..-+|...++...|+
T Consensus 110 ~~~~~~a~~~~vP---VINag~~---~~HPtQaL~Dl~Ti~e~~g~-l~gl~i~~vGd~~---~v~~Sl~~~l~~~g~-- 177 (304)
T PRK00779 110 ETLEELAEYSTVP---VINGLTD---LSHPCQILADLLTIYEHRGS-LKGLKVAWVGDGN---NVANSLLLAAALLGF-- 177 (304)
T ss_pred hHHHHHHHhCCCC---EEeCCCC---CCChHHHHHHHHHHHHHhCC-cCCcEEEEEeCCC---ccHHHHHHHHHHcCC--
Confidence 4566677788885 7887652 26675 22222 3458999999943 356677766666554
Q ss_pred CCceEEEEeecccccCCC-C-------C-CCchhhcchhhhhcCCCEEEEC
Q psy17159 76 NRHLQLKYFDSELLSMDP-K-------T-GNMAEYHKTWSDFCKVDGIIVP 117 (326)
Q Consensus 76 ~~~v~~~~i~~~~l~~~~-~-------~-~~~~~~~~~~~~l~~~dglilp 117 (326)
++..+.+..+.... + . ..-..+++..+.++++|.|...
T Consensus 178 ----~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~ 224 (304)
T PRK00779 178 ----DLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTD 224 (304)
T ss_pred ----EEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence 33444444433210 0 0 0011123345567888888775
No 272
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=31.39 E-value=59 Score=30.07 Aligned_cols=87 Identities=17% Similarity=0.053 Sum_probs=41.4
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh-cCCCEEEECCCCCCCC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF-CKVDGIIVPGGFGKRG 124 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l-~~~dglilpGG~~~~~ 124 (326)
.+|+++-+-. ..+.....+.+++.....+.++....+++.. + .+...+.+ ...|+++++......
T Consensus 132 k~igvl~~~~--~~~~~~~~~~~~~~a~~~g~~l~~~~v~~~~--~---------~~~~~~~l~~~~da~~~~~~~~~~- 197 (294)
T PF04392_consen 132 KRIGVLYDPS--EPNSVAQIEQLRKAAKKLGIELVEIPVPSSE--D---------LEQALEALAEKVDALYLLPDNLVD- 197 (294)
T ss_dssp -EEEEEEETT---HHHHHHHHHHHHHHHHTT-EEEEEEESSGG--G---------HHHHHHHHCTT-SEEEE-S-HHHH-
T ss_pred CEEEEEecCC--CccHHHHHHHHHHHHHHcCCEEEEEecCcHh--H---------HHHHHHHhhccCCEEEEECCcchH-
Confidence 5788873322 1233445667777666666665555554311 1 11122233 578999997642111
Q ss_pred CchHHHHHHHHHHcCCCEEEEeh
Q psy17159 125 LEGKIAACKWARENNKPFLGICL 147 (326)
Q Consensus 125 ~~~~~~~i~~~~~~~~PvLGICl 147 (326)
.....++..+.+.++|++|..-
T Consensus 198 -~~~~~i~~~~~~~~iPv~~~~~ 219 (294)
T PF04392_consen 198 -SNFEAILQLANEAKIPVFGSSD 219 (294)
T ss_dssp -HTHHHHHHHCCCTT--EEESSH
T ss_pred -hHHHHHHHHHHhcCCCEEECCH
Confidence 1222244555567899999753
No 273
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=31.18 E-value=5e+02 Score=25.17 Aligned_cols=45 Identities=18% Similarity=0.122 Sum_probs=28.7
Q ss_pred hhhhhcCCCEEEECCCCCCC-CCchHHHHHHHHHHcCCCEEEEehh
Q psy17159 104 TWSDFCKVDGIIVPGGFGKR-GLEGKIAACKWARENNKPFLGICLG 148 (326)
Q Consensus 104 ~~~~l~~~dglilpGG~~~~-~~~~~~~~i~~~~~~~~PvLGIClG 148 (326)
..+.+..+|.+|+|.=.+.. ..++.-..+-++...++||++.-.|
T Consensus 292 l~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~ 337 (406)
T PRK15427 292 VKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS 337 (406)
T ss_pred HHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC
Confidence 45567788888887522111 2245445566777889999987443
No 274
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=31.05 E-value=2.9e+02 Score=24.29 Aligned_cols=72 Identities=19% Similarity=0.127 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHhhh-cCCceEEEEeecccccCCCCCCCchhhcchhh-hh-cCCCEEEECCCCCCCCCchHHHHHHHHH
Q psy17159 60 CYASLTRALEHASYH-SNRHLQLKYFDSELLSMDPKTGNMAEYHKTWS-DF-CKVDGIIVPGGFGKRGLEGKIAACKWAR 136 (326)
Q Consensus 60 ~~~Si~~aL~~~g~~-~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~-~l-~~~dglilpGG~~~~~~~~~~~~i~~~~ 136 (326)
-+..+...+.++... .+..+. ..++.. ++..-.+..+ .+ ..+||+|+.+... ......++.+.
T Consensus 13 ~~~~~~~gi~~~~~~~~~~~~~--~~~~~~--------~~~~~~~~i~~l~~~~vdgiii~~~~~----~~~~~~~~~l~ 78 (272)
T cd06301 13 FLTLLRNAMKEHAKVLGGVELQ--FEDAKN--------DVATQLSQVENFIAQGVDAIIVVPVDT----AATAPIVKAAN 78 (272)
T ss_pred HHHHHHHHHHHHHHHcCCcEEE--EeCCCC--------CHHHHHHHHHHHHHcCCCEEEEecCch----hhhHHHHHHHH
Confidence 455677788887766 443333 333210 1111001111 12 3789999976321 11234556666
Q ss_pred HcCCCEEEE
Q psy17159 137 ENNKPFLGI 145 (326)
Q Consensus 137 ~~~~PvLGI 145 (326)
+.++|+..+
T Consensus 79 ~~~iPvv~~ 87 (272)
T cd06301 79 AAGIPLVYV 87 (272)
T ss_pred HCCCeEEEe
Confidence 778898754
No 275
>PRK09701 D-allose transporter subunit; Provisional
Probab=30.78 E-value=4e+02 Score=24.45 Aligned_cols=86 Identities=12% Similarity=0.132 Sum_probs=43.3
Q ss_pred EEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCCC
Q psy17159 47 TIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKRG 124 (326)
Q Consensus 47 ~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~~ 124 (326)
.|+++-..-. ..-+.++.+.+.+.....+..+.+...+.. .+.....+..+.+ ..+|||||.+...
T Consensus 26 ~Igvi~~~~~-~~f~~~~~~gi~~~a~~~g~~v~~~~~~~~--------~~~~~~~~~i~~l~~~~vDgiIi~~~~~--- 93 (311)
T PRK09701 26 EYAVVLKTLS-NPFWVDMKKGIEDEAKTLGVSVDIFASPSE--------GDFQSQLQLFEDLSNKNYKGIAFAPLSS--- 93 (311)
T ss_pred eEEEEeCCCC-CHHHHHHHHHHHHHHHHcCCeEEEecCCCC--------CCHHHHHHHHHHHHHcCCCEEEEeCCCh---
Confidence 6888732111 133666888888877666544443321211 0111000111122 3699999986421
Q ss_pred CchHHHHHHHHHHcCCCEEEE
Q psy17159 125 LEGKIAACKWARENNKPFLGI 145 (326)
Q Consensus 125 ~~~~~~~i~~~~~~~~PvLGI 145 (326)
......+..+.+.++|+.-+
T Consensus 94 -~~~~~~l~~~~~~giPvV~~ 113 (311)
T PRK09701 94 -VNLVMPVARAWKKGIYLVNL 113 (311)
T ss_pred -HHHHHHHHHHHHCCCcEEEe
Confidence 11123355556778998755
No 276
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=30.64 E-value=64 Score=26.65 Aligned_cols=28 Identities=18% Similarity=0.124 Sum_probs=18.5
Q ss_pred hcCCCEEEECCCCCCCCCchHHHHHHHH
Q psy17159 108 FCKVDGIIVPGGFGKRGLEGKIAACKWA 135 (326)
Q Consensus 108 l~~~dglilpGG~~~~~~~~~~~~i~~~ 135 (326)
++.+|.||.+||-|........++++.+
T Consensus 64 ~~~~DliIttGG~g~g~~D~t~~ai~~~ 91 (144)
T TIGR00177 64 VDEADVVLTTGGTGVGPRDVTPEALEEL 91 (144)
T ss_pred HhCCCEEEECCCCCCCCCccHHHHHHHh
Confidence 4579999999987654444444555543
No 277
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=30.51 E-value=3.1e+02 Score=25.87 Aligned_cols=100 Identities=12% Similarity=0.050 Sum_probs=50.6
Q ss_pred HHHHHHHhhcCCCCCCCeeeCCCCCcccccch----------hhhhcCCCceEEEEEcccCCCchhHHHHHHHHHHHhhh
Q psy17159 5 ESVRAKISMFCHVTPENVIFNPDVKPIYKVRM----------LRIDRLNKTVTIGLVGKYTKFEDCYASLTRALEHASYH 74 (326)
Q Consensus 5 ~~~~~ki~~~~~~~~~~v~~~~~~~~~y~~p~----------~~~~~~~~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~ 74 (326)
....+.+|.++.|| |||.-|. -.+-|. ..+.. -+++||+++||..- ...-+|...++...|.
T Consensus 112 ~~~~~~~a~~~~vP---VINa~~g--~~~HPtQ~LaDl~Ti~e~~G~-l~g~kv~~vGD~~~-~~v~~Sl~~~~~~~g~- 183 (305)
T PRK00856 112 SGAARLLAESSDVP---VINAGDG--SHQHPTQALLDLLTIREEFGR-LEGLKVAIVGDIKH-SRVARSNIQALTRLGA- 183 (305)
T ss_pred hHHHHHHHHHCCCC---EEECCCC--CCCCcHHHHHHHHHHHHHhCC-CCCCEEEEECCCCC-CcHHHHHHHHHHHcCC-
Confidence 35567778888884 6666542 123443 22222 34589999988520 0234555555544443
Q ss_pred cCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECC
Q psy17159 75 SNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPG 118 (326)
Q Consensus 75 ~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpG 118 (326)
+ +..+.+..+.+..+. .-..+++..+.++++|.|....
T Consensus 184 ---~--~~~~~P~~~~~~~~~-~~~~~~d~~ea~~~aDvvyt~~ 221 (305)
T PRK00856 184 ---E--VRLIAPPTLLPEGMP-EYGVHTDLDEVIEDADVVMMLR 221 (305)
T ss_pred ---E--EEEECCcccCccccc-ceEEECCHHHHhCCCCEEEECC
Confidence 3 333443333221110 0112333456778999776644
No 278
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=30.51 E-value=3.6e+02 Score=23.41 Aligned_cols=72 Identities=14% Similarity=0.172 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCCCCchHHHHHHHHHH
Q psy17159 60 CYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKRGLEGKIAACKWARE 137 (326)
Q Consensus 60 ~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~~~~~~~~~i~~~~~ 137 (326)
-+.++.+.+.++....+..+.+...+.+ +..-.+..+.+ ..+||||+.++... . ...++.+.+
T Consensus 13 ~~~~~~~~i~~~~~~~g~~~~~~~~~~~----------~~~~~~~~~~l~~~~vdgiii~~~~~~-~----~~~~~~~~~ 77 (266)
T cd06282 13 VFAECVQGIQEEARAAGYSLLLATTDYD----------AEREADAVETLLRQRVDGLILTVADAA-T----SPALDLLDA 77 (266)
T ss_pred hHHHHHHHHHHHHHHCCCEEEEeeCCCC----------HHHHHHHHHHHHhcCCCEEEEecCCCC-c----hHHHHHHhh
Confidence 3566777777777666555554433211 11111112223 47999999764321 1 124556667
Q ss_pred cCCCEEEEe
Q psy17159 138 NNKPFLGIC 146 (326)
Q Consensus 138 ~~~PvLGIC 146 (326)
.++|++.+.
T Consensus 78 ~~ipvV~~~ 86 (266)
T cd06282 78 ERVPYVLAY 86 (266)
T ss_pred CCCCEEEEe
Confidence 789987664
No 279
>KOG0402|consensus
Probab=30.15 E-value=62 Score=24.50 Aligned_cols=17 Identities=35% Similarity=0.604 Sum_probs=13.1
Q ss_pred CceEEEEEcccCCCchh
Q psy17159 44 KTVTIGLVGKYTKFEDC 60 (326)
Q Consensus 44 ~~~~I~iigdyg~~~~~ 60 (326)
.+.||+|+|+||...|+
T Consensus 4 rtKKVgI~gkyGtrYGa 20 (92)
T KOG0402|consen 4 RTKKVGIVGKYGTRYGA 20 (92)
T ss_pred ccceeeeeecccchhhH
Confidence 45799999999975543
No 280
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=30.09 E-value=99 Score=31.18 Aligned_cols=61 Identities=8% Similarity=0.161 Sum_probs=36.5
Q ss_pred CceEEEEEcccCCCchhHHHHHHHHHHHhhhc--CCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECC
Q psy17159 44 KTVTIGLVGKYTKFEDCYASLTRALEHASYHS--NRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPG 118 (326)
Q Consensus 44 ~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~--~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpG 118 (326)
.+.||.|+ |.+..||-..+.+++.+...+. +.+|.+..+...... ++...+.++|+|||.-
T Consensus 250 ~~~kv~Iv--Y~S~~GnTe~mA~~ia~gl~~~g~gv~v~~~~v~~~~~~------------~i~~~~~~ad~vilGs 312 (479)
T PRK05452 250 QEDRITIF--YDTMSNNTRMMADAIAQGIAEVDPRVAVKIFNVARSDKN------------EILTNVFRSKGVLVGS 312 (479)
T ss_pred CcCcEEEE--EECCccHHHHHHHHHHHHHHhhCCCceEEEEECCCCCHH------------HHHhHHhhCCEEEEEC
Confidence 34578877 7677789888888888755443 344555544422111 1122344799998854
No 281
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=29.99 E-value=56 Score=31.26 Aligned_cols=41 Identities=20% Similarity=0.226 Sum_probs=28.3
Q ss_pred chhhhhcCCCEEEECCCCCCCC------CchHHHHHHHHHHcCCCEEEEe
Q psy17159 103 KTWSDFCKVDGIIVPGGFGKRG------LEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 103 ~~~~~l~~~dglilpGG~~~~~------~~~~~~~i~~~~~~~~PvLGIC 146 (326)
++.+.+.++|.|||.+|.=... ..++.++|++ ..-|+.+||
T Consensus 182 eaveAI~~AD~IviGPgSl~TSIlP~Lllp~I~eaLr~---~~ap~i~v~ 228 (323)
T COG0391 182 EAVEAIKEADLIVIGPGSLFTSILPILLLPGIAEALRE---TVAPIVYVC 228 (323)
T ss_pred HHHHHHHhCCEEEEcCCccHhhhchhhchhHHHHHHHh---CCCCEEEec
Confidence 4567788999999987742221 2345555554 678999999
No 282
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=29.98 E-value=3.2e+02 Score=24.84 Aligned_cols=74 Identities=15% Similarity=0.037 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCCCCchHHHHHHHHH
Q psy17159 59 DCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKRGLEGKIAACKWAR 136 (326)
Q Consensus 59 ~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~~~~~~~~~i~~~~ 136 (326)
.-+..+.+.++....+.+..+.+.. ... . ++..-.+..+.+ ..+||||+.+.. .......++.+.
T Consensus 12 ~f~~~i~~gi~~~a~~~g~~v~~~~-~~~-~-------d~~~~~~~i~~~~~~~~DgiIi~~~~----~~~~~~~~~~~~ 78 (298)
T cd06302 12 PYFNRMEEGAKEAAKELGVDAIYVG-PTT-A-------DAAGQVQIIEDLIAQGVDAIAVVPND----PDALEPVLKKAR 78 (298)
T ss_pred hHHHHHHHHHHHHHHHhCCeEEEEC-CCC-C-------CHHHHHHHHHHHHhcCCCEEEEecCC----HHHHHHHHHHHH
Confidence 3466688888887776554433221 111 0 111111112222 379999997531 122234566666
Q ss_pred HcCCCEEEE
Q psy17159 137 ENNKPFLGI 145 (326)
Q Consensus 137 ~~~~PvLGI 145 (326)
+.++|+.-+
T Consensus 79 ~~~iPvV~v 87 (298)
T cd06302 79 EAGIKVVTH 87 (298)
T ss_pred HCCCeEEEE
Confidence 678886543
No 283
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=29.93 E-value=2.8e+02 Score=24.23 Aligned_cols=69 Identities=20% Similarity=0.176 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCCCCchHHHHHHHHHH
Q psy17159 60 CYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKRGLEGKIAACKWARE 137 (326)
Q Consensus 60 ~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~~~~~~~~~i~~~~~ 137 (326)
-+.++.+.+.++..+.+..+.+..... ++..-.+..+.+ ..+||||+.+.... ...++.+.+
T Consensus 13 ~~~~~~~gi~~~~~~~g~~~~~~~~~~----------~~~~~~~~~~~l~~~~vdgiIi~~~~~~------~~~~~~l~~ 76 (265)
T cd06299 13 YFASLATAIQDAASAAGYSTIIGNSDE----------NPETENRYLDNLLSQRVDGIIVVPHEQS------AEQLEDLLK 76 (265)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEeCCC----------CHHHHHHHHHHHHhcCCCEEEEcCCCCC------hHHHHHHHh
Confidence 466788888887776655444332211 111000111222 37899999875321 123566667
Q ss_pred cCCCEEE
Q psy17159 138 NNKPFLG 144 (326)
Q Consensus 138 ~~~PvLG 144 (326)
.++|+.-
T Consensus 77 ~~ipvV~ 83 (265)
T cd06299 77 RGIPVVF 83 (265)
T ss_pred CCCCEEE
Confidence 7888743
No 284
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=29.69 E-value=3.4e+02 Score=23.75 Aligned_cols=70 Identities=17% Similarity=0.296 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCCCCchHHHHHHHHHH
Q psy17159 60 CYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKRGLEGKIAACKWARE 137 (326)
Q Consensus 60 ~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~~~~~~~~~i~~~~~ 137 (326)
.+..+...+.+...+.+..+.+.+.+.. +..-.+..+.+ ..+||||+.+..... . .++.+.+
T Consensus 13 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~----------~~~~~~~i~~l~~~~vdgiii~~~~~~~---~---~~~~~~~ 76 (264)
T cd06274 13 SFARIAKRLEALARERGYQLLIACSDDD----------PETERETVETLIARQVDALIVAGSLPPD---D---PYYLCQK 76 (264)
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEeCCCC----------HHHHHHHHHHHHHcCCCEEEEcCCCCch---H---HHHHHHh
Confidence 4566777777766665555554433211 11000111222 479999998753211 1 1445556
Q ss_pred cCCCEEEE
Q psy17159 138 NNKPFLGI 145 (326)
Q Consensus 138 ~~~PvLGI 145 (326)
.++|+.-+
T Consensus 77 ~~ipvV~~ 84 (264)
T cd06274 77 AGLPVVAL 84 (264)
T ss_pred cCCCEEEe
Confidence 78887655
No 285
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=29.64 E-value=2.2e+02 Score=24.52 Aligned_cols=86 Identities=10% Similarity=0.111 Sum_probs=43.7
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCC-
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRG- 124 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~- 124 (326)
||+.|+ |+.-.|+-..+..-|..--.+.|..|++.-.... .+ -.+.++|+|||.-.--...
T Consensus 1 Mk~LIl--Ystr~GqT~kIA~~iA~~L~e~g~qvdi~dl~~~--~~--------------~~l~~ydavVIgAsI~~~h~ 62 (175)
T COG4635 1 MKTLIL--YSTRDGQTRKIAEYIASHLRESGIQVDIQDLHAV--EE--------------PALEDYDAVVIGASIRYGHF 62 (175)
T ss_pred CceEEE--EecCCCcHHHHHHHHHHHhhhcCCeeeeeehhhh--hc--------------cChhhCceEEEecchhhhhh
Confidence 356665 5555566666655544333333334444333211 00 1578999999975421111
Q ss_pred CchHHHHHHHHHH--cCCCEEEEehhH
Q psy17159 125 LEGKIAACKWARE--NNKPFLGICLGL 149 (326)
Q Consensus 125 ~~~~~~~i~~~~~--~~~PvLGIClG~ 149 (326)
.+..-..++...+ +++|.--+|.+.
T Consensus 63 ~~~~~~Fv~k~~e~L~~kP~A~f~vnl 89 (175)
T COG4635 63 HEAVQSFVKKHAEALSTKPSAFFSVNL 89 (175)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEeeh
Confidence 1223334433222 479988888654
No 286
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=29.54 E-value=1.4e+02 Score=25.42 Aligned_cols=74 Identities=12% Similarity=0.008 Sum_probs=46.1
Q ss_pred cCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCC-CchHHHHH
Q psy17159 54 YTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRG-LEGKIAAC 132 (326)
Q Consensus 54 yg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~-~~~~~~~i 132 (326)
|.+..||-..+.+++...... ..+..+.. ....+.++|-|+|..+-.... .....+.|
T Consensus 4 YsS~TGNTkkvA~aI~~~l~~----~~~~~~~~-----------------~~~~~~~yD~i~lG~w~d~G~~d~~~~~fl 62 (160)
T PF12641_consen 4 YSSRTGNTKKVAEAIAEALGA----KDIVSVEE-----------------PPEDLEDYDLIFLGFWIDKGTPDKDMKEFL 62 (160)
T ss_pred EECCCChHHHHHHHHHHHCCC----ceeEeccc-----------------cccCCCCCCEEEEEcCccCCCCCHHHHHHH
Confidence 667789999999999876542 12333331 111367899999987632211 23455666
Q ss_pred HHHHHcCCCEEEEehh
Q psy17159 133 KWARENNKPFLGICLG 148 (326)
Q Consensus 133 ~~~~~~~~PvLGIClG 148 (326)
+.....++-+||+|.+
T Consensus 63 ~~l~~KkV~lF~T~G~ 78 (160)
T PF12641_consen 63 KKLKGKKVALFGTAGA 78 (160)
T ss_pred HHccCCeEEEEEecCC
Confidence 6655556778888844
No 287
>PRK03670 competence damage-inducible protein A; Provisional
Probab=29.40 E-value=1.2e+02 Score=27.96 Aligned_cols=25 Identities=20% Similarity=0.326 Sum_probs=15.0
Q ss_pred CCCEEEECCCCCCCCCchHHHHHHH
Q psy17159 110 KVDGIIVPGGFGKRGLEGKIAACKW 134 (326)
Q Consensus 110 ~~dglilpGG~~~~~~~~~~~~i~~ 134 (326)
.+|.||++||-|.....-..+++..
T Consensus 60 ~~DlVIttGGlGpt~dD~T~eava~ 84 (252)
T PRK03670 60 KPEVLVISGGLGPTHDDVTMLAVAE 84 (252)
T ss_pred CCCEEEECCCccCCCCCchHHHHHH
Confidence 4799999998655433233344433
No 288
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=29.30 E-value=3.7e+02 Score=23.08 Aligned_cols=50 Identities=18% Similarity=0.165 Sum_probs=26.9
Q ss_pred chhhcchhhhhcCCCEEEECCCC---CCCC-CchHHHHHHHHHHcCCCEEEEeh
Q psy17159 98 MAEYHKTWSDFCKVDGIIVPGGF---GKRG-LEGKIAACKWARENNKPFLGICL 147 (326)
Q Consensus 98 ~~~~~~~~~~l~~~dglilpGG~---~~~~-~~~~~~~i~~~~~~~~PvLGICl 147 (326)
|....+..+.+..+||+|+.=-. +.++ .++.++++-.-.=.++|++-+|.
T Consensus 55 p~~v~~~~~~i~~aD~li~~tPeYn~s~pg~lKnaiD~l~~~~~~~Kpv~~~~~ 108 (184)
T COG0431 55 PPAVQALREAIAAADGLIIATPEYNGSYPGALKNAIDWLSREALGGKPVLLLGT 108 (184)
T ss_pred CHHHHHHHHHHHhCCEEEEECCccCCCCCHHHHHHHHhCCHhHhCCCcEEEEec
Confidence 33344566677899999886422 2222 23344444222124799665554
No 289
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=29.09 E-value=3.9e+02 Score=23.49 Aligned_cols=73 Identities=12% Similarity=0.113 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhh-h-cCCCEEEECCCCCCCCCchHHHHHHHHH
Q psy17159 59 DCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSD-F-CKVDGIIVPGGFGKRGLEGKIAACKWAR 136 (326)
Q Consensus 59 ~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~-l-~~~dglilpGG~~~~~~~~~~~~i~~~~ 136 (326)
.-+.++.+.++......+..+. ..+... ++..-.+..+. + ..+||||+.+... + .....++.+.
T Consensus 12 ~~~~~~~~~i~~~~~~~g~~~~--~~~~~~--------~~~~~~~~i~~~~~~~~dgiii~~~~~-~---~~~~~l~~~~ 77 (277)
T cd06319 12 PFWQIMGRGVKSKAKALGYDAV--ELSAEN--------SAKKELENLRTAIDKGVSGIIISPTNS-S---AAVTLLKLAA 77 (277)
T ss_pred hHHHHHHHHHHHHHHhcCCeEE--EecCCC--------CHHHHHHHHHHHHhcCCCEEEEcCCch-h---hhHHHHHHHH
Confidence 3466678888877776654443 333211 11100011112 2 5899999875321 1 1223455566
Q ss_pred HcCCCEEEE
Q psy17159 137 ENNKPFLGI 145 (326)
Q Consensus 137 ~~~~PvLGI 145 (326)
+.++|+.-+
T Consensus 78 ~~~ipvV~~ 86 (277)
T cd06319 78 QAKIPVVIA 86 (277)
T ss_pred HCCCCEEEE
Confidence 678888644
No 290
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=28.58 E-value=3.5e+02 Score=27.04 Aligned_cols=92 Identities=14% Similarity=0.154 Sum_probs=46.5
Q ss_pred ceEEEEEcccCCCch-hHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCC
Q psy17159 45 TVTIGLVGKYTKFED-CYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKR 123 (326)
Q Consensus 45 ~~~I~iigdyg~~~~-~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~ 123 (326)
..+|||| .+..| ..+.|+.-+.+.... ++++..+. .+..........+.=+....+.++|.||+.=|-|+-
T Consensus 135 p~~IGVI---TS~tgAairDIl~~~~rR~P~----~~viv~pt-~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSi 206 (440)
T COG1570 135 PKKIGVI---TSPTGAALRDILHTLSRRFPS----VEVIVYPT-LVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGSI 206 (440)
T ss_pred CCeEEEE---cCCchHHHHHHHHHHHhhCCC----CeEEEEec-cccCCCcHHHHHHHHHHhhccCCCCEEEEecCcchH
Confidence 3589999 22223 477778777777653 34444442 111111000000000011233469999998766653
Q ss_pred C---CchHHHHHHHHHHcCCCEEE
Q psy17159 124 G---LEGKIAACKWARENNKPFLG 144 (326)
Q Consensus 124 ~---~~~~~~~i~~~~~~~~PvLG 144 (326)
. .-+.-.+.+...+..+||.-
T Consensus 207 EDLW~FNdE~vaRAi~~s~iPvIS 230 (440)
T COG1570 207 EDLWAFNDEIVARAIAASRIPVIS 230 (440)
T ss_pred HHHhccChHHHHHHHHhCCCCeEe
Confidence 2 12334456666678899763
No 291
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=28.21 E-value=78 Score=30.14 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=28.1
Q ss_pred CCCEEEECC-CCCCCCCchHHHHHHHHHHcCCCEEEE
Q psy17159 110 KVDGIIVPG-GFGKRGLEGKIAACKWARENNKPFLGI 145 (326)
Q Consensus 110 ~~dglilpG-G~~~~~~~~~~~~i~~~~~~~~PvLGI 145 (326)
.++||||-| |.|+-.. .+...|+++.++++||.=+
T Consensus 233 g~~GiVl~~~G~Gn~p~-~~~~~l~~a~~~gi~VV~~ 268 (323)
T cd00411 233 GYKGIVLAGYGAGNVPT-DLIDELEEAAERGVVVVNS 268 (323)
T ss_pred CCCEEEEEeECCCCCCH-HHHHHHHHHHHCCCEEEEe
Confidence 479999998 8776443 6788899999999998876
No 292
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=27.68 E-value=26 Score=32.61 Aligned_cols=36 Identities=39% Similarity=0.466 Sum_probs=26.1
Q ss_pred cCCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEehhH
Q psy17159 109 CKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGL 149 (326)
Q Consensus 109 ~~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIClG~ 149 (326)
+.+|.+|.-||-| -...+.+.+...++|+|||=.|.
T Consensus 75 ~~~D~ii~lGGDG-----T~L~~~~~~~~~~~Pilgin~G~ 110 (285)
T PF01513_consen 75 EGVDLIIVLGGDG-----TFLRAARLFGDYDIPILGINTGT 110 (285)
T ss_dssp CCSSEEEEEESHH-----HHHHHHHHCTTST-EEEEEESSS
T ss_pred cCCCEEEEECCCH-----HHHHHHHHhccCCCcEEeecCCC
Confidence 6899999999843 24455666555689999999875
No 293
>PRK06444 prephenate dehydrogenase; Provisional
Probab=27.43 E-value=75 Score=28.03 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=17.2
Q ss_pred eEEEEEcccCCCchhHHH-HHHHHHHHhhh
Q psy17159 46 VTIGLVGKYTKFEDCYAS-LTRALEHASYH 74 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~S-i~~aL~~~g~~ 74 (326)
+||+|||-.|. ... +.+.|+++|..
T Consensus 1 ~~~~iiG~~G~----mG~~~~~~~~~~g~~ 26 (197)
T PRK06444 1 MMEIIIGKNGR----LGRVLCSILDDNGLG 26 (197)
T ss_pred CEEEEEecCCc----HHHHHHHHHHhCCCE
Confidence 58999987763 333 56667777764
No 294
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=27.42 E-value=33 Score=28.21 Aligned_cols=31 Identities=23% Similarity=0.141 Sum_probs=20.9
Q ss_pred hhcCCCEEEECCCCCCCCCchHHHHHHHHHH
Q psy17159 107 DFCKVDGIIVPGGFGKRGLEGKIAACKWARE 137 (326)
Q Consensus 107 ~l~~~dglilpGG~~~~~~~~~~~~i~~~~~ 137 (326)
.++.+|.||.+||-|.....-..+++..+..
T Consensus 53 ~~~~~D~VittGG~g~~~~D~t~~a~~~~~~ 83 (144)
T PF00994_consen 53 ALDRADLVITTGGTGPGPDDVTPEALAEAGG 83 (144)
T ss_dssp HHHTTSEEEEESSSSSSTTCHHHHHHHHHSS
T ss_pred hhccCCEEEEcCCcCcccCCcccHHHHHhcC
Confidence 3467899999998765544455566665543
No 295
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=26.96 E-value=3.5e+02 Score=24.70 Aligned_cols=73 Identities=10% Similarity=0.011 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCCCCchHHHHHHHHH
Q psy17159 59 DCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKRGLEGKIAACKWAR 136 (326)
Q Consensus 59 ~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~~~~~~~~~i~~~~ 136 (326)
.-+.++...++++....+..+.+. ++.. ++..-.+..+.+ ..+||||+.+.. .......++.+.
T Consensus 11 ~~~~~~~~~i~~~a~~~g~~v~~~--~~~~--------~~~~q~~~i~~l~~~~vDgIIi~~~~----~~~~~~~l~~~~ 76 (302)
T TIGR02634 11 ERWQKDRDIFVAAAESLGAKVFVQ--SANG--------NEAKQISQIENLIARGVDVLVIIPQN----GQVLSNAVQEAK 76 (302)
T ss_pred hhHHHHHHHHHHHHHhcCCEEEEE--eCCC--------CHHHHHHHHHHHHHcCCCEEEEeCCC----hhHHHHHHHHHH
Confidence 456777788888877666554432 2210 111101112222 469999997532 122345666677
Q ss_pred HcCCCEEEE
Q psy17159 137 ENNKPFLGI 145 (326)
Q Consensus 137 ~~~~PvLGI 145 (326)
+.++|+..+
T Consensus 77 ~~~iPvV~~ 85 (302)
T TIGR02634 77 DEGIKVVAY 85 (302)
T ss_pred HCCCeEEEe
Confidence 788897655
No 296
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=26.61 E-value=66 Score=30.42 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=28.0
Q ss_pred cCCCEEEECC-CCCCCCCchHHHHHHHHHHcCCCEEEEe
Q psy17159 109 CKVDGIIVPG-GFGKRGLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 109 ~~~dglilpG-G~~~~~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
..++||||-| |.|+ ....+.+.++++.++++||.-+-
T Consensus 223 ~~~~GlVl~~~G~Gn-~~~~~~~~l~~a~~~gipVV~~s 260 (313)
T PF00710_consen 223 AGAKGLVLEGYGAGN-VPPALLEALARAVERGIPVVVTS 260 (313)
T ss_dssp TT-SEEEEEEBTTTB-SSHHHHHHHHHHHHTTSEEEEEE
T ss_pred ccCCEEEEeccCCCC-CCHHHHHHHHHHHhcCceEEEec
Confidence 5679999988 7776 33467788999999999987653
No 297
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=26.58 E-value=60 Score=31.25 Aligned_cols=38 Identities=32% Similarity=0.383 Sum_probs=28.2
Q ss_pred CCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEehhHHHHH
Q psy17159 110 KVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGLQAAV 153 (326)
Q Consensus 110 ~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIClG~QlL~ 153 (326)
..|-|++.||-|+. +.+-.++..++|+|||-.|--+-+
T Consensus 100 gVdlIvfaGGDGTa------rDVa~av~~~vPvLGipaGvk~~S 137 (355)
T COG3199 100 GVDLIVFAGGDGTA------RDVAEAVGADVPVLGIPAGVKNYS 137 (355)
T ss_pred CceEEEEeCCCccH------HHHHhhccCCCceEeeccccceec
Confidence 59999999996642 333334467899999999977655
No 298
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=26.49 E-value=3.6e+02 Score=23.45 Aligned_cols=70 Identities=16% Similarity=0.208 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCCCCchHHHHHHHHHH
Q psy17159 60 CYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKRGLEGKIAACKWARE 137 (326)
Q Consensus 60 ~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~~~~~~~~~i~~~~~ 137 (326)
-+..+...++++..+.+..+ ...++.. ++....+..+.+ ..+||||+.+.... .. ..+ +..
T Consensus 13 ~~~~~~~~i~~~~~~~g~~~--~~~~~~~--------~~~~~~~~~~~~~~~~vdgiii~~~~~~----~~--~~~-~~~ 75 (267)
T cd06284 13 FFSEILKGIEDEAREAGYGV--LLGDTRS--------DPEREQEYLDLLRRKQADGIILLDGSLP----PT--ALT-ALA 75 (267)
T ss_pred cHHHHHHHHHHHHHHcCCeE--EEecCCC--------ChHHHHHHHHHHHHcCCCEEEEecCCCC----HH--HHH-HHh
Confidence 46667788887777655443 3344211 111111112223 37999999654211 11 222 234
Q ss_pred cCCCEEEEe
Q psy17159 138 NNKPFLGIC 146 (326)
Q Consensus 138 ~~~PvLGIC 146 (326)
.++|+..++
T Consensus 76 ~~ipvv~~~ 84 (267)
T cd06284 76 KLPPIVQAC 84 (267)
T ss_pred cCCCEEEEe
Confidence 589998775
No 299
>KOG4180|consensus
Probab=26.40 E-value=74 Score=30.48 Aligned_cols=34 Identities=26% Similarity=0.416 Sum_probs=24.0
Q ss_pred hhcCCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEE
Q psy17159 107 DFCKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGI 145 (326)
Q Consensus 107 ~l~~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGI 145 (326)
.+..+|.||=.||-|+- +.+....+++.+||+||
T Consensus 102 ~i~waD~VisvGGDGTf-----L~Aasrv~~~~~PViGv 135 (395)
T KOG4180|consen 102 PIRWADMVISVGGDGTF-----LLAASRVIDDSKPVIGV 135 (395)
T ss_pred cCchhhEEEEecCccce-----eehhhhhhccCCceeee
Confidence 47789999999987642 11222255788999998
No 300
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=25.97 E-value=4.9e+02 Score=23.44 Aligned_cols=84 Identities=18% Similarity=0.148 Sum_probs=43.6
Q ss_pred eEEEEE-cccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCC
Q psy17159 46 VTIGLV-GKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGK 122 (326)
Q Consensus 46 ~~I~ii-gdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~ 122 (326)
..|+++ .++.. .-+.++...++.+..+.+..+.+..... ++..-.+..+.+ ..+||+|+.+..
T Consensus 27 ~~I~vi~~~~~~--~f~~~~~~~i~~~~~~~G~~~~~~~~~~----------d~~~~~~~~~~l~~~~~dgiii~~~~-- 92 (295)
T PRK10653 27 DTIALVVSTLNN--PFFVSLKDGAQKEADKLGYNLVVLDSQN----------NPAKELANVQDLTVRGTKILLINPTD-- 92 (295)
T ss_pred CeEEEEecCCCC--hHHHHHHHHHHHHHHHcCCeEEEecCCC----------CHHHHHHHHHHHHHcCCCEEEEcCCC--
Confidence 367766 22221 3466788888888877665544322111 111111112222 379999997532
Q ss_pred CCCchHHHHHHHHHHcCCCEEEE
Q psy17159 123 RGLEGKIAACKWARENNKPFLGI 145 (326)
Q Consensus 123 ~~~~~~~~~i~~~~~~~~PvLGI 145 (326)
. ......++.+.+.++|+.-+
T Consensus 93 ~--~~~~~~l~~~~~~~ipvV~~ 113 (295)
T PRK10653 93 S--DAVGNAVKMANQANIPVITL 113 (295)
T ss_pred h--HHHHHHHHHHHHCCCCEEEE
Confidence 1 11124455565678887755
No 301
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.84 E-value=3.7e+02 Score=23.94 Aligned_cols=71 Identities=15% Similarity=0.059 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhh-hh-cCCCEEEECCCCCCCCCchHHHHHHHHHHc
Q psy17159 61 YASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWS-DF-CKVDGIIVPGGFGKRGLEGKIAACKWAREN 138 (326)
Q Consensus 61 ~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~-~l-~~~dglilpGG~~~~~~~~~~~~i~~~~~~ 138 (326)
+..+.+.+.+.+.+.+..+. +..+.. ++..-.+..+ .+ ..+||||+.+. + . ......++++.+.
T Consensus 14 ~~~~~~gi~~~~~~~G~~~~--~~~~~~--------d~~~~~~~i~~~~~~~vdgiii~~~-~-~--~~~~~~i~~~~~~ 79 (272)
T cd06313 14 CAQGKQAADEAGKLLGVDVT--WYGGAL--------DAVKQVAAIENMASQGWDFIAVDPL-G-I--GTLTEAVQKAIAR 79 (272)
T ss_pred HHHHHHHHHHHHHHcCCEEE--EecCCC--------CHHHHHHHHHHHHHcCCCEEEEcCC-C-h--HHhHHHHHHHHHC
Confidence 44567777777666554443 333211 1111101111 22 46899999653 1 1 1123456666677
Q ss_pred CCCEEEE
Q psy17159 139 NKPFLGI 145 (326)
Q Consensus 139 ~~PvLGI 145 (326)
++|+.-+
T Consensus 80 ~iPvV~~ 86 (272)
T cd06313 80 GIPVIDM 86 (272)
T ss_pred CCcEEEe
Confidence 8886443
No 302
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=25.13 E-value=1.5e+02 Score=28.24 Aligned_cols=24 Identities=21% Similarity=0.148 Sum_probs=16.8
Q ss_pred CCEEEECCCCCCCCCchHHHHHHH
Q psy17159 111 VDGIIVPGGFGKRGLEGKIAACKW 134 (326)
Q Consensus 111 ~dglilpGG~~~~~~~~~~~~i~~ 134 (326)
+|-||++||-+.....-..++++.
T Consensus 220 ~DlIItTGGtsvg~~D~tp~Ai~~ 243 (312)
T cd03522 220 AELLILTGGASVDPDDVTPAAIRA 243 (312)
T ss_pred CCEEEEeCCcccCCcchHHHHHHh
Confidence 899999999776544445555554
No 303
>PRK11096 ansB L-asparaginase II; Provisional
Probab=25.08 E-value=1.7e+02 Score=28.28 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=28.0
Q ss_pred CCCEEEECC-CCCCCCCchHHHHHHHHHHcCCCEEEE
Q psy17159 110 KVDGIIVPG-GFGKRGLEGKIAACKWARENNKPFLGI 145 (326)
Q Consensus 110 ~~dglilpG-G~~~~~~~~~~~~i~~~~~~~~PvLGI 145 (326)
.++||||-| |.|+-. ..+.+.|+++.++++||.-+
T Consensus 256 ~~~GiVl~g~G~Gn~~-~~~~~~l~~a~~~GipVV~~ 291 (347)
T PRK11096 256 GYDGIVSAGVGNGNLY-KTVFDTLATAAKNGVAVVRS 291 (347)
T ss_pred cCCEEEEEeECCCCCC-HHHHHHHHHHHHCCCEEEEe
Confidence 579999998 777643 35788899999999998764
No 304
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=25.08 E-value=1e+02 Score=27.65 Aligned_cols=40 Identities=33% Similarity=0.400 Sum_probs=26.0
Q ss_pred hcCCCEEEECCCCCCC-CCc-hHHHHHHHHHHcCCCEEEEeh
Q psy17159 108 FCKVDGIIVPGGFGKR-GLE-GKIAACKWARENNKPFLGICL 147 (326)
Q Consensus 108 l~~~dglilpGG~~~~-~~~-~~~~~i~~~~~~~~PvLGICl 147 (326)
+.+.|+|.++=|||.- +.+ +..-+=--+...++|+.|||-
T Consensus 56 ~~dld~iav~~GPGSFTGlRIG~~~AkgLA~~l~iplvgvss 97 (220)
T COG1214 56 LQDLDAIAVAKGPGSFTGLRIGVAFAKGLALALNIPLVGVSS 97 (220)
T ss_pred HHHCCEEEEccCCCcccchhhHHHHHHHHHHHcCCCEEEeCH
Confidence 4578999999999862 322 222111234467999999983
No 305
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=25.04 E-value=4e+02 Score=23.69 Aligned_cols=72 Identities=8% Similarity=-0.109 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhh-hh-cCCCEEEECCCCCCCCCchHHHHHHHHHH
Q psy17159 60 CYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWS-DF-CKVDGIIVPGGFGKRGLEGKIAACKWARE 137 (326)
Q Consensus 60 ~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~-~l-~~~dglilpGG~~~~~~~~~~~~i~~~~~ 137 (326)
-+.++.+.+..+....+..+.+ .++.. +.+-.+..+ .+ ..+||||+.+... ......++.+.+
T Consensus 13 ~~~~~~~gi~~~~~~~g~~~~~--~~~~~---------~~~~~~~i~~~~~~~~dgiii~~~~~----~~~~~~~~~~~~ 77 (289)
T cd01540 13 WFQTEWKFAKKAAKEKGFTVVK--IDVPD---------GEKVLSAIDNLGAQGAKGFVICVPDV----KLGPAIVAKAKA 77 (289)
T ss_pred HHHHHHHHHHHHHHHcCCEEEE--ccCCC---------HHHHHHHHHHHHHcCCCEEEEccCch----hhhHHHHHHHHh
Confidence 4666777777777665544433 33211 000000111 12 3699999986311 112345666667
Q ss_pred cCCCEEEEe
Q psy17159 138 NNKPFLGIC 146 (326)
Q Consensus 138 ~~~PvLGIC 146 (326)
.++|+..+.
T Consensus 78 ~~iPvV~~~ 86 (289)
T cd01540 78 YNMKVVAVD 86 (289)
T ss_pred CCCeEEEec
Confidence 889987664
No 306
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=25.02 E-value=3.8e+02 Score=22.46 Aligned_cols=52 Identities=12% Similarity=0.173 Sum_probs=31.5
Q ss_pred EEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECC
Q psy17159 47 TIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPG 118 (326)
Q Consensus 47 ~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpG 118 (326)
+|+|+ |++..||-..+.++|...-.. ..+++.-+... + ...+.++|.|||.-
T Consensus 1 ~i~Ii--Y~S~tGnTe~vA~~Ia~~l~~--~~~~i~~~~~~---------~-------~~~l~~~d~ii~gs 52 (167)
T TIGR01752 1 KIGIF--YGTDTGNTEGIAEKIQKELGE--DDVDVFNIAKA---------S-------KEDLNAYDKLILGT 52 (167)
T ss_pred CEEEE--EECCCChHHHHHHHHHHHhCC--CceEEEEcccC---------C-------HhHHhhCCEEEEEe
Confidence 36666 777889999999988765432 12333322210 0 12577899988865
No 307
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=24.79 E-value=3.6e+02 Score=23.82 Aligned_cols=64 Identities=20% Similarity=0.212 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCCCchHHHHHHHHHHcC
Q psy17159 60 CYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRGLEGKIAACKWARENN 139 (326)
Q Consensus 60 ~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~~~~~~~~i~~~~~~~ 139 (326)
.+..+.+.+.++....+..+.+...+.. .......+||||+.+-.. . ..++.+.+.+
T Consensus 18 ~~~~~~~gi~~~~~~~g~~~~~~~~~~~----------------~~~~~~~vdgii~~~~~~----~---~~~~~~~~~~ 74 (270)
T cd01544 18 YYLSIRLGIEKRAQELGIELTKFFRDDD----------------LLEILEDVDGIIAIGKFS----Q---EQLAKLAKLN 74 (270)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEeccch----------------hHHhccCcCEEEEecCCC----H---HHHHHHHhhC
Confidence 3556777888777766555544433210 011346889999865211 1 3445555567
Q ss_pred CCEEEEe
Q psy17159 140 KPFLGIC 146 (326)
Q Consensus 140 ~PvLGIC 146 (326)
+|+.-+.
T Consensus 75 ~pvV~~~ 81 (270)
T cd01544 75 PNLVFVD 81 (270)
T ss_pred CCEEEEC
Confidence 8876654
No 308
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=24.69 E-value=3.7e+02 Score=24.18 Aligned_cols=26 Identities=8% Similarity=0.124 Sum_probs=17.7
Q ss_pred EEEEEcccCCC-chhHHHHHHHHHHHh
Q psy17159 47 TIGLVGKYTKF-EDCYASLTRALEHAS 72 (326)
Q Consensus 47 ~I~iigdyg~~-~~~~~Si~~aL~~~g 72 (326)
+.+++||+|.. ..+...+.+++....
T Consensus 2 ~f~~~gD~g~~~~~~~~~~~~~~~~~~ 28 (277)
T cd07378 2 RFLALGDWGGGGTAGQKAVAKAMAKVA 28 (277)
T ss_pred eEEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 68899999974 344566666666554
No 309
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=24.48 E-value=3.2e+02 Score=20.84 Aligned_cols=77 Identities=12% Similarity=0.035 Sum_probs=43.1
Q ss_pred ceEEEEEcccCCCchhHHH-HHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCC
Q psy17159 45 TVTIGLVGKYTKFEDCYAS-LTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKR 123 (326)
Q Consensus 45 ~~~I~iigdyg~~~~~~~S-i~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~ 123 (326)
+.+|.++=.- |.=.| +...+++...+.+.++++.-....+ +.+.+.++|.|++++-
T Consensus 3 ~~~ILl~C~~----G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~---------------~~~~~~~~Dvill~pq---- 59 (95)
T TIGR00853 3 ETNILLLCAA----GMSTSLLVNKMNKAAEEYGVPVKIAAGSYGA---------------AGEKLDDADVVLLAPQ---- 59 (95)
T ss_pred ccEEEEECCC----chhHHHHHHHHHHHHHHCCCcEEEEEecHHH---------------HHhhcCCCCEEEECch----
Confidence 3578877122 33233 5567777766666666655554322 2234567898887753
Q ss_pred CCchHHHHHHHHH-HcCCCEEEE
Q psy17159 124 GLEGKIAACKWAR-ENNKPFLGI 145 (326)
Q Consensus 124 ~~~~~~~~i~~~~-~~~~PvLGI 145 (326)
.....+.++... +.++|+--|
T Consensus 60 -i~~~~~~i~~~~~~~~ipv~~I 81 (95)
T TIGR00853 60 -VAYMLPDLKKETDKKGIPVEVI 81 (95)
T ss_pred -HHHHHHHHHHHhhhcCCCEEEe
Confidence 234455555444 346888665
No 310
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=24.06 E-value=3.5e+02 Score=26.59 Aligned_cols=88 Identities=15% Similarity=0.164 Sum_probs=51.7
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECC---CCCC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPG---GFGK 122 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpG---G~~~ 122 (326)
-.++|| -||+..+.-.+.++.|+..|.+++. +.+..+.+ -..+++.+.+++++.|++.. .+|.
T Consensus 262 Ae~viV-~~GS~~~~~keav~~LR~~G~kVGl-lri~~~rP------------FP~~~i~~~l~~~k~ViVvE~n~s~g~ 327 (394)
T PRK08367 262 AEIIFV-TMGSLAGTLKEFVDKLREEGYKVGA-AKLTVYRP------------FPVEEIRALAKKAKVLAFLEKNISFGL 327 (394)
T ss_pred CCEEEE-EeCccHHHHHHHHHHHHhcCCccee-EEEeEecC------------CCHHHHHHHHccCCEEEEEeCCCCCCC
Confidence 468888 8888777777777778777765542 22322221 11122445678999998866 2232
Q ss_pred CCCchHHHHHHHHH---HcCCCEEEEehhH
Q psy17159 123 RGLEGKIAACKWAR---ENNKPFLGICLGL 149 (326)
Q Consensus 123 ~~~~~~~~~i~~~~---~~~~PvLGIClG~ 149 (326)
. ..+..-++.++ .+..|+.+.+.|+
T Consensus 328 ~--g~l~~dV~aal~~~~~~~~v~~~~~gl 355 (394)
T PRK08367 328 G--GAVFADASAALVNESEKPKILDFIIGL 355 (394)
T ss_pred C--CcHHHHHHHHHhccCCCCeEEEEEeCC
Confidence 1 12344455554 2235678888775
No 311
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=24.06 E-value=4e+02 Score=25.19 Aligned_cols=132 Identities=12% Similarity=0.052 Sum_probs=68.6
Q ss_pred HHHHHHHhhcCCCCC-CCeeeCCCCCcccccchhhhhc-CCCceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEE
Q psy17159 5 ESVRAKISMFCHVTP-ENVIFNPDVKPIYKVRMLRIDR-LNKTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLK 82 (326)
Q Consensus 5 ~~~~~ki~~~~~~~~-~~v~~~~~~~~~y~~p~~~~~~-~~~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~ 82 (326)
+++|++||.+.|.+. ++|+-.++...-...=...+.. ...+-+|.+. +. .+.|....+..+....+.+| .
T Consensus 46 ~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~l~~~~~~g~~vl~~-~~-----~~~s~~~~~~~~~~~~g~~v--~ 117 (371)
T PF00266_consen 46 EEAREALAKLLGAPPDEEVVFTSNGTEALNAVASSLLNPLKPGDEVLVT-SN-----EHPSNRYPWEEIAKRKGAEV--R 117 (371)
T ss_dssp HHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHHHHHHGTTTCEEEEE-ES-----SHHHHHHHHHHHHHHTTEEE--E
T ss_pred HHHHHHHHHhcCCccccccccccccchhhhhhhhccccccccccccccc-cc-----cccccccccccccccchhhh--c
Confidence 578999999999999 8888777766443333333311 2333467777 43 36777766666654444344 4
Q ss_pred EeecccccCCCCCCCchhhcchhhhh-cCCCEEEECCCCCCCCC-chHHHHHHHHHHcCCCEEEEehhHHHHH
Q psy17159 83 YFDSELLSMDPKTGNMAEYHKTWSDF-CKVDGIIVPGGFGKRGL-EGKIAACKWARENNKPFLGICLGLQAAV 153 (326)
Q Consensus 83 ~i~~~~l~~~~~~~~~~~~~~~~~~l-~~~dglilpGG~~~~~~-~~~~~~i~~~~~~~~PvLGIClG~QlL~ 153 (326)
+++...-... +++. +.+.+ .+.+.++++--....+. ..+.++.+.+.+. -++=++=|.|.++
T Consensus 118 ~i~~~~~~~~----~~~~---~~~~l~~~~~lv~~~~~~~~tG~~~pi~~I~~~~~~~--~~~~~vD~~~~~g 181 (371)
T PF00266_consen 118 VIPADPGGSL----DLED---LEEALNPDTRLVSISHVENSTGVRNPIEEIAKLAHEY--GALLVVDAAQSAG 181 (371)
T ss_dssp EEEEGTTSSC----SHHH---HHHHHHTTESEEEEESBETTTTBBSSHHHHHHHHHHT--TSEEEEE-TTTTT
T ss_pred cccccccchh----hhhh---hhhhhccccceEEeecccccccEEeeeceehhhhhcc--CCceeEechhccc
Confidence 4443210000 1221 22334 57788888874322222 2233333444443 3455555555543
No 312
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=24.05 E-value=2.7e+02 Score=24.96 Aligned_cols=18 Identities=6% Similarity=-0.202 Sum_probs=12.3
Q ss_pred hcchhhhhcCCCEEEECC
Q psy17159 101 YHKTWSDFCKVDGIIVPG 118 (326)
Q Consensus 101 ~~~~~~~l~~~dglilpG 118 (326)
.....+.+..+||+||.-
T Consensus 81 v~~l~~~v~~ADgvii~T 98 (219)
T TIGR02690 81 VRELRQLSEWSEGQVWCS 98 (219)
T ss_pred HHHHHHHHHhCCEEEEeC
Confidence 344556677899998753
No 313
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=23.99 E-value=71 Score=30.26 Aligned_cols=44 Identities=9% Similarity=0.105 Sum_probs=28.5
Q ss_pred cchhhhhcCCCEEEECCCCCCCCC--chHHHHHHHHHHcCCCEEEEe
Q psy17159 102 HKTWSDFCKVDGIIVPGGFGKRGL--EGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 102 ~~~~~~l~~~dglilpGG~~~~~~--~~~~~~i~~~~~~~~PvLGIC 146 (326)
.++.+.+.++|.|||++|.-.... .-.+.-|++++ .+.|+.+||
T Consensus 177 p~vl~AI~~AD~IiiGPgnp~TSI~P~L~v~gi~eAL-~~a~vV~Vs 222 (303)
T PRK13606 177 PGVLEAIEEADAVIIGPSNPVTSIGPILAVPGIREAL-TEAPVVAVS 222 (303)
T ss_pred HHHHHHHHhCCEEEECCCccHHhhchhccchhHHHHH-hCCCEEEEc
Confidence 345667789999999876322211 11234456666 689999998
No 314
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=23.99 E-value=2.8e+02 Score=27.32 Aligned_cols=58 Identities=10% Similarity=0.238 Sum_probs=38.1
Q ss_pred EEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECC
Q psy17159 47 TIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPG 118 (326)
Q Consensus 47 ~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpG 118 (326)
+|+|+ |.+-.|+-.-+.++|.+--.+.+++|.++.+...+.. ++.+.+.+++||++.-
T Consensus 248 ~V~l~--Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~~~~~------------eI~~~i~~a~~~vvGs 305 (388)
T COG0426 248 KVDLI--YDSMYGNTEKMAQAIAEGLMKEGVDVEVINLEDADPS------------EIVEEILDAKGLVVGS 305 (388)
T ss_pred eEEEE--EecccCCHHHHHHHHHHHhhhcCCceEEEEcccCCHH------------HHHHHHhhcceEEEec
Confidence 79888 3343455566666666655666777777777643322 2556778999999854
No 315
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=23.98 E-value=5.6e+02 Score=23.38 Aligned_cols=85 Identities=18% Similarity=0.278 Sum_probs=42.7
Q ss_pred CceEEEEEc-ccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCC
Q psy17159 44 KTVTIGLVG-KYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGF 120 (326)
Q Consensus 44 ~~~~I~iig-dyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~ 120 (326)
++..|+++= ++.. .-+.++.+.+++.....+..+.+..... ++..-.+..+.+ ..+||||+.+..
T Consensus 60 ~~~~Igvv~~~~~~--~~~~~l~~gi~~~~~~~g~~~~~~~~~~----------~~~~~~~~~~~l~~~~vdgiIi~~~~ 127 (328)
T PRK11303 60 RTRSIGLIIPDLEN--TSYARIAKYLERQARQRGYQLLIACSDD----------QPDNEMRCAEHLLQRQVDALIVSTSL 127 (328)
T ss_pred CCceEEEEeCCCCC--chHHHHHHHHHHHHHHcCCEEEEEeCCC----------CHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 345788772 2211 2356677788877766665554433221 111000112222 379999997642
Q ss_pred CCCCCchHHHHHHHHHHcCCCEEEE
Q psy17159 121 GKRGLEGKIAACKWARENNKPFLGI 145 (326)
Q Consensus 121 ~~~~~~~~~~~i~~~~~~~~PvLGI 145 (326)
.. . ...++.+.+.++|+.-+
T Consensus 128 ~~--~---~~~~~~l~~~~iPvV~v 147 (328)
T PRK11303 128 PP--E---HPFYQRLQNDGLPIIAL 147 (328)
T ss_pred CC--C---hHHHHHHHhcCCCEEEE
Confidence 21 1 12344445567887543
No 316
>CHL00067 rps2 ribosomal protein S2
Probab=23.80 E-value=1.1e+02 Score=27.66 Aligned_cols=31 Identities=19% Similarity=0.140 Sum_probs=23.3
Q ss_pred CCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEe
Q psy17159 110 KVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 110 ~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
.+|.||+.+-. ....++++|...++|+.|||
T Consensus 161 ~P~~iiv~d~~------~~~~ai~Ea~~l~IPvIaiv 191 (230)
T CHL00067 161 LPDIVIIIDQQ------EEYTALRECRKLGIPTISIL 191 (230)
T ss_pred CCCEEEEeCCc------ccHHHHHHHHHcCCCEEEEE
Confidence 46777776431 23468899999999999999
No 317
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=23.43 E-value=5.1e+02 Score=23.20 Aligned_cols=19 Identities=5% Similarity=-0.060 Sum_probs=11.9
Q ss_pred ceEEEEEcccCCCchhHHHHHH
Q psy17159 45 TVTIGLVGKYTKFEDCYASLTR 66 (326)
Q Consensus 45 ~~~I~iigdyg~~~~~~~Si~~ 66 (326)
.+||+++.|.- +|+..+-+
T Consensus 4 ~~kIl~iSDiH---gn~~~le~ 22 (224)
T cd07388 4 VRYVLATSNPK---GDLEALEK 22 (224)
T ss_pred eeEEEEEEecC---CCHHHHHH
Confidence 36899996654 56554443
No 318
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=23.00 E-value=2.4e+02 Score=27.90 Aligned_cols=87 Identities=14% Similarity=0.110 Sum_probs=45.7
Q ss_pred ceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhh---hhcC--CCEEEECCC
Q psy17159 45 TVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWS---DFCK--VDGIIVPGG 119 (326)
Q Consensus 45 ~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~---~l~~--~dglilpGG 119 (326)
..+||||---.. ..+..+.+.+.+.... +.+...++ .+..... -.++.+ .++. +|.|||.=|
T Consensus 135 p~~I~viTs~~g--Aa~~D~~~~~~~r~p~----~~~~~~~~-~vQG~~A------~~~i~~al~~~~~~~~Dviii~RG 201 (438)
T PRK00286 135 PKRIGVITSPTG--AAIRDILTVLRRRFPL----VEVIIYPT-LVQGEGA------AASIVAAIERANARGEDVLIVARG 201 (438)
T ss_pred CCEEEEEeCCcc--HHHHHHHHHHHhcCCC----CeEEEecC-cCcCccH------HHHHHHHHHHhcCCCCCEEEEecC
Confidence 358999922221 4688888888877532 33443332 1211110 011122 2222 688988655
Q ss_pred CCCCC---CchHHHHHHHHHHcCCCEEE
Q psy17159 120 FGKRG---LEGKIAACKWARENNKPFLG 144 (326)
Q Consensus 120 ~~~~~---~~~~~~~i~~~~~~~~PvLG 144 (326)
-|... .-+...+++...+..+||+-
T Consensus 202 GGS~eDL~~Fn~e~v~~ai~~~~~Pvis 229 (438)
T PRK00286 202 GGSLEDLWAFNDEAVARAIAASRIPVIS 229 (438)
T ss_pred CCCHHHhhccCcHHHHHHHHcCCCCEEE
Confidence 55431 12344566666677899873
No 319
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=22.98 E-value=97 Score=25.89 Aligned_cols=30 Identities=17% Similarity=0.181 Sum_probs=22.1
Q ss_pred CCEEEECCCCCCCCCchHHHHHHHHHHcCCCE
Q psy17159 111 VDGIIVPGGFGKRGLEGKIAACKWARENNKPF 142 (326)
Q Consensus 111 ~dglilpGG~~~~~~~~~~~~i~~~~~~~~Pv 142 (326)
.++|.|+||. -....+.++++.+.+.++++
T Consensus 62 ~~gVt~SGGE--l~~~~l~~ll~~lk~~Gl~i 91 (147)
T TIGR02826 62 ISCVLFLGGE--WNREALLSLLKIFKEKGLKT 91 (147)
T ss_pred CCEEEEechh--cCHHHHHHHHHHHHHCCCCE
Confidence 5799999998 23345677788877777765
No 320
>KOG2708|consensus
Probab=22.86 E-value=1.7e+02 Score=26.90 Aligned_cols=47 Identities=23% Similarity=0.251 Sum_probs=28.8
Q ss_pred hcCCCEEEECCCCCCCCCchHHHHH-HHH-HHcCCCEEEE--ehhHHHHHH
Q psy17159 108 FCKVDGIIVPGGFGKRGLEGKIAAC-KWA-RENNKPFLGI--CLGLQAAVI 154 (326)
Q Consensus 108 l~~~dglilpGG~~~~~~~~~~~~i-~~~-~~~~~PvLGI--ClG~QlL~~ 154 (326)
.++.|.|...-|||...-....... |.+ .--++|+.|+ |.||.-|..
T Consensus 68 ~~diD~icyTKGPGmgaPL~~vaivaRtlsllw~kPlv~VNHCigHIEMGR 118 (336)
T KOG2708|consen 68 SDDIDCICYTKGPGMGAPLSVVAIVARTLSLLWNKPLVGVNHCIGHIEMGR 118 (336)
T ss_pred hhhCCEEEEcCCCCCCCchhhHHHHHHHHHHHhCCCcccchhhhhhhhhcc
Confidence 4578999999888764322222222 211 1238999998 888876653
No 321
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=22.62 E-value=82 Score=31.10 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=13.1
Q ss_pred hhcCCCEEEECCCCCCC
Q psy17159 107 DFCKVDGIIVPGGFGKR 123 (326)
Q Consensus 107 ~l~~~dglilpGG~~~~ 123 (326)
.++++|.||.+||.+.-
T Consensus 239 a~~~~DviItsGG~SvG 255 (404)
T COG0303 239 ALSEADVIITSGGVSVG 255 (404)
T ss_pred hhhcCCEEEEeCCccCc
Confidence 44579999999996543
No 322
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=22.58 E-value=6.3e+02 Score=25.21 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=21.3
Q ss_pred hhcCCCEEEECC-CCCCCCCchHHHHHHHHHHcCCCEE
Q psy17159 107 DFCKVDGIIVPG-GFGKRGLEGKIAACKWARENNKPFL 143 (326)
Q Consensus 107 ~l~~~dglilpG-G~~~~~~~~~~~~i~~~~~~~~PvL 143 (326)
.+.++|+||||- |-|. ....-..|..+++.++|+|
T Consensus 140 ~l~~~~~vVLSDY~KG~--L~~~q~~I~~ar~~~~pVL 175 (467)
T COG2870 140 ALKSFDALVLSDYAKGV--LTNVQKMIDLAREAGIPVL 175 (467)
T ss_pred HhhcCCEEEEecccccc--chhHHHHHHHHHHcCCcEE
Confidence 567788888885 3332 1223455666667777775
No 323
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=22.50 E-value=1.4e+02 Score=29.54 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=16.1
Q ss_pred hcCCCEEEECCCCCCCCCchHHHHHH
Q psy17159 108 FCKVDGIIVPGGFGKRGLEGKIAACK 133 (326)
Q Consensus 108 l~~~dglilpGG~~~~~~~~~~~~i~ 133 (326)
++.+|.||++||-+........++++
T Consensus 257 ~~~~DlIItTGG~S~G~~D~v~~~l~ 282 (419)
T PRK14690 257 AAEADVILTSGGASAGDEDHVSALLR 282 (419)
T ss_pred CccCCEEEEcCCccCCCcchHHHHHH
Confidence 45799999999866533333333443
No 324
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=22.31 E-value=2.7e+02 Score=24.25 Aligned_cols=23 Identities=13% Similarity=0.141 Sum_probs=16.3
Q ss_pred HHHHHHHHHHcCCCEEEEehhHH
Q psy17159 128 KIAACKWARENNKPFLGICLGLQ 150 (326)
Q Consensus 128 ~~~~i~~~~~~~~PvLGIClG~Q 150 (326)
+.+.++.+.+.++|+...+-|+-
T Consensus 55 i~~~i~~~~~~~kpvia~v~g~~ 77 (208)
T cd07023 55 IYREIRRLRKAKKPVVASMGDVA 77 (208)
T ss_pred HHHHHHHHHhcCCcEEEEECCcc
Confidence 44566666666899998877753
No 325
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=22.20 E-value=2.6e+02 Score=23.34 Aligned_cols=53 Identities=19% Similarity=0.140 Sum_probs=32.6
Q ss_pred cCCCchhHHHHHHHHHHHhhhcCCceEEEEeeccc-ccCCCCCCCchhhcchhhhhcCCCEEEECCC
Q psy17159 54 YTKFEDCYASLTRALEHASYHSNRHLQLKYFDSEL-LSMDPKTGNMAEYHKTWSDFCKVDGIIVPGG 119 (326)
Q Consensus 54 yg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~-l~~~~~~~~~~~~~~~~~~l~~~dglilpGG 119 (326)
||. .++..+...++..+...+.++++..-+.+- +-+ .+.+..+.+|||||=+|
T Consensus 21 YG~--~tl~~i~~~l~~~a~~~g~~v~~~QSN~Egelid-----------~I~~a~~~~dgiIINpg 74 (140)
T cd00466 21 YGT--TTLADIEALLRELAAELGVEVEFFQSNHEGELID-----------WIHEARDGADGIIINPG 74 (140)
T ss_pred CCc--CCHHHHHHHHHHHHHHcCCEEEEEeeCcHHHHHH-----------HHHHhhccCcEEEEcch
Confidence 776 678999999999888776665555444221 100 01112346899999654
No 326
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=22.16 E-value=95 Score=28.48 Aligned_cols=86 Identities=20% Similarity=0.146 Sum_probs=46.0
Q ss_pred cccCCCchhHHHHHHHHHHHhhhcCC--ceEEEEeecccccCCCCCCCchhhcchhhh-h--cCCCEEEECC-CCCCCCC
Q psy17159 52 GKYTKFEDCYASLTRALEHASYHSNR--HLQLKYFDSELLSMDPKTGNMAEYHKTWSD-F--CKVDGIIVPG-GFGKRGL 125 (326)
Q Consensus 52 gdyg~~~~~~~Si~~aL~~~g~~~~~--~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~-l--~~~dglilpG-G~~~~~~ 125 (326)
-|+|.+.++-..+.+....++..+.. ++.++.-. -+.+ +. .++...+ + ..+|+||++| ..|.+..
T Consensus 123 tdqGiieg~A~e~~r~r~~L~~~v~vlADv~VKHa~--~l~~------~~-~~~~v~dtver~~aDaVI~tG~~TG~~~d 193 (263)
T COG0434 123 TDQGIIEGNAAELARYRARLGSRVKVLADVHVKHAV--HLGN------RS-LEEAVKDTVERGLADAVIVTGSRTGSPPD 193 (263)
T ss_pred cccceecchHHHHHHHHHhccCCcEEEeecchhccc--ccCC------cC-HHHHHHHHHHccCCCEEEEecccCCCCCC
Confidence 37777778888877777766632211 11111100 0100 00 1111112 3 3689999999 4566555
Q ss_pred chHHHHHHHHHHcCCCEE---EEehh
Q psy17159 126 EGKIAACKWARENNKPFL---GICLG 148 (326)
Q Consensus 126 ~~~~~~i~~~~~~~~PvL---GIClG 148 (326)
...++.++.+. +.|+| |+|..
T Consensus 194 ~~el~~a~~~~--~~pvlvGSGv~~e 217 (263)
T COG0434 194 LEELKLAKEAV--DTPVLVGSGVNPE 217 (263)
T ss_pred HHHHHHHHhcc--CCCEEEecCCCHH
Confidence 55566666653 59998 66653
No 327
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=22.06 E-value=2.9e+02 Score=26.13 Aligned_cols=87 Identities=15% Similarity=0.063 Sum_probs=46.6
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCch-hhcchhhhh-cCCCEEEECCCCCCC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMA-EYHKTWSDF-CKVDGIIVPGGFGKR 123 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~-~~~~~~~~l-~~~dglilpGG~~~~ 123 (326)
.+|+++-+... ..-+.++...+++++.+.+.++. +..+..- +.. .-+.+...+ ..+||||+.+.
T Consensus 24 ~~i~~v~k~~~-~pf~~~~~~Gi~~aa~~~G~~v~--~~~~~~~-------d~~~q~~~i~~li~~~vdgIiv~~~---- 89 (336)
T PRK15408 24 ERIAFIPKLVG-VGFFTSGGNGAKEAGKELGVDVT--YDGPTEP-------SVSGQVQLINNFVNQGYNAIIVSAV---- 89 (336)
T ss_pred cEEEEEECCCC-CHHHHHHHHHHHHHHHHhCCEEE--EECCCCC-------CHHHHHHHHHHHHHcCCCEEEEecC----
Confidence 57888833221 12355677778877776665443 3221110 010 000011122 47999999742
Q ss_pred CCchHHHHHHHHHHcCCCEEEEe
Q psy17159 124 GLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 124 ~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
....+...++.+.+.++|+.-+-
T Consensus 90 d~~al~~~l~~a~~~gIpVV~~d 112 (336)
T PRK15408 90 SPDGLCPALKRAMQRGVKVLTWD 112 (336)
T ss_pred CHHHHHHHHHHHHHCCCeEEEeC
Confidence 12234567788888888887653
No 328
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.84 E-value=2.8e+02 Score=24.43 Aligned_cols=69 Identities=30% Similarity=0.371 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCCCCchHHHHHHHHHH
Q psy17159 60 CYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKRGLEGKIAACKWARE 137 (326)
Q Consensus 60 ~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~~~~~~~~~i~~~~~ 137 (326)
.+.++...++++....+..+.+...+... . ... +..+.+ ..+||||+.+... . ..++.+.+
T Consensus 16 ~~~~~~~~i~~~~~~~g~~~~~~~~~~~~-~------~~~---~~~~~l~~~~vdgiii~~~~~----~---~~~~~l~~ 78 (268)
T cd06277 16 FYSEIYRAIEEEAKKYGYNLILKFVSDED-E------EEF---ELPSFLEDGKVDGIILLGGIS----T---EYIKEIKE 78 (268)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEeCCCCh-H------HHH---HHHHHHHHCCCCEEEEeCCCC----h---HHHHHHhh
Confidence 35667777777776666555555544211 0 000 011222 4799999976321 1 12555666
Q ss_pred cCCCEEEE
Q psy17159 138 NNKPFLGI 145 (326)
Q Consensus 138 ~~~PvLGI 145 (326)
.++|+..+
T Consensus 79 ~~ipvV~~ 86 (268)
T cd06277 79 LGIPFVLV 86 (268)
T ss_pred cCCCEEEE
Confidence 78887654
No 329
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.62 E-value=5.6e+02 Score=22.53 Aligned_cols=73 Identities=7% Similarity=0.008 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhhhcC---CceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCCCCchHHHHHHHH
Q psy17159 61 YASLTRALEHASYHSN---RHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKRGLEGKIAACKWA 135 (326)
Q Consensus 61 ~~Si~~aL~~~g~~~~---~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~~~~~~~~~i~~~ 135 (326)
+..+...++....+.+ ..+++.+.+... ++..-.+..+.+ ..+||||+.+... ......++.+
T Consensus 14 ~~~~~~gi~~~a~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~l~~~~vDgiii~~~~~----~~~~~~i~~~ 81 (274)
T cd06311 14 TAGIVWHAQAAAKKLEAAYPDVEFILVTASN--------DTEQQNAQQDLLINRKIDALVILPFES----APLTQPVAKA 81 (274)
T ss_pred HHHHHHHHHHHHHHhhhhCCCeEEEEEcCCC--------CHHHHHHHHHHHHHcCCCEEEEeCCCc----hhhHHHHHHH
Confidence 4456777777665532 234555554321 111111122323 3699999975321 1223456666
Q ss_pred HHcCCCEEEE
Q psy17159 136 RENNKPFLGI 145 (326)
Q Consensus 136 ~~~~~PvLGI 145 (326)
.+.++|+.-+
T Consensus 82 ~~~gIpvV~~ 91 (274)
T cd06311 82 KKAGIFVVVV 91 (274)
T ss_pred HHCCCeEEEE
Confidence 6778997654
No 330
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.59 E-value=5.8e+02 Score=22.72 Aligned_cols=72 Identities=18% Similarity=0.189 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCCCCchHHHHHHHHHHc
Q psy17159 61 YASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKRGLEGKIAACKWAREN 138 (326)
Q Consensus 61 ~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~~~~~~~~~i~~~~~~ 138 (326)
+..+...+.+...+.+..+.+ ..... ++.+..+..+.+ ..+|||||.+... ......++.+.+.
T Consensus 15 ~~~~~~gi~~~a~~~gy~~~~--~~~~~--------~~~~~~~~i~~l~~~~vdgiil~~~~~----~~~~~~~~~~~~~ 80 (280)
T cd06315 15 ILGVGEGVREAAKAIGWNLRI--LDGRG--------SEAGQAAALNQAIALKPDGIVLGGVDA----AELQAELELAQKA 80 (280)
T ss_pred HHHHHHHHHHHHHHcCcEEEE--ECCCC--------CHHHHHHHHHHHHHcCCCEEEEcCCCH----HHHHHHHHHHHHC
Confidence 445777777777665544333 22210 111111122222 4899999986321 1112344555566
Q ss_pred CCCEEEEe
Q psy17159 139 NKPFLGIC 146 (326)
Q Consensus 139 ~~PvLGIC 146 (326)
++|+.-+.
T Consensus 81 ~iPvV~~d 88 (280)
T cd06315 81 GIPVVGWH 88 (280)
T ss_pred CCCEEEec
Confidence 89987664
No 331
>PRK10333 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional
Probab=21.54 E-value=73 Score=27.54 Aligned_cols=46 Identities=17% Similarity=0.195 Sum_probs=27.5
Q ss_pred hcCCCEEEECC-CCCCCCC-----chHH-HHHHHHHHcCCCEEEEehhHHHHH
Q psy17159 108 FCKVDGIIVPG-GFGKRGL-----EGKI-AACKWARENNKPFLGICLGLQAAV 153 (326)
Q Consensus 108 l~~~dglilpG-G~~~~~~-----~~~~-~~i~~~~~~~~PvLGIClG~QlL~ 153 (326)
....|-||+|| +++..+. .|.+ +.+......+.+.+|+|+-.|++.
T Consensus 107 ~~~iDlviVP~laFD~~G~RLG~GgGyYDR~L~~~~~~~~~~igla~~~Q~~~ 159 (182)
T PRK10333 107 LSRLDVLITPLVAFDEYGQRLGMGGGFYDRTLQNWQHYKTQPVGYAHDCQLVE 159 (182)
T ss_pred cccCCEEEeCceEECCCCCcccCCcchHHHHHHHhcccCCcEEEEeeeeEEeC
Confidence 34679999999 6644321 2332 344433222345899999988763
No 332
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=21.52 E-value=2e+02 Score=27.27 Aligned_cols=69 Identities=10% Similarity=0.031 Sum_probs=40.3
Q ss_pred HHHHHHHhhcCCCCCCCeeeCCCCCcccccch-hhhhc--CCCceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceE
Q psy17159 5 ESVRAKISMFCHVTPENVIFNPDVKPIYKVRM-LRIDR--LNKTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQ 80 (326)
Q Consensus 5 ~~~~~ki~~~~~~~~~~v~~~~~~~~~y~~p~-~~~~~--~~~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~ 80 (326)
-+..+.+|.+++||.-|-...-.=|.--.-.+ .-..+ ..+.+|++.+||. .++.++|-.+++..+.++.
T Consensus 110 ~~~ve~lA~~s~VPViNgLtD~~HP~Q~LADl~Ti~E~~g~l~g~k~a~vGDg-------NNv~nSl~~~~a~~G~dv~ 181 (310)
T COG0078 110 HETLEELAKYSGVPVINGLTDEFHPCQALADLMTIKEHFGSLKGLKLAYVGDG-------NNVANSLLLAAAKLGMDVR 181 (310)
T ss_pred HHHHHHHHHhCCCceEcccccccCcHHHHHHHHHHHHhcCcccCcEEEEEcCc-------chHHHHHHHHHHHhCCeEE
Confidence 45678899999999444443322221111111 11111 1356899999885 4778888888876664433
No 333
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=21.47 E-value=3.3e+02 Score=27.01 Aligned_cols=26 Identities=12% Similarity=0.073 Sum_probs=18.1
Q ss_pred ceEEEEEcccCCCchhHHHHHHHHHHHhhh
Q psy17159 45 TVTIGLVGKYTKFEDCYASLTRALEHASYH 74 (326)
Q Consensus 45 ~~~I~iigdyg~~~~~~~Si~~aL~~~g~~ 74 (326)
..+|+|+ .+|. .. .++.+.|...|+.
T Consensus 14 ~~~i~v~-G~G~--sG-~a~a~~L~~~G~~ 39 (458)
T PRK01710 14 NKKVAVV-GIGV--SN-IPLIKFLVKLGAK 39 (458)
T ss_pred CCeEEEE-cccH--HH-HHHHHHHHHCCCE
Confidence 4589999 6664 22 3788888888863
No 334
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=21.35 E-value=5.3e+02 Score=23.52 Aligned_cols=35 Identities=26% Similarity=0.189 Sum_probs=20.2
Q ss_pred CCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEehhH
Q psy17159 110 KVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGL 149 (326)
Q Consensus 110 ~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIClG~ 149 (326)
.+|+||.+.+.. .....+..+.+.++|++..+.+-
T Consensus 68 ~v~avig~~~s~-----~~~~~~~~~~~~~iP~i~~~~~~ 102 (336)
T cd06326 68 KVFALFGYVGTP-----TTAAALPLLEEAGVPLVGPFTGA 102 (336)
T ss_pred CcEEEEeCCCch-----hHHHHHHHHHHcCCeEEEecCCc
Confidence 688888764321 11223344445689999876553
No 335
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=21.22 E-value=2.1e+02 Score=26.85 Aligned_cols=91 Identities=12% Similarity=0.067 Sum_probs=47.0
Q ss_pred CceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh------cCCCEEEEC
Q psy17159 44 KTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF------CKVDGIIVP 117 (326)
Q Consensus 44 ~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l------~~~dglilp 117 (326)
-..+||||---.. ..+..+.+.+.+.+..+ .+...+. .+..... +..--++.+.+ ..+|.|||.
T Consensus 13 ~p~~I~vITs~~g--Aa~~D~~~~~~~r~~~~----~~~~~p~-~vQG~~A---~~~I~~al~~~~~~~~~~~~Dviii~ 82 (319)
T PF02601_consen 13 FPKRIAVITSPTG--AAIQDFLRTLKRRNPIV----EIILYPA-SVQGEGA---AASIVSALRKANEMGQADDFDVIIII 82 (319)
T ss_pred CCCEEEEEeCCch--HHHHHHHHHHHHhCCCc----EEEEEec-cccccch---HHHHHHHHHHHHhccccccccEEEEe
Confidence 3458999922211 46888999999866533 3333332 1111100 00000011112 258999886
Q ss_pred CCCCCC---CCchHHHHHHHHHHcCCCEEE
Q psy17159 118 GGFGKR---GLEGKIAACKWARENNKPFLG 144 (326)
Q Consensus 118 GG~~~~---~~~~~~~~i~~~~~~~~PvLG 144 (326)
=|.|.. +.-+...+++...+..+||+-
T Consensus 83 RGGGs~eDL~~FN~e~varai~~~~~Pvis 112 (319)
T PF02601_consen 83 RGGGSIEDLWAFNDEEVARAIAASPIPVIS 112 (319)
T ss_pred cCCCChHHhcccChHHHHHHHHhCCCCEEE
Confidence 555543 222345566666678899873
No 336
>PF15442 DUF4629: Domain of unknown function (DUF4629)
Probab=21.19 E-value=37 Score=28.63 Aligned_cols=20 Identities=35% Similarity=0.632 Sum_probs=16.0
Q ss_pred HHHcCCCEEE--------EehhHHHHHH
Q psy17159 135 ARENNKPFLG--------ICLGLQAAVI 154 (326)
Q Consensus 135 ~~~~~~PvLG--------IClG~QlL~~ 154 (326)
-+..+-|.|+ .||||+||-.
T Consensus 112 Krkr~~PelsQe~FKkPRs~LgMHMLeS 139 (150)
T PF15442_consen 112 KRKRNQPELSQESFKKPRSCLGMHMLES 139 (150)
T ss_pred ccccCCCccCcccccCcccccchHHHHh
Confidence 3456788888 9999999974
No 337
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=21.19 E-value=54 Score=27.40 Aligned_cols=63 Identities=13% Similarity=0.218 Sum_probs=32.5
Q ss_pred CCceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCC
Q psy17159 43 NKTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGG 119 (326)
Q Consensus 43 ~~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG 119 (326)
....+|++| |++.-+++.|+..+. ++.+.-.++....+..-. -+. .+..+.|..+|.++++|.
T Consensus 9 ~~~~~V~~V-------G~f~P~~~~l~~~~~----~v~v~d~~~~~~~~~~~~-~~~--~~~~~~l~~aD~viiTGs 71 (147)
T PF04016_consen 9 GPGDKVGMV-------GYFQPLVEKLKERGA----EVRVFDLNPDNIGEEPGD-VPD--EDAEEILPWADVVIITGS 71 (147)
T ss_dssp TTTSEEEEE-------S--HCCHHHHCCCCS----EEEEEESSGGG--SSCT--EEG--GGHHHHGGG-SEEEEECH
T ss_pred cCCCEEEEE-------cCcHHHHHHHhcCCC----CEEEEECCCCCCCCCCCc-CCH--HHHHHHHccCCEEEEEee
Confidence 345799999 445556777764333 445554444332221100 011 123457789999999995
No 338
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=21.06 E-value=4.7e+02 Score=22.70 Aligned_cols=70 Identities=14% Similarity=0.170 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCCCCchHHHHHHHHHH
Q psy17159 60 CYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKRGLEGKIAACKWARE 137 (326)
Q Consensus 60 ~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~~~~~~~~~i~~~~~ 137 (326)
-+..+...+.++..+.+..+.+..... ++..-.+..+.+ ..+||||+.+.... . ..++.+.+
T Consensus 13 ~~~~~~~~i~~~a~~~g~~~~~~~~~~----------~~~~~~~~~~~l~~~~~dgiii~~~~~~----~--~~l~~~~~ 76 (267)
T cd06283 13 FSSLVLKGIEDVCRAHGYQVLVCNSDN----------DPEKEKEYLESLLAYQVDGLIVNPTGNN----K--ELYQRLAK 76 (267)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEcCCC----------CHHHHHHHHHHHHHcCcCEEEEeCCCCC----h--HHHHHHhc
Confidence 355677777777666655544332211 111000111222 37899999764211 1 13455556
Q ss_pred cCCCEEEE
Q psy17159 138 NNKPFLGI 145 (326)
Q Consensus 138 ~~~PvLGI 145 (326)
.++|+..+
T Consensus 77 ~~ipvV~~ 84 (267)
T cd06283 77 NGKPVVLV 84 (267)
T ss_pred CCCCEEEE
Confidence 78887765
No 339
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=21.02 E-value=6.8e+02 Score=23.27 Aligned_cols=61 Identities=10% Similarity=0.184 Sum_probs=40.9
Q ss_pred CcHHHHHHHhhcCCCCCCCeeeCCCCCcc-cccchhhhhcCCCceEEEEEcccCCCchhHHHHHHHHHHHhhh
Q psy17159 3 DTESVRAKISMFCHVTPENVIFNPDVKPI-YKVRMLRIDRLNKTVTIGLVGKYTKFEDCYASLTRALEHASYH 74 (326)
Q Consensus 3 ~~~~~~~ki~~~~~~~~~~v~~~~~~~~~-y~~p~~~~~~~~~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~ 74 (326)
+..+++++||.+.++++++|+-..-.... +.+- ++..+ + .|+++ + -+|......++..|..
T Consensus 41 ~~~~lr~~ia~~~~~~~~~I~it~Gs~~~l~~~~--~~~~~--~-~vv~~-~-----P~y~~y~~~~~~~G~~ 102 (332)
T PRK06425 41 SYTDIEDQIKIYTQGLKIKVLIGPGLTHFIYRLL--SYINV--G-NIIIV-E-----PNFNEYKGYAFTHGIR 102 (332)
T ss_pred CHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHH--HHhCC--C-cEEEe-C-----CChHHHHHHHHHcCCe
Confidence 45799999999999999998877654443 3332 23233 2 57777 4 2477777777777763
No 340
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=20.89 E-value=1.1e+02 Score=28.46 Aligned_cols=35 Identities=20% Similarity=0.201 Sum_probs=24.8
Q ss_pred cCCCEEEECCCCCCCCCchHHHHHHHHHHc-CCCEEEEeh-h
Q psy17159 109 CKVDGIIVPGGFGKRGLEGKIAACKWAREN-NKPFLGICL-G 148 (326)
Q Consensus 109 ~~~dglilpGG~~~~~~~~~~~~i~~~~~~-~~PvLGICl-G 148 (326)
.++|.+|.-||-| -++.+.+.+... ++|+|||-+ |
T Consensus 38 ~~~D~vi~lGGDG-----T~L~a~~~~~~~~~~pilgIn~~G 74 (264)
T PRK03501 38 KNANIIVSIGGDG-----TFLQAVRKTGFREDCLYAGISTKD 74 (264)
T ss_pred CCccEEEEECCcH-----HHHHHHHHhcccCCCeEEeEecCC
Confidence 4579999999854 245566654333 789999999 7
No 341
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=20.73 E-value=2.2e+02 Score=23.14 Aligned_cols=78 Identities=13% Similarity=0.088 Sum_probs=38.7
Q ss_pred cCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCCCch-HHHHH
Q psy17159 54 YTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRGLEG-KIAAC 132 (326)
Q Consensus 54 yg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~~~~-~~~~i 132 (326)
|.+-.||-..+.+.|...-......+++..+. . ....+..+|.||+.++--.....+ +.+.+
T Consensus 4 Y~S~~G~Tk~~A~~ia~~l~~~~~~v~~~~~~-----~------------~~~~~~~yD~vi~gspiy~g~~~~~~~~fi 66 (143)
T PF12724_consen 4 YFSKTGNTKKIAEWIAEKLGEEGELVDLEKVE-----E------------DEPDLSDYDAVIFGSPIYAGRIPGEMREFI 66 (143)
T ss_pred EECCCchHHHHHHHHHHHHhhhccEEEHHhhh-----h------------cccccccCCEEEEEEEEECCcCCHHHHHHH
Confidence 44556777777777766543221111111110 0 112678999999987521112222 34444
Q ss_pred HHHH--HcCCCEEEEehh
Q psy17159 133 KWAR--ENNKPFLGICLG 148 (326)
Q Consensus 133 ~~~~--~~~~PvLGIClG 148 (326)
+... -.++|+.-+|-|
T Consensus 67 ~~~~~~l~~k~v~~f~~~ 84 (143)
T PF12724_consen 67 KKNKDNLKNKKVALFSVG 84 (143)
T ss_pred HHHHHHHcCCcEEEEEEe
Confidence 4322 246777665544
No 342
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=20.56 E-value=3.8e+02 Score=24.78 Aligned_cols=38 Identities=21% Similarity=-0.122 Sum_probs=21.6
Q ss_pred hhcCCCEEEECCCCCCC----CCchHHHHHHHHHH-cCCCEEE
Q psy17159 107 DFCKVDGIIVPGGFGKR----GLEGKIAACKWARE-NNKPFLG 144 (326)
Q Consensus 107 ~l~~~dglilpGG~~~~----~~~~~~~~i~~~~~-~~~PvLG 144 (326)
.++++.|||+..=.... ......+++++... .++||+.
T Consensus 220 ~f~~~~gii~G~f~~~~~~~~~~~~~~~il~~~~~~~~iPv~~ 262 (282)
T cd07025 220 VLDKVAGIILGRFTDCEDNDDFGYTLEEVLKEVLGDLGIPVLY 262 (282)
T ss_pred hhhcCCEEEEecCCCCCCCCCcccCHHHHHHHHHhcCCCCEEE
Confidence 46788999887522211 11234566666554 3788764
No 343
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=20.46 E-value=2.8e+02 Score=26.15 Aligned_cols=62 Identities=23% Similarity=0.153 Sum_probs=34.5
Q ss_pred HHHHHHHhhcCCCCCCCeeeCCCCCcccccch----------hhhhcCCCceEEEEEcccCCCchhHHHHHHHHHHHhh
Q psy17159 5 ESVRAKISMFCHVTPENVIFNPDVKPIYKVRM----------LRIDRLNKTVTIGLVGKYTKFEDCYASLTRALEHASY 73 (326)
Q Consensus 5 ~~~~~ki~~~~~~~~~~v~~~~~~~~~y~~p~----------~~~~~~~~~~~I~iigdyg~~~~~~~Si~~aL~~~g~ 73 (326)
......+|.++.|| |||.-|- ..+-|. +.+.. -+++||+++||-.- ...-+|.+.++...|.
T Consensus 106 ~~~~~~~a~~s~vP---VINa~~g--~~~HPtQ~LaDl~Ti~e~~g~-l~g~~va~vGD~~~-~~v~~Sl~~~~a~~g~ 177 (301)
T TIGR00670 106 EGAARLAAEVSEVP---VINAGDG--SNQHPTQTLLDLYTIYEEFGR-LDGLKIALVGDLKY-GRTVHSLAEALTRFGV 177 (301)
T ss_pred hhHHHHHHhhCCCC---EEeCCCC--CCCCcHHHHHHHHHHHHHhCC-CCCCEEEEEccCCC-CcHHHHHHHHHHHcCC
Confidence 34566778888886 8888652 123343 22222 34589999988410 1234555555544443
No 344
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=20.27 E-value=5.9e+02 Score=22.38 Aligned_cols=73 Identities=12% Similarity=0.067 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCCCCchHHHHHHHHH
Q psy17159 59 DCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKRGLEGKIAACKWAR 136 (326)
Q Consensus 59 ~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~~~~~~~~~i~~~~ 136 (326)
.-+..+...+.....+.+..+.+...... ++..-.+..+.+ ..+||+|+.+.. .....+.++.+.
T Consensus 11 ~~~~~~~~gi~~~~~~~g~~~~~~~~~~~---------~~~~~~~~i~~l~~~~vDgiIi~~~~----~~~~~~~l~~~~ 77 (271)
T cd06314 11 PFWKIAEAGVKAAGKELGVDVEFVVPQQG---------TVNAQLRMLEDLIAEGVDGIAISPID----PKAVIPALNKAA 77 (271)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEeCCCCC---------CHHHHHHHHHHHHhcCCCEEEEecCC----hhHhHHHHHHHh
Confidence 34666888887777766655444321110 111000111222 479999998632 112234556555
Q ss_pred HcCCCEEEE
Q psy17159 137 ENNKPFLGI 145 (326)
Q Consensus 137 ~~~~PvLGI 145 (326)
+ ++|+.-+
T Consensus 78 ~-~ipvV~~ 85 (271)
T cd06314 78 A-GIKLITT 85 (271)
T ss_pred c-CCCEEEe
Confidence 6 8887765
No 345
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.24 E-value=6.6e+02 Score=22.80 Aligned_cols=71 Identities=13% Similarity=0.053 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchh-hhh-c--CCCEEEECCCCCCCCCchHHHHHHHH
Q psy17159 60 CYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTW-SDF-C--KVDGIIVPGGFGKRGLEGKIAACKWA 135 (326)
Q Consensus 60 ~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~-~~l-~--~~dglilpGG~~~~~~~~~~~~i~~~ 135 (326)
-+.++.+.++++..+.+..+.+. .+.. +..+-.+.. ..+ . .+||||+.+... .....++.+
T Consensus 14 ~~~~~~~gi~~~~~~~g~~v~~~--~~~~--------~~~~~~~~i~~~~~~~~~vdgiIi~~~~~-----~~~~~~~~~ 78 (305)
T cd06324 14 FWNSVARFMQAAADDLGIELEVL--YAER--------DRFLMLQQARTILQRPDKPDALIFTNEKS-----VAPELLRLA 78 (305)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEE--eCCC--------CHHHHHHHHHHHHHhccCCCEEEEcCCcc-----chHHHHHHH
Confidence 35667778887776655444433 3211 011000111 223 3 799999975421 122456666
Q ss_pred HHcCCCEEEE
Q psy17159 136 RENNKPFLGI 145 (326)
Q Consensus 136 ~~~~~PvLGI 145 (326)
.+.++|+.-+
T Consensus 79 ~~~giPvV~~ 88 (305)
T cd06324 79 EGAGVKLFLV 88 (305)
T ss_pred HhCCCeEEEE
Confidence 6778887755
No 346
>PF02575 YbaB_DNA_bd: YbaB/EbfC DNA-binding family; InterPro: IPR004401 The function of this protein is unknown. It is restricted to bacteria and a few plants, such as Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A crystal structure of one member, YbaB from Haemophilus influenzae, revealed a core structure consisting of two layers, alpha/beta; YbaB forms a tight dimer with a 3-layer structure, beta/alpha/beta []. YbaB is co-transcribed with RecR, which appears to protect DNA strands of the replilcation fork when it is blocked by DNA damage. A deletion of the YbaB operon resulted in increased sensitivity to DNA-damaging agents compared with the wild-type strain.; PDB: 1PUG_B 3F42_B 1YBX_B 1J8B_A.
Probab=20.18 E-value=1.9e+02 Score=21.70 Aligned_cols=49 Identities=20% Similarity=0.314 Sum_probs=32.9
Q ss_pred CeEEEEEcCCCCeEEEEEECCCCeEEEEcccCCCcCCCCCCChHHHHHHHHHH
Q psy17159 247 GFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPEYLSRPLRPSPPFLGLILAAA 299 (326)
Q Consensus 247 gl~v~a~~~dg~~veaie~~~~~~~~GvQFHPE~~~~~~~~~~lf~~Fl~~a~ 299 (326)
..++.+++.+|. |...-..+... ..+.|+|+.... .++ ..+...+..+.
T Consensus 20 ~~~~~~~s~~g~-V~V~v~g~g~v-~~i~i~~~~~~~-~~~-~~L~~~I~~A~ 68 (93)
T PF02575_consen 20 EIEVTGTSGDGL-VTVTVNGNGEV-VDIEIDPSALRP-LDP-EELEDLIVEAV 68 (93)
T ss_dssp HSEEEEEETCCT-EEEEEETTS-E-EEEEE-GGGGCT-S-H-HHHHHHHHHHH
T ss_pred cCEEEEEECCCE-EEEEEecCceE-EEEEEehHhhcc-CCH-HHHHHHHHHHH
Confidence 467889999998 77776666665 999999998852 223 45666665554
No 347
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=20.05 E-value=7e+02 Score=23.82 Aligned_cols=60 Identities=12% Similarity=0.022 Sum_probs=33.9
Q ss_pred HHHHHHHhhcCCCCCCCeeeCCCCCcccccch----------hhhhcCCCceEEEEEcccCCCchhHHHHHHHHHHHh
Q psy17159 5 ESVRAKISMFCHVTPENVIFNPDVKPIYKVRM----------LRIDRLNKTVTIGLVGKYTKFEDCYASLTRALEHAS 72 (326)
Q Consensus 5 ~~~~~ki~~~~~~~~~~v~~~~~~~~~y~~p~----------~~~~~~~~~~~I~iigdyg~~~~~~~Si~~aL~~~g 72 (326)
....+.+|.+++|| |||.-+ -.+-|. ..+...-++++|++|||-.. +.-+|...++...|
T Consensus 112 ~~~~~~~a~~~~vP---VINa~~---~~~HPtQaL~Dl~Ti~e~~g~~l~gl~ia~vGD~~~--~v~~Sl~~~~~~~g 181 (334)
T PRK01713 112 QSIVNELAEYAGVP---VFNGLT---DEFHPTQMLADVLTMIENCDKPLSEISYVYIGDARN--NMGNSLLLIGAKLG 181 (334)
T ss_pred hHHHHHHHHhCCCC---EEECCC---CCCChHHHHHHHHHHHHHcCCCcCCcEEEEECCCcc--CHHHHHHHHHHHcC
Confidence 35667788888884 777743 136665 11111134589999998421 23445554444443
No 348
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=20.04 E-value=3.2e+02 Score=22.91 Aligned_cols=30 Identities=13% Similarity=0.179 Sum_probs=21.6
Q ss_pred cCCCchhHHHHHHHHHHHhhhcCCceEEEEee
Q psy17159 54 YTKFEDCYASLTRALEHASYHSNRHLQLKYFD 85 (326)
Q Consensus 54 yg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~ 85 (326)
||. .++..+...++..+...+.++++..-+
T Consensus 21 YG~--~tl~di~~~~~~~a~~~g~~v~~~QSN 50 (141)
T TIGR01088 21 YGS--QTLEEIVEIIETFAAQLNVELEFFQSN 50 (141)
T ss_pred CCC--CCHHHHHHHHHHHHHHcCCEEEEEeeC
Confidence 776 678899999998888776555554443
No 349
>PLN02527 aspartate carbamoyltransferase
Probab=20.04 E-value=6.2e+02 Score=23.82 Aligned_cols=59 Identities=20% Similarity=0.204 Sum_probs=34.2
Q ss_pred HHHHHHhhcCCCCCCCeeeCCCCCcccccch----------hhhhcCCCceEEEEEcccCCCchhHHHHHHHHHHH
Q psy17159 6 SVRAKISMFCHVTPENVIFNPDVKPIYKVRM----------LRIDRLNKTVTIGLVGKYTKFEDCYASLTRALEHA 71 (326)
Q Consensus 6 ~~~~ki~~~~~~~~~~v~~~~~~~~~y~~p~----------~~~~~~~~~~~I~iigdyg~~~~~~~Si~~aL~~~ 71 (326)
...+.+|.++.|| |||.-|.. .+.|. .++.. -+.+||+++||... .-.-+|.+.++...
T Consensus 108 ~~~~~~a~~~~vP---VINa~~g~--~~HPtQ~LaDl~Ti~e~~g~-l~g~kva~vGD~~~-~rv~~Sl~~~~~~~ 176 (306)
T PLN02527 108 GAARRAAATAEIP---VINAGDGP--GQHPTQALLDVYTIQREIGR-LDGIKVGLVGDLAN-GRTVRSLAYLLAKY 176 (306)
T ss_pred hHHHHHHHhCCCC---EEECCCCC--CCChHHHHHHHHHHHHHhCC-cCCCEEEEECCCCC-ChhHHHHHHHHHhc
Confidence 4566778888885 88886522 23443 22222 34589999999631 01345555555443
Done!