Query psy17159
Match_columns 326
No_of_seqs 274 out of 2458
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 23:25:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17159.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17159hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nva_A CTP synthase; rossman f 100.0 9.1E-59 3.1E-63 455.0 25.6 282 4-300 219-534 (535)
2 1s1m_A CTP synthase; CTP synth 100.0 3.3E-49 1.1E-53 392.9 22.8 282 4-302 217-540 (545)
3 1vco_A CTP synthetase; tetrame 100.0 7.2E-49 2.5E-53 390.9 21.5 283 4-302 228-547 (550)
4 2v4u_A CTP synthase 2; pyrimid 100.0 5.1E-45 1.7E-49 339.7 21.4 268 37-309 17-285 (289)
5 2w7t_A CTP synthetase, putativ 100.0 1.3E-43 4.4E-48 327.7 17.9 249 46-306 9-262 (273)
6 1a9x_B Carbamoyl phosphate syn 100.0 5.9E-30 2E-34 245.3 20.6 225 3-301 138-376 (379)
7 3fij_A LIN1909 protein; 11172J 100.0 8E-29 2.7E-33 226.4 18.4 211 46-303 5-245 (254)
8 2a9v_A GMP synthase; structura 100.0 2.4E-28 8.2E-33 217.5 15.7 191 43-302 11-203 (212)
9 4gud_A Imidazole glycerol phos 100.0 6.5E-30 2.2E-34 226.8 5.4 191 47-300 4-206 (211)
10 1wl8_A GMP synthase [glutamine 100.0 8.5E-28 2.9E-32 209.8 15.6 184 46-299 1-187 (189)
11 1qdl_B Protein (anthranilate s 99.9 4.5E-27 1.5E-31 206.4 14.6 181 48-296 4-193 (195)
12 2vpi_A GMP synthase; guanine m 99.9 6.1E-28 2.1E-32 215.8 9.1 184 46-299 25-211 (218)
13 3uow_A GMP synthetase; structu 99.9 4.8E-26 1.6E-30 228.9 14.3 210 46-299 8-230 (556)
14 3tqi_A GMP synthase [glutamine 99.9 2E-26 6.8E-31 230.7 10.8 188 46-299 11-205 (527)
15 1i1q_B Anthranilate synthase c 99.9 1.4E-25 4.7E-30 196.4 14.0 144 110-299 47-190 (192)
16 1gpm_A GMP synthetase, XMP ami 99.9 2.9E-26 1E-30 229.4 9.8 185 46-299 8-202 (525)
17 3r75_A Anthranilate/para-amino 99.9 8.2E-26 2.8E-30 230.2 12.4 183 45-302 446-637 (645)
18 2ywj_A Glutamine amidotransfer 99.9 9.8E-26 3.3E-30 196.1 10.0 178 46-300 1-185 (186)
19 1o1y_A Conserved hypothetical 99.9 2E-24 7E-29 195.5 18.7 187 41-299 8-201 (239)
20 2ywb_A GMP synthase [glutamine 99.9 7.6E-26 2.6E-30 225.4 9.7 183 47-299 1-185 (503)
21 1gpw_B Amidotransferase HISH; 99.9 1.1E-25 3.6E-30 198.2 7.1 188 46-301 1-200 (201)
22 3d54_D Phosphoribosylformylgly 99.9 4E-24 1.4E-28 189.3 16.3 186 46-298 3-211 (213)
23 1l9x_A Gamma-glutamyl hydrolas 99.9 2.2E-24 7.4E-29 202.9 9.9 207 45-302 30-280 (315)
24 3m3p_A Glutamine amido transfe 99.9 7.4E-23 2.5E-27 186.3 18.3 183 46-298 4-191 (250)
25 2nv0_A Glutamine amidotransfer 99.9 1.7E-23 5.8E-28 183.4 12.3 182 46-302 2-191 (196)
26 1q7r_A Predicted amidotransfer 99.9 6.1E-24 2.1E-28 189.8 9.0 184 44-302 22-213 (219)
27 3l7n_A Putative uncharacterize 99.9 1.4E-22 4.9E-27 182.9 16.6 186 46-301 1-197 (236)
28 2vxo_A GMP synthase [glutamine 99.9 1.5E-23 5E-28 215.2 10.5 180 46-295 30-211 (697)
29 2iss_D Glutamine amidotransfer 99.9 1.5E-23 5.2E-28 185.7 9.3 182 43-298 18-207 (208)
30 1ka9_H Imidazole glycerol phos 99.9 1.8E-23 6E-28 184.0 8.5 183 46-298 3-200 (200)
31 2ywd_A Glutamine amidotransfer 99.9 4.3E-23 1.5E-27 179.8 9.1 177 46-298 3-189 (191)
32 2abw_A PDX2 protein, glutamina 99.9 1.4E-21 4.9E-26 175.1 10.4 197 45-302 3-217 (227)
33 1jvn_A Glutamine, bifunctional 99.8 8E-21 2.7E-25 191.1 1.6 197 45-298 4-215 (555)
34 2vdj_A Homoserine O-succinyltr 99.7 6.3E-16 2.2E-20 143.7 16.0 196 44-282 34-240 (301)
35 2h2w_A Homoserine O-succinyltr 99.7 1.4E-15 4.9E-20 141.7 15.8 195 44-282 46-251 (312)
36 3ugj_A Phosphoribosylformylgly 99.3 1.1E-11 3.6E-16 134.2 15.4 195 44-283 1046-1274(1303)
37 3l4e_A Uncharacterized peptida 98.8 9.7E-10 3.3E-14 96.8 2.3 94 44-154 26-128 (206)
38 1fy2_A Aspartyl dipeptidase; s 98.7 3.2E-09 1.1E-13 94.9 3.0 91 44-155 30-129 (229)
39 1oi4_A Hypothetical protein YH 98.1 1.4E-05 4.8E-10 69.0 10.0 102 44-155 22-134 (193)
40 3l18_A Intracellular protease 97.8 0.0001 3.5E-09 61.7 9.5 46 110-155 63-111 (168)
41 3er6_A Putative transcriptiona 97.4 0.0011 3.7E-08 57.8 10.6 111 43-155 6-124 (209)
42 4hcj_A THIJ/PFPI domain protei 97.4 0.00015 5.2E-09 61.9 4.8 47 109-155 68-117 (177)
43 3gra_A Transcriptional regulat 97.4 0.0016 5.3E-08 56.5 11.3 106 45-155 5-117 (202)
44 3l3b_A ES1 family protein; ssg 97.1 0.00043 1.5E-08 62.0 4.8 48 109-156 106-168 (242)
45 3ej6_A Catalase-3; heme, hydro 97.1 0.002 6.8E-08 65.4 10.1 99 44-155 536-646 (688)
46 2vrn_A Protease I, DR1199; cys 97.0 0.00048 1.7E-08 58.7 4.0 47 109-155 74-124 (190)
47 2fex_A Conserved hypothetical 96.9 0.00061 2.1E-08 58.1 4.0 46 110-155 63-110 (188)
48 1vhq_A Enhancing lycopene bios 96.9 0.00044 1.5E-08 61.2 2.9 47 109-155 89-149 (232)
49 3cne_A Putative protease I; st 96.9 0.00074 2.5E-08 56.8 4.2 47 109-155 65-120 (175)
50 3f5d_A Protein YDEA; unknow pr 96.8 0.0017 5.7E-08 56.6 6.2 47 109-155 62-109 (206)
51 2rk3_A Protein DJ-1; parkinson 96.8 0.00048 1.7E-08 59.2 2.5 100 46-155 4-115 (197)
52 3efe_A THIJ/PFPI family protei 96.8 0.0016 5.6E-08 56.7 5.7 46 110-155 74-121 (212)
53 3ttv_A Catalase HPII; heme ori 96.7 0.0043 1.5E-07 63.5 9.0 100 45-155 600-708 (753)
54 2iuf_A Catalase; oxidoreductas 96.7 0.019 6.6E-07 58.4 13.7 47 109-155 582-648 (688)
55 3fse_A Two-domain protein cont 96.6 0.0058 2E-07 57.9 8.8 102 44-155 9-121 (365)
56 3ewn_A THIJ/PFPI family protei 96.6 0.0071 2.4E-07 54.3 8.8 46 110-155 84-133 (253)
57 1u9c_A APC35852; structural ge 96.5 0.0016 5.6E-08 56.9 4.1 47 109-155 88-138 (224)
58 3noq_A THIJ/PFPI family protei 96.5 0.0026 8.9E-08 56.3 4.9 49 107-155 62-113 (231)
59 2ab0_A YAJL; DJ-1/THIJ superfa 96.4 0.00087 3E-08 58.1 1.4 47 109-155 65-116 (205)
60 3en0_A Cyanophycinase; serine 96.3 0.003 1E-07 58.1 4.6 97 45-154 56-160 (291)
61 4e08_A DJ-1 beta; flavodoxin-l 96.2 0.0017 5.7E-08 55.4 2.3 47 109-155 66-116 (190)
62 3n7t_A Macrophage binding prot 96.2 0.0019 6.4E-08 58.0 2.6 47 109-155 104-154 (247)
63 3mgk_A Intracellular protease/ 96.2 0.002 7E-08 56.1 2.8 48 108-155 63-113 (211)
64 1rw7_A YDR533CP; alpha-beta sa 96.2 0.0016 5.4E-08 58.1 2.0 48 109-156 97-148 (243)
65 3kkl_A Probable chaperone prot 96.1 0.0021 7.2E-08 57.5 2.5 47 109-155 97-147 (244)
66 4gdh_A DJ-1, uncharacterized p 96.1 0.0098 3.3E-07 51.0 6.5 45 108-152 71-120 (194)
67 3uk7_A Class I glutamine amido 95.9 0.0064 2.2E-07 57.9 4.7 47 109-155 281-330 (396)
68 1n57_A Chaperone HSP31, protei 95.8 0.0028 9.7E-08 58.1 1.7 49 108-156 143-195 (291)
69 3uk7_A Class I glutamine amido 95.6 0.0085 2.9E-07 57.1 4.4 47 109-155 88-137 (396)
70 3ot1_A 4-methyl-5(B-hydroxyeth 95.4 0.0041 1.4E-07 53.9 1.4 100 46-155 10-121 (208)
71 1sy7_A Catalase 1; heme oxidat 95.2 0.035 1.2E-06 56.9 7.5 103 45-157 534-646 (715)
72 3bhn_A THIJ/PFPI domain protei 92.9 0.025 8.6E-07 50.2 0.9 47 107-155 77-128 (236)
73 1z0s_A Probable inorganic poly 89.4 0.24 8.3E-06 44.9 3.6 89 24-149 13-101 (278)
74 1eiw_A Hypothetical protein MT 79.9 1.1 3.7E-05 34.8 2.8 39 107-145 35-73 (111)
75 3hly_A Flavodoxin-like domain; 79.6 4.1 0.00014 33.1 6.5 59 46-118 1-59 (161)
76 4e5v_A Putative THUA-like prot 78.5 16 0.00056 32.7 10.7 93 44-149 3-96 (281)
77 3kbq_A Protein TA0487; structu 77.5 6.7 0.00023 32.7 7.2 49 107-157 59-107 (172)
78 1u0t_A Inorganic polyphosphate 75.3 3.7 0.00013 37.3 5.5 36 108-148 73-108 (307)
79 3rfq_A Pterin-4-alpha-carbinol 71.0 6.6 0.00023 33.1 5.6 80 43-135 28-114 (185)
80 2gk3_A Putative cytoplasmic pr 70.2 2.7 9.2E-05 37.2 3.1 40 106-145 73-124 (256)
81 3f6r_A Flavodoxin; FMN binding 70.2 9.7 0.00033 29.9 6.3 55 46-118 2-57 (148)
82 3fni_A Putative diflavin flavo 70.0 5.4 0.00018 32.4 4.7 60 45-118 4-64 (159)
83 3gbv_A Putative LACI-family tr 69.7 28 0.00097 30.0 9.9 92 43-146 6-101 (304)
84 3l6u_A ABC-type sugar transpor 69.5 27 0.00094 30.0 9.7 88 44-146 7-96 (293)
85 2fz5_A Flavodoxin; alpha/beta 69.5 18 0.0006 27.6 7.6 53 48-118 2-54 (137)
86 3g1w_A Sugar ABC transporter; 69.4 24 0.00081 30.7 9.3 88 45-146 4-93 (305)
87 3pfn_A NAD kinase; structural 69.4 13 0.00046 34.7 7.9 36 109-149 107-142 (365)
88 3l49_A ABC sugar (ribose) tran 69.3 24 0.00083 30.4 9.3 88 44-146 4-93 (291)
89 5nul_A Flavodoxin; electron tr 68.6 15 0.00052 28.3 7.1 49 54-118 5-53 (138)
90 2pjk_A 178AA long hypothetical 65.6 3.2 0.00011 34.7 2.5 29 107-135 76-106 (178)
91 1f4p_A Flavodoxin; electron tr 64.5 13 0.00046 28.9 6.0 55 46-118 1-56 (147)
92 3ksm_A ABC-type sugar transpor 64.3 27 0.00093 29.6 8.5 88 46-146 1-91 (276)
93 3jy6_A Transcriptional regulat 63.8 43 0.0015 28.6 9.8 86 44-147 6-93 (276)
94 3rot_A ABC sugar transporter, 62.9 36 0.0012 29.5 9.2 89 45-146 3-93 (297)
95 2ark_A Flavodoxin; FMN, struct 61.7 11 0.00039 31.0 5.3 56 45-118 4-60 (188)
96 1ydg_A Trp repressor binding p 61.2 17 0.00059 30.3 6.5 40 44-85 5-44 (211)
97 2r47_A Uncharacterized protein 61.2 1.7 5.7E-05 35.7 -0.1 99 45-155 26-131 (157)
98 2q9u_A A-type flavoprotein; fl 61.0 28 0.00097 32.2 8.5 60 45-118 256-315 (414)
99 3cs3_A Sugar-binding transcrip 60.6 43 0.0015 28.6 9.2 82 43-146 6-87 (277)
100 2i2c_A Probable inorganic poly 60.5 12 0.00041 33.2 5.5 36 109-149 34-71 (272)
101 3nbm_A PTS system, lactose-spe 60.3 49 0.0017 25.0 8.3 79 44-146 5-85 (108)
102 1mkz_A Molybdenum cofactor bio 60.0 7 0.00024 32.4 3.6 25 110-134 69-93 (172)
103 3m9w_A D-xylose-binding peripl 58.7 29 0.00098 30.4 7.8 85 46-145 3-89 (313)
104 1t0b_A THUA-like protein; treh 58.6 31 0.0011 30.3 7.8 43 106-148 63-106 (252)
105 3k4h_A Putative transcriptiona 58.5 47 0.0016 28.5 9.1 85 44-145 7-98 (292)
106 3o74_A Fructose transport syst 58.3 81 0.0028 26.5 10.5 85 46-146 3-89 (272)
107 3qk7_A Transcriptional regulat 58.3 59 0.002 28.1 9.8 85 44-147 5-96 (294)
108 3uug_A Multiple sugar-binding 58.0 52 0.0018 28.8 9.4 87 45-146 3-91 (330)
109 2fzv_A Putative arsenical resi 57.8 18 0.0006 32.5 6.1 73 43-117 56-130 (279)
110 8abp_A L-arabinose-binding pro 57.6 55 0.0019 28.2 9.4 86 45-146 2-89 (306)
111 2rgy_A Transcriptional regulat 56.4 71 0.0024 27.4 9.9 87 44-147 7-98 (290)
112 3bbl_A Regulatory protein of L 56.4 47 0.0016 28.6 8.7 86 44-146 3-94 (287)
113 1uuy_A CNX1, molybdopterin bio 56.0 28 0.00095 28.4 6.7 32 110-141 71-102 (167)
114 3bch_A 40S ribosomal protein S 55.6 29 0.001 30.6 7.0 33 108-146 149-181 (253)
115 2ohh_A Type A flavoprotein FPR 55.5 16 0.00055 33.7 5.7 61 44-118 255-315 (404)
116 3tb6_A Arabinose metabolism tr 55.3 82 0.0028 26.8 10.1 89 46-146 16-106 (298)
117 3b6i_A Flavoprotein WRBA; flav 55.3 27 0.00094 28.5 6.6 38 46-85 2-40 (198)
118 2an1_A Putative kinase; struct 55.2 15 0.0005 32.8 5.2 36 109-149 62-97 (292)
119 3pzy_A MOG; ssgcid, seattle st 55.1 5.1 0.00018 33.0 1.9 32 110-141 66-97 (164)
120 2a5l_A Trp repressor binding p 54.5 21 0.0007 29.3 5.7 67 46-118 6-79 (200)
121 1vi6_A 30S ribosomal protein S 54.1 19 0.00066 30.9 5.4 34 107-146 112-145 (208)
122 2fep_A Catabolite control prot 53.8 93 0.0032 26.7 10.3 86 44-146 15-102 (289)
123 1di6_A MOGA, molybdenum cofact 53.6 9.9 0.00034 32.2 3.5 32 110-141 66-97 (195)
124 3gv0_A Transcriptional regulat 53.5 60 0.0021 27.9 8.9 86 44-146 7-96 (288)
125 2zki_A 199AA long hypothetical 53.5 16 0.00055 30.1 4.8 69 45-118 4-78 (199)
126 1e5d_A Rubredoxin\:oxygen oxid 52.7 55 0.0019 29.9 9.0 60 45-118 252-311 (402)
127 3u5c_A 40S ribosomal protein S 52.5 44 0.0015 29.5 7.6 34 107-146 114-147 (252)
128 2fvy_A D-galactose-binding per 51.9 1.1E+02 0.0037 26.3 10.4 88 46-147 3-92 (309)
129 1y5e_A Molybdenum cofactor bio 50.8 10 0.00035 31.1 3.1 29 107-135 67-97 (169)
130 3kke_A LACI family transcripti 50.5 86 0.0029 27.1 9.5 86 44-146 14-101 (303)
131 3h75_A Periplasmic sugar-bindi 50.3 48 0.0016 29.5 7.9 86 46-147 4-94 (350)
132 2g2c_A Putative molybdenum cof 49.1 22 0.00076 29.0 5.0 32 110-141 69-100 (167)
133 3iz6_A 40S ribosomal protein S 49.0 45 0.0015 30.3 7.2 33 108-146 120-152 (305)
134 3egc_A Putative ribose operon 48.7 41 0.0014 29.0 7.0 85 44-145 7-93 (291)
135 2q62_A ARSH; alpha/beta, flavo 48.0 31 0.001 30.2 6.0 72 43-117 32-105 (247)
136 3e61_A Putative transcriptiona 47.8 63 0.0021 27.4 8.0 83 44-145 7-92 (277)
137 1jx6_A LUXP protein; protein-l 47.4 1.4E+02 0.005 26.0 10.7 91 43-145 41-134 (342)
138 2x7x_A Sensor protein; transfe 47.3 1E+02 0.0036 26.9 9.7 87 44-146 5-94 (325)
139 2zkq_b 40S ribosomal protein S 47.2 37 0.0013 30.7 6.4 33 108-146 116-148 (295)
140 3huu_A Transcription regulator 46.7 61 0.0021 28.1 7.9 86 44-146 21-113 (305)
141 3clk_A Transcription regulator 46.4 69 0.0023 27.5 8.1 86 44-146 7-95 (290)
142 3d02_A Putative LACI-type tran 46.3 99 0.0034 26.5 9.2 89 45-147 4-94 (303)
143 2h3h_A Sugar ABC transporter, 46.3 91 0.0031 27.0 9.0 86 46-146 2-89 (313)
144 4fyk_A Deoxyribonucleoside 5'- 45.9 50 0.0017 26.8 6.5 94 46-147 3-102 (152)
145 2fn9_A Ribose ABC transporter, 45.6 1.3E+02 0.0045 25.5 9.9 84 47-146 4-90 (290)
146 1ykg_A SIR-FP, sulfite reducta 45.1 29 0.00099 27.9 5.1 56 45-118 9-64 (167)
147 3d8u_A PURR transcriptional re 44.0 89 0.003 26.3 8.4 85 45-146 3-89 (275)
148 1jlj_A Gephyrin; globular alph 44.0 10 0.00035 31.9 2.1 27 110-136 78-104 (189)
149 1czn_A Flavodoxin; FMN binding 43.8 42 0.0014 26.7 5.9 53 47-118 2-54 (169)
150 3o1i_D Periplasmic protein TOR 42.7 44 0.0015 28.7 6.3 88 44-145 4-93 (304)
151 3rht_A (gatase1)-like protein; 42.5 60 0.0021 28.6 7.0 82 45-145 4-85 (259)
152 1ehs_A STB, heat-stable entero 42.4 3.7 0.00013 25.5 -0.7 16 142-157 32-47 (48)
153 3kjx_A Transcriptional regulat 42.3 1.1E+02 0.0038 27.0 9.0 85 44-145 67-153 (344)
154 4f2g_A Otcase 1, ornithine car 42.2 1.3E+02 0.0045 27.1 9.4 96 5-116 111-222 (309)
155 2pbq_A Molybdenum cofactor bio 41.9 11 0.00038 31.3 2.0 27 110-136 68-94 (178)
156 1obo_A Flavodoxin; electron tr 41.7 39 0.0013 26.8 5.4 53 46-118 2-54 (169)
157 4ep1_A Otcase, ornithine carba 41.3 95 0.0032 28.6 8.3 59 5-73 136-204 (340)
158 3hcw_A Maltose operon transcri 41.3 83 0.0028 27.1 7.9 86 43-146 5-98 (295)
159 2vk2_A YTFQ, ABC transporter p 41.2 1.1E+02 0.0039 26.3 8.8 86 46-146 3-90 (306)
160 2ef0_A Ornithine carbamoyltran 40.9 1.1E+02 0.0039 27.5 8.7 98 5-118 111-221 (301)
161 2iks_A DNA-binding transcripti 40.9 1.2E+02 0.004 26.0 8.8 88 43-146 18-107 (293)
162 3e3m_A Transcriptional regulat 40.6 1.2E+02 0.004 27.0 9.0 85 44-145 69-155 (355)
163 2rjo_A Twin-arginine transloca 40.6 94 0.0032 27.3 8.2 88 44-146 4-95 (332)
164 3hyn_A Putative signal transdu 40.5 19 0.00064 30.4 3.1 45 104-148 73-118 (189)
165 1o7j_A L-asparaginase; atomic 40.4 25 0.00086 32.2 4.3 35 110-145 241-276 (327)
166 3brq_A HTH-type transcriptiona 40.2 1E+02 0.0034 26.2 8.2 87 44-146 18-108 (296)
167 2o20_A Catabolite control prot 39.5 1.9E+02 0.0066 25.2 10.2 86 44-146 62-149 (332)
168 2is8_A Molybdopterin biosynthe 39.5 15 0.0005 30.0 2.3 26 110-135 62-87 (164)
169 3nxk_A Cytoplasmic L-asparagin 39.4 37 0.0013 31.2 5.3 35 110-145 245-280 (334)
170 3g85_A Transcriptional regulat 39.4 1.6E+02 0.0054 24.9 9.4 86 44-145 10-97 (289)
171 3h5o_A Transcriptional regulat 39.2 1.2E+02 0.0041 26.7 8.8 85 44-145 61-147 (339)
172 2wlt_A L-asparaginase; hydrola 38.8 27 0.00094 32.0 4.3 35 110-145 242-277 (332)
173 3c3k_A Alanine racemase; struc 38.8 1.8E+02 0.0061 24.6 9.9 85 44-146 7-93 (285)
174 3ff4_A Uncharacterized protein 38.2 43 0.0015 25.9 4.8 36 110-151 82-117 (122)
175 3brs_A Periplasmic binding pro 37.3 67 0.0023 27.4 6.5 89 45-146 5-97 (289)
176 1ycg_A Nitric oxide reductase; 36.7 1.2E+02 0.004 27.6 8.4 98 6-118 208-310 (398)
177 3tpf_A Otcase, ornithine carba 35.9 73 0.0025 28.9 6.6 59 5-73 102-171 (307)
178 2d6f_A Glutamyl-tRNA(Gln) amid 35.7 41 0.0014 32.1 5.1 35 110-145 325-360 (435)
179 2hsg_A Glucose-resistance amyl 35.3 96 0.0033 27.2 7.4 87 43-146 58-146 (332)
180 2hna_A Protein MIOC, flavodoxi 35.0 44 0.0015 26.0 4.5 33 46-80 2-34 (147)
181 3k9c_A Transcriptional regulat 34.9 84 0.0029 26.9 6.8 83 44-146 11-95 (289)
182 2ioy_A Periplasmic sugar-bindi 34.3 2.1E+02 0.0072 24.1 9.4 84 47-146 3-89 (283)
183 3gd5_A Otcase, ornithine carba 34.3 1.4E+02 0.0047 27.2 8.2 59 5-73 114-182 (323)
184 3bil_A Probable LACI-family tr 34.1 1.4E+02 0.0047 26.5 8.3 85 45-146 66-152 (348)
185 1tjy_A Sugar transport protein 33.9 1.7E+02 0.0058 25.4 8.8 87 46-146 4-92 (316)
186 3lkv_A Uncharacterized conserv 33.2 91 0.0031 27.4 6.8 67 43-118 6-77 (302)
187 2xzm_B RPS0E; ribosome, transl 31.4 48 0.0016 29.1 4.4 33 108-146 112-144 (241)
188 1zq1_A Glutamyl-tRNA(Gln) amid 31.4 40 0.0014 32.3 4.2 35 110-145 328-363 (438)
189 3r7f_A Aspartate carbamoyltran 31.2 62 0.0021 29.3 5.3 96 7-117 105-210 (304)
190 1ag9_A Flavodoxin; electron tr 31.2 60 0.002 26.2 4.8 53 46-118 1-53 (175)
191 1bvy_F Protein (cytochrome P45 30.7 70 0.0024 26.5 5.3 55 45-118 21-75 (191)
192 1dbq_A Purine repressor; trans 30.7 2.2E+02 0.0076 23.9 8.8 87 44-146 6-94 (289)
193 1t0i_A YLR011WP; FMN binding p 30.3 79 0.0027 25.5 5.5 15 104-118 78-92 (191)
194 1uf3_A Hypothetical protein TT 29.6 1.3E+02 0.0045 24.4 6.9 11 45-55 5-15 (228)
195 3lcm_A SMU.1420, putative oxid 29.6 1.2E+02 0.0039 25.0 6.5 15 103-117 66-80 (196)
196 2khz_A C-MYC-responsive protei 29.5 49 0.0017 26.9 4.0 42 104-148 71-112 (165)
197 3u7r_A NADPH-dependent FMN red 29.5 1.8E+02 0.0061 24.0 7.6 68 46-118 3-75 (190)
198 2m1z_A LMO0427 protein; homolo 29.4 1.3E+02 0.0043 22.8 6.0 62 46-119 3-66 (106)
199 2dri_A D-ribose-binding protei 29.2 2.2E+02 0.0075 23.8 8.5 84 47-146 3-89 (271)
200 3dbi_A Sugar-binding transcrip 28.6 2.9E+02 0.01 24.0 10.2 87 44-146 60-150 (338)
201 4ew6_A D-galactose-1-dehydroge 28.6 1.9E+02 0.0065 25.8 8.3 82 43-143 23-109 (330)
202 3sds_A Ornithine carbamoyltran 28.4 1.5E+02 0.0051 27.4 7.5 69 6-89 133-223 (353)
203 3u80_A 3-dehydroquinate dehydr 28.4 83 0.0028 25.5 5.0 77 54-144 26-104 (151)
204 1pfk_A Phosphofructokinase; tr 28.4 2.9E+02 0.0099 25.0 9.3 94 45-145 2-123 (320)
205 3hs3_A Ribose operon repressor 28.2 45 0.0015 28.6 3.8 65 43-118 8-75 (277)
206 3fhl_A Putative oxidoreductase 28.2 2E+02 0.0069 25.8 8.4 20 100-119 53-74 (362)
207 3lwz_A 3-dehydroquinate dehydr 28.0 85 0.0029 25.5 5.0 53 54-119 29-82 (153)
208 3j20_B 30S ribosomal protein S 27.7 55 0.0019 27.9 4.0 33 108-146 109-141 (202)
209 4ekn_B Aspartate carbamoyltran 27.6 1E+02 0.0035 27.8 6.1 59 6-75 108-176 (306)
210 1zxx_A 6-phosphofructokinase; 27.5 3.1E+02 0.01 24.8 9.3 94 45-145 1-122 (319)
211 2him_A L-asparaginase 1; hydro 27.5 45 0.0015 30.9 3.7 36 110-145 253-290 (358)
212 1sqs_A Conserved hypothetical 27.4 99 0.0034 26.2 5.8 16 103-118 72-87 (242)
213 1wsa_A Asparaginase, asparagin 27.4 44 0.0015 30.6 3.6 35 110-145 239-274 (330)
214 1nns_A L-asparaginase II; amid 27.2 44 0.0015 30.5 3.6 35 110-145 235-270 (326)
215 3grf_A Ornithine carbamoyltran 27.0 2.3E+02 0.0078 25.8 8.4 72 5-90 111-198 (328)
216 2a6a_A Hypothetical protein TM 26.9 53 0.0018 28.1 3.9 46 108-154 64-111 (218)
217 2bmv_A Flavodoxin; electron tr 25.5 1.1E+02 0.0037 24.1 5.4 51 46-118 2-52 (164)
218 3u3x_A Oxidoreductase; structu 25.3 47 0.0016 30.4 3.5 19 101-119 77-97 (361)
219 1ml4_A Aspartate transcarbamoy 25.3 99 0.0034 28.0 5.5 60 6-76 112-181 (308)
220 2qh8_A Uncharacterized protein 25.3 1.9E+02 0.0064 24.9 7.4 85 44-146 7-97 (302)
221 2wc1_A Flavodoxin; electron tr 25.1 35 0.0012 27.8 2.3 25 46-72 2-26 (182)
222 3hr4_A Nitric oxide synthase, 24.6 1.6E+02 0.0056 25.0 6.6 38 45-85 40-77 (219)
223 3ehd_A Uncharacterized conserv 24.6 88 0.003 25.5 4.6 47 101-148 60-106 (162)
224 1agx_A Glutaminase-asparaginas 24.3 52 0.0018 30.1 3.5 35 110-145 239-275 (331)
225 2h0a_A TTHA0807, transcription 24.0 1.4E+02 0.0048 25.0 6.2 71 60-146 13-85 (276)
226 2c4w_A 3-dehydroquinate dehydr 24.0 1.1E+02 0.0039 25.3 5.1 38 45-86 9-61 (176)
227 3gyb_A Transcriptional regulat 23.6 3.2E+02 0.011 22.7 8.6 41 44-85 4-44 (280)
228 3iwt_A 178AA long hypothetical 23.4 37 0.0013 27.8 2.1 25 109-133 80-104 (178)
229 3lkv_A Uncharacterized conserv 23.4 2.5E+02 0.0084 24.4 7.9 87 45-146 140-227 (302)
230 2ejw_A HDH, homoserine dehydro 23.1 2.6E+02 0.0089 25.3 8.0 94 45-148 3-100 (332)
231 4pga_A Glutaminase-asparaginas 23.0 53 0.0018 30.2 3.3 35 110-145 245-280 (337)
232 1yob_A Flavodoxin 2, flavodoxi 22.7 55 0.0019 26.5 3.1 53 47-118 2-54 (179)
233 1s3l_A Hypothetical protein MJ 22.3 2.4E+02 0.0081 22.9 7.1 24 45-71 25-48 (190)
234 1s2d_A Purine trans deoxyribos 21.7 3.2E+02 0.011 22.1 10.0 42 101-145 72-115 (167)
235 4amu_A Ornithine carbamoyltran 21.7 1.4E+02 0.0047 27.8 5.8 71 5-90 137-217 (365)
236 1pvv_A Otcase, ornithine carba 21.7 2.5E+02 0.0087 25.3 7.6 59 5-73 112-180 (315)
237 4dik_A Flavoprotein; TM0755, e 21.6 1.3E+02 0.0045 28.1 5.8 62 45-117 265-326 (410)
238 1yt5_A Inorganic polyphosphate 20.9 18 0.00061 31.8 -0.4 35 109-149 40-74 (258)
239 2qu7_A Putative transcriptiona 20.9 3.2E+02 0.011 22.9 7.9 66 43-120 6-73 (288)
240 1wls_A L-asparaginase; structu 20.5 85 0.0029 28.6 4.1 35 110-145 223-260 (328)
241 3jvd_A Transcriptional regulat 20.3 1.2E+02 0.0042 26.7 5.2 64 44-119 63-128 (333)
242 1gud_A ALBP, D-allose-binding 20.3 3.6E+02 0.012 22.7 8.2 87 47-146 3-91 (288)
243 2qh8_A Uncharacterized protein 20.2 3E+02 0.01 23.6 7.7 37 107-146 190-227 (302)
244 3d6n_B Aspartate carbamoyltran 20.1 1.5E+02 0.005 26.6 5.5 66 43-117 144-212 (291)
No 1
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=100.00 E-value=9.1e-59 Score=455.04 Aligned_cols=282 Identities=43% Similarity=0.718 Sum_probs=254.6
Q ss_pred cHHHHHHHhhcCCCCCCCeeeCCCCCcccccch-------------------------------hhhh--cCCCceEEEE
Q psy17159 4 TESVRAKISMFCHVTPENVIFNPDVKPIYKVRM-------------------------------LRID--RLNKTVTIGL 50 (326)
Q Consensus 4 ~~~~~~ki~~~~~~~~~~v~~~~~~~~~y~~p~-------------------------------~~~~--~~~~~~~I~i 50 (326)
.++.|+|||+||+|+.++||+.+|++++|++|+ +++. ++.++++||+
T Consensus 219 ~~~~r~KiaLfc~V~~~~VI~i~DvdtiY~vpl~L~~qGl~~~~~~~l~l~~~~~~~~~w~~~~~~~~~~~~~~~v~Ial 298 (535)
T 3nva_A 219 DDETRRKIALFTNVKVDHIVSSYDVETSYEVPIILESQKLVSKILSRLKLEDRQVDLTDWISFVNNIKGINSKKTINIAL 298 (535)
T ss_dssp CHHHHHHHHHHTTCCGGGEEEEECCSCGGGHHHHHHHHTHHHHHHHHTTCCCCCCCCHHHHHHHHHHHTTTCCCEEEEEE
T ss_pred CHHHHHhhhhhcCCChhceEecCCCChHHHhHHHHHHCCcHHHHHHHcCCCCCCCCHHHHHHHHHHhhccCCCCeeEEEE
Confidence 478999999999999999999999999999997 4555 6778899999
Q ss_pred EcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCCCchHHH
Q psy17159 51 VGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRGLEGKIA 130 (326)
Q Consensus 51 igdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~~~~~~~ 130 (326)
||+|..+.|+|.|+.+||+++|..++.+|++.|+++++++.... ++++.|+.+||||||||+|.+...+.+.
T Consensus 299 VGKY~~l~DaY~Sv~eAL~hag~~~~~~V~I~wIds~~l~~~~~--------~~~~~L~~~DgIIlpGG~G~~~~~g~i~ 370 (535)
T 3nva_A 299 VGKYTKLKDSYISIKEAIYHASAYIGVRPKLIWIESTDLESDTK--------NLNEILGNVNGIIVLPGFGSRGAEGKIK 370 (535)
T ss_dssp EESCTTSGGGGHHHHHHHHHHHHHTTCEEEEEEEEGGGGCCSSS--------CCTTTTTSCSEEEECCCCSSTTHHHHHH
T ss_pred EecCcCCchhHHHHHHHHHHHHHHcCCCeEEEEecchhcccccc--------chhhhccCCCEEEECCCCCCccHHHHHH
Confidence 99999999999999999999999999999999999987764321 1245789999999999999988888999
Q ss_pred HHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCC-CCCCcceeecceeEEEec
Q psy17159 131 ACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNP-GNMGGTMRLGKHETHFKP 209 (326)
Q Consensus 131 ~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~-~~~~~~~~lg~~~~~~~~ 209 (326)
+++++++.++|+||||+|||+|+.++|++++|+.++++.+|++. +++|++.+|+++.. ..+||+||+|.+.+.+.+
T Consensus 371 ~ir~a~~~~~PiLGIClG~Qll~va~Gg~v~g~qda~s~Ef~~~---~~~pvI~~m~eq~~~~~~ggtmrlg~h~v~l~~ 447 (535)
T 3nva_A 371 AIKYAREHNIPFLGICFGFQLSIVEFARDVLGLSEANSTEINPN---TKDPVITLLDEQKNVTQLGGTMRLGAQKIILKE 447 (535)
T ss_dssp HHHHHHHHTCCEEEETHHHHHHHHHHHHTTTCCTTCEETTTCTT---CSCEEEECBCSSSCBCSSCCCCEEEEEEEEECT
T ss_pred HHHHHHHcCCcEEEECcchhHHHHHhhccccCccCCcccccCCC---CCCCeeecchhcccccccCCccccCceEEEEcC
Confidence 99999999999999999999999999999999999999999876 67898888877643 567999999999999876
Q ss_pred CCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEcccCCCcCCCCCCCh
Q psy17159 210 EHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPEYLSRPLRPSP 289 (326)
Q Consensus 210 ~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFHPE~~~~~~~~~~ 289 (326)
+|+++++||.. .+.+||+|+|+||+.+.+.+++.||+++|+++||. +||+|++++||++|||||||+.+++..+++
T Consensus 448 --gS~L~~iyG~~-~I~erHrHryeVNs~h~q~l~~~GL~vsA~s~DG~-IEAIE~~~~pf~vGVQfHPE~~~~p~~~~~ 523 (535)
T 3nva_A 448 --GTIAYQLYGKK-VVYERHRHRYEVNPKYVDILEDAGLVVSGISENGL-VEIIELPSNKFFVATQAHPEFKSRPTNPSP 523 (535)
T ss_dssp --TSHHHHHHTSS-EEEEEEEECCEECHHHHHHHHHTTCEEEEECTTCC-EEEEECTTSSCEEEESSCGGGGCCSSSCCH
T ss_pred --CCcHHHHhCCC-eeeecccccceechHHHhhcccCCeEEEEEeCCCC-EEEEEeCCCCcEEEEEeCCEecCCCCChhH
Confidence 89999999975 78999999999999988888788999999999997 999999999988999999999998877899
Q ss_pred HHHHHHHHHHh
Q psy17159 290 PFLGLILAAAG 300 (326)
Q Consensus 290 lf~~Fl~~a~~ 300 (326)
||.+|+++|.+
T Consensus 524 LF~~Fv~Aa~~ 534 (535)
T 3nva_A 524 IYLGFIRAVAS 534 (535)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHh
Confidence 99999999853
No 2
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=100.00 E-value=3.3e-49 Score=392.92 Aligned_cols=282 Identities=39% Similarity=0.679 Sum_probs=237.0
Q ss_pred cHHHHHHHhhcCCCCCCCeeeCCCCCcccccch-------------------------------hhhhcCCCceEEEEEc
Q psy17159 4 TESVRAKISMFCHVTPENVIFNPDVKPIYKVRM-------------------------------LRIDRLNKTVTIGLVG 52 (326)
Q Consensus 4 ~~~~~~ki~~~~~~~~~~v~~~~~~~~~y~~p~-------------------------------~~~~~~~~~~~I~iig 52 (326)
..+.|+|||+||+|+.++|+...|+.++|++|. +++.++...++|+++|
T Consensus 217 ~~~~r~kisL~~~v~~~~Vi~~~dvdt~y~lp~~lr~~G~~~~ii~~~~l~~~~~~l~~w~~lv~~v~~~~~~v~i~~vG 296 (545)
T 1s1m_A 217 PANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVG 296 (545)
T ss_dssp CHHHHHHHHHTTCCCSSCEEEEECCSCGGGHHHHHHHTTHHHHHHHHTTCCCCCCCCHHHHHHHHHHHCCSEEEEEEEEE
T ss_pred CchhhccCChhhCccccCceecCCCChHHHHHHHHHHcCChhhhhhhCCCCchhHHHHHHHHHHHhccCCCCeEEeCCcC
Confidence 468999999999999999999999999999997 1223445568999999
Q ss_pred ccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCCCchHHHHH
Q psy17159 53 KYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRGLEGKIAAC 132 (326)
Q Consensus 53 dyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~~~~~~~~i 132 (326)
+|..+.|+|.|+.++|+++|+.++.+|.+.|+++++++.. .++.+..+||||||||||.+...+.+.++
T Consensus 297 kyv~l~D~y~Si~~aL~~~G~~~~~~V~i~~~d~e~i~~~-----------~~~~l~~~DGIilsGGpg~~~~~g~~~~i 365 (545)
T 1s1m_A 297 KYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETR-----------GVEILKGLDAILVPGGFGYRGVEGMITTA 365 (545)
T ss_dssp SSCSSGGGGHHHHHHHHHHHHHHTEEEEEEEEEHHHHHHH-----------CTTTTTTCSEEEECCCCSSTTHHHHHHHH
T ss_pred CeEEEEEHHHHHHHHHHHhCcccCCeEEEccCCHHHhhhh-----------hhhhhhcCCEEEECCCCCCccchhhHHHH
Confidence 9999999999999999999998888899999986543210 11246789999999999998777888999
Q ss_pred HHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeecc----------CCC-CCCCCCcceeec
Q psy17159 133 KWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYM----------PEH-NPGNMGGTMRLG 201 (326)
Q Consensus 133 ~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~----------~~~-~~~~~~~~~~lg 201 (326)
+++++.++|+||||+|||+|+.++|+++.++.++++.+|++. .++|++..+ +++ .....+++||+|
T Consensus 366 ~~a~~~~~PiLGIClG~Qll~va~Gg~v~~l~~a~s~E~~~~---~~hpvi~l~~~w~~~~g~~~~q~~~~~~ggtmrlG 442 (545)
T 1s1m_A 366 RFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPD---CKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLG 442 (545)
T ss_dssp HHHHHTTCCEEEETHHHHHHHHHHHHHHHCCTTCEETTTCSS---CSCEEEECTTTCCCTTSCCC----------CCEEE
T ss_pred HHHHHCCCcEEEECChHHHHHHHhCCceecCCCCcccccCCC---CCCceEEeecccccccccccccccccccCcccccc
Confidence 999999999999999999999999999999998988888665 677866555 211 113357899999
Q ss_pred ceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEcccCCCc
Q psy17159 202 KHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPEYL 281 (326)
Q Consensus 202 ~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFHPE~~ 281 (326)
.+.+.+.+ ++++..+|+.. .+.++|+|+|.||+.++..+.+.+++++|+++||..+|+++++++||++|||||||+.
T Consensus 443 ~~~v~l~~--~s~l~~iyg~~-~v~e~h~Hry~VNs~~~~~l~~~gl~v~a~s~dg~~VEaie~~~~p~flGVQFHPE~~ 519 (545)
T 1s1m_A 443 AQQCQLVD--DSLVRQLYNAP-TIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFT 519 (545)
T ss_dssp EEEEEECT--TCHHHHHTTSS-EEEEEEEECCEECHHHHHHHHHTTCEEEEECSSSCCEEEEECTTSSSEEEESSCGGGT
T ss_pred ceeeEecc--CCHHHHhcCCc-eEEEecCcceEEChHHhhhcccCCeEEEEECCCCCceEEEEeCCCCEEEEEeCCCCCC
Confidence 99998865 89999999875 6789999999999998887755899999999998459999999999967999999999
Q ss_pred CCCCCCChHHHHHHHHHHhhh
Q psy17159 282 SRPLRPSPPFLGLILAAAGKL 302 (326)
Q Consensus 282 ~~~~~~~~lf~~Fl~~a~~~~ 302 (326)
+++.++++||.+|+++|.+++
T Consensus 520 ~~p~~g~~LF~~Fv~aa~~~~ 540 (545)
T 1s1m_A 520 STPRDGHPLFAGFVKAASEFQ 540 (545)
T ss_dssp CCTTTCCHHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHH
Confidence 999878999999999997755
No 3
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=100.00 E-value=7.2e-49 Score=390.85 Aligned_cols=283 Identities=45% Similarity=0.796 Sum_probs=236.5
Q ss_pred cHHHHHHHhhcCCCCCCCeeeCCCCCcccccch-------------------------------hhhhcCCCceEEEEEc
Q psy17159 4 TESVRAKISMFCHVTPENVIFNPDVKPIYKVRM-------------------------------LRIDRLNKTVTIGLVG 52 (326)
Q Consensus 4 ~~~~~~ki~~~~~~~~~~v~~~~~~~~~y~~p~-------------------------------~~~~~~~~~~~I~iig 52 (326)
.++.|+|+|+||+|+.++|+...|+.++|++|. +++.++..+++|+++|
T Consensus 228 ~~~~r~k~sL~~~v~~~~Vi~~~dvdt~y~lp~~lr~~G~~~~v~~~~~l~~~~~~l~~w~~~~~~~~~~~~~v~I~ivg 307 (550)
T 1vco_A 228 PEEVRRKVALFTNVRPGHVFSSPTVEHLYEVPLLLEEQGLGRAVERALGLEAVIPNLSFWQEAVRVLKHPERTVKIAIAG 307 (550)
T ss_dssp CHHHHHHHHHHHTCCGGGEEEEECCSCTTHHHHHHHHHTHHHHHHHHTTCCCCCCCCHHHHHHHHHHHSCSEEEEEEEEE
T ss_pred CcchhcccchhcCCCccCeeecCCCChHHHHHHHHHHcCChhhhHhhCCCCchhHHHHHhHHHHHhhcCCCCceEEcccC
Confidence 468999999999999999999999999999996 1222445668999999
Q ss_pred ccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCCCchHHHHH
Q psy17159 53 KYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRGLEGKIAAC 132 (326)
Q Consensus 53 dyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~~~~~~~~i 132 (326)
+|..+.|+|.|+.++|.+++...+.++.+.|+++..+++. + .++.+..+||||||||||.+...+.+.++
T Consensus 308 kyv~l~D~y~Sv~~aL~~~g~~~g~~v~I~~~d~~~~~~~----~------~~~~L~~~DGIILpGGfGd~~~~g~i~~i 377 (550)
T 1vco_A 308 KYVKMPDAYLSLLEALRHAGIKNRARVEVKWVDAESLEAA----D------LEEAFRDVSGILVPGGFGVRGIEGKVRAA 377 (550)
T ss_dssp SCC---CTTHHHHHHHHHHHHHTTEEEEEEEEEGGGC--C----C------HHHHTTTCSCEEECCCCSSTTHHHHHHHH
T ss_pred CeEEEEecHHHHHHHHHHHHHHcCCeEEEEEeCccccccc----h------HHHHHhcCCEEEECCCCCCcchhhhHHHH
Confidence 9998899999999999999998899999999997654321 1 23467899999999999998877888999
Q ss_pred HHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCC-CCCCCCcceeecceeEEEecCC
Q psy17159 133 KWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEH-NPGNMGGTMRLGKHETHFKPEH 211 (326)
Q Consensus 133 ~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~-~~~~~~~~~~lg~~~~~~~~~~ 211 (326)
+++++.++|+||||+|||+|+.++|+++.++.++++.++++. .++|++..++++ ....++++||+|++.+.+.+
T Consensus 378 r~a~e~~iPiLGICLGmQlL~~a~Gg~v~~l~~~~s~E~~~~---~~hpvi~~~~~q~~i~~~ggtmrlG~~~v~i~~-- 452 (550)
T 1vco_A 378 QYARERKIPYLGICLGLQIAVIEFARNVAGLKGANSTEFDPH---TPHPVIDLMPEQLEVEGLGGTMRLGDWPMRIKP-- 452 (550)
T ss_dssp HHHHHTTCCEEEETHHHHHHHHHHHHHTSCCTTCEETTTCTT---CSCEEEEESCGGGCC---CCCCEEEEEEEEECT--
T ss_pred HHHHHCCCcEEEECcCHHHHHHHhCcccccCCccccccccCC---CCCCeEEeccccccccccCCcccccceEEEEcc--
Confidence 999999999999999999999999999999988888888665 567877666542 23346889999999988875
Q ss_pred CchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCC-----CeEEEEEECCCCeEEEEcccCCCcCCCCC
Q psy17159 212 KSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKE-----VRMEIAELRDHPYYVAVQFHPEYLSRPLR 286 (326)
Q Consensus 212 ~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg-----~~veaie~~~~~~~~GvQFHPE~~~~~~~ 286 (326)
++++..+|+.. .+.++|+|+|.||+.+...+.+.+++++|+++|| .++|+++++++||++|||||||+.+++.+
T Consensus 453 ~s~l~~iy~~~-~v~e~h~H~Y~Vns~~~~~l~~~gl~v~a~s~dG~g~~~~~VeaIe~~~~p~fvGVQFHPE~~~~p~~ 531 (550)
T 1vco_A 453 GTLLHRLYGKE-EVLERHRHRYEVNPLYVDGLERAGLVVSATTPGMRGRGAGLVEAIELKDHPFFLGLQSHPEFKSRPMR 531 (550)
T ss_dssp TSHHHHHHCCS-EEEEEEEESEEECHHHHHHHHHHTEEEEEECCCBTTBSTTCEEEEEETTSSSEEEESSCGGGGCBTTB
T ss_pred CchhhHhcCCc-eeeeeccceEEEchHHhhccccCCeEEEEEeCCCCccCCCcEEEEEeCCCCEEEEEEeCCccCCCCCC
Confidence 89999999875 6778999999999988777634799999999984 35999999999995699999999999877
Q ss_pred CChHHHHHHHHHHhhh
Q psy17159 287 PSPPFLGLILAAAGKL 302 (326)
Q Consensus 287 ~~~lf~~Fl~~a~~~~ 302 (326)
+++||.+|++++.+++
T Consensus 532 g~~LF~~Fv~aa~~~~ 547 (550)
T 1vco_A 532 PSPPFVGFVEAALAYQ 547 (550)
T ss_dssp CCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhhc
Confidence 8899999999987654
No 4
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Probab=100.00 E-value=5.1e-45 Score=339.70 Aligned_cols=268 Identities=52% Similarity=0.913 Sum_probs=212.0
Q ss_pred hhhhcCCCceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEE
Q psy17159 37 LRIDRLNKTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIV 116 (326)
Q Consensus 37 ~~~~~~~~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglil 116 (326)
+++.++..+++|+|||||....++|.|+.++|+++|+.++..|.+.|+++.+++...++.++..|+++++.+.++|||||
T Consensus 17 ~~~~~~~~~~~Iavv~d~~~~~~s~~si~~~L~~~G~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgiil 96 (289)
T 2v4u_A 17 NLYFQSMKICSIALVGKYTKLRDCYASVFKALEHSALAINHKLNLMYIDSIDLEKITETEDPVKFHEAWQKLCKADGILV 96 (289)
T ss_dssp ------CEEEEEEEEESCSSCCGGGHHHHHHHHHHHHHTTEEEEEEEEEGGGGSHHHHHHCHHHHHHHHHHHHHCSEEEE
T ss_pred HHhhCcCCceEEEEEecCcCCCccHHHHHHHHHHhhhhhCCceEEEEechhhcccccccCChhhhhhHHHHHhhCCEEEe
Confidence 45566667789999999944445599999999999998888899999997654321111133334444445788999999
Q ss_pred CCCCCCCCCchHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCc
Q psy17159 117 PGGFGKRGLEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGG 196 (326)
Q Consensus 117 pGG~~~~~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~ 196 (326)
|||++.+...+..++++++++.++|+||||+|||+|+.++|+++.++.++...++.+. ..+|++..++.|.....++
T Consensus 97 ~GG~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Q~l~~a~Gg~v~~~~~~~~~e~~~~---~~~~~i~~~~~h~~~~~~~ 173 (289)
T 2v4u_A 97 PGGFGIRGTLGKLQAISWARTKKIPFLGVXLGMQLAVIEFARNCLNLKDADSTEFRPN---APVPLVIDMPEHNPGNLGG 173 (289)
T ss_dssp CSCCSSTTHHHHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHHSCCTTEEESTTCTT---CSEEEEEECCBCCTTCSSC
T ss_pred cCCCCchhHHHHHHHHHHHHHcCCcEEEECccHHHHHHHHhccccccccCcccccCcc---ccccceecchhhcccccCC
Confidence 9999987667788999999999999999999999999999999988777766666543 4556666666666555678
Q ss_pred ceeecceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccC-CCeEEEEEcCCCCeEEEEEECCCCeEEEEc
Q psy17159 197 TMRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEK-HGFLFTGVDEKEVRMEIAELRDHPYYVAVQ 275 (326)
Q Consensus 197 ~~~lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~-~gl~v~a~~~dg~~veaie~~~~~~~~GvQ 275 (326)
+|++|.+.+.+..+ ++.+.++++....++++|+|+|.||++.+..+ + ++++++|+++||.++||++++++||++|||
T Consensus 174 ~~~~g~~~v~~~~~-~s~l~~~~~~~~~v~~~H~H~y~vn~~~v~~l-~~~g~~v~A~s~dg~~ieaie~~~~p~~lGvQ 251 (289)
T 2v4u_A 174 TMRLGIRRTVFKTE-NSILRKLYGDVPFIEERHRHRFEVNPNLIKQF-EQNDLSFVGQDVDGDRMEIIELANHPYFVGVQ 251 (289)
T ss_dssp BCEEEEEEEEESCS-CCHHHHHTTSCSEEEEEEEECEEECGGGSGGG-TTSSEEEEEEETTSCSEEEEEESSSSCEEEES
T ss_pred ccccceEEEEEecC-CCHHHHhcCCCceEEEecccccccCHHHHHhc-ccCCeEEEEEcCCCCeEEEEEcCCCCeEEEEE
Confidence 89999999888634 78999998764368899999999999999888 6 899999999998559999999999877999
Q ss_pred ccCCCcCCCCCCChHHHHHHHHHHhhhHHHHHHh
Q psy17159 276 FHPEYLSRPLRPSPPFLGLILAAAGKLDAYIEKE 309 (326)
Q Consensus 276 FHPE~~~~~~~~~~lf~~Fl~~a~~~~~~~~~~~ 309 (326)
||||+..++.+++++|.+|+++|.+.+...++++
T Consensus 252 fHPE~~~~~~~~~~lf~~Fv~~~~~~~~~~~~~~ 285 (289)
T 2v4u_A 252 FHPEFSSRPMKPSPPYLGLLLAATGNLNAYLQQG 285 (289)
T ss_dssp SBGGGGCBTTBCCHHHHHHHHHHHTCHHHHHHTT
T ss_pred CCCCCCCCCCchHHHHHHHHHHHHhhhhhhhhcc
Confidence 9999998877678999999999988776666433
No 5
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Probab=100.00 E-value=1.3e-43 Score=327.75 Aligned_cols=249 Identities=39% Similarity=0.657 Sum_probs=198.1
Q ss_pred eEEEEEcccC-CCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCC
Q psy17159 46 VTIGLVGKYT-KFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRG 124 (326)
Q Consensus 46 ~~I~iigdyg-~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~ 124 (326)
++|+|||||+ .+.|||.|+.++|++++...+.+|.+.|+++.+++.. +.. +..+.++.+||||||||++.+.
T Consensus 9 ~~Iaivg~y~~~~~dny~S~~~aL~~~g~~~~~~v~v~~~~~~~~~~~----~~~---~~~~~~~~~dgiil~GG~~~~~ 81 (273)
T 2w7t_A 9 VRIAFVGKYLQDAGDTYFSVLQCFEHCQIALQVRLDILYVDSEELEGP----NAD---EARKALLGCDGIFVPGGFGNRG 81 (273)
T ss_dssp EEEEEEECCHHHHTTTTHHHHHHHHHHHHHHTCCEEEEEEEGGGGSST----TTH---HHHHHHHTCSEEEECCCCTTTT
T ss_pred CEEEEEeCCCcCCchHHHHHHHHHHHHHHhcCCceEEeccChhhcccc----cch---hHHHHHhhCCEEEecCCCCCcC
Confidence 8999999995 4449999999999999998888999999997654321 000 0123578999999999998876
Q ss_pred CchHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcceeeccee
Q psy17159 125 LEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHE 204 (326)
Q Consensus 125 ~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~lg~~~ 204 (326)
..+.+.+++++++.++|+||||+|||+|+.++|+++.++.++.+.+++.. .++|.+..+ .|....++++|++|++.
T Consensus 82 ~~~~~~~i~~~~~~~~PilGIC~G~Qll~~a~Gg~v~~~~~~~s~E~~~~---~~~~~l~~~-~~~~~~~~~~~~~g~~~ 157 (273)
T 2w7t_A 82 VDGKCAAAQVARMNNIPYFGVXLGMQVAVIELSRNVVGWSDANSEEFNKE---STHQVVRIM-DCDRNKMGANMHLGACD 157 (273)
T ss_dssp HHHHHHHHHHHHHHTCCEEEETHHHHHHHHHHHHHTTCCTTCEETTTCTT---CSCEEEECC-GGGBCSSCBCCEEEEEE
T ss_pred chhHHHHHHHHHHCCCcEEEECcCHHHHHHHHhCccccccCCchhhcccc---cCCCceeec-cccccccCCcccccceE
Confidence 66788899999989999999999999999999999988887776666443 334543333 24333345567899999
Q ss_pred EEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCC----CCeEEEEEECCCCeEEEEcccCCC
Q psy17159 205 THFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEK----EVRMEIAELRDHPYYVAVQFHPEY 280 (326)
Q Consensus 205 ~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~d----g~~veaie~~~~~~~~GvQFHPE~ 280 (326)
+.+..+ ++.+.++++....++.+|+|+|.|+++.+..+.+++++++|+++| |.++||++++++||++|||||||+
T Consensus 158 v~~~~~-~s~l~~~~~~~~~v~~~H~Hsy~v~~~~v~~l~~~g~~v~A~s~d~~~~g~~ieaie~~~~p~~~GvQfHPE~ 236 (273)
T 2w7t_A 158 VYIVEK-SSIMAKIYSKSNIVVERHRHRYEVNTAYFEDLRKAGLCISAVTDPTFSSRCRVEAVENPSLRFFLAVQFHPEF 236 (273)
T ss_dssp EEECCT-TSHHHHHTTTCSEEEEEEEECCEECGGGHHHHHHTTCEEEEESCTTCCTTCCEEEEECTTSSSEEEESSCGGG
T ss_pred EEEecC-CcHHHHHhCCCceEEeecccccccCHHHHHhhccCCcEEEEEcCCcCCCCCeEEEEEcCCCCeEEEEeCCCCc
Confidence 887644 778888887544688999999999998777653578999999998 535999999999987899999999
Q ss_pred cCCCCCCChHHHHHHHHHHhhhHHHH
Q psy17159 281 LSRPLRPSPPFLGLILAAAGKLDAYI 306 (326)
Q Consensus 281 ~~~~~~~~~lf~~Fl~~a~~~~~~~~ 306 (326)
+.++.++++||++|+++|.++...++
T Consensus 237 ~~~~~~~~~l~~~Fv~~~~~~~~~~~ 262 (273)
T 2w7t_A 237 ISTPMDPAPTYLSFMAAAAKKDYVWP 262 (273)
T ss_dssp SCBTTBCCHHHHHHHHHHHTCCCCCC
T ss_pred CCCCCchHHHHHHHHHHHHHHHHhhh
Confidence 99877668999999999987664443
No 6
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=99.97 E-value=5.9e-30 Score=245.26 Aligned_cols=225 Identities=18% Similarity=0.196 Sum_probs=162.2
Q ss_pred CcHHHHHHHhhcCCCCCCCeeeCCCCCcccccchhhhhcC-------C---CceEEEEEcccCCCchhHHHHHHHHHHHh
Q psy17159 3 DTESVRAKISMFCHVTPENVIFNPDVKPIYKVRMLRIDRL-------N---KTVTIGLVGKYTKFEDCYASLTRALEHAS 72 (326)
Q Consensus 3 ~~~~~~~ki~~~~~~~~~~v~~~~~~~~~y~~p~~~~~~~-------~---~~~~I~iigdyg~~~~~~~Si~~aL~~~g 72 (326)
|.+++++|+..+.++...|++..++++..|.+....|.-. . ...+|+++ |||. ..++.++|+.+|
T Consensus 138 ~~~~~~~~~~~~~~~~~~~l~~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~vi-D~G~----k~ni~r~L~~~G 212 (379)
T 1a9x_B 138 DAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTGGLPQAKKEDELPFHVVAY-DFGA----KRNILRMLVDRG 212 (379)
T ss_dssp CHHHHHHHHHHCCCSTTCBCHHHHSCSSCEEECCCCCBTTTBSCCCCCGGGCCEEEEEE-ESSC----CHHHHHHHHHTT
T ss_pred CHHHHHHHHHhCCCccccCccceeCCCCCEEeCCCCcccccccccccccccCCCEEEEE-ECCC----hHHHHHHHHHCC
Confidence 4567888999999999999999999999998722111110 0 14799999 9976 367999999988
Q ss_pred hhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCCCC-chHHHHHHHHHHcCCCEEEEehhH
Q psy17159 73 YHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKRGL-EGKIAACKWARENNKPFLGICLGL 149 (326)
Q Consensus 73 ~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~~~-~~~~~~i~~~~~~~~PvLGIClG~ 149 (326)
+. +.+++.+. + .+.+ .++|||||||||+++.. ...+++|+++++.++|+||||+||
T Consensus 213 ~~----v~vvp~~~----------~-------~e~i~~~~~DGliLsGGPgdp~~~~~~~~~Ir~~~~~~~PILGIClG~ 271 (379)
T 1a9x_B 213 CR----LTIVPAQT----------S-------AEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGH 271 (379)
T ss_dssp EE----EEEEETTC----------C-------HHHHHTTCCSEEEECCCSBCSTTCHHHHHHHHHHTTSCCCEEEETHHH
T ss_pred CE----EEEEeccC----------C-------HHHHhhcCCCEEEEeCCCCChHHHHHHHHHHHHHHHcCCCEEEECchH
Confidence 63 33333221 0 1122 36999999999998753 467788999988899999999999
Q ss_pred HHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcceeecceeEEEecCCCchHHhhhCCCcceeeec
Q psy17159 150 QAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHETHFKPEHKSKLKLLYGNKDKIEERH 229 (326)
Q Consensus 150 QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h 229 (326)
|+|+.++|+++..+..++ .| ..+.+.... .. ......+
T Consensus 272 QLLa~A~GG~v~k~~~gh------~g-------------------------~n~pv~~~~----------~g-~v~its~ 309 (379)
T 1a9x_B 272 QLLALASGAKTVKMKFGH------HG-------------------------GNHPVKDVE----------KN-VVMITAQ 309 (379)
T ss_dssp HHHHHHTTCCEEEEEEEE------EE-------------------------EEEEEEETT----------TT-EEEEEEE
T ss_pred HHHHHHhCcEEEeccccc------cc-------------------------CceeeEecC----------CC-cEEEEec
Confidence 999999999885532111 00 011111111 01 1223456
Q ss_pred ceeeeeCCcccccccCCCeEEEEEc-CCCCeEEEEEECCCCeEEEEcccCCCcCCCCCCChHHHHHHHHHHhh
Q psy17159 230 RHRYEVNKKYVPDYEKHGFLFTGVD-EKEVRMEIAELRDHPYYVAVQFHPEYLSRPLRPSPPFLGLILAAAGK 301 (326)
Q Consensus 230 ~h~~~vn~~~v~~l~~~gl~v~a~~-~dg~~veaie~~~~~~~~GvQFHPE~~~~~~~~~~lf~~Fl~~a~~~ 301 (326)
+|+|.|+++ .+ ++++++++++ +|+. +||++++++|+ +|||||||...++.+..+||++|++++.++
T Consensus 310 ~H~~aV~~~---~L-p~~~~v~a~s~~Dg~-ieai~~~~~pi-~gVQFHPE~~~~p~d~~~Lf~~Fl~~~~~~ 376 (379)
T 1a9x_B 310 NHGFAVDEA---TL-PANLRVTHKSLFDGT-LQGIHRTDKPA-FSFQGNPEASPGPHDAAPLFDHFIELIEQY 376 (379)
T ss_dssp EEEEEECST---TC-CTTEEEEEEETTTCC-EEEEEESSSSE-EEESSCTTCSSSCSTTTHHHHHHHHHHHHH
T ss_pred CccceEecc---cC-CCCeEEEEEeCCCCc-EEEEEECCCCE-EEEEeCCcCCCCcccHHHHHHHHHHHHHHh
Confidence 788998754 23 5789999998 6888 99999998886 999999999988766679999999988654
No 7
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=99.96 E-value=8e-29 Score=226.40 Aligned_cols=211 Identities=19% Similarity=0.242 Sum_probs=139.7
Q ss_pred eEEEEEcccCCC----------chhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEE
Q psy17159 46 VTIGLVGKYTKF----------EDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGII 115 (326)
Q Consensus 46 ~~I~iigdyg~~----------~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dgli 115 (326)
+.|||.+++... .-.+.+++++|+.+|+. ++.++... +. ++.+.++.+||||
T Consensus 5 p~IGi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~------pv~lp~~~--------~~----~~~~~l~~~DGli 66 (254)
T 3fij_A 5 PVIGITGNRLVKGVDVFYGHRVTYTQQRYVDAIQKVGGF------PIALPIDD--------PS----TAVQAISLVDGLL 66 (254)
T ss_dssp CEEEEEC------------------CHHHHHHHHHHTCE------EEEECCCC--------GG----GHHHHHHTCSEEE
T ss_pred CEEEEeCCcccccccccCCcchhhhhHHHHHHHHHCCCE------EEEEeCCC--------ch----HHHHHHhhCCEEE
Confidence 579998664210 01135678899888873 22333211 00 0234578999999
Q ss_pred ECCCCCC-C------CC-----------chHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCC
Q psy17159 116 VPGGFGK-R------GL-----------EGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQT 177 (326)
Q Consensus 116 lpGG~~~-~------~~-----------~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~ 177 (326)
||||++. + .. ...+.+|+++++.++|+||||+|||+|+.++|+++..... .. .
T Consensus 67 l~GG~~v~P~~yg~~~~~~~~~~~~~rd~~~~~lir~a~~~~~PiLGIC~G~Qll~~a~Gg~v~~~~~--~~-~------ 137 (254)
T 3fij_A 67 LTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGMQLVNVALGGTLYQDIS--QV-E------ 137 (254)
T ss_dssp ECCCSCCCGGGGTCCCCTTCCCCCHHHHHHHHHHHHHHHHTTCCEEEETHHHHHHHHHTTCCEESSGG--GS-S------
T ss_pred ECCCCCCChhhcCCccCcccCCcChhhhHHHHHHHHHHHHcCCCEEEECHHHHHHHHHhCCceecccc--cc-c------
Confidence 9999762 1 00 1267889999999999999999999999999998742211 00 0
Q ss_pred ccCCeeeccCCCCCCCCCcceeecceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCC
Q psy17159 178 LEHPVVVYMPEHNPGNMGGTMRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKE 257 (326)
Q Consensus 178 ~~~plv~~~~~~~~~~~~~~~~lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg 257 (326)
.+.+.+.. ....++|++.+.+.. ++.+.+.++....++++|+ +.| ..+ +++++++|+++||
T Consensus 138 --~~~~~h~~-------~~~~~~g~~~v~~~~--~s~l~~~~~~~~~v~~~H~--~~v-----~~l-~~g~~v~a~s~dg 198 (254)
T 3fij_A 138 --TKALQHLQ-------RVDEQLGSHTIDIEP--TSELAKHHPNKKLVNSLHH--QFI-----KKL-APSFKVTARTADG 198 (254)
T ss_dssp --SCCCCCBC-------CSCTTSCCEEEEECT--TSSGGGTCCTTEEECCBCS--CEE-----SSC-CSSEEEEEEETTC
T ss_pred --CccccccC-------CCCCccceEEEEeCC--CChHHHhcCCcEEEEEecc--chh-----hcc-CCCcEEEEEeCCC
Confidence 00011111 012346888888765 6778888776323555553 333 345 7899999999999
Q ss_pred CeEEEEEEC-CCCeEEEEcccCCCcCCCCC-CChHHHHHHHHHHhhhH
Q psy17159 258 VRMEIAELR-DHPYYVAVQFHPEYLSRPLR-PSPPFLGLILAAAGKLD 303 (326)
Q Consensus 258 ~~veaie~~-~~~~~~GvQFHPE~~~~~~~-~~~lf~~Fl~~a~~~~~ 303 (326)
. +||++++ ++||++|||||||++.++.. ..+||++|+++|.++..
T Consensus 199 ~-ieai~~~~~~~~~~gvQfHPE~~~~~~~~~~~lf~~Fv~~~~~~~~ 245 (254)
T 3fij_A 199 M-IEAVEGDNLPSWYLGVQWHPELMFQTDPESEQLFQALVDESKKTMV 245 (254)
T ss_dssp C-EEEEEESSCSSCEEEESSCGGGTGGGCHHHHHHHHHHHHHHHSCC-
T ss_pred c-EEEEEecCCCCeEEEEEcCCccCCCCCchHHHHHHHHHHHHHHHHh
Confidence 8 9999999 99877999999999986432 25899999999987653
No 8
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=99.96 E-value=2.4e-28 Score=217.49 Aligned_cols=191 Identities=20% Similarity=0.241 Sum_probs=135.1
Q ss_pred CCceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCC-CC
Q psy17159 43 NKTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGG-FG 121 (326)
Q Consensus 43 ~~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG-~~ 121 (326)
-.++||.++ |++. ....++.++|+.+|+.+ .++..+. + .+.+.++|||||||| ++
T Consensus 11 ~~~~~i~~i-d~~~--~~~~~~~~~l~~~G~~~----~vv~~~~----------~-------~~~l~~~DglIl~GG~p~ 66 (212)
T 2a9v_A 11 HHMLKIYVV-DNGG--QWTHREWRVLRELGVDT----KIVPNDI----------D-------SSELDGLDGLVLSGGAPN 66 (212)
T ss_dssp CCCCBEEEE-EESC--CTTCHHHHHHHHTTCBC----CEEETTS----------C-------GGGGTTCSEEEEEEECSC
T ss_pred cccceEEEE-eCCC--ccHHHHHHHHHHCCCEE----EEEeCCC----------C-------HHHHhCCCEEEECCCCCC
Confidence 345899999 7775 55667888999888642 2222210 1 125667999999999 77
Q ss_pred CCCCc-hHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcceee
Q psy17159 122 KRGLE-GKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRL 200 (326)
Q Consensus 122 ~~~~~-~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~l 200 (326)
..... ....+.+.+++.++|+||||+|||+|+.++|+++..... ...
T Consensus 67 ~~~~~~~~~~l~~~~~~~~~PiLGIC~G~Qll~~~lGg~v~~~~~--------------------------------~~~ 114 (212)
T 2a9v_A 67 IDEELDKLGSVGKYIDDHNYPILGICVGAQFIALHFGASVVKAKH--------------------------------PEF 114 (212)
T ss_dssp GGGTGGGHHHHHHHHHHCCSCEEEETHHHHHHHHHTTCEEEEEEE--------------------------------EEE
T ss_pred CCcccccchhHHHHHHhCCCCEEEEChHHHHHHHHhCCEEEcCCC--------------------------------ccc
Confidence 65322 233345556688999999999999999999988743210 013
Q ss_pred cceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEcccCCC
Q psy17159 201 GKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPEY 280 (326)
Q Consensus 201 g~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFHPE~ 280 (326)
|++.+.+.. ++.+.+.++. ....++.|++.+. .+ +++++++|+++++. ++|+++++.++ +|||||||+
T Consensus 115 G~~~v~~~~--~~~l~~~~~~--~~~v~~~H~~~v~-----~l-~~~~~vlA~s~d~~-i~ai~~~~~~i-~gvQfHPE~ 182 (212)
T 2a9v_A 115 GKTKVSVMH--SENIFGGLPS--EITVWENHNDEII-----NL-PDDFTLAASSATCQ-VQGFYHKTRPI-YATQFHPEV 182 (212)
T ss_dssp EEEEEEESC--CCGGGTTCCS--EEEEEEEEEEEEE-----SC-CTTEEEEEECSSCS-CSEEEESSSSE-EEESSCTTS
T ss_pred CceeeEECC--CChhHhcCCC--ceEEEeEhhhhHh-----hC-CCCcEEEEEeCCCC-EEEEEECCCCE-EEEEeCCCC
Confidence 666666654 5555555443 2445677777653 34 67999999999998 99999987776 999999999
Q ss_pred cCCCCCCChHHHHHHHHHHhhh
Q psy17159 281 LSRPLRPSPPFLGLILAAAGKL 302 (326)
Q Consensus 281 ~~~~~~~~~lf~~Fl~~a~~~~ 302 (326)
..++. +.++|++|++.|.+++
T Consensus 183 ~~~~~-g~~l~~~F~~~~~~~~ 203 (212)
T 2a9v_A 183 EHTQY-GRDIFRNFIGICASYR 203 (212)
T ss_dssp TTSTT-HHHHHHHHHHHHHHHH
T ss_pred CCCcc-HHHHHHHHHHHHHHhh
Confidence 97654 3589999999886543
No 9
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=99.96 E-value=6.5e-30 Score=226.76 Aligned_cols=191 Identities=18% Similarity=0.169 Sum_probs=120.1
Q ss_pred EEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCCC-
Q psy17159 47 TIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRGL- 125 (326)
Q Consensus 47 ~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~~- 125 (326)
||+|| |||. +|..|+.++|+++|+++ .+ +. + ++.+.++|+||||||......
T Consensus 4 ~I~ii-D~g~--~n~~si~~al~~~G~~~----~v--~~-----------~-------~~~l~~~D~lilPG~g~~~~~~ 56 (211)
T 4gud_A 4 NVVII-DTGC--ANISSVKFAIERLGYAV----TI--SR-----------D-------PQVVLAADKLFLPGVGTASEAM 56 (211)
T ss_dssp CEEEE-CCCC--TTHHHHHHHHHHTTCCE----EE--EC-----------C-------HHHHHHCSEEEECCCSCHHHHH
T ss_pred EEEEE-ECCC--ChHHHHHHHHHHCCCEE----EE--EC-----------C-------HHHHhCCCEEEECCCCCHHHHH
Confidence 79999 9999 99999999999999742 22 22 1 236788999999975322111
Q ss_pred c--hHHHHHHHHHHcCCCEEEEehhHHHHHHHhCccc---------ccccCCcccccCCCCCCccCCeeeccCCCCCCCC
Q psy17159 126 E--GKIAACKWARENNKPFLGICLGLQAAVIEYGRSV---------LGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNM 194 (326)
Q Consensus 126 ~--~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~---------l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~ 194 (326)
. ....+++.+++.++|+||||+|||+|+.++|+++ +++.++.+.++...+.
T Consensus 57 ~~~~~~~~i~~~~~~~~PvlGIClG~QlL~~~~g~~~~~~~~~~~gl~~~~~~v~~~~~~~~------------------ 118 (211)
T 4gud_A 57 KNLTERDLIELVKRVEKPLLGICLGMQLLGKLSEEKGQKADEIVQCLGLVDGEVRLLQTGDL------------------ 118 (211)
T ss_dssp HHHHHTTCHHHHHHCCSCEEEETHHHHTTSSEECCC----CCCEECCCSSSCEEEECCCTTS------------------
T ss_pred HHHHhcChHHHHHHcCCCEEEEchhHhHHHHHhCCcccccCCccccceeccceEEEcccCCc------------------
Confidence 1 1123466677889999999999999998887654 3344444433322100
Q ss_pred CcceeecceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEE
Q psy17159 195 GGTMRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAV 274 (326)
Q Consensus 195 ~~~~~lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~Gv 274 (326)
.....++..+..... ++++..+. ....+ ++.|+|.+. .+..++|++++|. ..++.++++|+ +||
T Consensus 119 -~~~~~~~~~~~~~~~-~~l~~~l~-~~~~~--~~~H~~~v~---------~~~~~~a~~~~g~-~~~~~v~~~~v-~Gv 182 (211)
T 4gud_A 119 -PLPHMGWNTVQVKEG-HPLFNGIE-PDAYF--YFVHSFAMP---------VGDYTIAQCEYGQ-PFSAAIQAGNY-YGV 182 (211)
T ss_dssp -CSSEEEEECCEECTT-CGGGTTCC-TTCCE--EEEESEECC---------CCTTEEEEEESSS-EEEEEEEETTE-EEE
T ss_pred -ceeeccceeeeeecc-ChhhcCCC-CCcEE--EEEeeEEeC---------CCCeEEEEecCCC-eEEEEEeCCCE-EEE
Confidence 011234444444442 34444443 32233 444566542 3556788888887 55666666786 999
Q ss_pred cccCCCcCCCCCCChHHHHHHHHHHh
Q psy17159 275 QFHPEYLSRPLRPSPPFLGLILAAAG 300 (326)
Q Consensus 275 QFHPE~~~~~~~~~~lf~~Fl~~a~~ 300 (326)
|||||++ ++. +.+||+||++.|.+
T Consensus 183 QFHPE~s-~~~-G~~ll~nFl~~~ge 206 (211)
T 4gud_A 183 QFHPERS-SKA-GARLIQNFLELRGE 206 (211)
T ss_dssp SSCGGGS-HHH-HHHHHHHHHHC---
T ss_pred EccCEec-Ccc-HHHHHHHHHHHhcc
Confidence 9999986 332 34899999987754
No 10
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=99.95 E-value=8.5e-28 Score=209.79 Aligned_cols=184 Identities=21% Similarity=0.206 Sum_probs=127.3
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKR 123 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~ 123 (326)
|+|+|| ||+. ++..++.++|+++|+. +.+...+. + .+.+ .++||||||||+ .+
T Consensus 1 mmi~ii-d~~~--~~~~~~~~~l~~~G~~----~~~~~~~~----------~-------~~~~~~~~~dglil~Gg~-~~ 55 (189)
T 1wl8_A 1 MMIVIM-DNGG--QYVHRIWRTLRYLGVE----TKIIPNTT----------P-------LEEIKAMNPKGIIFSGGP-SL 55 (189)
T ss_dssp CEEEEE-ECSC--TTHHHHHHHHHHTTCE----EEEEETTC----------C-------HHHHHHTCCSEEEECCCS-CT
T ss_pred CeEEEE-ECCC--chHHHHHHHHHHCCCe----EEEEECCC----------C-------hHHhcccCCCEEEECCCC-Ch
Confidence 359999 8887 7788999999998763 23222211 1 1133 369999999998 44
Q ss_pred CCch-HHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcceeecc
Q psy17159 124 GLEG-KIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGK 202 (326)
Q Consensus 124 ~~~~-~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~lg~ 202 (326)
...+ ..++++.+.+.++|+||||+|||+|+.++|+++...... ..|+
T Consensus 56 ~~~~~~~~~i~~~~~~~~PilGIC~G~Q~l~~~~gg~v~~~~~~--------------------------------~~G~ 103 (189)
T 1wl8_A 56 ENTGNCEKVLEHYDEFNVPILGICLGHQLIAKFFGGKVGRGEKA--------------------------------EYSL 103 (189)
T ss_dssp TCCTTHHHHHHTGGGTCSCEEEETHHHHHHHHHHTCEEEECSCC--------------------------------SCEE
T ss_pred hhhhhHHHHHHHHhhCCCeEEEEcHHHHHHHHHhCCceecCCCc--------------------------------ccCc
Confidence 3333 467787766789999999999999999999988432110 0244
Q ss_pred eeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEcccCCCcC
Q psy17159 203 HETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPEYLS 282 (326)
Q Consensus 203 ~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFHPE~~~ 282 (326)
..+.+... ++++. .++. ....+|.|...+ .++ +++++++|++++|. ++|++++++|+ +|||||||+..
T Consensus 104 ~~~~~~~~-~~l~~-~~~~--~~~~~~~h~~~v-----~~l-~~~~~vla~s~~g~-i~a~~~~~~~~-~gvQfHPE~~~ 171 (189)
T 1wl8_A 104 VEIEIIDE-XEIFK-GLPK--RLKVWESHMDEV-----KEL-PPKFKILARSETCP-IEAMKHEELPI-YGVQFHPEVAH 171 (189)
T ss_dssp EEEEESCC---CCT-TSCS--EEEEEECCSEEE-----EEC-CTTEEEEEEESSCS-CSEEEESSSCE-EEESSCTTSTT
T ss_pred eeEEEecC-chHHh-CCCC--ceEEEEEeeeeh-----hhC-CCCcEEEEEcCCCC-EEEEEeCCceE-EEEecCCCcCC
Confidence 44444332 33333 3332 234456665543 244 78999999999997 99999998886 99999999987
Q ss_pred CCCCCChHHHHHHHHHH
Q psy17159 283 RPLRPSPPFLGLILAAA 299 (326)
Q Consensus 283 ~~~~~~~lf~~Fl~~a~ 299 (326)
++. ..++|++|+++|.
T Consensus 172 ~~~-g~~l~~~f~~~~~ 187 (189)
T 1wl8_A 172 TEK-GEEILRNFAKLCG 187 (189)
T ss_dssp STT-HHHHHHHHHHHHC
T ss_pred Ccc-hHHHHHHHHHHHh
Confidence 653 3589999998763
No 11
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=99.95 E-value=4.5e-27 Score=206.41 Aligned_cols=181 Identities=16% Similarity=0.209 Sum_probs=120.7
Q ss_pred EEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhc--CCCEEEECCCCCCCCC
Q psy17159 48 IGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFC--KVDGIIVPGGFGKRGL 125 (326)
Q Consensus 48 I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~--~~dglilpGG~~~~~~ 125 (326)
|+|| |... ..-.++.+.|+.+|+ .+.++..+... .+.+. ++|||||+||++.+..
T Consensus 4 i~ii-d~~~--s~~~~~~~~l~~~G~----~~~v~~~~~~~----------------~~~~~~~~~dglil~gG~~~~~~ 60 (195)
T 1qdl_B 4 TLII-DNYD--SFVYNIAQIVGELGS----YPIVIRNDEIS----------------IKGIERIDPDRLIISPGPGTPEK 60 (195)
T ss_dssp EEEE-ECSC--SSHHHHHHHHHHTTC----EEEEEETTTSC----------------HHHHHHHCCSEEEECCCSSCTTS
T ss_pred EEEE-ECCC--chHHHHHHHHHhCCC----EEEEEeCCCCC----------------HHHHhhCCCCEEEECCCCCChhh
Confidence 9999 5432 122346778887765 33333322100 11333 6999999999887653
Q ss_pred ---c-hHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcceeec
Q psy17159 126 ---E-GKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLG 201 (326)
Q Consensus 126 ---~-~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~lg 201 (326)
. ...++++++ +.++|+||||+|||+|+.++|+++....... | -+
T Consensus 61 ~~~~~~~~~~i~~~-~~~~PvLGIC~G~QlL~~~~gg~v~~~~~~~---------------------~----------g~ 108 (195)
T 1qdl_B 61 REDIGVSLDVIKYL-GKRTPILGVCLGHQAIGYAFGAKIRRARKVF---------------------H----------GK 108 (195)
T ss_dssp HHHHTTHHHHHHHH-TTTSCEEEETHHHHHHHHHTTCEEEEEEEEE---------------------E----------EE
T ss_pred hhhhhHHHHHHHHh-cCCCcEEEEehHHHHHHHHhCCEEeccCCCc---------------------C----------CC
Confidence 2 234777774 7799999999999999999999874321100 0 01
Q ss_pred ceeEEEecCCCc--hHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEc-CCCCeEEEEEECCCCeEEEEcccC
Q psy17159 202 KHETHFKPEHKS--KLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVD-EKEVRMEIAELRDHPYYVAVQFHP 278 (326)
Q Consensus 202 ~~~~~~~~~~~s--~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~-~dg~~veaie~~~~~~~~GvQFHP 278 (326)
++.+.+.. ++ .+.+.++. .....+.|++.|. .+ +++++++|++ ++|. ++|++++++++ +||||||
T Consensus 109 ~~~v~~~~--~~~~~l~~~~~~--~~~v~~~H~~~v~-----~l-~~~~~vla~s~~~g~-i~a~~~~~~~~-~gvQfHP 176 (195)
T 1qdl_B 109 ISNIILVN--NSPLSLYYGIAK--EFKATRYHSLVVD-----EV-HRPLIVDAISAEDNE-IMAIHHEEYPI-YGVQFHP 176 (195)
T ss_dssp EEEEEECC--SSCCSTTTTCCS--EEEEEEEEEEEEE-----CC-CTTEEEEEEESSSCC-EEEEEESSSSE-EEESSBT
T ss_pred ceEEEECC--CCHhHHHhcCCC--ceEEeccccchhh-----hC-CCCcEEEEEECCCCc-EEEEEeCCCCE-EEEecCC
Confidence 22333322 33 44444433 3455666777764 34 6899999999 8997 99999998776 9999999
Q ss_pred CCcCCCCCCChHHHHHHH
Q psy17159 279 EYLSRPLRPSPPFLGLIL 296 (326)
Q Consensus 279 E~~~~~~~~~~lf~~Fl~ 296 (326)
|++.++. ..++|++|++
T Consensus 177 E~~~~~~-g~~l~~~f~~ 193 (195)
T 1qdl_B 177 ESVGTSL-GYKILYNFLN 193 (195)
T ss_dssp TSTTCTT-HHHHHHHHHH
T ss_pred CCCCCcc-HHHHHHHHHh
Confidence 9998654 3589999986
No 12
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=99.94 E-value=6.1e-28 Score=215.80 Aligned_cols=184 Identities=15% Similarity=0.095 Sum_probs=122.6
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKR 123 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~ 123 (326)
.+|+|| ||+. ++..++.++|+.+|+. +.+++++. ++ +.+ .++||||||||++..
T Consensus 25 ~~I~ii-D~g~--~~~~~i~~~l~~~G~~----~~vv~~~~----------~~-------~~l~~~~~dglil~Gg~~~~ 80 (218)
T 2vpi_A 25 GAVVIL-DAGA--QYGKVIDRRVRELFVQ----SEIFPLET----------PA-------FAIKEQGFRAIIISGGPNSV 80 (218)
T ss_dssp TCEEEE-ECST--TTTHHHHHHHHHTTCC----EEEECTTC----------CH-------HHHHHHTCSEEEEEC-----
T ss_pred CeEEEE-ECCC--chHHHHHHHHHHCCCE----EEEEECCC----------Ch-------HHHhhcCCCEEEECCCCccc
Confidence 479999 9987 6777899999998863 33333321 11 123 469999999998754
Q ss_pred CCchHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcceeecce
Q psy17159 124 GLEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKH 203 (326)
Q Consensus 124 ~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~lg~~ 203 (326)
.......+.+.+++.++|+||||+|||+|+.++|+++...... ..|++
T Consensus 81 ~~~~~~~~~~~~~~~~~PilGIC~G~Qll~~~~GG~v~~~~~~--------------------------------~~G~~ 128 (218)
T 2vpi_A 81 YAEDAPWFDPAIFTIGKPVLGICYGMQMMNKVFGGTVHKKSVR--------------------------------EDGVF 128 (218)
T ss_dssp ----CCCCCGGGGTSSCCEEEETHHHHHHHHHTTCCEEEEEEC--------------------------------SCEEE
T ss_pred ccccchhHHHHHHHcCCCEEEEcHHHHHHHHHhCCceEeCCCC--------------------------------cccEE
Confidence 2111111223445678999999999999999999987432100 12555
Q ss_pred eEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEcccCCCcCC
Q psy17159 204 ETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPEYLSR 283 (326)
Q Consensus 204 ~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFHPE~~~~ 283 (326)
.+.+.. ++.+.+.++.. ....+.|++.|. .+ +++++++|++ ++. ++|+++++.++ +|||||||+..+
T Consensus 129 ~v~~~~--~~~l~~~l~~~--~~v~~~H~~~v~-----~l-~~~~~vlA~s-~~~-i~ai~~~~~~i-~gvQfHPE~~~~ 195 (218)
T 2vpi_A 129 NISVDN--TCSLFRGLQKE--EVVLLTHGDSVD-----KV-ADGFKVVARS-GNI-VAGIANESKKL-YGAQFHPEVGLT 195 (218)
T ss_dssp EEEECT--TSGGGTTCCSE--EEEEECSEEEES-----SC-CTTCEEEEEE-TTE-EEEEEETTTTE-EEESSCTTSTTS
T ss_pred EEEEcc--CChhHhcCCCC--cEEeehhhhHhh-----hc-CCCCEEEEEc-CCe-EEEEEECCCCE-EEEEcCCCCCCC
Confidence 555543 56666655542 234456777764 34 6799999999 664 99999988886 999999999886
Q ss_pred CCCCChHHHHHH-HHHH
Q psy17159 284 PLRPSPPFLGLI-LAAA 299 (326)
Q Consensus 284 ~~~~~~lf~~Fl-~~a~ 299 (326)
+. +.+||++|+ +.|.
T Consensus 196 ~~-g~~l~~~F~~~~~~ 211 (218)
T 2vpi_A 196 EN-GKVILKNFLYDIAG 211 (218)
T ss_dssp TT-HHHHHHHHHTTTTC
T ss_pred hh-HHHHHHHHHHHHhC
Confidence 54 368999999 6553
No 13
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=99.93 E-value=4.8e-26 Score=228.94 Aligned_cols=210 Identities=17% Similarity=0.209 Sum_probs=132.5
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhc--CCCEEEECCCCCCC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFC--KVDGIIVPGGFGKR 123 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~--~~dglilpGG~~~~ 123 (326)
.+|+|| |||+ ++..++.++|+.+|..+ .+.+.+. . .+.+. ++|||||||||+..
T Consensus 8 ~~Ilil-D~Gs--~~~~~I~r~lre~Gv~~----eiv~~~~-~----------------~~~i~~~~~dgIIlsGGp~s~ 63 (556)
T 3uow_A 8 DKILVL-NFGS--QYFHLIVKRLNNIKIFS----ETKDYGV-E----------------LKDIKDMNIKGVILSGGPYSV 63 (556)
T ss_dssp CEEEEE-ESSC--TTHHHHHHHHHHTTCCE----EEEETTC-C----------------GGGTTTSCEEEEEECCCSCCT
T ss_pred CEEEEE-ECCC--ccHHHHHHHHHHCCCeE----EEEECCC-C----------------HHHHhhcCCCEEEECCCCCcc
Confidence 589999 9998 77889999999988642 3333321 1 11332 78999999999775
Q ss_pred CCch----HHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCC-------CCCCccCCeeeccCCCCCC
Q psy17159 124 GLEG----KIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQP-------PGQTLEHPVVVYMPEHNPG 192 (326)
Q Consensus 124 ~~~~----~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~-------~g~~~~~plv~~~~~~~~~ 192 (326)
...+ ...+++.+.+.++|+||||+|||+|+.++|+++.... ..+++. .+...++|++..++...
T Consensus 64 ~~~~~~~~~~~l~~~a~~~g~PvLGIC~G~QlLa~~lGG~V~~~~---~~E~G~~~l~~~~~~~~~~~p~v~~~~~~~-- 138 (556)
T 3uow_A 64 TEAGSPHLKKEVFEYFLEKKIPIFGICYGMQEIAVQMNGEVKKSK---TSEYGCTDVNILRNDNINNITYCRNFGDSS-- 138 (556)
T ss_dssp TSTTCCCCCHHHHHHHHHTTCCEEEETHHHHHHHHHTTCEEEEEE---EEEEEEEEEEECCTTGGGGCSGGGGC---C--
T ss_pred cccCCcchhHHHHHHhhhcCCCEEEECHHHHHHHHHhCCcEecCC---CcccCCcceeeccCcccccccceecccccc--
Confidence 3221 2345566677799999999999999999999874321 111110 00001223222222110
Q ss_pred CCCcceeecceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEE
Q psy17159 193 NMGGTMRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYV 272 (326)
Q Consensus 193 ~~~~~~~lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~ 272 (326)
.+|..+...+.+... ++++..+++. ....++.|++.| ..+ +++++++|+++++. ++|++++++++ |
T Consensus 139 ---~~mg~~~n~~~~~~~-~~Lf~gl~~~--~~~v~~~H~d~V-----~~l-p~g~~vlA~s~~~~-i~ai~~~~~~i-~ 204 (556)
T 3uow_A 139 ---SAMDLYSNYKLMNET-CCLFENIKSD--ITTVWMNHNDEV-----TKI-PENFYLVSSSENCL-ICSIYNKEYNI-Y 204 (556)
T ss_dssp ---CHHHHHTTSCCCC---CGGGTTCCSS--EEEEEEEEEEEE-----EEC-CTTCEEEEEETTEE-EEEEEETTTTE-E
T ss_pred ---ccccccccccccccc-chhhcccccC--ceEEEEEcccee-----ecc-CCCcEEEEEeCCCC-EEEEEECCCCE-E
Confidence 112211122222221 3455444233 234555666654 344 78999999999997 99999988887 9
Q ss_pred EEcccCCCcCCCCCCChHHHHHHHHHH
Q psy17159 273 AVQFHPEYLSRPLRPSPPFLGLILAAA 299 (326)
Q Consensus 273 GvQFHPE~~~~~~~~~~lf~~Fl~~a~ 299 (326)
|+|||||++.++. +.++|++|+..++
T Consensus 205 GvQFHPE~~~~~~-G~~ll~nFl~~i~ 230 (556)
T 3uow_A 205 GVQYHPEVYESLD-GELMFYNFAYNIC 230 (556)
T ss_dssp EESSCTTSTTSTT-HHHHHHHHHTTTT
T ss_pred EEEcCCCCCcccc-chHHHHHHHHHhh
Confidence 9999999998864 4689999995543
No 14
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=99.93 E-value=2e-26 Score=230.66 Aligned_cols=188 Identities=18% Similarity=0.227 Sum_probs=126.1
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhc--CCCEEEECCCCCCC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFC--KVDGIIVPGGFGKR 123 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~--~~dglilpGG~~~~ 123 (326)
.+|+|| |||+ ++-.++.++|+.+|..+ .+...+. . .+.+. ++|||||||||+..
T Consensus 11 ~~I~Il-D~g~--~~~~~i~r~lr~~Gv~~----~i~p~~~-~----------------~~~i~~~~~dgIILsGGp~sv 66 (527)
T 3tqi_A 11 HRILIL-DFGS--QYAQLIARRVREIGVYC----ELMPCDI-D----------------EETIRDFNPHGIILSGGPETV 66 (527)
T ss_dssp SEEEEE-ECSC--TTHHHHHHHHHHHTCEE----EEEETTC-C----------------SSSSTTTCCSEEEECCCCC--
T ss_pred CeEEEE-ECCC--ccHHHHHHHHHHCCCeE----EEEECCC-C----------------HHHHHhcCCCEEEECCcCccc
Confidence 489999 9997 67789999999998743 3322221 0 01232 56999999999876
Q ss_pred CCchHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcceeecce
Q psy17159 124 GLEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKH 203 (326)
Q Consensus 124 ~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~lg~~ 203 (326)
...+...+.+.+++.++|+||||+|||+|+.++|+++..... ...|+.
T Consensus 67 ~~~~~~~~~~~~~~~~~PvLGIC~G~Qlla~~lGG~V~~~~~--------------------------------~e~G~~ 114 (527)
T 3tqi_A 67 TLSHTLRAPAFIFEIGCPVLGICYGMQTMAYQLGGKVNRTAK--------------------------------AEFGHA 114 (527)
T ss_dssp -------CCCSTTTSSSCEEEETHHHHHHHHHSSSCBC-------------------------------------CEEEE
T ss_pred ccCCChhhHHHHHhcCCCEEEEChHHHHHHHHcCCeEEeCCC--------------------------------ccccce
Confidence 544444445566678999999999999999999998833110 123566
Q ss_pred eEEEecCCCchHHhhhCC-----CcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEcccC
Q psy17159 204 ETHFKPEHKSKLKLLYGN-----KDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHP 278 (326)
Q Consensus 204 ~~~~~~~~~s~l~~~~~~-----~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFHP 278 (326)
.+.+... +.++..+... ......++.|++.| ..+ +++++++|+++++. ++|++++++++ |||||||
T Consensus 115 ~v~~~~~-~~l~~~l~~~~~~~~~~~~~v~~~H~d~v-----~~l-p~g~~v~A~s~~~~-i~ai~~~~~~~-~GvQFHP 185 (527)
T 3tqi_A 115 QLRVLNP-AFLFDGIEDQVSPQGEPLLDVWMSHGDIV-----SEL-PPGFEATACTDNSP-LAAMADFKRRF-FGLQFHP 185 (527)
T ss_dssp EEEESSC-TTTTSSCCSBCCTTSCCEEEEEEESSSCB-----CSC-CTTCEEEEEETTEE-EEEEECSSSCE-EEESBCS
T ss_pred EEEEcCC-ChhhcCCccccccccccceEEEEEcccch-----hcc-CCCCEEEEEeCCCc-EEEEEcCCCCE-EEEEecc
Confidence 6665542 3344444321 00133444555554 445 78999999999888 99999988887 9999999
Q ss_pred CCcCCCCCCChHHHHHHHHHH
Q psy17159 279 EYLSRPLRPSPPFLGLILAAA 299 (326)
Q Consensus 279 E~~~~~~~~~~lf~~Fl~~a~ 299 (326)
|.+.++.+ .++|++|+..++
T Consensus 186 E~~~t~~G-~~ll~nF~~~i~ 205 (527)
T 3tqi_A 186 EVTHTPQG-HRILAHFVIHIC 205 (527)
T ss_dssp SSTTSTTH-HHHHHHHHHTTS
T ss_pred cccccccc-chhhhhhhhhcc
Confidence 99988754 589999996554
No 15
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=99.93 E-value=1.4e-25 Score=196.38 Aligned_cols=144 Identities=19% Similarity=0.189 Sum_probs=93.3
Q ss_pred CCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCC
Q psy17159 110 KVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEH 189 (326)
Q Consensus 110 ~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~ 189 (326)
+.+++||+||++.+...+....+.++++.++|+||||+|||+|+.++|+++..... + .
T Consensus 47 ~~~~iil~gGpg~~~~~~~~~~l~~~~~~~~PilGIC~G~Qll~~~~Gg~v~~~~~---------------~------~- 104 (192)
T 1i1q_B 47 KNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQAGE---------------I------L- 104 (192)
T ss_dssp SSEEEEECCCSSCGGGSTTHHHHHHHHBTTBCEEEETHHHHHHHHHTSCCCCC------------------C------C-
T ss_pred cCCeEEECCCCcCchhCchHHHHHHHHhcCCCEEEECcChHHHHHHhCCEEEeCCC---------------c------E-
Confidence 34579999999886544433333334677999999999999999999987632110 0 0
Q ss_pred CCCCCCcceeecceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCC
Q psy17159 190 NPGNMGGTMRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHP 269 (326)
Q Consensus 190 ~~~~~~~~~~lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~ 269 (326)
.|......... ++++..+ +. .....+.|++.+. .+ +++++++|.+ ++. ++++++++.+
T Consensus 105 ----------~g~~~~~~~~~-~~l~~~~-~~--~~~v~~~H~~~v~-----~l-p~~~~v~a~~-~~~-~~ai~~~~~~ 162 (192)
T 1i1q_B 105 ----------HGKATSIEHDG-QAMFAGL-AN--PLPVARYHSLVGS-----NV-PAGLTINAHF-NGM-VMAVRHDADR 162 (192)
T ss_dssp ----------SSEEEEEEECC-CGGGTTS-CS--SEEEEECCC---C-----CC-CTTCEEEEEE-TTE-EEEEEETTTT
T ss_pred ----------ecceeEEecCC-ChHHhcC-CC--CcEEEechhhHhh-----hC-CCccEEEECC-CCc-EEEEEECCCC
Confidence 01111122221 3344333 33 2344556666543 44 6789999954 555 9999998888
Q ss_pred eEEEEcccCCCcCCCCCCChHHHHHHHHHH
Q psy17159 270 YYVAVQFHPEYLSRPLRPSPPFLGLILAAA 299 (326)
Q Consensus 270 ~~~GvQFHPE~~~~~~~~~~lf~~Fl~~a~ 299 (326)
+ +|||||||++.++.+ .++|++|++.+.
T Consensus 163 ~-~gvQfHPE~~~~~~g-~~il~nf~~~~~ 190 (192)
T 1i1q_B 163 V-CGFQFHPESILTTQG-ARLLEQTLAWAQ 190 (192)
T ss_dssp E-EEESSBTTSTTCTTH-HHHHHHHHHHHT
T ss_pred E-EEEEccCcccCCccc-HHHHHHHHHHHh
Confidence 6 999999999976543 589999998754
No 16
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=99.93 E-value=2.9e-26 Score=229.40 Aligned_cols=185 Identities=18% Similarity=0.226 Sum_probs=126.3
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhc--CCCEEEECCCCCCC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFC--KVDGIIVPGGFGKR 123 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~--~~dglilpGG~~~~ 123 (326)
.+|+|+ |||. ++-.++.++|+.+|.. +.+.+.+. + .+.+. ++|||||||||++.
T Consensus 8 ~~IlIl-D~g~--~~~~~i~r~lr~~G~~----~~i~p~~~----------~-------~~~i~~~~~dgiILsGGp~s~ 63 (525)
T 1gpm_A 8 HRILIL-DFGS--QYTQLVARRVRELGVY----CELWAWDV----------T-------EAQIRDFNPSGIILSGGPEST 63 (525)
T ss_dssp SEEEEE-ECSC--TTHHHHHHHHHHTTCE----EEEEESCC----------C-------HHHHHHHCCSEEEECCCSSCT
T ss_pred CEEEEE-ECCC--ccHHHHHHHHHHCCCE----EEEEECCC----------C-------HHHHhccCCCEEEECCcCccc
Confidence 589999 9997 6667899999998863 23333221 1 11232 57999999999765
Q ss_pred CCchHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcceeecce
Q psy17159 124 GLEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKH 203 (326)
Q Consensus 124 ~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~lg~~ 203 (326)
.......+.+.+++.++|+||||+|||+|+.++|+++..... ...|++
T Consensus 64 ~~~~~~~~~~~~~~~g~PvLGIC~G~Qlla~~~GG~V~~~~~--------------------------------~e~G~~ 111 (525)
T 1gpm_A 64 TEENSPRAPQYVFEAGVPVFGVCYGMQTMAMQLGGHVEASNE--------------------------------REFGYA 111 (525)
T ss_dssp TSTTCCCCCGGGGTSSSCEEEETHHHHHHHHHHTCEEECCSS--------------------------------CEEEEE
T ss_pred cccCCcchHHHHHHCCCCEEEEChHHHHHHHHcCCEEEeCCC--------------------------------cccceE
Confidence 322211122445577999999999999999999999843210 013555
Q ss_pred eEEEecCCCchHHhhhCC--------CcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEc
Q psy17159 204 ETHFKPEHKSKLKLLYGN--------KDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQ 275 (326)
Q Consensus 204 ~~~~~~~~~s~l~~~~~~--------~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQ 275 (326)
.+.+.. ++.+++.++. ...++. .|++.| ..+ +++++++|+++++. ++|++++++++ +|||
T Consensus 112 ~v~~~~--~~~L~~~l~~~~~~~~~~~~~v~~--~H~~~V-----~~l-p~g~~v~A~s~~~~-i~ai~~~~~~i-~gvQ 179 (525)
T 1gpm_A 112 QVEVVN--DSALVRGIEDALTADGKPLLDVWM--SHGDKV-----TAI-PSDFITVASTESCP-FAIMANEEKRF-YGVQ 179 (525)
T ss_dssp EEEECS--CCTTTTTCCSEECTTSCEEEEEEE--EECSEE-----EEC-CTTCEEEEECSSCS-CSEEEETTTTE-EEES
T ss_pred EEEeCC--CCHhhccCccccccccccceEEEE--Ecccee-----eeC-CCCCEEEEECCCCC-EEEEEECCCCE-EEEe
Confidence 555543 3333333332 113444 455554 345 78999999999998 99999988886 9999
Q ss_pred ccCCCcCCCCCCChHHHHHHHHHH
Q psy17159 276 FHPEYLSRPLRPSPPFLGLILAAA 299 (326)
Q Consensus 276 FHPE~~~~~~~~~~lf~~Fl~~a~ 299 (326)
||||++.++. +.++|++|+..++
T Consensus 180 FHPE~~~~~~-g~~ll~nF~~~i~ 202 (525)
T 1gpm_A 180 FHPEVTHTRQ-GMRMLERFVRDIC 202 (525)
T ss_dssp BCTTSTTSTT-HHHHHHHHHHTTS
T ss_pred cCCCCCcchh-HHHHHHHHHHhhh
Confidence 9999998865 4689999996443
No 17
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=99.93 E-value=8.2e-26 Score=230.15 Aligned_cols=183 Identities=14% Similarity=0.100 Sum_probs=123.5
Q ss_pred ceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCC
Q psy17159 45 TVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRG 124 (326)
Q Consensus 45 ~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~ 124 (326)
+++|+|| ||+. .+..++.+.|+..|. .+.+++.+.. ..+.++|||||+||++.+.
T Consensus 446 Gk~Ilvi-D~gd--sf~~~l~~~l~~~G~----~v~Vv~~d~~------------------~~~~~~DgIIlsGGPg~p~ 500 (645)
T 3r75_A 446 GCRALIV-DAED--HFTAMIAQQLSSLGL----ATEVCGVHDA------------------VDLARYDVVVMGPGPGDPS 500 (645)
T ss_dssp TCEEEEE-ESSC--THHHHHHHHHHHTTC----EEEEEETTCC------------------CCGGGCSEEEECCCSSCTT
T ss_pred CCEEEEE-ECCc--cHHHHHHHHHHHCCC----EEEEEECCCc------------------ccccCCCEEEECCCCCChh
Confidence 4689999 7765 445556666665554 5555555421 1346789999999998875
Q ss_pred Cch------HHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcce
Q psy17159 125 LEG------KIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTM 198 (326)
Q Consensus 125 ~~~------~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~ 198 (326)
..+ +.++|+++++.++|+||||+|||+|+.++|+++.......
T Consensus 501 d~~~p~i~~~~~lI~~a~~~~iPiLGIClG~QlLa~alGG~V~~~~~~~------------------------------- 549 (645)
T 3r75_A 501 DAGDPRIARLYAWLRHLIDEGKPFMAVCLSHQILNAILGIPLVRREVPN------------------------------- 549 (645)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEEEEEEE-------------------------------
T ss_pred hhhhhhHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHhCCEEEcCCCcc-------------------------------
Confidence 433 5677888888999999999999999999999984422110
Q ss_pred eecceeEEEecCCCchHHhhhCCCcceeeecceeeeeCC--cc-cccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEc
Q psy17159 199 RLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNK--KY-VPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQ 275 (326)
Q Consensus 199 ~lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~--~~-v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQ 275 (326)
.|+...+.... .+++...+ |+|.++. +. ...+ +++++++|++++|. ++++++++ + +|||
T Consensus 550 -~G~~~~i~~~~-~~l~~~~~-----------~~~~v~~~h~~~~~~l-p~g~~v~A~s~dg~-i~Ai~~~~--~-~GVQ 611 (645)
T 3r75_A 550 -QGIQVEIDLFG-QRERVGFY-----------NTYVAQTVRDEMDVDG-VGTVAISRDPRTGE-VHALRGPT--F-SSMQ 611 (645)
T ss_dssp -EEEEEEEEETT-EEEEEEEE-----------EEEEEBCSCSEEEETT-TEEEEEEECTTTCB-EEEEEETT--E-EEES
T ss_pred -cccceEEeeec-CcceecCC-----------CcEEEEEehhhccccC-CCCeEEEEEcCCCc-EEEEEcCC--E-EEEE
Confidence 12221111111 22222122 2233321 11 2233 78999999999998 99999875 4 8999
Q ss_pred ccCCCcCCCCCCChHHHHHHHHHHhhh
Q psy17159 276 FHPEYLSRPLRPSPPFLGLILAAAGKL 302 (326)
Q Consensus 276 FHPE~~~~~~~~~~lf~~Fl~~a~~~~ 302 (326)
||||+..++. +++||+||++.+...+
T Consensus 612 FHPE~~~t~~-G~~Ll~nFl~~~~~~~ 637 (645)
T 3r75_A 612 FHAESVLTVD-GPRILGEAITHAIRRE 637 (645)
T ss_dssp SBTTSTTCTT-HHHHHHHHHHHHTTTT
T ss_pred eCCeecCCcc-hHHHHHHHHHHHHhcc
Confidence 9999998865 5699999999987655
No 18
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=99.92 E-value=9.8e-26 Score=196.10 Aligned_cols=178 Identities=21% Similarity=0.281 Sum_probs=111.8
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCC-
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRG- 124 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~- 124 (326)
|||+|| ++ .|+|.++.++|+++|+. +.+++. .+.+.++||||||||++...
T Consensus 1 m~i~vl-~~---~g~~~~~~~~l~~~G~~------~~~~~~------------------~~~~~~~dglil~GG~~~~~~ 52 (186)
T 2ywj_A 1 MIIGVL-AI---QGDVEEHEEAIKKAGYE------AKKVKR------------------VEDLEGIDALIIPGGESTAIG 52 (186)
T ss_dssp CEEEEE-CS---SSCCHHHHHHHHHTTSE------EEEECS------------------GGGGTTCSEEEECCSCHHHHH
T ss_pred CEEEEE-ec---CcchHHHHHHHHHCCCE------EEEECC------------------hHHhccCCEEEECCCCchhhh
Confidence 589999 65 37899999999998863 223331 12567899999999986432
Q ss_pred ----CchHHHHHHHHHHcCCCEEEEehhHHHHHHHhCccc--ccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcce
Q psy17159 125 ----LEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSV--LGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTM 198 (326)
Q Consensus 125 ----~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~--l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~ 198 (326)
..+..+.++ +.++|+||||+|||+|+.++|+++ +++.++.+.+. . + +.
T Consensus 53 ~~~~~~~~~~~i~---~~~~PilGIC~G~Qll~~~~gg~~~~lg~~~~~~~~~---------------~-~-----~~-- 106 (186)
T 2ywj_A 53 KLMKKYGLLEKIK---NSNLPILGTCAGMVLLSKGTGINQILLELMDITVKRN---------------A-Y-----GR-- 106 (186)
T ss_dssp HHHHHTTHHHHHH---TCCCCEEEETHHHHHHSSCCSSCCCCCCCSSEEEETT---------------T-T-----CS--
T ss_pred hhhhccCHHHHHH---hcCCcEEEECHHHHHHHHHhCCCcCccCCCceeEEec---------------c-C-----CC--
Confidence 112333333 678999999999999999998774 22222211111 0 0 00
Q ss_pred eecceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEcccC
Q psy17159 199 RLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHP 278 (326)
Q Consensus 199 ~lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFHP 278 (326)
..+.+.. +.++..+ . .....+.|++.|+ .+.+++++++|++ |+. ++|++++ + ++||||||
T Consensus 107 ~~~~~~~------~~~~~~~--~--~~~~~~~H~~~v~-----~l~~~~~~v~a~s-d~~-~~a~~~~--~-~~gvQfHP 166 (186)
T 2ywj_A 107 QVDSFEK------EIEFKDL--G--KVYGVFIRAPVVD-----KILSDDVEVIARD-GDK-IVGVKQG--K-YMALSFHP 166 (186)
T ss_dssp SSCCEEE------EEEETTT--E--EEEEEESSCCEEE-----EECCTTCEEEEEE-TTE-EEEEEET--T-EEEESSCG
T ss_pred cccceec------ccccccC--C--cEEEEEEecceee-----ecCCCCeEEEEEE-CCE-EEEEeeC--C-EEEEECCC
Confidence 0011111 1111122 1 1223344666553 2225789999999 666 9999974 3 59999999
Q ss_pred CCcCCCCCCChHHHHHHHHHHh
Q psy17159 279 EYLSRPLRPSPPFLGLILAAAG 300 (326)
Q Consensus 279 E~~~~~~~~~~lf~~Fl~~a~~ 300 (326)
|++.. ..++|++|+++|.+
T Consensus 167 E~~~~---g~~l~~~F~~~~~~ 185 (186)
T 2ywj_A 167 ELSED---GYKVYKYFVENCVK 185 (186)
T ss_dssp GGSTT---HHHHHHHHHHHHTC
T ss_pred CcCCc---hhHHHHHHHHHHhh
Confidence 98752 35899999998753
No 19
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=99.92 E-value=2e-24 Score=195.48 Aligned_cols=187 Identities=16% Similarity=0.092 Sum_probs=128.2
Q ss_pred cCCCceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCC
Q psy17159 41 RLNKTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGF 120 (326)
Q Consensus 41 ~~~~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~ 120 (326)
+.-..++|.||-.+.. +|..++.+.|+..|. .+.+...+.. +. ..+.+..+||||||||+
T Consensus 8 ~~~~~~~~~~i~~~~~--~~~~~i~~~l~~~G~----~v~v~~~~~~--~~------------~~~~l~~~Dglil~GG~ 67 (239)
T 1o1y_A 8 HHHHHVRVLAIRHVEI--EDLGMMEDIFREKNW----SFDYLDTPKG--EK------------LERPLEEYSLVVLLGGY 67 (239)
T ss_dssp --CCCCEEEEECSSTT--SSCTHHHHHHHHTTC----EEEEECGGGT--CC------------CSSCGGGCSEEEECCCS
T ss_pred cccceeEEEEEECCCC--CCchHHHHHHHhCCC----cEEEeCCcCc--cc------------cccchhcCCEEEECCCC
Confidence 3344578999944443 677888888888775 3333333211 10 12357789999999998
Q ss_pred CCCCC-------chHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCC
Q psy17159 121 GKRGL-------EGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGN 193 (326)
Q Consensus 121 ~~~~~-------~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~ 193 (326)
+.... ..+.++|+++++.++|+||||+|||+|+.++|+++.....+
T Consensus 68 ~~~~~~~~~~~l~~~~~~i~~~~~~~~PiLGIC~G~QlL~~alGG~v~~~~~g--------------------------- 120 (239)
T 1o1y_A 68 MGAYEEEKYPFLKYEFQLIEEILKKEIPFLGICLGSQMLAKVLGASVYRGKNG--------------------------- 120 (239)
T ss_dssp CCTTCTTTCTHHHHHHHHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEECTTC---------------------------
T ss_pred ccccCCccChhHHHHHHHHHHHHHCCCCEEEEchhHHHHHHHcCCeEecCCCC---------------------------
Confidence 54321 24678889998889999999999999999999887432110
Q ss_pred CCcceeecceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEE
Q psy17159 194 MGGTMRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVA 273 (326)
Q Consensus 194 ~~~~~~lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~G 273 (326)
...|++.+.... ++.+.+.++. .....+.|++.+ .+ +++++++|+++++. +||+++++ + +|
T Consensus 121 ----~~~G~~~v~~~~--~~~l~~~~~~--~~~~~~~H~~~v------~l-p~~~~vlA~s~~~~-iea~~~~~--i-~g 181 (239)
T 1o1y_A 121 ----EEIGWYFVEKVS--DNKFFREFPD--RLRVFQWHGDTF------DL-PRRATRVFTSEKYE-NQGFVYGK--A-VG 181 (239)
T ss_dssp ----CEEEEEEEEECC--CCGGGTTSCS--EEEEEEEESEEE------CC-CTTCEEEEECSSCS-CSEEEETT--E-EE
T ss_pred ----CccccEEEEECC--CCchHHhCCC--CceeEeecCCcc------cc-CCCCEEEEEcCCCC-EEEEEECC--E-EE
Confidence 023555555433 4555554443 355667788765 23 67999999999988 89999975 4 99
Q ss_pred EcccCCCcCCCCCCChHHHHHHHHHH
Q psy17159 274 VQFHPEYLSRPLRPSPPFLGLILAAA 299 (326)
Q Consensus 274 vQFHPE~~~~~~~~~~lf~~Fl~~a~ 299 (326)
||||||++. .++.+|++...
T Consensus 182 vQfHPE~~~------~~~~~~~~~~~ 201 (239)
T 1o1y_A 182 LQFHIEVGA------RTMKRWIEAYK 201 (239)
T ss_dssp ESSBSSCCH------HHHHHHHHHTH
T ss_pred EEeCccCCH------HHHHHHHHHhH
Confidence 999999953 58899987543
No 20
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=99.92 E-value=7.6e-26 Score=225.36 Aligned_cols=183 Identities=18% Similarity=0.161 Sum_probs=123.8
Q ss_pred EEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhc--CCCEEEECCCCCCCC
Q psy17159 47 TIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFC--KVDGIIVPGGFGKRG 124 (326)
Q Consensus 47 ~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~--~~dglilpGG~~~~~ 124 (326)
+|+|| |||+ .+-.++.++|+.+|..+ .+.+.+. + .+.+. ++|||||||||+...
T Consensus 1 mi~il-D~g~--~~~~~i~r~l~~~G~~~----~i~p~~~----------~-------~~~i~~~~~dgiIlsGGp~s~~ 56 (503)
T 2ywb_A 1 MVLVL-DFGS--QYTRLIARRLRELRAFS----LILPGDA----------P-------LEEVLKHRPQALILSGGPRSVF 56 (503)
T ss_dssp CEEEE-ESSC--TTHHHHHHHHHTTTCCE----EEEETTC----------C-------HHHHHTTCCSEEEECCCSSCSS
T ss_pred CEEEE-ECCC--cHHHHHHHHHHHCCCEE----EEEECCC----------C-------HHHHHhcCCCEEEECCCCchhc
Confidence 38999 9997 66778999999988642 3332221 1 12343 459999999997643
Q ss_pred CchHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcceeeccee
Q psy17159 125 LEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHE 204 (326)
Q Consensus 125 ~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~lg~~~ 204 (326)
........+.+++.++|+||||+|||+|+.++|+++..... . ..|++.
T Consensus 57 ~~~~~~~~~~~~~~~~PvLGIC~G~Qlla~~~GG~v~~~~~---~-----------------------------e~G~~~ 104 (503)
T 2ywb_A 57 DPDAPRPDPRLFSSGLPLLGICYGMQLLAQELGGRVERAGR---A-----------------------------EYGKAL 104 (503)
T ss_dssp CTTCCCCCGGGGCSSCCEEEETHHHHHHHHTTTCEEECC-----------------------------------CEEEEE
T ss_pred cCCCcchHHHHHhCCCCEEEECHHHHHHHHHhCCeEeeCCC---C-----------------------------ccceEE
Confidence 22111122444567999999999999999999998843210 0 124444
Q ss_pred EEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEcccCCCcCCC
Q psy17159 205 THFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPEYLSRP 284 (326)
Q Consensus 205 ~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFHPE~~~~~ 284 (326)
+.+.. +.+.+.++....++ +.|++.|. .+ +++++++|+++++. ++|++++++++ +|||||||...++
T Consensus 105 v~~~~---~~l~~~~~~~~~v~--~~H~~~v~-----~l-p~g~~v~A~s~~~~-i~ai~~~~~~~-~gvQFHPE~~~~~ 171 (503)
T 2ywb_A 105 LTRHE---GPLFRGLEGEVQVW--MSHQDAVT-----AP-PPGWRVVAETEENP-VAAIASPDGRA-YGVQFHPEVAHTP 171 (503)
T ss_dssp CSEEC---SGGGTTCCSCCEEE--EECSCEEE-----EC-CTTCEEEEECSSCS-CSEEECTTSSE-EEESBCTTSTTST
T ss_pred EEecC---cHHhhcCCCccEEE--EECCCccc-----cC-CCCCEEEEEECCCC-EEEEEeCCCCE-EEEecCCCccccc
Confidence 43332 23333333322344 44555543 44 78999999999998 99999988886 9999999999876
Q ss_pred CCCChHHHHHHHHHH
Q psy17159 285 LRPSPPFLGLILAAA 299 (326)
Q Consensus 285 ~~~~~lf~~Fl~~a~ 299 (326)
. +.++|++|++.|.
T Consensus 172 ~-g~~ll~~F~~~~~ 185 (503)
T 2ywb_A 172 K-GMQILENFLELAG 185 (503)
T ss_dssp T-HHHHHHHHHHHTT
T ss_pred c-cHHHHHHHHHHhh
Confidence 5 4689999996654
No 21
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=99.92 E-value=1.1e-25 Score=198.23 Aligned_cols=188 Identities=21% Similarity=0.238 Sum_probs=117.6
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCCC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRGL 125 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~~ 125 (326)
|||+|| ||+. +|+.|+.++|+.+|... ..+.+.++... +. .++|||||||| +....
T Consensus 1 m~I~ii-d~~~--g~~~s~~~~l~~~G~~~-~~~~~~~~~~~------------------~~-~~~dglilpG~-g~~~~ 56 (201)
T 1gpw_B 1 MRIGII-SVGP--GNIMNLYRGVKRASENF-EDVSIELVESP------------------RN-DLYDLLFIPGV-GHFGE 56 (201)
T ss_dssp CEEEEE-CCSS--SCCHHHHHHHHHHSTTB-SSCEEEEECSC------------------CS-SCCSEEEECCC-SCSHH
T ss_pred CEEEEE-ecCC--chHHHHHHHHHHcCCCC-CceEEEEECCC------------------cc-cCCCEEEECCC-CcHHH
Confidence 589999 9987 89999999999998211 01223333321 13 67899999885 33211
Q ss_pred -------chHHHHHHHHHHcCCCEEEEehhHHHHHHHhC--ccc--ccccCCcccccCCCCCCccCCeeeccCCCCCCCC
Q psy17159 126 -------EGKIAACKWARENNKPFLGICLGLQAAVIEYG--RSV--LGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNM 194 (326)
Q Consensus 126 -------~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g--~~~--l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~ 194 (326)
.++.++|+++.+.++|+||||+|||+|+.++| +.. +++.++.+... +...
T Consensus 57 ~~~~l~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~~g~~G~~~~l~~~~g~v~~~---------------~~~~---- 117 (201)
T 1gpw_B 57 GMRRLRENDLIDFVRKHVEDERYVVGVCLGMQLLFEESEEAPGVKGLSLIEGNVVKL---------------RSRR---- 117 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCEEEEETHHHHTTSSEETTEEEEECCCSSSEEEEEC---------------CCSS----
T ss_pred HHHHHHhhCHHHHHHHHHHcCCeEEEEChhHHHHHHhhccCCCCCCcceeeeEEEEc---------------CCCC----
Confidence 13567888888899999999999999999886 322 22222221111 0000
Q ss_pred CcceeecceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCC-CCeEEEEEECCCCeEEE
Q psy17159 195 GGTMRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEK-EVRMEIAELRDHPYYVA 273 (326)
Q Consensus 195 ~~~~~lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~d-g~~veaie~~~~~~~~G 273 (326)
....|++.+.... .+ . .....+.|++.|.+ . +++++|++++ |..++|+++++ ++ +|
T Consensus 118 --~~~~g~~~l~~~~--~~-------~--~~~v~~~H~~~v~~-------~-~~~vla~s~~~g~~~~a~~~~~-~i-~g 174 (201)
T 1gpw_B 118 --LPHMGWNEVIFKD--TF-------P--NGYYYFVHTYRAVC-------E-EEHVLGTTEYDGEIFPSAVRKG-RI-LG 174 (201)
T ss_dssp --CSEEEEEEEEESS--SS-------C--CEEEEEEESEEEEE-------C-GGGEEEEEEETTEEEEEEEEET-TE-EE
T ss_pred --CCcccceeeEecc--CC-------C--CCeEEEECcceecc-------C-CCEEEEEEccCCceEEEEEECC-CE-EE
Confidence 0012444333221 11 1 12234445665532 2 5788999876 62389999876 65 99
Q ss_pred EcccCCCcCCCCCCChHHHHHHHHHHhh
Q psy17159 274 VQFHPEYLSRPLRPSPPFLGLILAAAGK 301 (326)
Q Consensus 274 vQFHPE~~~~~~~~~~lf~~Fl~~a~~~ 301 (326)
||||||++. + ...++|++|++.+..+
T Consensus 175 vQfHPE~~~-~-~~~~l~~~f~~~~~~~ 200 (201)
T 1gpw_B 175 FQFHPEKSS-K-IGRKLLEKVIECSLSR 200 (201)
T ss_dssp ESSCGGGSH-H-HHHHHHHHHHHHSSCC
T ss_pred EECCCcccC-H-hHHHHHHHHHHHhhcC
Confidence 999999983 2 2348999999987654
No 22
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=99.92 E-value=4e-24 Score=189.31 Aligned_cols=186 Identities=18% Similarity=0.167 Sum_probs=123.1
Q ss_pred eEEEEEcccCCCchh-HHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCC
Q psy17159 46 VTIGLVGKYTKFEDC-YASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRG 124 (326)
Q Consensus 46 ~~I~iigdyg~~~~~-~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~ 124 (326)
++|+|+ +|+. .+ ..++.++|+.+|+. +. .+... +.+.++|+||||||++...
T Consensus 3 ~~i~il-~~~~--~~~~~~~~~~l~~~g~~----~~--~~~~~------------------~~~~~~d~lil~Gg~~~~~ 55 (213)
T 3d54_D 3 PRACVV-VYPG--SNCDRDAYHALEINGFE----PS--YVGLD------------------DKLDDYELIILPGGFSYGD 55 (213)
T ss_dssp CEEEEE-CCTT--EEEHHHHHHHHHTTTCE----EE--EECTT------------------CCCSSCSEEEECEECGGGG
T ss_pred cEEEEE-EcCC--CCccHHHHHHHHHCCCE----EE--EEecC------------------CCcccCCEEEECCCCchhh
Confidence 589999 8875 33 25788888887752 22 22211 1356899999999865321
Q ss_pred ---------CchHHHHHHHHHHcCCCEEEEehhHHHHHHH--hCcccccccCCcccccCCCCCCccCCeeeccCCCCCCC
Q psy17159 125 ---------LEGKIAACKWARENNKPFLGICLGLQAAVIE--YGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGN 193 (326)
Q Consensus 125 ---------~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~--~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~ 193 (326)
...+.++|+++.+.++|+||||+|+|+|+.+ +++++.... .
T Consensus 56 ~~~~~~~~~~~~~~~~l~~~~~~~~pilgIC~G~qlLa~aGll~g~v~~~~---------~------------------- 107 (213)
T 3d54_D 56 YLRPGAVAAREKIAFEIAKAAERGKLIMGICNGFQILIEMGLLKGALLQNS---------S------------------- 107 (213)
T ss_dssp CSSTTHHHHTSTTHHHHHHHHHHTCEEEECHHHHHHHHHHTSSCSEEECCS---------S-------------------
T ss_pred hhccccccccHHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCCeecCC---------C-------------------
Confidence 2346788898888899999999999999998 555442110 0
Q ss_pred CCcceeecceeEEEecCCCchHHhhhCCCcceee--ecce-eeeeCCcccccccCCCeEEEEEcCC--C--CeEEEEEEC
Q psy17159 194 MGGTMRLGKHETHFKPEHKSKLKLLYGNKDKIEE--RHRH-RYEVNKKYVPDYEKHGFLFTGVDEK--E--VRMEIAELR 266 (326)
Q Consensus 194 ~~~~~~lg~~~~~~~~~~~s~l~~~~~~~~~v~~--~h~h-~~~vn~~~v~~l~~~gl~v~a~~~d--g--~~veaie~~ 266 (326)
+....|++.+.+... ++.+.+.++....+.. .|++ +|.+. ++++.++|++++ | ..++|++++
T Consensus 108 --~~~~~g~~~v~~~~~-~~~l~~~~~~~~~~~~~~~H~~~s~~~~--------~~~~~~~a~~~~~ng~~~~i~a~~~~ 176 (213)
T 3d54_D 108 --GKFICKWVDLIVENN-DTPFTNAFEKGEKIRIPIAHGFGRYVKI--------DDVNVVLRYVKDVNGSDERIAGVLNE 176 (213)
T ss_dssp --SSCBCCEEEEEECCC-SSTTSTTSCTTCEEEEECCBSSCEEECS--------SCCEEEEEESSCSSCCGGGEEEEECS
T ss_pred --CceEeeeEEEEeCCC-CCceeeccCCCCEEEEEeecCceEEEec--------CCCcEEEEEcCCCCCCccceeEEEcC
Confidence 001235566655422 5555555543212333 4443 77653 358899999876 5 249999987
Q ss_pred CCCeEEEEcccCCCcCCC----CCCChHHHHHHHHH
Q psy17159 267 DHPYYVAVQFHPEYLSRP----LRPSPPFLGLILAA 298 (326)
Q Consensus 267 ~~~~~~GvQFHPE~~~~~----~~~~~lf~~Fl~~a 298 (326)
+.++ +|||||||++... ....+||++|++.+
T Consensus 177 ~~~~-~gvQfHPE~~~~~~~~~~~g~~l~~~f~~~~ 211 (213)
T 3d54_D 177 SGNV-FGLMPHPERAVEELIGGEDGKKVFQSILNYL 211 (213)
T ss_dssp SSCE-EEECSCSTTTTSTTTTCSTTSHHHHHHHHHC
T ss_pred CCCE-EEEeCCHHHhcCHhhhcCccHHHHHHHHHHh
Confidence 7665 9999999998732 33468999999876
No 23
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=99.90 E-value=2.2e-24 Score=202.86 Aligned_cols=207 Identities=17% Similarity=0.128 Sum_probs=121.5
Q ss_pred ceEEEEEcccCCCc--------hhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEE
Q psy17159 45 TVTIGLVGKYTKFE--------DCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIV 116 (326)
Q Consensus 45 ~~~I~iigdyg~~~--------~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglil 116 (326)
++.|||+...+... =+..|+.++|+.+|+. +.+++.+. +++ ++.+.++.+|||||
T Consensus 30 ~P~IGI~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~----~~vv~~~~----------~~~---~i~~~l~~~dglil 92 (315)
T 1l9x_A 30 KPIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGAR----VVPVRLDL----------TEK---DYEILFKSINGILF 92 (315)
T ss_dssp CCEEEEECEECCSHHHHTTCSEEEEHHHHHHHHHTTCE----EEEECSSC----------CHH---HHHHHHHHSSEEEE
T ss_pred CCEEEEECCcccccccccCcceehHHHHHHHHHHCCCE----EEEEecCC----------CHH---HHHHHHhcCCEEEE
Confidence 46899996543211 1234688899988763 33333321 111 12234578999999
Q ss_pred CCCCCCCCCc-------hHHHHHHHHHHc--CCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccC
Q psy17159 117 PGGFGKRGLE-------GKIAACKWAREN--NKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMP 187 (326)
Q Consensus 117 pGG~~~~~~~-------~~~~~i~~~~~~--~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~ 187 (326)
|||+++.... .+++.++++.+. ++|+||||+|||+|+.++|+++.. .+. ... | ...|+ ....
T Consensus 93 ~GG~~~v~p~~~~~~~~~l~~~~~~~~~~g~~~PiLGIC~G~Qll~~a~GG~~~~-~~~--~~~---g--~~~p~-~~~~ 163 (315)
T 1l9x_A 93 PGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGECLL-TAT--DTV---D--VAMPL-NFTG 163 (315)
T ss_dssp CCCCCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHHHHHHHHHHHSSCCC-EEE--EEE---E--EEECC-EECS
T ss_pred eCCCcccChhhhhHHHHHHHHHHHHHHhcCCCceEEEEChHHHHHHHHhCCcccc-ccc--ccc---C--CCCCe-eecc
Confidence 9998663221 133333333333 599999999999999999987521 110 000 0 01111 0000
Q ss_pred CCCCCCCCcceeecceeEEEecCCCchHHhhh--------CCCcceeeecceeeeeCCccccc--ccCCCeEEEEEcCCC
Q psy17159 188 EHNPGNMGGTMRLGKHETHFKPEHKSKLKLLY--------GNKDKIEERHRHRYEVNKKYVPD--YEKHGFLFTGVDEKE 257 (326)
Q Consensus 188 ~~~~~~~~~~~~lg~~~~~~~~~~~s~l~~~~--------~~~~~v~~~h~h~~~vn~~~v~~--l~~~gl~v~a~~~dg 257 (326)
. .. ++.+++.+ +... +..+ .|+|.|++++++. ..+++++++|+++||
T Consensus 164 -------------------~-~~-~s~L~~~~~~~~~~~l~~~~-~~~~-~H~~~V~~~~~~~~~~l~~g~~v~A~s~dg 220 (315)
T 1l9x_A 164 -------------------G-QL-HSRMFQNFPTELLLSLAVEP-LTAN-FHKWSLSVKNFTMNEKLKKFFNVLTTNTDG 220 (315)
T ss_dssp -------------------T-TT-TCSTTTTSCHHHHHHHHHSC-CEEE-EEEEECBHHHHHTCHHHHHHEEEEEEEESS
T ss_pred -------------------C-CC-CChHHHhcChhhhhhccccc-eEEE-hhhhhcCccccccccccCCCCEEEEEcCCC
Confidence 0 01 33333333 2221 2233 6888887654443 126789999999998
Q ss_pred CeEEEE---EECCCCeEEEEcccCCCcCCC-----CCCC---------hHHHHHHHHHHhhh
Q psy17159 258 VRMEIA---ELRDHPYYVAVQFHPEYLSRP-----LRPS---------PPFLGLILAAAGKL 302 (326)
Q Consensus 258 ~~veai---e~~~~~~~~GvQFHPE~~~~~-----~~~~---------~lf~~Fl~~a~~~~ 302 (326)
. +|++ ++++.++ +|||||||+..++ ..++ +||.+|+++|.+++
T Consensus 221 ~-ve~i~~i~~~~~~i-~GVQfHPE~~~~e~~~~~~~p~s~~a~~~~~~lf~~Fv~~a~~~~ 280 (315)
T 1l9x_A 221 K-IEFISTMEGYKYPV-YGVQWHPEKAPYEWKNLDGISHAPNAVKTAFYLAEFFVNEARKNN 280 (315)
T ss_dssp S-CEEEEEEEESSSCE-EEESSCTTHHHHCCSSCTTCCCCHHHHHHHHHHHHHHHHHHTTSC
T ss_pred C-EEEEEEeccCCCCE-EEEEeCCCCCcccccccccCCccHHHHHHHHHHHHHHHHHHHhcc
Confidence 7 6655 6666675 9999999986522 1133 89999999987544
No 24
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=99.90 E-value=7.4e-23 Score=186.32 Aligned_cols=183 Identities=15% Similarity=0.116 Sum_probs=123.6
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCC-
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRG- 124 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~- 124 (326)
++|.|| .-.. ..+..++...|+..|. .+.++.+...+. .++.++++|+||||||++...
T Consensus 4 ~~vlii-qh~~-~e~~~~i~~~l~~~G~----~v~v~~~~~~~~--------------~p~~~~~~d~lIl~GGp~~~~d 63 (250)
T 3m3p_A 4 KPVMII-QFSA-SEGPGHFGDFLAGEHI----PFQVLRMDRSDP--------------LPAEIRDCSGLAMMGGPMSAND 63 (250)
T ss_dssp CCEEEE-ESSS-SCCCHHHHHHHHHTTC----CEEEEEGGGTCC--------------CCSCGGGSSEEEECCCSSCTTS
T ss_pred CeEEEE-ECCC-CCCHHHHHHHHHHCCC----eEEEEeccCCCc--------------CcCccccCCEEEECCCCCcccc
Confidence 468888 3211 2567788888888876 344444432110 112467899999999987532
Q ss_pred ----CchHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcceee
Q psy17159 125 ----LEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRL 200 (326)
Q Consensus 125 ----~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~l 200 (326)
.....++|+.+++.++|+||||+|||+|+.++|+++..... ...
T Consensus 64 ~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Qll~~~lGG~V~~~~~--------------------------------~e~ 111 (250)
T 3m3p_A 64 DLPWMPTLLALIRDAVAQRVPVIGHCLGGQLLAKAMGGEVTDSPH--------------------------------AEI 111 (250)
T ss_dssp CCTTHHHHHHHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEEEEE--------------------------------EEE
T ss_pred cchHHHHHHHHHHHHHHcCCCEEEECHHHHHHHHHhCCEEEeCCC--------------------------------Cce
Confidence 23467788888889999999999999999999998843210 124
Q ss_pred cceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEcccCCC
Q psy17159 201 GKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPEY 280 (326)
Q Consensus 201 g~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFHPE~ 280 (326)
|++.+.+.. .+....+++-.......++|++.+ .+ +++++++|+++++. ++|++++++ ++|||||||+
T Consensus 112 G~~~v~~~~--~~~~~~l~g~~~~~~v~~~H~~~v------~l-p~~~~vlA~s~~~~-~~a~~~~~~--~~GvQfHPE~ 179 (250)
T 3m3p_A 112 GWVRAWPQH--VPQALEWLGTWDELELFEWHYQTF------SI-PPGAVHILRSEHCA-NQAYVLDDL--HIGFQCHIEM 179 (250)
T ss_dssp EEEEEEECS--SHHHHHHHSCSSCEEEEEEEEEEE------CC-CTTEEEEEEETTEE-EEEEEETTT--EEEESSCTTC
T ss_pred eeEEEEEec--CCCCcccccCCCccEEEEEcccee------ec-CCCCEEEEEeCCCC-EEEEEECCe--eEEEEeCCcC
Confidence 666666543 322233333212355667777765 23 78999999999987 999999875 4999999998
Q ss_pred cCCCCCCChHHHHHHHHH
Q psy17159 281 LSRPLRPSPPFLGLILAA 298 (326)
Q Consensus 281 ~~~~~~~~~lf~~Fl~~a 298 (326)
+. ..+.++++..
T Consensus 180 ~~------~~~~~~l~~~ 191 (250)
T 3m3p_A 180 QA------HMVREWCSIS 191 (250)
T ss_dssp CH------HHHHHHHHHC
T ss_pred CH------HHHHHHHHhh
Confidence 63 4556666543
No 25
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=99.90 E-value=1.7e-23 Score=183.39 Aligned_cols=182 Identities=18% Similarity=0.211 Sum_probs=114.7
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCC-
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRG- 124 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~- 124 (326)
+||+|+ |+. ++|.+..++|+++|+. +.++.+ .+.+.++|+||||||++...
T Consensus 2 m~I~il-~~~---~~~~~~~~~l~~~g~~------~~~~~~------------------~~~l~~~d~iil~GG~~~~~~ 53 (196)
T 2nv0_A 2 LTIGVL-GLQ---GAVREHIHAIEACGAA------GLVVKR------------------PEQLNEVDGLILPGGESTTMR 53 (196)
T ss_dssp CEEEEE-CSS---SCCHHHHHHHHHTTCE------EEEECS------------------GGGGGGCSEEEECCSCHHHHH
T ss_pred cEEEEE-Ecc---CCcHHHHHHHHHCCCE------EEEeCC------------------hHHHhhCCEEEECCCChhhHH
Confidence 689999 773 7889988999988762 333332 12467899999999975421
Q ss_pred ----CchHHHHHHHHHHcCCCEEEEehhHHHHHHHhCccc---ccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcc
Q psy17159 125 ----LEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSV---LGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGT 197 (326)
Q Consensus 125 ----~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~---l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~ 197 (326)
...+.++|+++.+.++|+||||+|||+|+.++|+++ +|+.++.+....
T Consensus 54 ~~~~~~~~~~~i~~~~~~~~pilgIC~G~q~l~~~~gg~~~~~lg~~~~~~~~~~------------------------- 108 (196)
T 2nv0_A 54 RLIDTYQFMEPLREFAAQGKPMFGTCAGLIILAKEIAGSDNPHLGLLNVVVERNS------------------------- 108 (196)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCEEEETHHHHHHSBCCC----CCCCCSCEEEECCC-------------------------
T ss_pred HHhhhHHHHHHHHHHHHCCCcEEEECHHHHHHHHHhcCCCCCcccCCceeEeccC-------------------------
Confidence 123467888888899999999999999999988754 233222211100
Q ss_pred eeecceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEccc
Q psy17159 198 MRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFH 277 (326)
Q Consensus 198 ~~lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFH 277 (326)
.|.....+.. ++.+.. ++.. +.....|++.+ ..+ +++++++|++ |+. +++++.. + ++|+|||
T Consensus 109 --~g~~~~~~~~--~~~~~~-~g~~--~~~~~~h~~~v-----~~~-~~~~~v~a~~-d~~-~~a~~~~--~-~~gvQfH 170 (196)
T 2nv0_A 109 --FGRQVDSFEA--DLTIKG-LDEP--FTGVFIRAPHI-----LEA-GENVEVLSEH-NGR-IVAAKQG--Q-FLGCSFH 170 (196)
T ss_dssp --SCTTTSEEEE--EECCTT-CSSC--EEEEEESCCEE-----EEE-CTTCEEEEEE-TTE-EEEEEET--T-EEEESSC
T ss_pred --CCcccccccC--Cccccc-CCCc--eEEEEEeccee-----ccc-CCCcEEEEEE-CCE-EEEEEEC--C-EEEEEEC
Confidence 0100000111 122222 2332 22222344433 334 6789999998 565 8999874 4 4999999
Q ss_pred CCCcCCCCCCChHHHHHHHHHHhhh
Q psy17159 278 PEYLSRPLRPSPPFLGLILAAAGKL 302 (326)
Q Consensus 278 PE~~~~~~~~~~lf~~Fl~~a~~~~ 302 (326)
||++.. ..+|++|++.+.+.+
T Consensus 171 PE~~~~----~~l~~~fl~~~~~~~ 191 (196)
T 2nv0_A 171 PELTED----HRVTQLFVEMVEEYK 191 (196)
T ss_dssp TTSSSC----CHHHHHHHHHHHHHH
T ss_pred CccCCc----hHHHHHHHHHHHhhh
Confidence 999753 389999999886544
No 26
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=99.90 E-value=6.1e-24 Score=189.77 Aligned_cols=184 Identities=18% Similarity=0.231 Sum_probs=117.0
Q ss_pred CceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCC
Q psy17159 44 KTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKR 123 (326)
Q Consensus 44 ~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~ 123 (326)
.+++|+|+ ++. ++|.+..++|+++|+. +.+++. .+.+.++|+||||||++..
T Consensus 22 ~~~~I~il-~~~---~~~~~~~~~l~~~G~~------~~~~~~------------------~~~l~~~Dglil~GG~~~~ 73 (219)
T 1q7r_A 22 SNMKIGVL-GLQ---GAVREHVRAIEACGAE------AVIVKK------------------SEQLEGLDGLVLPGGESTT 73 (219)
T ss_dssp CCCEEEEE-SCG---GGCHHHHHHHHHTTCE------EEEECS------------------GGGGTTCSEEEECCCCHHH
T ss_pred CCCEEEEE-eCC---CCcHHHHHHHHHCCCE------EEEECC------------------HHHHhhCCEEEECCCChHH
Confidence 35799999 763 6888888899887752 333432 1246789999999997542
Q ss_pred C-----CchHHHHHHHHHHcCCCEEEEehhHHHHHHHhCccc---ccccCCcccccCCCCCCccCCeeeccCCCCCCCCC
Q psy17159 124 G-----LEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSV---LGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMG 195 (326)
Q Consensus 124 ~-----~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~---l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~ 195 (326)
. ...+.++|+++.+.++|+||||+|||+|+.++|+++ +++.++.+.... . +
T Consensus 74 ~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~QlL~~~~gg~~~~~lg~~~~~~~~~~----------------~-----g 132 (219)
T 1q7r_A 74 MRRLIDRYGLMEPLKQFAAAGKPMFGTCAGLILLAKRIVGYDEPHLGLMDITVERNS----------------F-----G 132 (219)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCEEEETTHHHHHEEEEESSCCCCCCCEEEEEECHH----------------H-----H
T ss_pred HHHHhhhhHHHHHHHHHHHcCCeEEEECHHHHHHHHHhCCCCcCCcCccceEEEecC----------------C-----C
Confidence 1 123467888998999999999999999999988765 222221111000 0 0
Q ss_pred cceeecceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEc
Q psy17159 196 GTMRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQ 275 (326)
Q Consensus 196 ~~~~lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQ 275 (326)
.+.+.+.. +..+.. ++. .+...+.|++. +..+ +++++++|++ |+. +||++.. + ++|||
T Consensus 133 --~~~~~~~~------~~~~~g-~g~--~~~~~~~h~~~-----v~~l-~~~~~v~a~s-dg~-~ea~~~~--~-i~GvQ 190 (219)
T 1q7r_A 133 --RQRESFEA------ELSIKG-VGD--GFVGVFIRAPH-----IVEA-GDGVDVLATY-NDR-IVAARQG--Q-FLGCS 190 (219)
T ss_dssp --CCCCCEEE------EEEETT-TEE--EEEEEESSCCE-----EEEE-CTTCEEEEEE-TTE-EEEEEET--T-EEEES
T ss_pred --ccccceec------CcccCC-CCC--ceEEEEEecce-----eecc-CCCcEEEEEc-CCE-EEEEEEC--C-EEEEE
Confidence 00011100 011111 122 12222334443 3344 6799999998 676 9999983 3 59999
Q ss_pred ccCCCcCCCCCCChHHHHHHHHHHhhh
Q psy17159 276 FHPEYLSRPLRPSPPFLGLILAAAGKL 302 (326)
Q Consensus 276 FHPE~~~~~~~~~~lf~~Fl~~a~~~~ 302 (326)
||||++.. ..+|++|++++.+++
T Consensus 191 fHPE~~~~----~~l~~~fl~~~~~~~ 213 (219)
T 1q7r_A 191 FHPELTDD----HRLMQYFLNMVKEAK 213 (219)
T ss_dssp SCGGGSSC----CHHHHHHHHHHHHHH
T ss_pred ECcccCCC----HHHHHHHHHHHHHhh
Confidence 99999753 389999999887654
No 27
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=99.89 E-value=1.4e-22 Score=182.90 Aligned_cols=186 Identities=15% Similarity=0.142 Sum_probs=123.9
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCC-
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRG- 124 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~- 124 (326)
|||++| .... ..+...+...+...|. .+.++.+...+ . .++.+.++|+|||+||++++.
T Consensus 1 m~i~vi-~h~~-~e~~g~~~~~l~~~g~----~~~~~~~~~~~--~------------~p~~~~~~d~lii~GGp~~~~~ 60 (236)
T 3l7n_A 1 MRIHFI-LHET-FEAPGAYLAWAALRGH----DVSMTKVYRYE--K------------LPKDIDDFDMLILMGGPQSPSS 60 (236)
T ss_dssp CEEEEE-ECCT-TSCCHHHHHHHHHTTC----EEEEEEGGGTC--C------------CCSCGGGCSEEEECCCSSCTTC
T ss_pred CeEEEE-eCCC-CCCchHHHHHHHHCCC----eEEEEeeeCCC--C------------CCCCccccCEEEECCCCCCccc
Confidence 578888 4322 2445566666766664 44554443211 0 112467899999999988742
Q ss_pred -------C--chHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCC
Q psy17159 125 -------L--EGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMG 195 (326)
Q Consensus 125 -------~--~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~ 195 (326)
. ..+.++|+++++.++|+||||+|||+|+.++|+++.....
T Consensus 61 ~~~~~~~~~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~Gg~v~~~~~------------------------------ 110 (236)
T 3l7n_A 61 TKKEFPYYDAQAEVKLIQKAAKSEKIIVGVCLGAQLMGVAYGADYLHSPK------------------------------ 110 (236)
T ss_dssp CTTTCTTCCHHHHHHHHHHHHHTTCEEEEETHHHHHHHHHTTCCCEEEEE------------------------------
T ss_pred ccccCcccchHHHHHHHHHHHHcCCCEEEEchHHHHHHHHhCCEEecCCC------------------------------
Confidence 1 2267889999999999999999999999999988732110
Q ss_pred cceeecceeEEEecC-CCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEE
Q psy17159 196 GTMRLGKHETHFKPE-HKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAV 274 (326)
Q Consensus 196 ~~~~lg~~~~~~~~~-~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~Gv 274 (326)
..+|++.+.+... ..+.+...++. .....|.|++. ..+ +++++++|+++++. ++|+++.+ + ++||
T Consensus 111 --~~~G~~~v~~~~~~~~~~l~~~~~~--~~~v~~~H~~~------~~l-p~~~~vla~s~~~~-~~a~~~~~-~-v~gv 176 (236)
T 3l7n_A 111 --KEIGNYLISLTEAGKMDSYLSDFSD--DLLVGHWHGDM------PGL-PDKAQVLAISQGCP-RQIIKFGP-K-QYAF 176 (236)
T ss_dssp --EEEEEEEEEECTTGGGCGGGTTSCS--EEEEEEEEEEE------CCC-CTTCEEEEECSSCS-CSEEEEET-T-EEEE
T ss_pred --ceeeeEEEEEccCcccChHHhcCCC--CcEEEEecCCc------ccC-CChheEEEECCCCC-EEEEEECC-C-EEEE
Confidence 1246666555431 01233333333 24455666653 233 67999999999998 89999875 4 4999
Q ss_pred cccCCCcCCCCCCChHHHHHHHHHHhh
Q psy17159 275 QFHPEYLSRPLRPSPPFLGLILAAAGK 301 (326)
Q Consensus 275 QFHPE~~~~~~~~~~lf~~Fl~~a~~~ 301 (326)
|||||++ ..++++|++....+
T Consensus 177 QfHPE~~------~~~~~~~~~~~~~~ 197 (236)
T 3l7n_A 177 QCHLEFT------PELVAALIAQEDDL 197 (236)
T ss_dssp SSBSSCC------HHHHHHHHHHCSCH
T ss_pred EeCCCCC------HHHHHHHHHhhhhh
Confidence 9999996 27899999877544
No 28
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=99.89 E-value=1.5e-23 Score=215.24 Aligned_cols=180 Identities=15% Similarity=0.111 Sum_probs=115.5
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKR 123 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~ 123 (326)
.+|+|| |||. ..-..+.+.|+.+|.. +.+.+.+. . .+.+ .++|||||||||++.
T Consensus 30 ~~I~VL-Dfg~--q~~~liar~lre~Gv~----~~ivp~~~----------~-------~e~i~~~~~dGIILsGGp~s~ 85 (697)
T 2vxo_A 30 GAVVIL-DAGA--QYGKVIDRRVRELFVQ----SEIFPLET----------P-------AFAIKEQGFRAIIISGGPNSV 85 (697)
T ss_dssp CCEEEE-EEC----CHHHHHHHHHHTTCC----EEEEETTC----------C-------HHHHHHHTCSEEEEEECC---
T ss_pred CEEEEE-ECCC--chHHHHHHHHHHCCCE----EEEEECCC----------C-------HHHHhhcCCCEEEECCCCCcc
Confidence 479999 9985 2223477888888763 23333321 0 1123 589999999999864
Q ss_pred CCchHHHHHHHHHHcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCCCCcceeecce
Q psy17159 124 GLEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKH 203 (326)
Q Consensus 124 ~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~~~~~lg~~ 203 (326)
...+...+.+.+++.++|+||||+|||+|+.++|+++..... . ..|++
T Consensus 86 ~~~~~~~~~~~i~~~g~PvLGIC~G~QlLa~~lGG~v~~~~~---~-----------------------------e~G~~ 133 (697)
T 2vxo_A 86 YAEDAPWFDPAIFTIGKPVLGICYGMQMMNKVFGGTVHKKSV---R-----------------------------EDGVF 133 (697)
T ss_dssp ----CCCCCGGGTTSSCCEEEEEHHHHHHHHHTTCCBCC---------------------------------------CE
T ss_pred cCccchhHHHHHHhCCCCEEEECHHHHHHHHHhCCeEeecCC---C-----------------------------ccceE
Confidence 211111112233467899999999999999999999843210 0 12555
Q ss_pred eEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEcccCCCcCC
Q psy17159 204 ETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPEYLSR 283 (326)
Q Consensus 204 ~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQFHPE~~~~ 283 (326)
.+.+.. ++.+++.++....++ +.|++.| ..+ +++++++|+++ +. ++|++++++++ +|||||||+..+
T Consensus 134 ~v~~~~--~~~Lf~~l~~~~~v~--~~H~~~V-----~~l-p~g~~vlA~s~-~~-i~ai~~~~~~i-~GvQFHPE~~~t 200 (697)
T 2vxo_A 134 NISVDN--TCSLFRGLQKEEVVL--LTHGDSV-----DKV-ADGFKVVARSG-NI-VAGIANESKKL-YGAQFHPEVGLT 200 (697)
T ss_dssp EEEECT--TSGGGTTCCSEEEEC--CCSSCCB-----SSC-CTTCEEEEEET-TE-EEEEEETTTTE-EEESSCTTSSSS
T ss_pred EEEecC--CChhhhcCCccCcce--eecccce-----ecC-CCCeEEEEEeC-Cc-eEEEEeCCCCE-EEEEecccCCCC
Confidence 555543 455554444322343 4455654 344 78999999995 44 99999999887 999999999987
Q ss_pred CCCCChHHHHHH
Q psy17159 284 PLRPSPPFLGLI 295 (326)
Q Consensus 284 ~~~~~~lf~~Fl 295 (326)
+. +..+|++|+
T Consensus 201 ~~-g~~ll~nFl 211 (697)
T 2vxo_A 201 EN-GKVILKNFL 211 (697)
T ss_dssp TT-HHHHHHHHH
T ss_pred cc-chhhhhhhh
Confidence 75 368999999
No 29
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=99.89 E-value=1.5e-23 Score=185.66 Aligned_cols=182 Identities=15% Similarity=0.142 Sum_probs=111.8
Q ss_pred CCceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCC
Q psy17159 43 NKTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGK 122 (326)
Q Consensus 43 ~~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~ 122 (326)
.++++|+|+ || . +||.++.++|+.+|+. +.+++. .+.+.++|+||||||+..
T Consensus 18 ~~~~~I~ii-~~-~--~~~~~~~~~l~~~g~~------~~~~~~------------------~~~l~~~d~iil~GG~~~ 69 (208)
T 2iss_D 18 GSHMKIGVL-GV-Q--GDVREHVEALHKLGVE------TLIVKL------------------PEQLDMVDGLILPGGEST 69 (208)
T ss_dssp --CCEEEEE-CS-S--SCHHHHHHHHHHTTCE------EEEECS------------------GGGGGGCSEEEECSSCHH
T ss_pred CCCcEEEEE-EC-C--CchHHHHHHHHHCCCE------EEEeCC------------------hHHHhhCCEEEECCCcHH
Confidence 456899999 88 3 7999999999987752 333432 124678999999998532
Q ss_pred CC-----CchHHHHHHHHHHcCCCEEEEehhHHHHHHHhCccc---ccccCCcccccCCCCCCccCCeeeccCCCCCCCC
Q psy17159 123 RG-----LEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSV---LGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNM 194 (326)
Q Consensus 123 ~~-----~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~~~---l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~ 194 (326)
.. ...+.++|+++.+.++|+||||+|||+|+.++|+.. +|+.++.+....
T Consensus 70 ~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~~gg~~~~~lg~~~~~v~~~~---------------------- 127 (208)
T 2iss_D 70 TMIRILKEMDMDEKLVERINNGLPVFATCAGVILLAKRIKNYSQEKLGVLDITVERNA---------------------- 127 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCEEEETHHHHHHEEEEC---CCCCCCEEEEEETTT----------------------
T ss_pred HHHhhhhhhhHHHHHHHHHHCCCeEEEECHHHHHHHHHcCCCCCCCccccceEEEecC----------------------
Confidence 11 123467888888899999999999999999988742 333332221110
Q ss_pred CcceeecceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEE
Q psy17159 195 GGTMRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAV 274 (326)
Q Consensus 195 ~~~~~lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~Gv 274 (326)
.|.....+.. ++.+.. ++.. .+.....|++. +..+ +++++++|++ |+. +++++.. + ++|+
T Consensus 128 -----~g~~~~~~~~--~~~~~~-~~~~-~~~~~~~h~~~-----v~~~-~~~~~v~a~~-d~~-~~a~~~~--~-i~Gv 187 (208)
T 2iss_D 128 -----YGRQVESFET--FVEIPA-VGKD-PFRAIFIRAPR-----IVET-GKNVEILATY-DYD-PVLVKEG--N-ILAC 187 (208)
T ss_dssp -----TCSGGGCEEE--EECCGG-GCSS-CEEEEESSCCE-----EEEE-CSSCEEEEEE-TTE-EEEEEET--T-EEEE
T ss_pred -----CCcccccccC--Cccccc-CCCC-ceEEEEEeCcc-----cccC-CCCcEEEEEE-CCE-EEEEEEC--C-EEEE
Confidence 0000000111 222333 2211 12111223332 3333 6789999998 566 9999874 4 4999
Q ss_pred cccCCCcCCCCCCChHHHHHHHHH
Q psy17159 275 QFHPEYLSRPLRPSPPFLGLILAA 298 (326)
Q Consensus 275 QFHPE~~~~~~~~~~lf~~Fl~~a 298 (326)
|||||+... + .+|++|++.|
T Consensus 188 QfHPE~~~~---~-~l~~~fl~~~ 207 (208)
T 2iss_D 188 TFHPELTDD---L-RLHRYFLEMV 207 (208)
T ss_dssp SSCGGGSSC---C-HHHHHHHTTC
T ss_pred EeCCCcCCc---H-HHHHHHHHHh
Confidence 999999764 2 8999999754
No 30
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=99.89 E-value=1.8e-23 Score=184.02 Aligned_cols=183 Identities=20% Similarity=0.243 Sum_probs=116.1
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCC--
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKR-- 123 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~-- 123 (326)
++|+|| ||+. +|+.|+.++|+++|+. +..+... +.++++|+|||||| |.+
T Consensus 3 ~~I~ii-d~~~--~~~~~~~~~l~~~G~~------~~~~~~~------------------~~l~~~d~lil~G~-g~~~~ 54 (200)
T 1ka9_H 3 MKALLI-DYGS--GNLRSAAKALEAAGFS------VAVAQDP------------------KAHEEADLLVLPGQ-GHFGQ 54 (200)
T ss_dssp CEEEEE-CSSC--SCHHHHHHHHHHTTCE------EEEESST------------------TSCSSCSEEEECCC-SCHHH
T ss_pred cEEEEE-eCCC--ccHHHHHHHHHHCCCe------EEEecCh------------------HHcccCCEEEECCC-CcHHH
Confidence 589999 9986 8999999999998863 2223310 14668999999884 221
Q ss_pred ---CC--chHHHHHHHHHHcCCCEEEEehhHHHHHHH---hCc-ccccccCCcccccCCCCCCccCCeeeccCCCCCCCC
Q psy17159 124 ---GL--EGKIAACKWARENNKPFLGICLGLQAAVIE---YGR-SVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNM 194 (326)
Q Consensus 124 ---~~--~~~~~~i~~~~~~~~PvLGIClG~QlL~~~---~g~-~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~ 194 (326)
.. ..+.++|+++.+.++|+||||+|||+|+.+ +|+ ..+++.++.+.+. +..
T Consensus 55 ~~~~l~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~~~~~Gg~~~l~~~~g~v~~~---------------~~~----- 114 (200)
T 1ka9_H 55 VMRAFQESGFVERVRRHLERGLPFLGICVGMQVLYEGSEEAPGVRGLGLVPGEVRRF---------------RAG----- 114 (200)
T ss_dssp HHHTTSSSCTHHHHHHHHHTTCCEEECTHHHHTTSSEETTSTTCCCCCSSSSEEEEC---------------CSS-----
T ss_pred HHHHHHhcCHHHHHHHHHHcCCeEEEEcHHHHHHHHhccccCCcCCccccccEEEEC---------------CCC-----
Confidence 11 346788999889999999999999999987 453 2333333332211 000
Q ss_pred CcceeecceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCC-CCeEEEEEECCCCeEEE
Q psy17159 195 GGTMRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEK-EVRMEIAELRDHPYYVA 273 (326)
Q Consensus 195 ~~~~~lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~d-g~~veaie~~~~~~~~G 273 (326)
..-..|++.+.+. .+ +..+.+ ....+.|+|.+ +. +++ .+ |++++ |..++++.+++ + ++|
T Consensus 115 -~~~~~G~~~v~~~---~~-l~~~~~----~~~~~~Hs~~~-~~------~~~-~v-a~s~~~g~~~~~~~~~~-~-i~g 174 (200)
T 1ka9_H 115 -RVPQMGWNALEFG---GA-FAPLTG----RHFYFANSYYG-PL------TPY-SL-GKGEYEGTPFTALLAKE-N-LLA 174 (200)
T ss_dssp -SSSEEEEEECEEC---GG-GGGGTT----CEEEEEESEEC-CC------CTT-CC-EEEEETTEEEEEEEECS-S-EEE
T ss_pred -CCCceeEEEEEec---hh-hhcCCC----CCEEEeccccc-CC------CCC-cE-EEEEeCCeEEEEEEeeC-C-EEE
Confidence 0012466666553 23 444443 23455677776 31 223 46 88776 62267777765 5 499
Q ss_pred EcccCCCcCCCCCCChHH---HHHHHHH
Q psy17159 274 VQFHPEYLSRPLRPSPPF---LGLILAA 298 (326)
Q Consensus 274 vQFHPE~~~~~~~~~~lf---~~Fl~~a 298 (326)
||||||++. ....+|| ++|++.+
T Consensus 175 vQfHPE~~~--~~g~~l~~~~~~F~~~~ 200 (200)
T 1ka9_H 175 PQFHPEKSG--KAGLAFLALARRYFEVL 200 (200)
T ss_dssp ESSCTTSSH--HHHHHHHHHHHHHC---
T ss_pred EecCCCcCc--cchhHHHHHHHHHHhhC
Confidence 999999986 2234799 9998753
No 31
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=99.88 E-value=4.3e-23 Score=179.80 Aligned_cols=177 Identities=17% Similarity=0.205 Sum_probs=112.6
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCC-C
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKR-G 124 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~-~ 124 (326)
++|+|+ .+ .+++.++.++|+.+|+.+ . .++. .+.++++||||||||++.. .
T Consensus 3 p~Igi~-~~---~~~~~~~~~~l~~~G~~~----~--~~~~------------------~~~l~~~dglil~GG~~~~~~ 54 (191)
T 2ywd_A 3 GVVGVL-AL---QGDFREHKEALKRLGIEA----K--EVRK------------------KEHLEGLKALIVPGGESTTIG 54 (191)
T ss_dssp CCEEEE-CS---SSCHHHHHHHHHTTTCCC----E--EECS------------------GGGGTTCSEEEECSSCHHHHH
T ss_pred cEEEEE-ec---CCchHHHHHHHHHCCCEE----E--EeCC------------------hhhhccCCEEEECCCChhhhH
Confidence 579999 43 378999999999988642 2 2221 1246789999999996321 1
Q ss_pred ----CchHHHHHHHHHHcC-CCEEEEehhHHHHHHHhCc-cc---ccccCCcccccCCCCCCccCCeeeccCCCCCCCCC
Q psy17159 125 ----LEGKIAACKWARENN-KPFLGICLGLQAAVIEYGR-SV---LGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMG 195 (326)
Q Consensus 125 ----~~~~~~~i~~~~~~~-~PvLGIClG~QlL~~~~g~-~~---l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~~ 195 (326)
.....++|+++.+.+ +|+||||+|||+|+.++|+ ++ +++.++.+.+. + + +
T Consensus 55 ~~~~~~~~~~~i~~~~~~~~~PilGiC~G~Q~l~~~~gg~~~~~~lg~~~~~~~~~---------------~-~-----g 113 (191)
T 2ywd_A 55 KLAREYGIEDEVRKRVEEGSLALFGTCAGAIWLAKEIVGYPEQPRLGVLEAWVERN---------------A-F-----G 113 (191)
T ss_dssp HHHHHTTHHHHHHHHHHTTCCEEEEETHHHHHHEEEETTCTTCCCCCCEEEEEETT---------------C-S-----C
T ss_pred HhhhhhhHHHHHHHHHHCCCCeEEEECHHHHHHHHHhCCCCCCccccccceEEEcC---------------C-c-----C
Confidence 134567888888889 9999999999999999887 43 22222211110 0 0 0
Q ss_pred cceeecceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEEEEc
Q psy17159 196 GTMRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQ 275 (326)
Q Consensus 196 ~~~~lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~GvQ 275 (326)
. ....+.... .+..+ . .+...+.|++.+. .+ +++++++|++ ++. ++++++.+ ++|+|
T Consensus 114 ~--~~~~~~~~~------~~~~~--~--~~~~~~~Hs~~v~-----~l-~~~~~~~a~~-~~~-~~a~~~~~---~~gvQ 170 (191)
T 2ywd_A 114 R--QVESFEEDL------EVEGL--G--SFHGVFIRAPVFR-----RL-GEGVEVLARL-GDL-PVLVRQGK---VLASS 170 (191)
T ss_dssp C--SSSEEEEEE------EETTT--E--EEEEEEESCCEEE-----EE-CTTCEEEEEE-TTE-EEEEEETT---EEEES
T ss_pred C--ccccccccc------cccCC--C--ceeEEEEccccee-----cc-CCCcEEEEEE-CCE-EEEEEECC---EEEEE
Confidence 0 001110000 01111 1 2333445666542 33 6789999999 555 99999864 49999
Q ss_pred ccCCCcCCCCCCChHHHHHHHHH
Q psy17159 276 FHPEYLSRPLRPSPPFLGLILAA 298 (326)
Q Consensus 276 FHPE~~~~~~~~~~lf~~Fl~~a 298 (326)
||||++.. + .+|++|+++|
T Consensus 171 fHPE~~~~---~-~l~~~f~~~~ 189 (191)
T 2ywd_A 171 FHPELTED---P-RLHRYFLELA 189 (191)
T ss_dssp SCGGGSSC---C-HHHHHHHHHH
T ss_pred eCCCCCCC---c-HHHHHHHHHh
Confidence 99998752 3 8999999876
No 32
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G
Probab=99.85 E-value=1.4e-21 Score=175.10 Aligned_cols=197 Identities=12% Similarity=0.113 Sum_probs=113.2
Q ss_pred ceEEEEEcccCCCchhHHHHHHHHHHH---hhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCC
Q psy17159 45 TVTIGLVGKYTKFEDCYASLTRALEHA---SYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFG 121 (326)
Q Consensus 45 ~~~I~iigdyg~~~~~~~Si~~aL~~~---g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~ 121 (326)
+++|+|+ +|. +++.+..++|+++ |+ .++.++. .+.+.++||||||||+.
T Consensus 3 ~~~I~Il-~~~---~~~~~~~~~l~~~~~~G~------~~~~~~~------------------~~~l~~~dglil~GG~~ 54 (227)
T 2abw_A 3 EITIGVL-SLQ---GDFEPHINHFIKLQIPSL------NIIQVRN------------------VHDLGLCDGLVIPGGES 54 (227)
T ss_dssp CEEEEEE-CTT---SCCHHHHHHHHTTCCTTE------EEEEECS------------------HHHHHTCSEEEECCSCH
T ss_pred CcEEEEE-eCC---CCcHHHHHHHHHhccCCe------EEEEEcC------------------ccccccCCEEEECCCcH
Confidence 4799999 765 5788889999987 64 2333331 12567899999999974
Q ss_pred CC-----CC--chHHHHHHHHHHc-CCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccCCCCCCC
Q psy17159 122 KR-----GL--EGKIAACKWAREN-NKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGN 193 (326)
Q Consensus 122 ~~-----~~--~~~~~~i~~~~~~-~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~ 193 (326)
.. .. .++.++|+++.+. ++||||||+|||+|+.++|+.+..-.......++. .++......
T Consensus 55 ~~~~~~~~~d~~~~~~~i~~~~~~~g~PilGIC~G~QlL~~~~gg~~~~~~~~~~~~lG~------~~~~~~~~~----- 123 (227)
T 2abw_A 55 TTVRRCCAYENDTLYNALVHFIHVLKKPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGG------LDITICRNF----- 123 (227)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHTSCCCEEEETHHHHHTEEEEECCCSCCTTGGGSCCCC------EEEEEECCC-----
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhcCCEEEEECHHHHHHHHHhcCCccccccccccccCc------eeEEEEecC-----
Confidence 31 11 3457788888899 99999999999999998876541100000000100 010000000
Q ss_pred CCcceeecc--eeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcC-----CCCeEEEEEEC
Q psy17159 194 MGGTMRLGK--HETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDE-----KEVRMEIAELR 266 (326)
Q Consensus 194 ~~~~~~lg~--~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~-----dg~~veaie~~ 266 (326)
.+. .... ....+ . +- ....+.. ......|++. +..+.+++++++|+++ ++. ++|++..
T Consensus 124 ~g~--~~~~~~~~~~~-~--~~--~~~~g~~--~~~~~~h~~~-----v~~~~~~~~~vla~~~~~~~g~~~-~~a~~~~ 188 (227)
T 2abw_A 124 YGS--QNDSFICSLNI-I--SD--SSAFKKD--LTAACIRAPY-----IREILSDEVKVLATFSHESYGPNI-IAAVEQN 188 (227)
T ss_dssp ------CCEEEEECEE-C--CC--CTTCCTT--CEEEEESCCE-----EEEECCTTCEEEEEEEETTTEEEE-EEEEEET
T ss_pred CCc--ccccccccccc-c--cc--cccCCCc--eeEEEEEcce-----EeecCCCCcEEEEEcccccCCCCc-eEEEEEC
Confidence 000 0000 01111 1 10 0001221 1111123333 2222157899999986 455 8898863
Q ss_pred CCCeEEEEcccCCCcCCCCCCChHHHHHHHHHHhhh
Q psy17159 267 DHPYYVAVQFHPEYLSRPLRPSPPFLGLILAAAGKL 302 (326)
Q Consensus 267 ~~~~~~GvQFHPE~~~~~~~~~~lf~~Fl~~a~~~~ 302 (326)
+ ++|+|||||++.. ..+|++|++.|.++.
T Consensus 189 --~-v~gvQfHPE~~~~----~~l~~~Fl~~~~~~~ 217 (227)
T 2abw_A 189 --N-CLGTVFHPELLPH----TAFQQYFYEKVKNYK 217 (227)
T ss_dssp --T-EEEESSCGGGSSC----CHHHHHHHHHHHHHH
T ss_pred --C-EEEEEECCeeCCC----cHHHHHHHHHHHhhh
Confidence 4 4999999999753 289999999986544
No 33
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=99.79 E-value=8e-21 Score=191.08 Aligned_cols=197 Identities=17% Similarity=0.138 Sum_probs=118.0
Q ss_pred ceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCC-CC
Q psy17159 45 TVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFG-KR 123 (326)
Q Consensus 45 ~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~-~~ 123 (326)
+++|+|| ||+. +++.++.++|+++|+. +.+++..+ ...+..+||||||||.. ..
T Consensus 4 m~~I~Ii-d~~~--g~~~~~~~~l~~~G~~------~~vv~~~~----------------~~~l~~~DglILpGgG~~~~ 58 (555)
T 1jvn_A 4 MPVVHVI-DVES--GNLQSLTNAIEHLGYE------VQLVKSPK----------------DFNISGTSRLILPGVGNYGH 58 (555)
T ss_dssp SCEEEEE-CCSC--SCCHHHHHHHHHTTCE------EEEESSGG----------------GCCSTTCSCEEEEECSCHHH
T ss_pred CCEEEEE-ECCC--CCHHHHHHHHHHCCCE------EEEECCcc----------------ccccccCCEEEECCCCchHh
Confidence 3689999 9975 7888999999998763 22333111 01367899999998421 11
Q ss_pred C-----CchHHHHHHHHHHcCCCEEEEehhHHHHHHHh---Cc-ccccccCCcccccCCCCCCccCCeeeccCCCCCCCC
Q psy17159 124 G-----LEGKIAACKWARENNKPFLGICLGLQAAVIEY---GR-SVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNM 194 (326)
Q Consensus 124 ~-----~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~---g~-~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~~~ 194 (326)
. ..++.++|+++++.++|+||||+|||+|+.++ |+ ..|++.++.+.++... ..+
T Consensus 59 ~~~~l~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~a~~egg~~~~Lg~lgg~v~~~~~~----~~~------------- 121 (555)
T 1jvn_A 59 FVDNLFNRGFEKPIREYIESGKPIMGIXVGLQALFAGSVESPKSTGLNYIDFKLSRFDDS----EKP------------- 121 (555)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCEEEEEHHHHTTEEEETTBTTCCCCCSEEEEEEECCTT----TSC-------------
T ss_pred HhhhhhhccHHHHHHHHHHcCCcEEEEchhhhhhhhhhhcCCCccccCCCCcEEEECCcC----CCC-------------
Confidence 0 12356788888889999999999999999876 32 2344444433322100 000
Q ss_pred CcceeecceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCccccc---ccCCCeEEEEEcCCC--CeEEEEEECCCC
Q psy17159 195 GGTMRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPD---YEKHGFLFTGVDEKE--VRMEIAELRDHP 269 (326)
Q Consensus 195 ~~~~~lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~---l~~~gl~v~a~~~dg--~~veaie~~~~~ 269 (326)
....|++.+.+. ++++..+ +.. ....+.|+|.+.. +.. +.++++.++|+++.+ .++++++. .+
T Consensus 122 --~~~~G~~~v~~~---~~L~~~l-~~~--~~~~~vHS~~~~~--i~~~~~~L~~g~~vlA~s~~~~D~~i~ai~~--~~ 189 (555)
T 1jvn_A 122 --VPEIGWNSCIPS---ENLFFGL-DPY--KRYYFVHSFAAIL--NSEKKKNLENDGWKIAKAKYGSEEFIAAVNK--NN 189 (555)
T ss_dssp --SSEEEEECCCCC---TTCCTTC-CTT--SCEEEEESEECBC--CHHHHHHHHHTTCEEEEEEETTEEEEEEEEE--TT
T ss_pred --CccccceEEEEc---CHHHhhC-CCC--ceEEEEEEEEEEe--cccccccCCCCCEEEEEEcCCCCCeEEEEEe--CC
Confidence 012355544321 2222222 221 1233456666543 121 113577888988743 24999994 35
Q ss_pred eEEEEcccCCCcCCCCCCChHHHHHHHHH
Q psy17159 270 YYVAVQFHPEYLSRPLRPSPPFLGLILAA 298 (326)
Q Consensus 270 ~~~GvQFHPE~~~~~~~~~~lf~~Fl~~a 298 (326)
+ +|||||||.+.. ....+|++|+++.
T Consensus 190 i-~GvQFHPE~s~~--~g~~l~~~Fl~~~ 215 (555)
T 1jvn_A 190 I-FATQFHPEKSGK--AGLNVIENFLKQQ 215 (555)
T ss_dssp E-EEESSBGGGSHH--HHHHHHHHHHTTC
T ss_pred E-EEEEeCcEecCh--hHHHHHHHHHhcc
Confidence 4 999999998631 1247999999865
No 34
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=99.68 E-value=6.3e-16 Score=143.72 Aligned_cols=196 Identities=17% Similarity=0.171 Sum_probs=113.1
Q ss_pred CceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCC-CC-Cchhhcchhh-hhcCCCEEEECCCC
Q psy17159 44 KTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPK-TG-NMAEYHKTWS-DFCKVDGIIVPGGF 120 (326)
Q Consensus 44 ~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~-~~-~~~~~~~~~~-~l~~~dglilpGG~ 120 (326)
+.+||+|+ ..- ......-..|.+.-......+++.++...+-+.... .+ -...|....+ ..+.+||+||+||+
T Consensus 34 rplkI~IL-nlm---p~k~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGap 109 (301)
T 2vdj_A 34 RALKIAIL-NLM---PTKQETEAQLLRLIGNTPLQLDVHLLHMESHLSRNVAQEHLTSFYKTFRDIENEKFDGLIITGAP 109 (301)
T ss_dssp CCEEEEEE-CCC---SSHHHHHHHHHHHHTCSSSCEEEEEECCCC------------CCEECHHHHTTSCEEEEEECCCT
T ss_pred CCceEEEE-eCC---CCcCchHHHHHHHhcCCCCcEEEEEEeccCCCCCCccHHHHhhcccCcccccccccCEEEECCCC
Confidence 34899999 653 344445455555544444456666665432110000 00 0111222222 13679999999998
Q ss_pred CC-------CCCchHHHHHHHHHHcCCCEEEEehhHHHHHHHh-CcccccccCCcccccCCCCCCccCCeeeccCCCCCC
Q psy17159 121 GK-------RGLEGKIAACKWARENNKPFLGICLGLQAAVIEY-GRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPG 192 (326)
Q Consensus 121 ~~-------~~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~-g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~ 192 (326)
-. +.+..+.++++.+.+.++|+||||+|+|++..++ |....... ..
T Consensus 110 ~~~~~~ed~~yw~el~~li~~~~~~~~~~lgIC~GaQ~~l~~~~G~~k~~~~---~K----------------------- 163 (301)
T 2vdj_A 110 VETLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYHHYGVQKYPLK---EK----------------------- 163 (301)
T ss_dssp TTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEE---EE-----------------------
T ss_pred CcCCCcccCchHHHHHHHHHHHHHcCCcEEEEcHHHHHHHHHhCCCccccCC---CC-----------------------
Confidence 42 2234567888888889999999999999966554 43332111 00
Q ss_pred CCCcceeecceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEE
Q psy17159 193 NMGGTMRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYV 272 (326)
Q Consensus 193 ~~~~~~~lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~ 272 (326)
..|......... .+.+...++. .....|.|.-.+..+.+..+ +|++++|.++.+. +++++.++... +
T Consensus 164 ------~~Gv~~~~~~~~-~~pL~~g~~~--~f~~phsr~~~~~~~~v~~~--pga~vLA~S~~~~-~~~~~~~~~~~-~ 230 (301)
T 2vdj_A 164 ------MFGVFEHEVREQ-HVKLLQGFDE--LFFAVHSRHTEVRESDIREV--KELTLLANSEEAG-VHLVIGQEGRQ-V 230 (301)
T ss_dssp ------EEEEEEEEECCS-SCGGGTTCCS--EEEEEEEEEEECCHHHHHTC--TTEEEEEEETTTE-EEEEEEGGGTE-E
T ss_pred ------EEEEEEEEecCC-CCccccCCCC--ceEeeeEeccCcCHHHccCC--CCCEEEEeCCCCc-ceEEEecCCCE-E
Confidence 123333333322 3334333333 23344433233344445554 4999999999988 99999977665 9
Q ss_pred EEcccCCCcC
Q psy17159 273 AVQFHPEYLS 282 (326)
Q Consensus 273 GvQFHPE~~~ 282 (326)
|+|||||+..
T Consensus 231 ~vQgHpEyd~ 240 (301)
T 2vdj_A 231 FALGHSEYSC 240 (301)
T ss_dssp EECSCTTCCT
T ss_pred EEECCCCCCH
Confidence 9999999975
No 35
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}
Probab=99.66 E-value=1.4e-15 Score=141.73 Aligned_cols=195 Identities=14% Similarity=0.094 Sum_probs=111.6
Q ss_pred CceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCC--Cchhhcchhh-hhcCCCEEEECCCC
Q psy17159 44 KTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTG--NMAEYHKTWS-DFCKVDGIIVPGGF 120 (326)
Q Consensus 44 ~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~--~~~~~~~~~~-~l~~~dglilpGG~ 120 (326)
+.+||+|+ ..- ......-..|.++-......+++.++...+-+....+. -...|....+ ..+.+||+||+||+
T Consensus 46 rplkI~IL-nlm---p~k~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGsP 121 (312)
T 2h2w_A 46 RPLEILIL-NLM---PDKIKTEIQLLRLLGNTPLQVNVTLLYTETHKPKHTPIEHILKFYTTFSAVKDRKFDGFIITGAP 121 (312)
T ss_dssp CCEEEEEE-CCC---SSHHHHHHHHHHHHHSSSSCEEEEEECCSCCCCCSSCHHHHHHHCBCGGGTTTCCEEEEEECCCS
T ss_pred CCceEEEE-eCC---CCcCchHHHHHHHhcCCCCcEEEEEEEccCCCCCCccHHHHhhccCCcccccccCcCEEEECCCC
Confidence 34899999 653 33444444454444344445666666543211100000 0111222222 23679999999998
Q ss_pred CC-------CCCchHHHHHHHHHHcCCCEEEEehhHHHHHHHhCc-ccccccCCcccccCCCCCCccCCeeeccCCCCCC
Q psy17159 121 GK-------RGLEGKIAACKWARENNKPFLGICLGLQAAVIEYGR-SVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPG 192 (326)
Q Consensus 121 ~~-------~~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g~-~~l~~~~~~~~~~~~~g~~~~~plv~~~~~~~~~ 192 (326)
-. +.+..+.++++.+.+.++|+||||+|+|++..++|| ...... .
T Consensus 122 ~~~~~~ed~~yw~el~~li~~~~~~~~p~LGIC~GaQ~~l~~~~G~~k~~~~-~-------------------------- 174 (312)
T 2h2w_A 122 VELLPFEEVDYWEELTEIMEWSRHNVYSTMFICWAAQAGLYYFYGIPKYELP-Q-------------------------- 174 (312)
T ss_dssp CTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEE-E--------------------------
T ss_pred CCCCCCccCchHHHHHHHHHHHHHcCCcEEEECHHHHHHHHHhCCCccccCC-C--------------------------
Confidence 42 223456778888888999999999999997766544 321110 0
Q ss_pred CCCcceeecceeEEEecCCCchHHhhhCCCcceeeecceeeeeCCcccccccCCCeEEEEEcCCCCeEEEEEECCCCeEE
Q psy17159 193 NMGGTMRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYV 272 (326)
Q Consensus 193 ~~~~~~~lg~~~~~~~~~~~s~l~~~~~~~~~v~~~h~h~~~vn~~~v~~l~~~gl~v~a~~~dg~~veaie~~~~~~~~ 272 (326)
-..|.....+... +.++ +.++. .....|.|.-.+..+.+... +|++++|.++.+. +++++.++... +
T Consensus 175 -----K~~Gv~~~~~~~~-~pL~-~g~~~--~f~vphsr~~e~~~~~v~~~--pga~vLA~S~~~~-~q~~~~~~~~~-~ 241 (312)
T 2h2w_A 175 -----KLSGVYKHRVAKD-SVLF-RGHDD--FFWAPHSRYTEVKKEDIDKV--PELEILAESDEAG-VYVVANKSERQ-I 241 (312)
T ss_dssp -----EEEEEEEEEESSC-CGGG-TTCCS--EEEEEEEEEEECCHHHHTTC--C-CEEEEEETTTE-EEEEECSSSSE-E
T ss_pred -----CEEEEEEEEEcCC-Cccc-cCCCC--ceEeeEEeccccCHHHccCC--CCCEEEEcCCCCc-ceEEEecCCCE-E
Confidence 0124444444332 3333 33232 23334432223333334432 5999999999988 99999977665 9
Q ss_pred EEcccCCCcC
Q psy17159 273 AVQFHPEYLS 282 (326)
Q Consensus 273 GvQFHPE~~~ 282 (326)
|+|||||+..
T Consensus 242 ~vQgHPEyd~ 251 (312)
T 2h2w_A 242 FVTGHPEYDR 251 (312)
T ss_dssp EECSCTTCCT
T ss_pred EEECCCCCCH
Confidence 9999999975
No 36
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*
Probab=99.33 E-value=1.1e-11 Score=134.17 Aligned_cols=195 Identities=14% Similarity=0.112 Sum_probs=109.8
Q ss_pred CceEEEEEccc-CCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCC
Q psy17159 44 KTVTIGLVGKY-TKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGK 122 (326)
Q Consensus 44 ~~~~I~iigdy-g~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~ 122 (326)
.++||+|| +| |. ++..++.+||+++|+. +.++|+.. +.. ..+.|+++|+||||||++.
T Consensus 1046 ~~pkVaIi-~~~G~--N~~~~~~~A~~~aG~~----~~~v~~~d--l~~------------~~~~l~~~d~lvlPGGfSy 1104 (1303)
T 3ugj_A 1046 ARPKVAVL-REQGV--NSHVEMAAAFHRAGFD----AIDVHMSD--LLG------------GRIGLGNFHALVACGGFSY 1104 (1303)
T ss_dssp CCCEEEEE-ECTTC--CCHHHHHHHHHHTTCE----EEEEEHHH--HHT------------TSCCGGGCSEEEECCSCGG
T ss_pred CCCEEEEE-ecCCc--CCHHHHHHHHHHhCCc----eEEEeecc--ccc------------CcccHhhCCEEEECCCCcc
Confidence 45799999 87 44 5568999999999873 34444421 100 0125789999999999754
Q ss_pred CC--------------CchHHHHHHHHH-HcCCCEEEEehhHHHHHHHhCcccccccCCcccccCCCCCCccCCeeeccC
Q psy17159 123 RG--------------LEGKIAACKWAR-ENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMP 187 (326)
Q Consensus 123 ~~--------------~~~~~~~i~~~~-~~~~PvLGIClG~QlL~~~~g~~~l~~~~~~~~~~~~~g~~~~~plv~~~~ 187 (326)
.+ ...+.+.+++++ +.++|+||||+|||+|+... |+.++.. ..|-+.
T Consensus 1105 gD~l~~g~~~a~~~l~~~~l~~~l~~~~~~~g~pvLGICnG~QlL~e~~-----gllPg~~----------~~p~l~--- 1166 (1303)
T 3ugj_A 1105 GDVLGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNGCQMMSNLR-----ELIPGSE----------LWPRFV--- 1166 (1303)
T ss_dssp GGTTSTTHHHHHHHHTSHHHHHHHHHHHHSSSCEEEEETHHHHHHHTTG-----GGSTTCT----------TCCEEE---
T ss_pred hhhhccchhHHHHHHhchhHHHHHHHHHHhCCCcEEEECHHHHHHHHhc-----CcCCCCC----------CCCeEe---
Confidence 21 023445566654 57899999999999999752 2222210 001000
Q ss_pred CCCCCCCCcceeecceeEEEecCCCchHHhhhCCCc-ceeeecce-eeeeC-CcccccccCCCeEEEEE-----------
Q psy17159 188 EHNPGNMGGTMRLGKHETHFKPEHKSKLKLLYGNKD-KIEERHRH-RYEVN-KKYVPDYEKHGFLFTGV----------- 253 (326)
Q Consensus 188 ~~~~~~~~~~~~lg~~~~~~~~~~~s~l~~~~~~~~-~v~~~h~h-~~~vn-~~~v~~l~~~gl~v~a~----------- 253 (326)
.+. .+....-+..+.+... +|.+.+-+.... .+...|.. +|.+. ++.+.+|+..+..++-+
T Consensus 1167 ~N~----s~~f~~r~~~~~v~~~-~s~~~~~~~g~~~~i~vaHgEG~~~~~~~~~l~~l~~~~~v~~rY~d~~g~~~~~y 1241 (1303)
T 3ugj_A 1167 RNH----SDRFEARFSLVEVTQS-PSLLLQGMVGSQMPIAVSHGEGRVEVRDDAHLAALESKGLVALRYVDNFGKVTETY 1241 (1303)
T ss_dssp CCT----TSSCEEEEEEEEECCC-SCGGGTTCTTCEEEEEEEESSCEEECSSHHHHHHHHHTTCEEEEEBCTTSCBCCST
T ss_pred cCC----CCCeEEeCeEEEECCC-CChhhhccCCCEEeeeeEeCCCCeeeCCHHHHHHHHhCCcEEEEEeCCCCCcccCC
Confidence 000 0011111122333333 555555553211 23455543 34333 23444454555554443
Q ss_pred --cCCCC--eEEEEEECCCCeEEEEcccCCCcCC
Q psy17159 254 --DEKEV--RMEIAELRDHPYYVAVQFHPEYLSR 283 (326)
Q Consensus 254 --~~dg~--~veaie~~~~~~~~GvQFHPE~~~~ 283 (326)
+++|. -|++|-.++.++ +|...|||+...
T Consensus 1242 p~NPNGS~~~IaGi~s~~Grv-lg~MpHPEr~~~ 1274 (1303)
T 3ugj_A 1242 PANPNGSPNGITAVTTENGRV-TIMMPHPERVFR 1274 (1303)
T ss_dssp TTSSSCCGGGEEEEECTTSSE-EEESSBGGGSSB
T ss_pred CCCCCCChhhceEeECCCCCE-EEEcCChHHccc
Confidence 24553 388999998887 999999998654
No 37
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.82 E-value=9.7e-10 Score=96.80 Aligned_cols=94 Identities=16% Similarity=0.070 Sum_probs=65.7
Q ss_pred CceEEEEEcccCCC----chhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCC
Q psy17159 44 KTVTIGLVGKYTKF----EDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGG 119 (326)
Q Consensus 44 ~~~~I~iigdyg~~----~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG 119 (326)
...+|++| +|.+- .++..|+.++|+++|+.+ ..++- .. .++. +..+.+.++|+|++|||
T Consensus 26 ~~~~i~~I-p~As~~~~~~~~~~s~~~a~~~lG~~v------~~~~i---~~----~~~~---~~~~~l~~ad~I~l~GG 88 (206)
T 3l4e_A 26 QGKTVTFI-PTASTVEEVTFYVEAGKKALESLGLLV------EELDI---AT----ESLG---EITTKLRKNDFIYVTGG 88 (206)
T ss_dssp TTCEEEEE-CGGGGGCSCCHHHHHHHHHHHHTTCEE------EECCT---TT----SCHH---HHHHHHHHSSEEEECCS
T ss_pred CCCEEEEE-CCCCCCCCHHHHHHHHHHHHHHcCCeE------EEEEe---cC----CChH---HHHHHHHhCCEEEECCC
Confidence 34799999 88762 137788999999888732 22220 00 1111 12346889999999997
Q ss_pred CCCC-----CCchHHHHHHHHHHcCCCEEEEehhHHHHHH
Q psy17159 120 FGKR-----GLEGKIAACKWARENNKPFLGICLGLQAAVI 154 (326)
Q Consensus 120 ~~~~-----~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~ 154 (326)
.... ...++.+.|+++.++++|++|||+|||+|+.
T Consensus 89 ~~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~sAGa~~l~~ 128 (206)
T 3l4e_A 89 NTFFLLQELKRTGADKLILEEIAAGKLYIGESAGAVITSP 128 (206)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHTTCEEEEETHHHHTTSS
T ss_pred CHHHHHHHHHHCChHHHHHHHHHcCCeEEEECHHHHHhcc
Confidence 4321 1246788999999999999999999999984
No 38
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=98.74 E-value=3.2e-09 Score=94.92 Aligned_cols=91 Identities=13% Similarity=0.147 Sum_probs=64.4
Q ss_pred CceEEEEEcccCCC----chhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCC
Q psy17159 44 KTVTIGLVGKYTKF----EDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGG 119 (326)
Q Consensus 44 ~~~~I~iigdyg~~----~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG 119 (326)
...+|++| +|+.. .++..|+.++|+++|++ +..+.. .++ ..+.|.++|+|+||||
T Consensus 30 ~~~~i~iI-~~a~~~~~~~~~~~~~~~al~~lG~~------~~~v~~--------~~d------~~~~l~~ad~I~lpGG 88 (229)
T 1fy2_A 30 GRRSAVFI-PFAGVTQTWDEYTDKTAEVLAPLGVN------VTGIHR--------VAD------PLAAIEKAEIIIVGGG 88 (229)
T ss_dssp TCCEEEEE-CTTCCSSCHHHHHHHHHHHHGGGTCE------EEETTS--------SSC------HHHHHHHCSEEEECCS
T ss_pred CCCeEEEE-ECCCCCCCHHHHHHHHHHHHHHCCCE------EEEEec--------ccc------HHHHHhcCCEEEECCC
Confidence 34799999 98741 15678888888887753 222210 011 1247889999999997
Q ss_pred CCCC-----CCchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 120 FGKR-----GLEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 120 ~~~~-----~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
.... ...++.+.|+++++.++|++|||+|||+|+..
T Consensus 89 ~~~~~~~~l~~~gl~~~l~~~~~~G~p~~G~sAG~~~l~~~ 129 (229)
T 1fy2_A 89 NTFQLLKESRERGLLAPMADRVKRGALYIGWSAGANLACPT 129 (229)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHHHHHTSSB
T ss_pred cHHHHHHHHHHCChHHHHHHHHHcCCEEEEECHHHHhhccc
Confidence 4322 12357788998888899999999999999964
No 39
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=98.10 E-value=1.4e-05 Score=68.97 Aligned_cols=102 Identities=18% Similarity=0.243 Sum_probs=63.4
Q ss_pred CceEEEEEcccCCCc-hhHHHHHHHHHHHhhhcCCceEEEEeeccc-ccCC----CCCCCchhhcchhhh--hcCCCEEE
Q psy17159 44 KTVTIGLVGKYTKFE-DCYASLTRALEHASYHSNRHLQLKYFDSEL-LSMD----PKTGNMAEYHKTWSD--FCKVDGII 115 (326)
Q Consensus 44 ~~~~I~iigdyg~~~-~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~-l~~~----~~~~~~~~~~~~~~~--l~~~dgli 115 (326)
.++||+|+ -+..+. -.+......|+.+++ ++.+...+... +... .+..+ ...+. ..++|+||
T Consensus 22 ~~~kV~il-l~~g~~~~e~~~~~~~l~~ag~----~v~~vs~~~~~~v~~~~g~~~v~~~-----~~l~~~~~~~~D~li 91 (193)
T 1oi4_A 22 LSKKIAVL-ITDEFEDSEFTSPADEFRKAGH----EVITIEKQAGKTVKGKKGEASVTID-----KSIDEVTPAEFDALL 91 (193)
T ss_dssp CCCEEEEE-CCTTBCTHHHHHHHHHHHHTTC----EEEEEESSTTCEEECTTSSCEEECC-----EEGGGCCGGGCSEEE
T ss_pred cCCEEEEE-ECCCCCHHHHHHHHHHHHHCCC----EEEEEECCCCcceecCCCCeEEECC-----CChHHCCcccCCEEE
Confidence 35689999 543322 245667888887764 33333332211 1100 00000 01112 35789999
Q ss_pred ECCCCCCC---CCchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 116 VPGGFGKR---GLEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 116 lpGG~~~~---~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
||||++.. ....+.++|+++.+.++|+.|||.|.|+|+.+
T Consensus 92 vpGG~~~~~l~~~~~l~~~l~~~~~~gk~i~aIC~G~~lLa~a 134 (193)
T 1oi4_A 92 LPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISA 134 (193)
T ss_dssp ECCBTHHHHHTTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHH
T ss_pred ECCCcCHHHhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence 99996532 23457788999999999999999999999986
No 40
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=97.79 E-value=0.0001 Score=61.73 Aligned_cols=46 Identities=26% Similarity=0.458 Sum_probs=39.0
Q ss_pred CCCEEEECCCCCCC---CCchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 110 KVDGIIVPGGFGKR---GLEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 110 ~~dglilpGG~~~~---~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
++|.||||||++.. ....+.++++++.++++|+.+||.|.++|+.+
T Consensus 63 ~~D~livpGG~~~~~~~~~~~l~~~l~~~~~~~k~i~aiC~G~~~La~a 111 (168)
T 3l18_A 63 EFDALVLPGGKAPEIVRLNEKAVMITRRMFEDDKPVASICHGPQILISA 111 (168)
T ss_dssp GCSEEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred hCCEEEECCCcCHHHhccCHHHHHHHHHHHHCCCEEEEECHhHHHHHHC
Confidence 69999999997532 33457788999999999999999999999975
No 41
>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}
Probab=97.38 E-value=0.0011 Score=57.79 Aligned_cols=111 Identities=11% Similarity=-0.041 Sum_probs=64.8
Q ss_pred CCceEEEEEcccCCCch-hHHHHHHHHHHHhhhcCC-ceEEEEeecccccCCCCCCC-chhhcchhhhhcCCCEEEECCC
Q psy17159 43 NKTVTIGLVGKYTKFED-CYASLTRALEHASYHSNR-HLQLKYFDSELLSMDPKTGN-MAEYHKTWSDFCKVDGIIVPGG 119 (326)
Q Consensus 43 ~~~~~I~iigdyg~~~~-~~~Si~~aL~~~g~~~~~-~v~~~~i~~~~l~~~~~~~~-~~~~~~~~~~l~~~dglilpGG 119 (326)
..+++|+|+ -|..+.. .+......|+.++...+. ..++..+.... .....+.. ...-+...+.+..+|.||||||
T Consensus 6 ~~~~~v~il-l~~g~~~~e~~~~~d~l~~a~~~~~~~~~~v~~vs~~~-~~v~~~~G~~v~~d~~~~~~~~~D~livpGg 83 (209)
T 3er6_A 6 KKNLRVVAL-APTGRYFASIISSLEILETAAEFAEFQGFMTHVVTPNN-RPLIGRGGISVQPTAQWQSFDFTNILIIGSI 83 (209)
T ss_dssp -CCEEEEEE-CCCTTSCHHHHHHHHHHHHHHHHTTCSCEEEEEECTTS-SCEEETTTEEEECSSCGGGCSCCSEEEECCC
T ss_pred CCCeEEEEE-EeCCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCC-CceecCCCeEEeCCcCccccCCCCEEEECCC
Confidence 345789999 5544333 345567777776632221 12333332211 00000000 0000112234568999999999
Q ss_pred CCCC-----CCchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 120 FGKR-----GLEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 120 ~~~~-----~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
.+.. ....+.++++++.++++++.+||-|..+|+.+
T Consensus 84 ~~~~~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~a 124 (209)
T 3er6_A 84 GDPLESLDKIDPALFDWIRELHLKGSKIVAIDTGIFVVAKA 124 (209)
T ss_dssp SCHHHHGGGSCHHHHHHHHHHHHTTCEEEEETTHHHHHHHH
T ss_pred CCchhhhccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence 7532 23457888999999999999999999999986
No 42
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=97.37 E-value=0.00015 Score=61.87 Aligned_cols=47 Identities=21% Similarity=0.210 Sum_probs=39.9
Q ss_pred cCCCEEEECCCCCCC---CCchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 109 CKVDGIIVPGGFGKR---GLEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 109 ~~~dglilpGG~~~~---~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
.++|+||||||+|.. ......++++++.++++|+.+||.|-++|+.+
T Consensus 68 ~~yD~liiPGG~g~~~l~~~~~~~~~l~~~~~~~k~iaaIC~g~~~La~a 117 (177)
T 4hcj_A 68 VEFDAVVFVGGIGCITLWDDWRTQGLAKLFLDNQKIVAGIGSGVVIMANA 117 (177)
T ss_dssp GGCSEEEECCSGGGGGGTTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHT
T ss_pred hHCCEEEECCCccHHHHhhCHHHHHHHHHHHHhCCEEEEecccHHHHHHC
Confidence 579999999998753 23457888999999999999999999999875
No 43
>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}
Probab=97.36 E-value=0.0016 Score=56.48 Aligned_cols=106 Identities=10% Similarity=0.051 Sum_probs=63.0
Q ss_pred ceEEEEEcccCCCch-hHHHHHHHHHHHhhhcCCceEEEEeecc--cccC---CCCCCCchhhcchhhhhcCCCEEEECC
Q psy17159 45 TVTIGLVGKYTKFED-CYASLTRALEHASYHSNRHLQLKYFDSE--LLSM---DPKTGNMAEYHKTWSDFCKVDGIIVPG 118 (326)
Q Consensus 45 ~~~I~iigdyg~~~~-~~~Si~~aL~~~g~~~~~~v~~~~i~~~--~l~~---~~~~~~~~~~~~~~~~l~~~dglilpG 118 (326)
+++|+|+ -|..+.. .+......|+.++...+...++..+... .+.. ..+..+ .+++ -...++|.|||||
T Consensus 5 ~~~v~il-l~~g~~~~e~~~~~dvl~~a~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d--~l~~--~~~~~~D~livpG 79 (202)
T 3gra_A 5 PYRVDFI-LLEHFSMASFTVAMDVLVTANLLRADSFQFTPLSLDGDRVLSDLGLELVAT--ELSA--AALKELDLLVVCG 79 (202)
T ss_dssp CEEEEEE-ECTTBCHHHHHHHHHHHHHHHHHSTTSEEEEEEESSSSEEEBTTSCEEECE--ECCS--GGGTTCSEEEEEC
T ss_pred cEEEEEE-EeCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCceEcCCCCEEECC--Cccc--ccCCCCCEEEEeC
Confidence 4689888 5544333 2445567777766322212333333321 1110 000001 1110 0146799999999
Q ss_pred CCCCCC-CchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 119 GFGKRG-LEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 119 G~~~~~-~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
|.+... ...+.++++++.++++++.+||-|..+|+.+
T Consensus 80 G~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~a 117 (202)
T 3gra_A 80 GLRTPLKYPELDRLLNDCAAHGMALGGLWNGAWFLGRA 117 (202)
T ss_dssp CTTCCSCCTTHHHHHHHHHHHTCEEEEETTHHHHHHHH
T ss_pred CCchhhccHHHHHHHHHHHhhCCEEEEECHHHHHHHHc
Confidence 975431 1567889999999999999999999999986
No 44
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=97.08 E-value=0.00043 Score=62.01 Aligned_cols=48 Identities=23% Similarity=0.358 Sum_probs=39.9
Q ss_pred cCCCEEEECCCCCC---------------CCCchHHHHHHHHHHcCCCEEEEehhHHHHHHHh
Q psy17159 109 CKVDGIIVPGGFGK---------------RGLEGKIAACKWARENNKPFLGICLGLQAAVIEY 156 (326)
Q Consensus 109 ~~~dglilpGG~~~---------------~~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~ 156 (326)
.++|+||||||++. +....+.++++.+.+.++|+.+||.|..+|+.+.
T Consensus 106 ~~~D~livPGG~~~~~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~~~La~ag 168 (242)
T 3l3b_A 106 EEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISPAVVVALL 168 (242)
T ss_dssp GGCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHHHHHHHHH
T ss_pred ccCCEEEEcCCcchhhhhhhhhccccccccCCHHHHHHHHHHHHcCCEEEEECHHHHHHHHhC
Confidence 47899999999752 1224577889999999999999999999999875
No 45
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=97.08 E-value=0.002 Score=65.44 Aligned_cols=99 Identities=15% Similarity=0.100 Sum_probs=60.5
Q ss_pred CceEEEEEcccCCCc-hhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCC
Q psy17159 44 KTVTIGLVGKYTKFE-DCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGK 122 (326)
Q Consensus 44 ~~~~I~iigdyg~~~-~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~ 122 (326)
.+.||+|+=.=|.+. .-...+..+|+++|+. |.++-.... .. .+. .|.+ ..-..+|+||||||...
T Consensus 536 ~grKVaILvadG~fE~~El~~p~~aL~~aGa~----V~vVsp~~g--~G---vD~--t~~~--~~s~~fDAVvlPGG~~~ 602 (688)
T 3ej6_A 536 ATLRVGVLSTTKGGSLDKAKALKEQLEKDGLK----VTVIAEYLA--SG---VDQ--TYSA--ADATAFDAVVVAEGAER 602 (688)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHHHHTTCE----EEEEESSCC--TT---CCE--ETTT--CCGGGCSEEEECTTCCT
T ss_pred cCCEEEEEccCCCccHHHHHHHHHHHHHCCCE----EEEEeCCCC--CC---ccc--Cccc--CChhcCcEEEECCCccc
Confidence 346899981111011 1356678888888873 333322111 00 000 0100 02247999999999532
Q ss_pred --------C---CCchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 123 --------R---GLEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 123 --------~---~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
. .......+++++.+.+|||-.||-|-++|..+
T Consensus 603 ~~~~~~~~d~Lr~~~~a~~fV~e~~~hgKpIAAIchgp~lL~~A 646 (688)
T 3ej6_A 603 VFSGKGAMSPLFPAGRPSQILTDGYRWGKPVAAVGSAKKALQSI 646 (688)
T ss_dssp TTSTTTTCCTTSCTTHHHHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred ccccccchhhhccCHHHHHHHHHHHHcCCEEEEeCccHHHHHHc
Confidence 1 22357788999999999999999999999875
No 46
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=96.98 E-value=0.00048 Score=58.72 Aligned_cols=47 Identities=28% Similarity=0.428 Sum_probs=38.4
Q ss_pred cCCCEEEECCCCC-C---CCCchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 109 CKVDGIIVPGGFG-K---RGLEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 109 ~~~dglilpGG~~-~---~~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
.++|.||||||++ . .....+.++|+++.+.++|+.+||.|.++|+.+
T Consensus 74 ~~~D~livpGG~~~~~~~~~~~~l~~~l~~~~~~gk~i~aiC~G~~~La~a 124 (190)
T 2vrn_A 74 SDYDGLLLPGGTVNPDKLRLEEGAMKFVRDMYDAGKPIAAICHGPWSLSET 124 (190)
T ss_dssp GGCSEEEECCCTHHHHHHTTCHHHHHHHHHHHHTTCCEEEC-CTTHHHHHT
T ss_pred hhCCEEEECCCchhHHHHhhCHHHHHHHHHHHHcCCEEEEECHhHHHHHhC
Confidence 5789999999973 2 233457889999999999999999999999985
No 47
>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2
Probab=96.90 E-value=0.00061 Score=58.13 Aligned_cols=46 Identities=22% Similarity=0.358 Sum_probs=38.6
Q ss_pred CCCEEEECCCCCC--CCCchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 110 KVDGIIVPGGFGK--RGLEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 110 ~~dglilpGG~~~--~~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
++|.||||||.+. .....+.++|+++.++++||.+||.|.++|+.+
T Consensus 63 ~~D~livpGG~~~~~~~~~~l~~~l~~~~~~~k~i~aiC~G~~~La~a 110 (188)
T 2fex_A 63 DIDALVIPGGLSWEKGTAADLGGLVKRFRDRDRLVAGICAAASALGGT 110 (188)
T ss_dssp TCSEEEECCBSHHHHTCCCCCHHHHHHHHHTTCEEEEETHHHHHHHHT
T ss_pred cCCEEEECCCCcccccccHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 7899999999643 223457788999999999999999999999975
No 48
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=96.88 E-value=0.00044 Score=61.24 Aligned_cols=47 Identities=26% Similarity=0.364 Sum_probs=39.4
Q ss_pred cCCCEEEECCCCCCC--------------CCchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 109 CKVDGIIVPGGFGKR--------------GLEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 109 ~~~dglilpGG~~~~--------------~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
+++|+||||||.+.. ....+.++|+++.++++||.+||.|-++|+.+
T Consensus 89 ~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~a 149 (232)
T 1vhq_A 89 AELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKI 149 (232)
T ss_dssp GGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHH
T ss_pred ccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHH
Confidence 579999999997541 13457788999999999999999999999987
No 49
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}
Probab=96.87 E-value=0.00074 Score=56.83 Aligned_cols=47 Identities=17% Similarity=0.168 Sum_probs=38.7
Q ss_pred cCCCEEEECCC--C-CCCC------CchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 109 CKVDGIIVPGG--F-GKRG------LEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 109 ~~~dglilpGG--~-~~~~------~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
.++|.||+||| . +... .....++|+++.++++|+.+||.|.++|+.+
T Consensus 65 ~~~D~livpGG~~~~~~~~l~~~~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~a 120 (175)
T 3cne_A 65 DEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFGEKGKMMIGHCAGAMMFDFT 120 (175)
T ss_dssp GGCSEEEEECCTTGGGGGGCTTCHHHHHHHHHHHHHHHTTCEEEEETTHHHHHHHT
T ss_pred ccCCEEEECCCcCcccHHHHhhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 67999999999 5 5422 2346788899989999999999999999975
No 50
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=96.82 E-value=0.0017 Score=56.58 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=39.4
Q ss_pred cCCCEEEECCCCCCCC-CchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 109 CKVDGIIVPGGFGKRG-LEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 109 ~~~dglilpGG~~~~~-~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
.++|.||||||.+... ...+.++|+++.++++|+.+||.|.++|+.+
T Consensus 62 ~~~D~livpGG~~~~~~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~a 109 (206)
T 3f5d_A 62 ANFNLLVMIGGDSWSNDNKKLLHFVKTAFQKNIPIAAICGAVDFLAKN 109 (206)
T ss_dssp SCCSEEEECCBSCCCCCCHHHHHHHHHHHHTTCCEEEETHHHHHHHHT
T ss_pred cCCCEEEEcCCCChhhcCHHHHHHHHHHHHcCCEEEEECHHHHHHHHc
Confidence 3789999999876432 3357788999999999999999999999975
No 51
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=96.79 E-value=0.00048 Score=59.24 Aligned_cols=100 Identities=12% Similarity=0.062 Sum_probs=60.8
Q ss_pred eEEEEEcccCCCch-hHHHHHHHHHHHhhhcCCceEEEEeecc-cccC---CCCCCCchhhcchhhhh---cCCCEEEEC
Q psy17159 46 VTIGLVGKYTKFED-CYASLTRALEHASYHSNRHLQLKYFDSE-LLSM---DPKTGNMAEYHKTWSDF---CKVDGIIVP 117 (326)
Q Consensus 46 ~~I~iigdyg~~~~-~~~Si~~aL~~~g~~~~~~v~~~~i~~~-~l~~---~~~~~~~~~~~~~~~~l---~~~dglilp 117 (326)
+||+|+ -|..+.. .+......|+.+++ .+.+...+.. .+.. ..+..+ ...+.+ .++|.||||
T Consensus 4 ~~v~il-l~~g~~~~e~~~~~~~l~~ag~----~v~~vs~~~~~~v~~~~g~~v~~d-----~~l~~~~~~~~~D~livp 73 (197)
T 2rk3_A 4 KRALVI-LAKGAEEMETVIPVDVMRRAGI----KVTVAGLAGKDPVQCSRDVVICPD-----ASLEDAKKEGPYDVVVLP 73 (197)
T ss_dssp CEEEEE-ECTTCCHHHHHHHHHHHHHTTC----EEEEEETTCSSCEECTTSCEECCS-----EEHHHHHTTCCCSEEEEC
T ss_pred CEEEEE-ECCCCcHHHHHHHHHHHHHCCC----EEEEEEcCCCCccccCCCCEEeCC-----cCHHHcCCccCCCEEEEC
Confidence 478888 4433332 24456677777764 3333332211 1111 001111 112344 689999999
Q ss_pred CCCCCC----CCchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 118 GGFGKR----GLEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 118 GG~~~~----~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
||.+.. ......++|+++.++++||.+||.|.++|+.+
T Consensus 74 GG~~~~~~l~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~a 115 (197)
T 2rk3_A 74 GGNLGAQNLSESAAVKEILKEQENRKGLIATICAGPTALLAH 115 (197)
T ss_dssp CCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred CCchhHHHhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence 996321 23457788999999999999999999999975
No 52
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}
Probab=96.77 E-value=0.0016 Score=56.74 Aligned_cols=46 Identities=20% Similarity=0.128 Sum_probs=38.9
Q ss_pred CCCEEEECCCCCCCC--CchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 110 KVDGIIVPGGFGKRG--LEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 110 ~~dglilpGG~~~~~--~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
.+|.||||||.+... .....++|+++.+++++|.+||.|..+|+.+
T Consensus 74 ~~D~livpGG~~~~~~~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~a 121 (212)
T 3efe_A 74 SKDLLILPGGTTWSEEIHQPILERIGQALKIGTIVAAICGATDALANM 121 (212)
T ss_dssp TTCEEEECCCSCTTSGGGHHHHHHHHHHHHHTCEEEEETHHHHHHHHT
T ss_pred CCCEEEECCCCccccccCHHHHHHHHHHHHCCCEEEEEcHHHHHHHHc
Confidence 899999999976432 2357788999999999999999999999875
No 53
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=96.71 E-value=0.0043 Score=63.53 Aligned_cols=100 Identities=15% Similarity=0.067 Sum_probs=62.0
Q ss_pred ceEEEEEcccCCCch-hHHHHHHHHHHHhhhcCCceEEEEeecccccC---CCCCCCchhhcchhhhh--cCCCEEEECC
Q psy17159 45 TVTIGLVGKYTKFED-CYASLTRALEHASYHSNRHLQLKYFDSELLSM---DPKTGNMAEYHKTWSDF--CKVDGIIVPG 118 (326)
Q Consensus 45 ~~~I~iigdyg~~~~-~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~---~~~~~~~~~~~~~~~~l--~~~dglilpG 118 (326)
+.||+|+ -...+.+ -..++..+|+.+|+. |.++-.....+.. ..+..+ ...+.. ..+|+|||||
T Consensus 600 grKVaIL-laDGfEe~El~~pvdaLr~AG~~----V~vVS~~~g~V~gs~G~~V~aD-----~t~~~v~s~~fDALVVPG 669 (753)
T 3ttv_A 600 GRVVAIL-LNDEVRSADLLAILKALKAKGVH----AKLLYSRMGEVTADDGTVLPIA-----ATFAGAPSLTVDAVIVPC 669 (753)
T ss_dssp TCEEEEE-CCTTCCHHHHHHHHHHHHHHTCE----EEEEESSSSEEECTTSCEEECC-----EETTTSCGGGCSEEEECC
T ss_pred CCEEEEE-ecCCCCHHHHHHHHHHHHHCCCE----EEEEEcCCCeEEeCCCCEEecc-----cchhhCCCcCCCEEEECC
Confidence 4689988 3222222 366788899988873 3433332211111 000001 011122 3589999999
Q ss_pred CCCCC---CCchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 119 GFGKR---GLEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 119 G~~~~---~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
| +.. .......+|+++.+.++||-+||.|-++|+.+
T Consensus 670 G-g~~~Lr~d~~vl~~Vre~~~~gKpIAAIC~Gp~lLa~A 708 (753)
T 3ttv_A 670 G-NIADIADNGDANYYLMEAYKHLKPIALAGDARKFKATI 708 (753)
T ss_dssp S-CGGGTTTCHHHHHHHHHHHHTTCCEEEEGGGGGGGGGG
T ss_pred C-ChHHhhhCHHHHHHHHHHHhcCCeEEEECchHHHHHHc
Confidence 9 543 23457889999999999999999999999875
No 54
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=96.70 E-value=0.019 Score=58.37 Aligned_cols=47 Identities=17% Similarity=0.087 Sum_probs=38.0
Q ss_pred cCCCEEEECCCC-C----------------CC---CCchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 109 CKVDGIIVPGGF-G----------------KR---GLEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 109 ~~~dglilpGG~-~----------------~~---~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
..+|+||||||. + .. .......+++++.+.+|||-.||.|-++|..+
T Consensus 582 ~~fDAVvlPGG~~g~~~~~~~~~~~~~~~~~~~L~~~~~~~~~v~~~~~~gKpIaAIc~ap~vL~~a 648 (688)
T 2iuf_A 582 VQFDAVVVADGAEGLFGADSFTVEPSAGSGASTLYPAGRPLNILLDAFRFGKTVGALGSGSDALESG 648 (688)
T ss_dssp GGCSEEEECTTCGGGCCTTTTTCCCCTTSCCCSSSCTTHHHHHHHHHHHHTCEEEEEGGGHHHHHHT
T ss_pred cccCeEEecCCCcccccccccccccccccchhhcccChHHHHHHHHHHHcCCEEEEECchHHHHHHc
Confidence 479999999994 3 11 12357888999999999999999999988864
No 55
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=96.63 E-value=0.0058 Score=57.91 Aligned_cols=102 Identities=16% Similarity=0.223 Sum_probs=61.5
Q ss_pred CceEEEEEcccCCCch-hHHHHHHHHHHHhhhcCCceEEEEeeccc-ccC---C-CCCCCchhhcchhhhh--cCCCEEE
Q psy17159 44 KTVTIGLVGKYTKFED-CYASLTRALEHASYHSNRHLQLKYFDSEL-LSM---D-PKTGNMAEYHKTWSDF--CKVDGII 115 (326)
Q Consensus 44 ~~~~I~iigdyg~~~~-~~~Si~~aL~~~g~~~~~~v~~~~i~~~~-l~~---~-~~~~~~~~~~~~~~~l--~~~dgli 115 (326)
.+.+|+|+ -|..+.. .+......|+.+++ .|.+.-.+... +.. . .+..+. ..+.+ ..+|.||
T Consensus 9 ~mkkV~IL-l~dgf~~~El~~p~dvL~~Ag~----~v~vvS~~~g~~V~ss~G~~~i~~d~-----~l~~v~~~~~DaLi 78 (365)
T 3fse_A 9 GKKKVAIL-IEQAVEDTEFIIPCNGLKQAGF----EVVVLGSRMNEKYKGKRGRLSTQADG-----TTTEAIASEFDAVV 78 (365)
T ss_dssp --CEEEEE-CCTTBCHHHHHHHHHHHHHTTC----EEEEEESSSSCCEECTTSCCEECCSE-----ETTTCCGGGCSEEE
T ss_pred CceEEEEE-ECCCCcHHHHHHHHHHHHHCCC----EEEEEECCCCceeecCCCceEEeCCC-----CHhhCCCcCCCEEE
Confidence 34689998 5543332 24446677777664 33443333211 111 0 111110 11223 3689999
Q ss_pred ECCCCCC---CCCchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 116 VPGGFGK---RGLEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 116 lpGG~~~---~~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
||||.+. .....+.++++.+.+.++||.+||.|..+|+.+
T Consensus 79 VPGG~g~~~l~~~~~l~~~Lr~~~~~gk~IaAIC~G~~lLA~A 121 (365)
T 3fse_A 79 IPGGMAPDKMRRNPNTVRFVQEAMEQGKLVAAVCHGPQVLIEG 121 (365)
T ss_dssp ECCBTHHHHHTTCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred EECCcchhhccCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHc
Confidence 9999753 233457888999999999999999999999975
No 56
>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}
Probab=96.60 E-value=0.0071 Score=54.33 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=38.7
Q ss_pred CCCEEEECCCC-CCC---CCchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 110 KVDGIIVPGGF-GKR---GLEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 110 ~~dglilpGG~-~~~---~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
.+|.||||||. +.. ....+.++|+++.+.+++|.+||-|-.+|+.+
T Consensus 84 ~yD~liVPGG~~g~~~l~~~~~l~~~Lr~~~~~gk~IaaICtG~~lLa~A 133 (253)
T 3ewn_A 84 DLTVLFAPGGTDGTLAAASDAETLAFMADRGARAKYITSVCSGSLILGAA 133 (253)
T ss_dssp SCSEEEECCBSHHHHHHTTCHHHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred CCCEEEECCCccchhhhccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence 56999999997 542 33467889999989999999999999999976
No 57
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=96.55 E-value=0.0016 Score=56.93 Aligned_cols=47 Identities=23% Similarity=0.340 Sum_probs=39.6
Q ss_pred cCCCEEEECCCCCC----CCCchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 109 CKVDGIIVPGGFGK----RGLEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 109 ~~~dglilpGG~~~----~~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
..+|+||||||.+. .....+.++|+++.++++||.+||.|-++|+.+
T Consensus 88 ~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaiC~G~~~La~a 138 (224)
T 1u9c_A 88 HGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNA 138 (224)
T ss_dssp SSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred hhCCEEEECCCcchHHHhhcCHHHHHHHHHHHHCCCEEEEEChHHHHHHHc
Confidence 47999999999764 233457889999999999999999999999865
No 58
>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A
Probab=96.46 E-value=0.0026 Score=56.33 Aligned_cols=49 Identities=18% Similarity=0.169 Sum_probs=40.9
Q ss_pred hhcCCCEEEECCCCCCC---CCchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 107 DFCKVDGIIVPGGFGKR---GLEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 107 ~l~~~dglilpGG~~~~---~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
.+..+|.||||||++.. ....+.++|+++.+++++|.+||-|-.+|+.+
T Consensus 62 ~~~~~D~livpGG~g~~~~~~~~~l~~~lr~~~~~g~~v~aiC~G~~~La~a 113 (231)
T 3noq_A 62 DCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVSTGSLVLGAA 113 (231)
T ss_dssp TCCCCSEEEECCSTTHHHHTTCHHHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred HCCcCCEEEECCCCChhhhccCHHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence 45679999999998652 23467888999989999999999999999975
No 59
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=96.40 E-value=0.00087 Score=58.12 Aligned_cols=47 Identities=19% Similarity=0.251 Sum_probs=38.5
Q ss_pred cCCCEEEECCCCCCC----CCchHHHHHHHHHHcCCCEEEEehhH-HHHHHH
Q psy17159 109 CKVDGIIVPGGFGKR----GLEGKIAACKWARENNKPFLGICLGL-QAAVIE 155 (326)
Q Consensus 109 ~~~dglilpGG~~~~----~~~~~~~~i~~~~~~~~PvLGIClG~-QlL~~~ 155 (326)
.++|.||||||.+.. ....+.++|+++.+.++||.+||.|. ++|+.+
T Consensus 65 ~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~~~lLa~a 116 (205)
T 2ab0_A 65 GEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPH 116 (205)
T ss_dssp SCCSEEEECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTT
T ss_pred ccCCEEEECCCcccHHHhccCHHHHHHHHHHHHcCCEEEEECHhHHHHHHHC
Confidence 579999999996421 23457788999999999999999999 999864
No 60
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=96.32 E-value=0.003 Score=58.07 Aligned_cols=97 Identities=12% Similarity=0.074 Sum_probs=60.0
Q ss_pred ceEEEEEcccCCCc-hh-HHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCC
Q psy17159 45 TVTIGLVGKYTKFE-DC-YASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGK 122 (326)
Q Consensus 45 ~~~I~iigdyg~~~-~~-~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~ 122 (326)
..+|++| -+-+.. +. ...+.++++.+|+. .|.+..+... +. .+++. ..+.|.++|+|+++||--.
T Consensus 56 ~~~I~~I-ptAs~~~~~~~~~~~~~f~~lG~~---~v~~L~i~~r--~~---a~~~~----~~~~l~~ad~I~v~GGnt~ 122 (291)
T 3en0_A 56 DAIIGII-PSASREPLLIGERYQTIFSDMGVK---ELKVLDIRDR--AQ---GDDSG----YRLFVEQCTGIFMTGGDQL 122 (291)
T ss_dssp GCEEEEE-CTTCSSHHHHHHHHHHHHHHHCCS---EEEECCCCSG--GG---GGCHH----HHHHHHHCSEEEECCSCHH
T ss_pred CCeEEEE-eCCCCChHHHHHHHHHHHHHcCCC---eeEEEEecCc--cc---cCCHH----HHHHHhcCCEEEECCCCHH
Confidence 3689999 553311 12 23345555555542 3333333211 00 11121 3457889999999998532
Q ss_pred C-----CCchHHHHHHHHHHcC-CCEEEEehhHHHHHH
Q psy17159 123 R-----GLEGKIAACKWARENN-KPFLGICLGLQAAVI 154 (326)
Q Consensus 123 ~-----~~~~~~~~i~~~~~~~-~PvLGIClG~QlL~~ 154 (326)
. ...++.++|+++.+++ +|+.|+|.|+-+|+.
T Consensus 123 ~l~~~l~~t~l~~~L~~~~~~G~~~~~GtSAGA~i~~~ 160 (291)
T 3en0_A 123 RLCGLLADTPLMDRIRQRVHNGEISLAGTSAGAAVMGH 160 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTSSEEEEETHHHHTTSS
T ss_pred HHHHHHHhCCHHHHHHHHHHCCCeEEEEeCHHHHhhhH
Confidence 1 2357888999999999 999999999999874
No 61
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=96.24 E-value=0.0017 Score=55.45 Aligned_cols=47 Identities=17% Similarity=0.217 Sum_probs=38.2
Q ss_pred cCCCEEEECCCC-CCC---CCchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 109 CKVDGIIVPGGF-GKR---GLEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 109 ~~~dglilpGG~-~~~---~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
..+|.||||||. +.. ....+.++|+++.++++|+.+||.|.++|+.+
T Consensus 66 ~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~k~i~aiC~G~~~La~a 116 (190)
T 4e08_A 66 DKFDVVVLPGGLGGSNAMGESSLVGDLLRSQESGGGLIAAICAAPTVLAKH 116 (190)
T ss_dssp CCCSEEEECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred ccCCEEEECCCChHHHHhhhCHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 368999999994 321 23457788999999999999999999999875
No 62
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=96.22 E-value=0.0019 Score=57.98 Aligned_cols=47 Identities=13% Similarity=0.024 Sum_probs=39.3
Q ss_pred cCCCEEEECCCCCCC----CCchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 109 CKVDGIIVPGGFGKR----GLEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 109 ~~~dglilpGG~~~~----~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
.++|+||||||.+.. ....+.++++++.+.++||.+||.|-.+|+.+
T Consensus 104 ~~yD~l~ipGG~g~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~Gp~~La~a 154 (247)
T 3n7t_A 104 HDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPGI 154 (247)
T ss_dssp GGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGC
T ss_pred hhCCEEEEeCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHh
Confidence 479999999998741 23457788999999999999999999999765
No 63
>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}
Probab=96.22 E-value=0.002 Score=56.14 Aligned_cols=48 Identities=21% Similarity=0.220 Sum_probs=39.4
Q ss_pred hcCCCEEEECCCCCCC---CCchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 108 FCKVDGIIVPGGFGKR---GLEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 108 l~~~dglilpGG~~~~---~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
...+|.||||||.+.. ....+.++|+++.+++++|.+||-|-.+|+.+
T Consensus 63 ~~~~D~livpGG~~~~~~~~~~~~~~~l~~~~~~~k~iaaiC~G~~~La~a 113 (211)
T 3mgk_A 63 ENIEKILFVPGGSGTREKVNDDNFINFIGNMVKESKYIISVCTGSALLSKA 113 (211)
T ss_dssp SSSEEEEEECCSTHHHHHTTCHHHHHHHHHHHHHCSEEEECTTHHHHHHHT
T ss_pred CCCCCEEEECCCcchhhhcCCHHHHHHHHHHHHcCCEEEEEchHHHHHHhc
Confidence 4457999999997542 23457888999999999999999999999975
No 64
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=96.21 E-value=0.0016 Score=58.08 Aligned_cols=48 Identities=10% Similarity=-0.013 Sum_probs=39.5
Q ss_pred cCCCEEEECCCCCC----CCCchHHHHHHHHHHcCCCEEEEehhHHHHHHHh
Q psy17159 109 CKVDGIIVPGGFGK----RGLEGKIAACKWARENNKPFLGICLGLQAAVIEY 156 (326)
Q Consensus 109 ~~~dglilpGG~~~----~~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~ 156 (326)
.++|+||||||.+. .....+.++++++.++++||.+||.|-.+|+.+.
T Consensus 97 ~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~ag 148 (243)
T 1rw7_A 97 DDYQIFFASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAIFDGLT 148 (243)
T ss_dssp GGEEEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCB
T ss_pred hhCcEEEECCCCCchhhcccCHHHHHHHHHHHHcCCEEEEECCCHHHHHhcC
Confidence 47899999999763 2234578899999999999999999999888653
No 65
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=96.14 E-value=0.0021 Score=57.51 Aligned_cols=47 Identities=13% Similarity=0.034 Sum_probs=39.4
Q ss_pred cCCCEEEECCCCCC----CCCchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 109 CKVDGIIVPGGFGK----RGLEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 109 ~~~dglilpGG~~~----~~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
.++|+|+||||.+. .....+.++++++.+.++||.+||.|-.+|+.+
T Consensus 97 ~~yD~l~vpGG~~~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~G~~~La~a 147 (244)
T 3kkl_A 97 SDYKVFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGL 147 (244)
T ss_dssp GGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred hhCCEEEEcCCCchhhhcccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHh
Confidence 47999999999864 223457788999999999999999999999865
No 66
>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A
Probab=96.09 E-value=0.0098 Score=51.04 Aligned_cols=45 Identities=27% Similarity=0.124 Sum_probs=32.4
Q ss_pred hcCCCEEEECCCCC-CC---CCchHHHHHHHHHHc-CCCEEEEehhHHHH
Q psy17159 108 FCKVDGIIVPGGFG-KR---GLEGKIAACKWAREN-NKPFLGICLGLQAA 152 (326)
Q Consensus 108 l~~~dglilpGG~~-~~---~~~~~~~~i~~~~~~-~~PvLGIClG~QlL 152 (326)
.+++|.||||||.+ .. ....+.++++++.++ ++++-.||.|..++
T Consensus 71 ~~~yD~lvvPGG~~~~~~l~~~~~l~~~l~~~~~~~~k~iaaiC~g~~l~ 120 (194)
T 4gdh_A 71 AKQYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMICAGTLTA 120 (194)
T ss_dssp HHHCSEEEECCCHHHHHHHHTCHHHHHHHHHHTTCTTCEEEEEGGGGHHH
T ss_pred cccCCEEEECCCchhHhHhhhCHHHHHHHHHhhhcCCceEEeecccccch
Confidence 35689999999953 21 234567788877654 79999999998443
No 67
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=95.87 E-value=0.0064 Score=57.89 Aligned_cols=47 Identities=26% Similarity=0.372 Sum_probs=39.6
Q ss_pred cCCCEEEECCCCCCC---CCchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 109 CKVDGIIVPGGFGKR---GLEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 109 ~~~dglilpGG~~~~---~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
.++|.||||||++.. ....+.++++++.+.++|+.+||.|.++|+.+
T Consensus 281 ~~~D~livpGg~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~g~~~La~a 330 (396)
T 3uk7_A 281 SSYDALVIPGGRAPEYLALNEHVLNIVKEFMNSEKPVASICHGQQILAAA 330 (396)
T ss_dssp GGCSEEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred ccCCEEEECCCcchhhhccCHHHHHHHHHHHHCCCEEEEEchHHHHHHHc
Confidence 579999999997532 23457888999999999999999999999975
No 68
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=95.78 E-value=0.0028 Score=58.12 Aligned_cols=49 Identities=31% Similarity=0.506 Sum_probs=40.1
Q ss_pred hcCCCEEEECCCCCCC-C---CchHHHHHHHHHHcCCCEEEEehhHHHHHHHh
Q psy17159 108 FCKVDGIIVPGGFGKR-G---LEGKIAACKWARENNKPFLGICLGLQAAVIEY 156 (326)
Q Consensus 108 l~~~dglilpGG~~~~-~---~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~ 156 (326)
..++|+||||||.|.. . ...+.++|+++.+++++|.+||.|-.+|+.+.
T Consensus 143 ~~~yD~livPGG~g~~~~l~~~~~l~~~l~~~~~~gk~VaaIC~Gp~~La~a~ 195 (291)
T 1n57_A 143 DSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALR 195 (291)
T ss_dssp TCSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGGT
T ss_pred cccCCEEEecCCcchhhhhhhCHHHHHHHHHHHHcCCEEEEECccHHHHHhhc
Confidence 4678999999997653 2 24577899999999999999999999887653
No 69
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=95.61 E-value=0.0085 Score=57.06 Aligned_cols=47 Identities=26% Similarity=0.417 Sum_probs=39.6
Q ss_pred cCCCEEEECCCCCCC---CCchHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 109 CKVDGIIVPGGFGKR---GLEGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 109 ~~~dglilpGG~~~~---~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
..+|.||||||.+.. ....+.++++++.++++|+.+||.|.++|+.+
T Consensus 88 ~~~D~livpGG~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~La~a 137 (396)
T 3uk7_A 88 SKYDGLVIPGGRAPEYLALTASVVELVKEFSRSGKPIASICHGQLILAAA 137 (396)
T ss_dssp GGCSEEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred ccCCEEEECCCcchhhcccCHHHHHHHHHHHHcCCEEEEECchHHHHHhc
Confidence 579999999997532 23457888999999999999999999999976
No 70
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=95.43 E-value=0.0041 Score=53.93 Aligned_cols=100 Identities=15% Similarity=0.104 Sum_probs=59.8
Q ss_pred eEEEEEcccCCCch-hHHHHHHHHHHHhhhcCCceEEEEeec-ccccC---CCCCCCchhhcchhhhh--cCCCEEEECC
Q psy17159 46 VTIGLVGKYTKFED-CYASLTRALEHASYHSNRHLQLKYFDS-ELLSM---DPKTGNMAEYHKTWSDF--CKVDGIIVPG 118 (326)
Q Consensus 46 ~~I~iigdyg~~~~-~~~Si~~aL~~~g~~~~~~v~~~~i~~-~~l~~---~~~~~~~~~~~~~~~~l--~~~dglilpG 118 (326)
.||+|+ -+..+.. .+......|+.+++ ++.+...+. ..+.. ..+..+. ..+.+ ..+|.|||||
T Consensus 10 ~~v~il-l~~g~~~~e~~~~~~~l~~ag~----~v~~vs~~g~~~v~~~~G~~v~~d~-----~l~~~~~~~~D~livpG 79 (208)
T 3ot1_A 10 KRILVP-VAHGSEEMETVIIVDTLVRAGF----QVTMAAVGDKLQVQGSRGVWLTAEQ-----TLEACSAEAFDALALPG 79 (208)
T ss_dssp CEEEEE-ECTTCCHHHHHHHHHHHHHTTC----EEEEEESSSCSEEECTTSCEEECSE-----EGGGCCGGGCSEEEECC
T ss_pred CeEEEE-ECCCCcHHHHHHHHHHHHHCCC----EEEEEEcCCCcceecCCCcEEeCCC-----CHHHCCCcCCCEEEECC
Confidence 478888 4443332 24456677777764 334443331 11111 0011110 12233 4799999999
Q ss_pred CCC-C---CCCchHHHHHHHHHHcCCCEEEEehhH-HHHHHH
Q psy17159 119 GFG-K---RGLEGKIAACKWARENNKPFLGICLGL-QAAVIE 155 (326)
Q Consensus 119 G~~-~---~~~~~~~~~i~~~~~~~~PvLGIClG~-QlL~~~ 155 (326)
|.+ . .....+.++|+++.++++||.+||.|. .+|+.+
T Consensus 80 G~~~~~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~a~~La~a 121 (208)
T 3ot1_A 80 GVGGAQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQ 121 (208)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHTTTTT
T ss_pred CchHHHHHhhCHHHHHHHHHHHHcCCEEEEEChhHHHHHHHC
Confidence 963 2 133457888999999999999999998 888764
No 71
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Probab=95.19 E-value=0.035 Score=56.93 Aligned_cols=103 Identities=10% Similarity=0.051 Sum_probs=61.5
Q ss_pred ceEEEEEcccCCCch-hHHHHHHHHHHHhhhcCCceEEEEeecccccC---CCCCCCchhhcchhhh--hcCCCEEEECC
Q psy17159 45 TVTIGLVGKYTKFED-CYASLTRALEHASYHSNRHLQLKYFDSELLSM---DPKTGNMAEYHKTWSD--FCKVDGIIVPG 118 (326)
Q Consensus 45 ~~~I~iigdyg~~~~-~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~---~~~~~~~~~~~~~~~~--l~~~dglilpG 118 (326)
++||+|+ -+..+.. ........|+.+|+ .+.+.......+.. ..+..+. ..+. ...+|+|||||
T Consensus 534 ~rkVaIL-l~dGfe~~El~~p~dvL~~AG~----~V~ivS~~gg~V~ss~G~~v~~d~-----~l~~v~~~~yDaViVPG 603 (715)
T 1sy7_A 534 SRRVAII-IADGYDNVAYDAAYAAISANQA----IPLVIGPRRSKVTAANGSTVQPHH-----HLEGFRSTMVDAIFIPG 603 (715)
T ss_dssp TCEEEEE-CCTTBCHHHHHHHHHHHHHTTC----EEEEEESCSSCEEBTTSCEECCSE-----ETTTCCGGGSSEEEECC
T ss_pred CCEEEEE-EcCCCCHHHHHHHHHHHHhcCC----EEEEEECCCCceecCCCceEeccc-----ccccCCcccCCEEEEcC
Confidence 4689999 4432221 24456667777664 34444333211110 0011110 1112 24689999999
Q ss_pred CC-CC---CCCchHHHHHHHHHHcCCCEEEEehhHHHHHHHhC
Q psy17159 119 GF-GK---RGLEGKIAACKWARENNKPFLGICLGLQAAVIEYG 157 (326)
Q Consensus 119 G~-~~---~~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g 157 (326)
|. +. .....+..+|+++.+.++||.+||-|..+|+.++|
T Consensus 604 G~~~~~~l~~~~~l~~~Lr~~~~~gK~IaAIC~G~~lLA~AlG 646 (715)
T 1sy7_A 604 GAKAAETLSKNGRALHWIREAFGHLKAIGATGEAVDLVAKAIA 646 (715)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHHHC
T ss_pred CcccHhhhccCHHHHHHHHHHHhCCCEEEEECHHHHHHHHccC
Confidence 94 32 12345778899999999999999999999998743
No 72
>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}
Probab=92.94 E-value=0.025 Score=50.16 Aligned_cols=47 Identities=17% Similarity=0.164 Sum_probs=34.0
Q ss_pred hhcCCCEEEECCC-CCCC---CCchHHHHHHHHHHcCC-CEEEEehhHHHHHHH
Q psy17159 107 DFCKVDGIIVPGG-FGKR---GLEGKIAACKWARENNK-PFLGICLGLQAAVIE 155 (326)
Q Consensus 107 ~l~~~dglilpGG-~~~~---~~~~~~~~i~~~~~~~~-PvLGIClG~QlL~~~ 155 (326)
....+|.|||||| ++.. ....+.+++ ..+.++ +|.+||-|-.+|+.+
T Consensus 77 ~~~~~D~liVPGG~~g~~~l~~~~~l~~~L--~~~~~~~~IaaIC~G~~lLa~A 128 (236)
T 3bhn_A 77 EVKEQDVVLITSGYRGIPAALQDENFMSAL--KLDPSRQLIGSICAGSFVLHEL 128 (236)
T ss_dssp GGGGCSEEEECCCTTHHHHHHTCHHHHHHC--CCCTTTCEEEEETTHHHHHHHT
T ss_pred cccCCCEEEEcCCccCHhhhccCHHHHHHH--HhCCCCCEEEEEcHHHHHHHHc
Confidence 3568999999999 5542 223455556 334456 999999999999975
No 73
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=89.36 E-value=0.24 Score=44.91 Aligned_cols=89 Identities=17% Similarity=0.136 Sum_probs=45.3
Q ss_pred eCCCCCcccccchhhhhcCCCceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcc
Q psy17159 24 FNPDVKPIYKVRMLRIDRLNKTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHK 103 (326)
Q Consensus 24 ~~~~~~~~y~~p~~~~~~~~~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~ 103 (326)
..|.++.+|--|- -...|||+|+++... . ...+.+.|+..|..+ +++...
T Consensus 13 ~~~~~~~~~~~~~-----~~~~mki~iv~~~~~--~-~~~l~~~L~~~g~~v-------~~~~~~--------------- 62 (278)
T 1z0s_A 13 DIPTTENLYFQGG-----GGGGMRAAVVYKTDG--H-VKRIEEALKRLEVEV-------ELFNQP--------------- 62 (278)
T ss_dssp ----------------------CEEEEEESSST--T-HHHHHHHHHHTTCEE-------EEESSC---------------
T ss_pred CCCccceEEEcCC-----CccceEEEEEeCCcH--H-HHHHHHHHHHCCCEE-------EEcccc---------------
Confidence 3444555544443 122478999977654 2 556777777776532 222110
Q ss_pred hhhhhcCCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEehhH
Q psy17159 104 TWSDFCKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGL 149 (326)
Q Consensus 104 ~~~~l~~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIClG~ 149 (326)
.+.+..+|.+|.-||-| -++.+.+.+... +|++||=.|.
T Consensus 63 -~~~~~~~DlvIvlGGDG-----T~L~aa~~~~~~-~PilGIN~G~ 101 (278)
T 1z0s_A 63 -SEELENFDFIVSVGGDG-----TILRILQKLKRC-PPIFGINTGR 101 (278)
T ss_dssp -CGGGGGSSEEEEEECHH-----HHHHHHTTCSSC-CCEEEEECSS
T ss_pred -ccccCCCCEEEEECCCH-----HHHHHHHHhCCC-CcEEEECCCC
Confidence 12456889999988843 234555554344 9999998873
No 74
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=79.90 E-value=1.1 Score=34.82 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=30.9
Q ss_pred hhcCCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEE
Q psy17159 107 DFCKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGI 145 (326)
Q Consensus 107 ~l~~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGI 145 (326)
.++.+|++|+.-|.-+.........|+.|.+.++|++||
T Consensus 35 ~I~~~~~vIvL~G~~t~~s~wv~~EI~~A~~~gkpIigV 73 (111)
T 1eiw_A 35 TPEDADAVIVLAGLWGTRRDEILGAVDLARKSSKPIITV 73 (111)
T ss_dssp CSSSCSEEEEEGGGTTTSHHHHHHHHHHHTTTTCCEEEE
T ss_pred ccccCCEEEEEeCCCcCCChHHHHHHHHHHHcCCCEEEE
Confidence 678999998777765544456667788888899999998
No 75
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=79.62 E-value=4.1 Score=33.07 Aligned_cols=59 Identities=8% Similarity=0.081 Sum_probs=36.4
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPG 118 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpG 118 (326)
|||.|+ |++..||-..+.+++.......+.++.+..+.... +. +....+.++|+|||.-
T Consensus 1 Mkv~Iv--Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~---------~~---~~~~~~~~~d~ii~Gs 59 (161)
T 3hly_A 1 MSVLIG--YLSDYGYSDRLSQAIGRGLVKTGVAVEMVDLRAVD---------PQ---ELIEAVSSARGIVLGT 59 (161)
T ss_dssp -CEEEE--ECTTSTTHHHHHHHHHHHHHHTTCCEEEEETTTCC---------HH---HHHHHHHHCSEEEEEC
T ss_pred CEEEEE--EECCChHHHHHHHHHHHHHHhCCCeEEEEECCCCC---------HH---HHHHHHHhCCEEEEEc
Confidence 468877 77778998888888877655545555554443211 11 1223456899998864
No 76
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=78.47 E-value=16 Score=32.69 Aligned_cols=93 Identities=11% Similarity=0.008 Sum_probs=53.1
Q ss_pred CceEEEEEcccCCCchhHHHHHHHHHHHhhhcC-CceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCC
Q psy17159 44 KTVTIGLVGKYTKFEDCYASLTRALEHASYHSN-RHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGK 122 (326)
Q Consensus 44 ~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~-~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~ 122 (326)
+..||.||+.... ++ +.....+|..+..+.+ .+|++..-.. ..+ ++..| .+.|+++|.||+.-. +.
T Consensus 3 ~~~kvLiv~G~~~-H~-~~~~~~~l~~~l~~~g~f~V~~~~d~~-~~~------d~~~f---~~~L~~~D~vV~~~~-~~ 69 (281)
T 4e5v_A 3 KPIKTLLITGQNN-HN-WQVSHVVLKQILENSGRFDVDFVISPE-QGK------DMSGF---VLDFSPYQLVVLDYN-GD 69 (281)
T ss_dssp CCEEEEEEESCCS-SC-HHHHHHHHHHHHHHTTSEEEEEEECCC-TTS------CCTTC---CCCCTTCSEEEECCC-SS
T ss_pred CceEEEEEcCCCC-CC-hHHHHHHHHHHHHhcCCEEEEEEeCCc-ccc------chhHH---hhhhhcCCEEEEeCC-CC
Confidence 4578999844332 22 5666667766665544 3444432210 000 11111 125889999997542 22
Q ss_pred CCCchHHHHHHHHHHcCCCEEEEehhH
Q psy17159 123 RGLEGKIAACKWARENNKPFLGICLGL 149 (326)
Q Consensus 123 ~~~~~~~~~i~~~~~~~~PvLGIClG~ 149 (326)
.-.....+.+..+++.+.+++|+..+.
T Consensus 70 ~l~~~~~~~l~~yV~~Ggglv~~H~a~ 96 (281)
T 4e5v_A 70 SWPEETNRRFLEYVQNGGGVVIYHAAD 96 (281)
T ss_dssp CCCHHHHHHHHHHHHTTCEEEEEGGGG
T ss_pred cCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence 222345677777888999999998755
No 77
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=77.48 E-value=6.7 Score=32.67 Aligned_cols=49 Identities=14% Similarity=0.072 Sum_probs=30.0
Q ss_pred hhcCCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEehhHHHHHHHhC
Q psy17159 107 DFCKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGLQAAVIEYG 157 (326)
Q Consensus 107 ~l~~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~g 157 (326)
.++.+|.||.+||-|.....-..+++..++ ++++.+-=--++.|-..++
T Consensus 59 a~~~~DlVittGG~g~~~~D~T~ea~a~~~--~~~l~~~~e~~~~i~~~~~ 107 (172)
T 3kbq_A 59 ALEVSDLVVSSGGLGPTFDDMTVEGFAKCI--GQDLRIDEDALAMIKKKYG 107 (172)
T ss_dssp HHHHCSEEEEESCCSSSTTCCHHHHHHHHH--TCCCEECHHHHHHHHHHHC
T ss_pred HHhcCCEEEEcCCCcCCcccchHHHHHHHc--CCCeeeCHHHHHHHHHHHc
Confidence 345699999999876654444556666554 4555554444555555443
No 78
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=75.29 E-value=3.7 Score=37.28 Aligned_cols=36 Identities=33% Similarity=0.481 Sum_probs=25.2
Q ss_pred hcCCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEehh
Q psy17159 108 FCKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLG 148 (326)
Q Consensus 108 l~~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIClG 148 (326)
...+|.||.-||-| -+..+++.+...++|+|||=.|
T Consensus 73 ~~~~d~vi~~GGDG-----T~l~a~~~~~~~~~pvlgi~~G 108 (307)
T 1u0t_A 73 ADGCELVLVLGGDG-----TFLRAAELARNASIPVLGVNLG 108 (307)
T ss_dssp ---CCCEEEEECHH-----HHHHHHHHHHHHTCCEEEEECS
T ss_pred ccCCCEEEEEeCCH-----HHHHHHHHhccCCCCEEEEeCC
Confidence 35789999988843 2456666666678999999776
No 79
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=71.02 E-value=6.6 Score=33.12 Aligned_cols=80 Identities=11% Similarity=-0.004 Sum_probs=40.1
Q ss_pred CCceEEEEE--cc---cCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcc-hhhhh-cCCCEEE
Q psy17159 43 NKTVTIGLV--GK---YTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHK-TWSDF-CKVDGII 115 (326)
Q Consensus 43 ~~~~~I~ii--gd---yg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~-~~~~l-~~~dgli 115 (326)
.++++|+|| || .|...-|-..+...|+..|+. +....+-++ +++.-.+ +.+.+ +.+|.||
T Consensus 28 ~~~~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~----v~~~~iv~D---------d~~~I~~al~~a~~~~~DlVI 94 (185)
T 3rfq_A 28 LVVGRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFV----VDGVVAVEA---------DEVDIRNALNTAVIGGVDLVV 94 (185)
T ss_dssp -CCEEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEE----EEEEEEECS---------CHHHHHHHHHHHHHTTCSEEE
T ss_pred CCCCEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCE----EEEEEEeCC---------CHHHHHHHHHHHHhCCCCEEE
Confidence 455788888 33 121112455566677777663 232222222 2221111 22233 5799999
Q ss_pred ECCCCCCCCCchHHHHHHHH
Q psy17159 116 VPGGFGKRGLEGKIAACKWA 135 (326)
Q Consensus 116 lpGG~~~~~~~~~~~~i~~~ 135 (326)
.+||-|.....-..++++.+
T Consensus 95 ttGGts~g~~D~t~eal~~l 114 (185)
T 3rfq_A 95 SVGGTGVTPRDVTPESTREI 114 (185)
T ss_dssp EESCCSSSTTCCHHHHHHTT
T ss_pred ECCCCCCCCcccHHHHHHHH
Confidence 99987654433444555443
No 80
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=70.23 E-value=2.7 Score=37.23 Aligned_cols=40 Identities=15% Similarity=0.093 Sum_probs=30.1
Q ss_pred hhhcCCCEEEECCCCCC------------CCCchHHHHHHHHHHcCCCEEEE
Q psy17159 106 SDFCKVDGIIVPGGFGK------------RGLEGKIAACKWARENNKPFLGI 145 (326)
Q Consensus 106 ~~l~~~dglilpGG~~~------------~~~~~~~~~i~~~~~~~~PvLGI 145 (326)
+.|+++|.||+.+-+.. .......++|+.+++++..+++|
T Consensus 73 ~~L~~yDvIIl~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~~GGgll~i 124 (256)
T 2gk3_A 73 DELNRYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVKNGGGLLMI 124 (256)
T ss_dssp HHHHTCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred hHHhcCCEEEEeCCchhhcccccccccccccChHHHHHHHHHHHhCCEEEEE
Confidence 47889999999984321 01135678899999999999999
No 81
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=70.16 E-value=9.7 Score=29.89 Aligned_cols=55 Identities=11% Similarity=0.105 Sum_probs=35.6
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhc-CCCEEEECC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFC-KVDGIIVPG 118 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~-~~dglilpG 118 (326)
+||.|+ |++..||-..+.+.|.......+.++++..+.... ...+. ++|.|||.-
T Consensus 2 ~ki~I~--y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~----------------~~~l~~~~d~ii~g~ 57 (148)
T 3f6r_A 2 SKVLIV--FGSSTGNTESIAQKLEELIAAGGHEVTLLNAADAS----------------AENLADGYDAVLFGC 57 (148)
T ss_dssp CEEEEE--EECSSSHHHHHHHHHHHHHHTTTCEEEEEETTTBC----------------CTTTTTTCSEEEEEE
T ss_pred CeEEEE--EECCCchHHHHHHHHHHHHHhCCCeEEEEehhhCC----------------HhHhcccCCEEEEEe
Confidence 478877 67778998899998877655444445544333211 12466 889988754
No 82
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=70.03 E-value=5.4 Score=32.39 Aligned_cols=60 Identities=10% Similarity=0.153 Sum_probs=38.4
Q ss_pred ceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecc-cccCCCCCCCchhhcchhhhhcCCCEEEECC
Q psy17159 45 TVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSE-LLSMDPKTGNMAEYHKTWSDFCKVDGIIVPG 118 (326)
Q Consensus 45 ~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~-~l~~~~~~~~~~~~~~~~~~l~~~dglilpG 118 (326)
..+|.|+ |++..||-..+.+++.......+.++.+..+... . + .+....+.++|+|||.-
T Consensus 4 ~~kv~Iv--Y~S~~GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~---------~---~~~~~~~~~~d~ii~Gs 64 (159)
T 3fni_A 4 ETSIGVF--YVSEYGYSDRLAQAIINGITKTGVGVDVVDLGAAVD---------L---QELRELVGRCTGLVIGM 64 (159)
T ss_dssp CCEEEEE--ECTTSTTHHHHHHHHHHHHHHTTCEEEEEESSSCCC---------H---HHHHHHHHTEEEEEEEC
T ss_pred CCEEEEE--EECCChHHHHHHHHHHHHHHHCCCeEEEEECcCcCC---------H---HHHHHHHHhCCEEEEEc
Confidence 3578888 7777899999988887765555555555444321 1 1 11233566899998864
No 83
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=69.65 E-value=28 Score=30.00 Aligned_cols=92 Identities=11% Similarity=0.087 Sum_probs=50.5
Q ss_pred CCceEEEEEcccCC-CchhHHHHHHHHHHHhhhc-CCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECC
Q psy17159 43 NKTVTIGLVGKYTK-FEDCYASLTRALEHASYHS-NRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPG 118 (326)
Q Consensus 43 ~~~~~I~iigdyg~-~~~~~~Si~~aL~~~g~~~-~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpG 118 (326)
+++.+||++ --.. ...-+..+.+.++++..+. +..+.+.+..... .++....+..+.+ ..+||||+.+
T Consensus 6 ~~~~~Igvi-~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~-------~~~~~~~~~i~~l~~~~vdgiii~~ 77 (304)
T 3gbv_A 6 NKKYTFACL-LPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDP-------YDYNSFVATSQAVIEEQPDGVMFAP 77 (304)
T ss_dssp -CCEEEEEE-EECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECS-------SCHHHHHHHHHHHHTTCCSEEEECC
T ss_pred CCcceEEEE-ecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCC-------CCHHHHHHHHHHHHhcCCCEEEECC
Confidence 345688877 2111 1134667888888877766 5666666553211 0111111112223 4799999987
Q ss_pred CCCCCCCchHHHHHHHHHHcCCCEEEEe
Q psy17159 119 GFGKRGLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 119 G~~~~~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
... ......++.+.+.++|+.-+.
T Consensus 78 ~~~----~~~~~~~~~~~~~~iPvV~~~ 101 (304)
T 3gbv_A 78 TVP----QYTKGFTDALNELGIPYIYID 101 (304)
T ss_dssp SSG----GGTHHHHHHHHHHTCCEEEES
T ss_pred CCh----HHHHHHHHHHHHCCCeEEEEe
Confidence 421 122345666667789987664
No 84
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=69.48 E-value=27 Score=30.01 Aligned_cols=88 Identities=15% Similarity=0.090 Sum_probs=47.9
Q ss_pred CceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCC
Q psy17159 44 KTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFG 121 (326)
Q Consensus 44 ~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~ 121 (326)
++.+||++ --.....-+..+...++.+..+.+..+.+...+. ++..-.+..+.+ ..+||||+.+...
T Consensus 7 ~~~~Ig~i-~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~----------~~~~~~~~~~~l~~~~vdgiI~~~~~~ 75 (293)
T 3l6u_A 7 KRNIVGFT-IVNDKHEFAQRLINAFKAEAKANKYEALVATSQN----------SRISEREQILEFVHLKVDAIFITTLDD 75 (293)
T ss_dssp --CEEEEE-ESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECSS----------CHHHHHHHHHHHHHTTCSEEEEECSCT
T ss_pred CCcEEEEE-EecCCcHHHHHHHHHHHHHHHHcCCEEEEECCCC----------CHHHHHHHHHHHHHcCCCEEEEecCCh
Confidence 44678888 2222113466688888888777666555443321 111100111222 4799999976432
Q ss_pred CCCCchHHHHHHHHHHcCCCEEEEe
Q psy17159 122 KRGLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 122 ~~~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
. .....++.+.+.++|+.-+.
T Consensus 76 ~----~~~~~~~~~~~~~iPvV~~~ 96 (293)
T 3l6u_A 76 V----YIGSAIEEAKKAGIPVFAID 96 (293)
T ss_dssp T----TTHHHHHHHHHTTCCEEEES
T ss_pred H----HHHHHHHHHHHcCCCEEEec
Confidence 1 22245666667899987764
No 85
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=69.45 E-value=18 Score=27.64 Aligned_cols=53 Identities=17% Similarity=0.208 Sum_probs=33.0
Q ss_pred EEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECC
Q psy17159 48 IGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPG 118 (326)
Q Consensus 48 I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpG 118 (326)
|.|+ |++..||-..+.+.+.......+.++++..+.. . + .+.+.++|+|||..
T Consensus 2 i~ii--y~S~tGnT~~~a~~i~~~l~~~g~~v~~~~~~~--~-------~-------~~~l~~~d~vi~g~ 54 (137)
T 2fz5_A 2 VEIV--YWSGTGNTEAMANEIEAAVKAAGADVESVRFED--T-------N-------VDDVASKDVILLGC 54 (137)
T ss_dssp EEEE--ECCSSSHHHHHHHHHHHHHHHTTCCEEEEETTS--C-------C-------HHHHHTCSEEEEEC
T ss_pred EEEE--EECCCChHHHHHHHHHHHHHhCCCeEEEEEccc--C-------C-------HHHHhcCCEEEEEc
Confidence 4555 667789988888888765544344455443321 0 1 23578899998864
No 86
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=69.44 E-value=24 Score=30.72 Aligned_cols=88 Identities=11% Similarity=0.041 Sum_probs=47.3
Q ss_pred ceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCC
Q psy17159 45 TVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGK 122 (326)
Q Consensus 45 ~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~ 122 (326)
+.+|++| -...-..-+..+...++++..+.+..+.+...... ++....+..+.+ ..+||||+.+....
T Consensus 4 ~~~I~~i-~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~---------~~~~~~~~i~~l~~~~vdgiIi~~~~~~ 73 (305)
T 3g1w_A 4 NETYMMI-TFQSGMDYWKRCLKGFEDAAQALNVTVEYRGAAQY---------DIQEQITVLEQAIAKNPAGIAISAIDPV 73 (305)
T ss_dssp -CEEEEE-ESSTTSTHHHHHHHHHHHHHHHHTCEEEEEECSSS---------CHHHHHHHHHHHHHHCCSEEEECCSSTT
T ss_pred CceEEEE-EccCCChHHHHHHHHHHHHHHHcCCEEEEeCCCcC---------CHHHHHHHHHHHHHhCCCEEEEcCCCHH
Confidence 4578877 22221234666888888877766655544222111 111111112222 47999999874321
Q ss_pred CCCchHHHHHHHHHHcCCCEEEEe
Q psy17159 123 RGLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 123 ~~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
.....++.+.+.++|+.-+-
T Consensus 74 ----~~~~~~~~~~~~~iPvV~~~ 93 (305)
T 3g1w_A 74 ----ELTDTINKAVDAGIPIVLFD 93 (305)
T ss_dssp ----TTHHHHHHHHHTTCCEEEES
T ss_pred ----HHHHHHHHHHHCCCcEEEEC
Confidence 22345666667899987654
No 87
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=69.41 E-value=13 Score=34.68 Aligned_cols=36 Identities=28% Similarity=0.356 Sum_probs=26.9
Q ss_pred cCCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEehhH
Q psy17159 109 CKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGL 149 (326)
Q Consensus 109 ~~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIClG~ 149 (326)
+.+|.+|.-||-| -++.+.+.+...+.|+|||=+|.
T Consensus 107 ~~~DlvI~lGGDG-----T~L~aa~~~~~~~~PvlGiN~G~ 142 (365)
T 3pfn_A 107 NQIDFIICLGGDG-----TLLYASSLFQGSVPPVMAFHLGS 142 (365)
T ss_dssp TTCSEEEEESSTT-----HHHHHHHHCSSSCCCEEEEESSS
T ss_pred cCCCEEEEEcChH-----HHHHHHHHhccCCCCEEEEcCCC
Confidence 5789999999854 24555665555679999999884
No 88
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=69.25 E-value=24 Score=30.35 Aligned_cols=88 Identities=14% Similarity=-0.052 Sum_probs=48.4
Q ss_pred CceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCC
Q psy17159 44 KTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFG 121 (326)
Q Consensus 44 ~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~ 121 (326)
++.+||++ --.....-+..+...++.+..+.+..+.+..... ++....+..+.+ ..+||||+.+...
T Consensus 4 ~~~~Ig~i-~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~----------~~~~~~~~~~~l~~~~vdgiIi~~~~~ 72 (291)
T 3l49_A 4 EGKTIGIT-AIGTDHDWDLKAYQAQIAEIERLGGTAIALDAGR----------NDQTQVSQIQTLIAQKPDAIIEQLGNL 72 (291)
T ss_dssp TTCEEEEE-ESCCSSHHHHHHHHHHHHHHHHTTCEEEEEECTT----------CHHHHHHHHHHHHHHCCSEEEEESSCH
T ss_pred CCcEEEEE-eCCCCChHHHHHHHHHHHHHHHcCCEEEEEcCCC----------CHHHHHHHHHHHHHcCCCEEEEeCCCh
Confidence 34678888 2221112345678888888777665554443221 111111112222 4799999986421
Q ss_pred CCCCchHHHHHHHHHHcCCCEEEEe
Q psy17159 122 KRGLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 122 ~~~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
......++.+.+.++|+.-+-
T Consensus 73 ----~~~~~~~~~~~~~~iPvV~~~ 93 (291)
T 3l49_A 73 ----DVLNPWLQKINDAGIPLFTVD 93 (291)
T ss_dssp ----HHHHHHHHHHHHTTCCEEEES
T ss_pred ----hhhHHHHHHHHHCCCcEEEec
Confidence 133456677777899987653
No 89
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=68.63 E-value=15 Score=28.32 Aligned_cols=49 Identities=8% Similarity=0.041 Sum_probs=32.8
Q ss_pred cCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECC
Q psy17159 54 YTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPG 118 (326)
Q Consensus 54 yg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpG 118 (326)
|++..||-..+.++|.+.....+.++++..+.... .+.+.++|.|||..
T Consensus 5 Y~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~----------------~~~l~~~d~iiig~ 53 (138)
T 5nul_A 5 YWSGTGNTEKMAELIAKGIIESGKDVNTINVSDVN----------------IDELLNEDILILGC 53 (138)
T ss_dssp EECSSSHHHHHHHHHHHHHHHTTCCCEEEEGGGCC----------------HHHHTTCSEEEEEE
T ss_pred EECCCchHHHHHHHHHHHHHHCCCeEEEEEhhhCC----------------HHHHhhCCEEEEEc
Confidence 66777898888888877665555556655444211 23678899998864
No 90
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=65.55 E-value=3.2 Score=34.71 Aligned_cols=29 Identities=24% Similarity=0.265 Sum_probs=18.1
Q ss_pred hhcC--CCEEEECCCCCCCCCchHHHHHHHH
Q psy17159 107 DFCK--VDGIIVPGGFGKRGLEGKIAACKWA 135 (326)
Q Consensus 107 ~l~~--~dglilpGG~~~~~~~~~~~~i~~~ 135 (326)
.+++ +|.||.+||-|.....-..+++..+
T Consensus 76 a~~~~~~DlVittGG~s~g~~D~t~eal~~~ 106 (178)
T 2pjk_A 76 ALSIDEVDVIISTGGTGYSPTDITVETIRKL 106 (178)
T ss_dssp HHTCTTCCEEEEESCCSSSTTCCHHHHHGGG
T ss_pred HHhcCCCCEEEECCCCCCCCCcchHHHHHHH
Confidence 3445 8999999986654433344555443
No 91
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=64.47 E-value=13 Score=28.93 Aligned_cols=55 Identities=7% Similarity=-0.013 Sum_probs=34.1
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcC-CCEEEECC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCK-VDGIIVPG 118 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~-~dglilpG 118 (326)
|||.|+ |++..||-..+.+.|.......+.++++..+.... ...+.+ +|.|||.-
T Consensus 1 mki~ii--y~S~~Gnt~~~a~~i~~~l~~~g~~v~~~~~~~~~----------------~~~l~~~~d~ii~~~ 56 (147)
T 1f4p_A 1 PKALIV--YGSTTGNTEYTAETIARELADAGYEVDSRDAASVE----------------AGGLFEGFDLVLLGC 56 (147)
T ss_dssp CEEEEE--EECSSSHHHHHHHHHHHHHHHHTCEEEEEEGGGCC----------------STTTTTTCSEEEEEE
T ss_pred CeEEEE--EECCcCHHHHHHHHHHHHHHhcCCeeEEEehhhCC----------------HHHhcCcCCEEEEEe
Confidence 477777 67777888888888776544334445544433211 124667 99998753
No 92
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=64.29 E-value=27 Score=29.61 Aligned_cols=88 Identities=16% Similarity=0.115 Sum_probs=46.1
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cC-CCEEEECCCCCC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CK-VDGIIVPGGFGK 122 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~-~dglilpGG~~~ 122 (326)
++||++-. ..-..-+..+.+.++.+..+.+..+.+...+.. .++.+-.+..+.+ .. +||||+.+....
T Consensus 1 ~~Ig~i~~-~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~--------~~~~~~~~~i~~l~~~~~vdgii~~~~~~~ 71 (276)
T 3ksm_A 1 PKLLLVLK-GDSNAYWRQVYLGAQKAADEAGVTLLHRSTKDD--------GDIAGQIQILSYHLSQAPPDALILAPNSAE 71 (276)
T ss_dssp CEEEEECS-CSSSTHHHHHHHHHHHHHHHHTCEEEECCCSST--------TCHHHHHHHHHHHHHHSCCSEEEECCSSTT
T ss_pred CeEEEEeC-CCCChHHHHHHHHHHHHHHHcCCEEEEECCCCC--------CCHHHHHHHHHHHHHhCCCCEEEEeCCCHH
Confidence 36888822 111134666788888777766655444332211 1111111111222 36 999999874211
Q ss_pred CCCchHHHHHHHHHHcCCCEEEEe
Q psy17159 123 RGLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 123 ~~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
.....++.+.+.++|+.-+.
T Consensus 72 ----~~~~~~~~~~~~~ipvV~~~ 91 (276)
T 3ksm_A 72 ----DLTPSVAQYRARNIPVLVVD 91 (276)
T ss_dssp ----TTHHHHHHHHHTTCCEEEES
T ss_pred ----HHHHHHHHHHHCCCcEEEEe
Confidence 12345666667799987663
No 93
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=63.76 E-value=43 Score=28.58 Aligned_cols=86 Identities=8% Similarity=-0.003 Sum_probs=49.0
Q ss_pred CceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCC
Q psy17159 44 KTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFG 121 (326)
Q Consensus 44 ~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~ 121 (326)
++.+||++ --.....-+..+...++....+.+..+.+...+.. +..-.+..+.+ ..+||||+.+...
T Consensus 6 ~s~~Igvi-~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~----------~~~~~~~~~~l~~~~vdgiIi~~~~~ 74 (276)
T 3jy6_A 6 SSKLIAVI-VANIDDYFSTELFKGISSILESRGYIGVLFDANAD----------IEREKTLLRAIGSRGFDGLILQSFSN 74 (276)
T ss_dssp CCCEEEEE-ESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECTTC----------HHHHHHHHHHHHTTTCSEEEEESSCC
T ss_pred CCcEEEEE-eCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCC----------HHHHHHHHHHHHhCCCCEEEEecCCc
Confidence 44678888 22211134667888888888777666555443311 11000112223 4799999987532
Q ss_pred CCCCchHHHHHHHHHHcCCCEEEEeh
Q psy17159 122 KRGLEGKIAACKWARENNKPFLGICL 147 (326)
Q Consensus 122 ~~~~~~~~~~i~~~~~~~~PvLGICl 147 (326)
...++.+.+.++|+.-+..
T Consensus 75 -------~~~~~~l~~~~iPvV~i~~ 93 (276)
T 3jy6_A 75 -------PQTVQEILHQQMPVVSVDR 93 (276)
T ss_dssp -------HHHHHHHHTTSSCEEEESC
T ss_pred -------HHHHHHHHHCCCCEEEEec
Confidence 3455666667899876653
No 94
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=62.92 E-value=36 Score=29.49 Aligned_cols=89 Identities=12% Similarity=0.052 Sum_probs=48.0
Q ss_pred ceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCC
Q psy17159 45 TVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGK 122 (326)
Q Consensus 45 ~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~ 122 (326)
+.+|+++ --.....-+..+.+.++.+..+.+..+.+ ..+... .++.+-.+..+.+ ..+||||+.+...
T Consensus 3 ~~~Igvi-~~~~~~~~~~~~~~gi~~~a~~~g~~~~~--~~~~~~------~~~~~~~~~i~~l~~~~vdgiii~~~~~- 72 (297)
T 3rot_A 3 RDKYYLI-THGSQDPYWTSLFQGAKKAAEELKVDLQI--LAPPGA------NDVPKQVQFIESALATYPSGIATTIPSD- 72 (297)
T ss_dssp CCEEEEE-CSCCCSHHHHHHHHHHHHHHHHHTCEEEE--ECCSSS------CCHHHHHHHHHHHHHTCCSEEEECCCCS-
T ss_pred eEEEEEE-ecCCCCchHHHHHHHHHHHHHHhCcEEEE--ECCCCc------CCHHHHHHHHHHHHHcCCCEEEEeCCCH-
Confidence 3689998 32221234666888888877766654443 332110 0111111122222 4799999976422
Q ss_pred CCCchHHHHHHHHHHcCCCEEEEe
Q psy17159 123 RGLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 123 ~~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
......++.+.+.++|+.-+-
T Consensus 73 ---~~~~~~~~~~~~~giPvV~~~ 93 (297)
T 3rot_A 73 ---TAFSKSLQRANKLNIPVIAVD 93 (297)
T ss_dssp ---STTHHHHHHHHHHTCCEEEES
T ss_pred ---HHHHHHHHHHHHCCCCEEEEc
Confidence 122345666667799987664
No 95
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=61.67 E-value=11 Score=30.96 Aligned_cols=56 Identities=16% Similarity=0.195 Sum_probs=35.2
Q ss_pred ceEEEEEcccCCCchhHHHHHHHHHHHhhh-cCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECC
Q psy17159 45 TVTIGLVGKYTKFEDCYASLTRALEHASYH-SNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPG 118 (326)
Q Consensus 45 ~~~I~iigdyg~~~~~~~Si~~aL~~~g~~-~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpG 118 (326)
++||.|| |++..||-..+.+++...... .+.++++..+.. . ..+.+.++|+|||.-
T Consensus 4 M~kilii--y~S~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~--~--------------~~~~l~~aD~ii~gs 60 (188)
T 2ark_A 4 MGKVLVI--YDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDE--A--------------TKEDVLWADGLAVGS 60 (188)
T ss_dssp CEEEEEE--ECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTT--C--------------CHHHHHHCSEEEEEE
T ss_pred CCEEEEE--EECCCcHHHHHHHHHHHHHhhcCCCeEEEEEhhh--C--------------CHHHHHhCCEEEEEe
Confidence 4689888 566678877888887765543 343444443321 1 023677899999854
No 96
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=61.24 E-value=17 Score=30.27 Aligned_cols=40 Identities=10% Similarity=0.136 Sum_probs=26.1
Q ss_pred CceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEee
Q psy17159 44 KTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFD 85 (326)
Q Consensus 44 ~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~ 85 (326)
.++||+|| |++..||-..+.+++.....+.+.+|+++.+.
T Consensus 5 ~mmkilii--~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~ 44 (211)
T 1ydg_A 5 APVKLAIV--FYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVR 44 (211)
T ss_dssp CCCEEEEE--ECCSSSHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCCeEEEE--EECCCChHHHHHHHHHHHHhcCCCEEEEEecc
Confidence 34789999 44557787778877776654445556655554
No 97
>2r47_A Uncharacterized protein MTH_862; unknown function, structural genomics, APC5901, PSI-2; 1.88A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=61.16 E-value=1.7 Score=35.72 Aligned_cols=99 Identities=17% Similarity=0.202 Sum_probs=53.1
Q ss_pred ceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCC---CCCCchhhcchhhhhcCCCEEEECCCCC
Q psy17159 45 TVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDP---KTGNMAEYHKTWSDFCKVDGIIVPGGFG 121 (326)
Q Consensus 45 ~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~---~~~~~~~~~~~~~~l~~~dglilpGG~~ 121 (326)
.-+|+.+|-=| -=..++.-+.-+-. +.+.++++..++++.. .++.--.+.+.. . .++|.|||-||-.
T Consensus 26 ~~kIvf~Gs~G----vCtPFaeL~~YaiR----~~~~~FiP~~d~e~a~~l~~~~~G~~~~~~~-~-~~~D~vVllGGLA 95 (157)
T 2r47_A 26 AERIGFAGVPG----VCTPFAQLFAYAVR----DKDNIFIPNTDFSKARKLEVTEYGVELGEIS-P-GNVDVLVLLGGLS 95 (157)
T ss_dssp CSEEEEEECTT----TTHHHHHHHHHHTT----TSEEEEEETTCGGGCEEEEEETTEEEEEEEC-C-CCEEEEEEEGGGG
T ss_pred CCeEEEECCCe----eecCHHhhheeeee----CCceEEcCCCChhHceEEEEecCceEecccc-C-CCCCEEEEecccc
Confidence 45888886543 23344433322221 2467777766655321 111100111111 1 5889999999966
Q ss_pred CCCC----chHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q psy17159 122 KRGL----EGKIAACKWARENNKPFLGICLGLQAAVIE 155 (326)
Q Consensus 122 ~~~~----~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 155 (326)
.|.. +..-++|....+.+..+.||| +|-|...
T Consensus 96 MPk~~v~~e~v~~li~ki~~~~~kiiGvC--Fms~F~k 131 (157)
T 2r47_A 96 MPGIGSDIEDVKKLVEDALEEGGELMGLC--YMDMFAR 131 (157)
T ss_dssp STTTSCCHHHHHHHHHHHEEEEEEEEEEE--ETTHHHH
T ss_pred CCCCCCCHHHHHHHHHHhhcCCCCEEEEE--hHHHHHH
Confidence 5532 345556666655567899999 4444443
No 98
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=60.99 E-value=28 Score=32.20 Aligned_cols=60 Identities=10% Similarity=0.022 Sum_probs=37.5
Q ss_pred ceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECC
Q psy17159 45 TVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPG 118 (326)
Q Consensus 45 ~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpG 118 (326)
++||.|+ |++..||-..+.+++.......+.++++..+....+ .+..+.+.++|+|||..
T Consensus 256 ~~kv~ii--y~S~~GnT~~la~~i~~~l~~~g~~v~~~~l~~~~~------------~~~~~~l~~~D~iiigs 315 (414)
T 2q9u_A 256 QKKVTVV--LDSMYGTTHRMALALLDGARSTGCETVLLEMTSSDI------------TKVALHTYDSGAVAFAS 315 (414)
T ss_dssp CSEEEEE--ECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGCCH------------HHHHHHHHTCSEEEEEC
T ss_pred CCeEEEE--EECCCchHHHHHHHHHHHHHhCCCeEEEEEcCcCCH------------HHHHHHHHhCCEEEEEc
Confidence 4688888 566678888888887766544444454444332110 01234678999999875
No 99
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=60.60 E-value=43 Score=28.62 Aligned_cols=82 Identities=12% Similarity=0.008 Sum_probs=44.7
Q ss_pred CCceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCC
Q psy17159 43 NKTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGK 122 (326)
Q Consensus 43 ~~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~ 122 (326)
+++.+||++ --.....-+..+...++....+.+..+.+...+.. .+. ...+ .+||||+.+....
T Consensus 6 ~~~~~Igvi-~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-~~~-------------~~~~-~vdgiI~~~~~~~ 69 (277)
T 3cs3_A 6 RQTNIIGVY-LADYGGSFYGELLEGIKKGLALFDYEMIVCSGKKS-HLF-------------IPEK-MVDGAIILDWTFP 69 (277)
T ss_dssp CCCCEEEEE-ECSSCTTTHHHHHHHHHHHHHTTTCEEEEEESTTT-TTC-------------CCTT-TCSEEEEECTTSC
T ss_pred cCCcEEEEE-ecCCCChhHHHHHHHHHHHHHHCCCeEEEEeCCCC-HHH-------------Hhhc-cccEEEEecCCCC
Confidence 345678888 21111134667888888877766655544332211 000 0122 8999999874221
Q ss_pred CCCchHHHHHHHHHHcCCCEEEEe
Q psy17159 123 RGLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 123 ~~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
. ..++.+.+.++|+.-+.
T Consensus 70 ---~---~~~~~l~~~~iPvV~~~ 87 (277)
T 3cs3_A 70 ---T---KEIEKFAERGHSIVVLD 87 (277)
T ss_dssp ---H---HHHHHHHHTTCEEEESS
T ss_pred ---H---HHHHHHHhcCCCEEEEe
Confidence 1 34455556788876553
No 100
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=60.46 E-value=12 Score=33.17 Aligned_cols=36 Identities=28% Similarity=0.363 Sum_probs=25.4
Q ss_pred cCCCEEEECCCCCCCCCchHHHHHHHHHHc--CCCEEEEehhH
Q psy17159 109 CKVDGIIVPGGFGKRGLEGKIAACKWAREN--NKPFLGICLGL 149 (326)
Q Consensus 109 ~~~dglilpGG~~~~~~~~~~~~i~~~~~~--~~PvLGIClG~ 149 (326)
..+|.||.-||-| -+..+++.+... ++|+|||=.|.
T Consensus 34 ~~~D~vv~lGGDG-----T~l~aa~~~~~~~~~~PilGIn~G~ 71 (272)
T 2i2c_A 34 VEPEIVISIGGDG-----TFLSAFHQYEERLDEIAFIGIHTGH 71 (272)
T ss_dssp SSCSEEEEEESHH-----HHHHHHHHTGGGTTTCEEEEEESSS
T ss_pred CCCCEEEEEcCcH-----HHHHHHHHHhhcCCCCCEEEEeCCC
Confidence 3679999999843 234555655554 89999998774
No 101
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=60.33 E-value=49 Score=25.02 Aligned_cols=79 Identities=10% Similarity=0.008 Sum_probs=47.0
Q ss_pred CceEEEEEcccCCCchhHHH-HHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCC
Q psy17159 44 KTVTIGLVGKYTKFEDCYAS-LTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGK 122 (326)
Q Consensus 44 ~~~~I~iigdyg~~~~~~~S-i~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~ 122 (326)
+.+||.++ +-.|.-.| +.+.++.+....+.++++.-....+ ..+.++++|.|++++-
T Consensus 5 ~~mkIlL~----C~aGmSTsllv~km~~~a~~~gi~v~i~a~~~~~---------------~~~~~~~~DvvLLgPQ--- 62 (108)
T 3nbm_A 5 KELKVLVL----CAGSGTSAQLANAINEGANLTEVRVIANSGAYGA---------------HYDIMGVYDLIILAPQ--- 62 (108)
T ss_dssp CCEEEEEE----ESSSSHHHHHHHHHHHHHHHHTCSEEEEEEETTS---------------CTTTGGGCSEEEECGG---
T ss_pred cCceEEEE----CCCCCCHHHHHHHHHHHHHHCCCceEEEEcchHH---------------HHhhccCCCEEEEChH---
Confidence 45889888 22243333 6677777776666666654433222 1235678999999753
Q ss_pred CCCchHHHHHHHHHH-cCCCEEEEe
Q psy17159 123 RGLEGKIAACKWARE-NNKPFLGIC 146 (326)
Q Consensus 123 ~~~~~~~~~i~~~~~-~~~PvLGIC 146 (326)
.....+-++...+ .++||.-|-
T Consensus 63 --V~y~~~~ik~~~~~~~ipV~vI~ 85 (108)
T 3nbm_A 63 --VRSYYREMKVDAERLGIQIVATR 85 (108)
T ss_dssp --GGGGHHHHHHHHTTTTCEEEECC
T ss_pred --HHHHHHHHHHHhhhcCCcEEEeC
Confidence 2334455555443 479988765
No 102
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=60.00 E-value=7 Score=32.35 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=15.5
Q ss_pred CCCEEEECCCCCCCCCchHHHHHHH
Q psy17159 110 KVDGIIVPGGFGKRGLEGKIAACKW 134 (326)
Q Consensus 110 ~~dglilpGG~~~~~~~~~~~~i~~ 134 (326)
.+|-||.+||-|.....-..+++..
T Consensus 69 ~~DlVittGG~g~~~~D~t~ea~~~ 93 (172)
T 1mkz_A 69 DVQVVLITGGTGLTEGDQAPEALLP 93 (172)
T ss_dssp SCCEEEEESCCSSSTTCCHHHHHGG
T ss_pred CCCEEEeCCCCCCCCCCCHHHHHHH
Confidence 3999999998665433333344443
No 103
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=58.73 E-value=29 Score=30.40 Aligned_cols=85 Identities=12% Similarity=0.042 Sum_probs=45.7
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKR 123 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~ 123 (326)
.+||++ --.....-+.++.+.++.+..+.+..+.+..... ++..-.+..+.+ ..+||||+.+....
T Consensus 3 ~~Igvi-~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~----------~~~~~~~~i~~l~~~~vdgiIi~~~~~~- 70 (313)
T 3m9w_A 3 VKIGMA-IDDLRLERWQKDRDIFVKKAESLGAKVFVQSANG----------NEETQMSQIENMINRGVDVLVIIPYNGQ- 70 (313)
T ss_dssp CEEEEE-ESCCSSSTTHHHHHHHHHHHHHTSCEEEEEECTT----------CHHHHHHHHHHHHHTTCSEEEEECSSTT-
T ss_pred cEEEEE-eCCCCChHHHHHHHHHHHHHHHcCCEEEEECCCC----------CHHHHHHHHHHHHHcCCCEEEEeCCChh-
Confidence 468877 2111113466678888877776665554433221 111111112222 47999999875321
Q ss_pred CCchHHHHHHHHHHcCCCEEEE
Q psy17159 124 GLEGKIAACKWARENNKPFLGI 145 (326)
Q Consensus 124 ~~~~~~~~i~~~~~~~~PvLGI 145 (326)
.....++.+.+.++|+.-+
T Consensus 71 ---~~~~~~~~~~~~~iPvV~~ 89 (313)
T 3m9w_A 71 ---VLSNVVKEAKQEGIKVLAY 89 (313)
T ss_dssp ---SCHHHHHHHHTTTCEEEEE
T ss_pred ---hhHHHHHHHHHCCCeEEEE
Confidence 1234566666778898655
No 104
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=58.57 E-value=31 Score=30.26 Aligned_cols=43 Identities=7% Similarity=-0.016 Sum_probs=30.0
Q ss_pred hhhcCCCEEEECCC-CCCCCCchHHHHHHHHHHcCCCEEEEehh
Q psy17159 106 SDFCKVDGIIVPGG-FGKRGLEGKIAACKWARENNKPFLGICLG 148 (326)
Q Consensus 106 ~~l~~~dglilpGG-~~~~~~~~~~~~i~~~~~~~~PvLGIClG 148 (326)
+.|+++|.||+-|. .+..-.....+.++.+++.|.+++||=.|
T Consensus 63 ~~L~~~DvvV~~~~~~~~~l~~~~~~al~~~V~~GgG~vgiH~a 106 (252)
T 1t0b_A 63 EVLDRCDVLVWWGHIAHDEVKDEVVERVHRRVLEGMGLIVLHSG 106 (252)
T ss_dssp HHHHTCSEEEEECSSCGGGSCHHHHHHHHHHHHTTCEEEEEGGG
T ss_pred hHHhcCCEEEEecCCCCCcCCHHHHHHHHHHHHcCCCEEEEccc
Confidence 46899999998431 11111234567788888999999999655
No 105
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=58.47 E-value=47 Score=28.46 Aligned_cols=85 Identities=18% Similarity=0.206 Sum_probs=46.0
Q ss_pred CceEEEEEcccC-----CCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEE
Q psy17159 44 KTVTIGLVGKYT-----KFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIV 116 (326)
Q Consensus 44 ~~~~I~iigdyg-----~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglil 116 (326)
++.+||++ --. ....-+..+.+.++.+..+.+..+.+...+. ++..-.+..+.+ ..+||||+
T Consensus 7 ~~~~Igvi-~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~----------~~~~~~~~~~~~~~~~vdgiIi 75 (292)
T 3k4h_A 7 TTKTLGLV-MPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMSTGET----------EEEIFNGVVKMVQGRQIGGIIL 75 (292)
T ss_dssp CCCEEEEE-CSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEECCCCS----------HHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCCEEEEE-ecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEEeCCC----------CHHHHHHHHHHHHcCCCCEEEE
Confidence 45679988 222 1113466688888887776665544332221 111101112223 47999999
Q ss_pred CCCCCCCCCchHHHHHHHHHHcCCCEEEE
Q psy17159 117 PGGFGKRGLEGKIAACKWARENNKPFLGI 145 (326)
Q Consensus 117 pGG~~~~~~~~~~~~i~~~~~~~~PvLGI 145 (326)
.+.... . ..++.+.+.++|+.-+
T Consensus 76 ~~~~~~---~---~~~~~l~~~~iPvV~~ 98 (292)
T 3k4h_A 76 LYSREN---D---RIIQYLHEQNFPFVLI 98 (292)
T ss_dssp SCCBTT---C---HHHHHHHHTTCCEEEE
T ss_pred eCCCCC---h---HHHHHHHHCCCCEEEE
Confidence 875321 1 3455555678898755
No 106
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=58.27 E-value=81 Score=26.47 Aligned_cols=85 Identities=15% Similarity=0.225 Sum_probs=45.5
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKR 123 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~ 123 (326)
.+||++ --.....-+..+.+.++.+..+.+..+.+...+. ++..-.+..+.+ ..+||||+.+.....
T Consensus 3 ~~Igvi-~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~----------~~~~~~~~~~~l~~~~vdgiIi~~~~~~~ 71 (272)
T 3o74_A 3 RTLGFI-LPDLENPSYARIAKQLEQGARARGYQLLIASSDD----------QPDSERQLQQLFRARRCDALFVASCLPPE 71 (272)
T ss_dssp CEEEEE-ESCTTCHHHHHHHHHHHHHHHHTTCEEEEEECTT----------CHHHHHHHHHHHHHTTCSEEEECCCCCSS
T ss_pred eEEEEE-eCCCcChhHHHHHHHHHHHHHHCCCEEEEEeCCC----------CHHHHHHHHHHHHHcCCCEEEEecCcccc
Confidence 467777 2221113466688888888777666555543321 111111112222 479999998753211
Q ss_pred CCchHHHHHHHHHHcCCCEEEEe
Q psy17159 124 GLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 124 ~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
.. .++.+.+.++|+.-+.
T Consensus 72 --~~---~~~~~~~~~iPvV~~~ 89 (272)
T 3o74_A 72 --DD---SYRELQDKGLPVIAID 89 (272)
T ss_dssp --CC---HHHHHHHTTCCEEEES
T ss_pred --HH---HHHHHHHcCCCEEEEc
Confidence 12 3344556788987654
No 107
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=58.26 E-value=59 Score=28.07 Aligned_cols=85 Identities=15% Similarity=0.117 Sum_probs=49.0
Q ss_pred CceEEEEEc-----ccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEE
Q psy17159 44 KTVTIGLVG-----KYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIV 116 (326)
Q Consensus 44 ~~~~I~iig-----dyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglil 116 (326)
++.+||++= +... .-+..+...++....+.+..+.+...+. .. ... +..+.+ ..+||||+
T Consensus 5 ~s~~Igvi~~~~~~~~~~--~~~~~~~~gi~~~a~~~g~~~~~~~~~~---~~-----~~~---~~~~~l~~~~vdGiIi 71 (294)
T 3qk7_A 5 RTDAIALAYPSRPRVLNN--STFLEMISWIGIELGKRGLDLLLIPDEP---GE-----KYQ---SLIHLVETRRVDALIV 71 (294)
T ss_dssp CCCEEEEEEESCSGGGSC--HHHHHHHHHHHHHHHHTTCEEEEEEECT---TC-----CCH---HHHHHHHHTCCSEEEE
T ss_pred ccceEEEEecCCCccccC--hhHHHHHHHHHHHHHHCCCEEEEEeCCC---hh-----hHH---HHHHHHHcCCCCEEEE
Confidence 445788872 2221 3466788888888877776666655442 10 000 122233 37999999
Q ss_pred CCCCCCCCCchHHHHHHHHHHcCCCEEEEeh
Q psy17159 117 PGGFGKRGLEGKIAACKWARENNKPFLGICL 147 (326)
Q Consensus 117 pGG~~~~~~~~~~~~i~~~~~~~~PvLGICl 147 (326)
.+..... ..++.+.+.++|+.-+..
T Consensus 72 ~~~~~~~------~~~~~l~~~~iPvV~~~~ 96 (294)
T 3qk7_A 72 AHTQPED------FRLQYLQKQNFPFLALGR 96 (294)
T ss_dssp CSCCSSC------HHHHHHHHTTCCEEEESC
T ss_pred eCCCCCh------HHHHHHHhCCCCEEEECC
Confidence 8753211 345555567888876543
No 108
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=57.96 E-value=52 Score=28.82 Aligned_cols=87 Identities=13% Similarity=0.098 Sum_probs=48.3
Q ss_pred ceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCC
Q psy17159 45 TVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGK 122 (326)
Q Consensus 45 ~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~ 122 (326)
+.+||++ --.....-+..+.+.++.+..+.+..+.+...+. ++..-.+..+.+ ..+||||+.+...
T Consensus 3 ~~~Igvi-~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~----------~~~~~~~~i~~~~~~~vdgiIi~~~~~- 70 (330)
T 3uug_A 3 KGSVGIA-MPTKSSARWIDDGNNIVKQLQEAGYKTDLQYADD----------DIPNQLSQIENMVTKGVKVLVIASIDG- 70 (330)
T ss_dssp CCEEEEE-ECCSSSTHHHHHHHHHHHHHHHTTCEEEEEECTT----------CHHHHHHHHHHHHHHTCSEEEECCSSG-
T ss_pred CcEEEEE-eCCCcchHHHHHHHHHHHHHHHcCCEEEEeeCCC----------CHHHHHHHHHHHHHcCCCEEEEEcCCc-
Confidence 3578887 2211113466788888888877766555444221 111100111122 4799999986421
Q ss_pred CCCchHHHHHHHHHHcCCCEEEEe
Q psy17159 123 RGLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 123 ~~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
......++.+.+.++|+.-+.
T Consensus 71 ---~~~~~~~~~~~~~giPvV~~~ 91 (330)
T 3uug_A 71 ---TTLSDVLKQAGEQGIKVIAYD 91 (330)
T ss_dssp ---GGGHHHHHHHHHTTCEEEEES
T ss_pred ---hhHHHHHHHHHHCCCCEEEEC
Confidence 223455666777889987653
No 109
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=57.78 E-value=18 Score=32.50 Aligned_cols=73 Identities=8% Similarity=-0.060 Sum_probs=34.8
Q ss_pred CCceEEEEEcccCCCc--hhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEEC
Q psy17159 43 NKTVTIGLVGKYTKFE--DCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVP 117 (326)
Q Consensus 43 ~~~~~I~iigdyg~~~--~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilp 117 (326)
..++||++| +|+.. ++-..+.+.+.......+.+++++.+....+........++...++.+.+..+|+|||.
T Consensus 56 ~~~mKILiI--~GS~R~~S~T~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~a 130 (279)
T 2fzv_A 56 APPVRILLL--YGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWC 130 (279)
T ss_dssp CSCCEEEEE--ESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEE
T ss_pred CCCCEEEEE--EeCCCCCCHHHHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEEE
Confidence 456789888 44443 33344555544433333444444333221111100001122334456677899999985
No 110
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=57.56 E-value=55 Score=28.20 Aligned_cols=86 Identities=8% Similarity=-0.001 Sum_probs=47.0
Q ss_pred ceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCC
Q psy17159 45 TVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGK 122 (326)
Q Consensus 45 ~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~ 122 (326)
..+||++ --.....-+..+.+.++++..+.+..+ .+.++.. +....+..+.+ ..+||||+.+...
T Consensus 2 ~~~Ig~i-~~~~~~~~~~~~~~gi~~~a~~~g~~~--~~~~~~~---------~~~~~~~i~~l~~~~vdgiii~~~~~- 68 (306)
T 8abp_A 2 NLKLGFL-VKQPEEPWFQTEWKFADKAGKDLGFEV--IKIAVPD---------GEKTLNAIDSLAASGAKGFVICTPDP- 68 (306)
T ss_dssp CEEEEEE-ESCTTSHHHHHHHHHHHHHHHHHTEEE--EEEECCS---------HHHHHHHHHHHHHTTCCEEEEECSCG-
T ss_pred CeEEEEE-eCCCCchHHHHHHHHHHHHHHHcCCEE--EEeCCCC---------HHHHHHHHHHHHHcCCCEEEEeCCCc-
Confidence 3678888 221111335667788887776665443 3444311 11111112222 4799999987421
Q ss_pred CCCchHHHHHHHHHHcCCCEEEEe
Q psy17159 123 RGLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 123 ~~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
......++.+.+.++|+.-+-
T Consensus 69 ---~~~~~~~~~~~~~~iPvV~~~ 89 (306)
T 8abp_A 69 ---KLGSAIVAKARGYDMKVIAVD 89 (306)
T ss_dssp ---GGHHHHHHHHHHTTCEEEEES
T ss_pred ---hhhHHHHHHHHHCCCcEEEeC
Confidence 233455677777899987553
No 111
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=56.41 E-value=71 Score=27.41 Aligned_cols=87 Identities=13% Similarity=0.067 Sum_probs=45.6
Q ss_pred CceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcc---hhhhh--cCCCEEEECC
Q psy17159 44 KTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHK---TWSDF--CKVDGIIVPG 118 (326)
Q Consensus 44 ~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~---~~~~l--~~~dglilpG 118 (326)
++.+||++ --.....-+.++...++.+..+.+..+.+...+. ++..-.+ ..+.+ ..+||||+.+
T Consensus 7 ~~~~Ig~i-~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~----------~~~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (290)
T 2rgy_A 7 QLGIIGLF-VPTFFGSYYGTILKQTDLELRAVHRHVVVATGCG----------ESTPREQALEAVRFLIGRDCDGVVVIS 75 (290)
T ss_dssp -CCEEEEE-CSCSCSHHHHHHHHHHHHHHHHTTCEEEEECCCS----------SSCHHHHHHHHHHHHHHTTCSEEEECC
T ss_pred CCCeEEEE-eCCCCCchHHHHHHHHHHHHHHCCCEEEEEeCCC----------chhhhhhHHHHHHHHHhcCccEEEEec
Confidence 34679988 2211113356678888877766665544432221 1110001 11222 4799999987
Q ss_pred CCCCCCCchHHHHHHHHHHcCCCEEEEeh
Q psy17159 119 GFGKRGLEGKIAACKWARENNKPFLGICL 147 (326)
Q Consensus 119 G~~~~~~~~~~~~i~~~~~~~~PvLGICl 147 (326)
.... . ..++.+.+.++|+.-+..
T Consensus 76 ~~~~---~---~~~~~l~~~~iPvV~~~~ 98 (290)
T 2rgy_A 76 HDLH---D---EDLDELHRMHPKMVFLNR 98 (290)
T ss_dssp SSSC---H---HHHHHHHHHCSSEEEESS
T ss_pred CCCC---H---HHHHHHhhcCCCEEEEcc
Confidence 4321 1 334445557899877653
No 112
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=56.40 E-value=47 Score=28.56 Aligned_cols=86 Identities=10% Similarity=0.108 Sum_probs=44.7
Q ss_pred CceEEEEEcccC-C---CchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEEC
Q psy17159 44 KTVTIGLVGKYT-K---FEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVP 117 (326)
Q Consensus 44 ~~~~I~iigdyg-~---~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilp 117 (326)
++.+||++ --. . ...-+..+...++.+..+.+..+.+ ..... ++..-.+..+.+ ..+||||+.
T Consensus 3 ~s~~Ig~i-~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~--~~~~~--------~~~~~~~~~~~l~~~~vdgiIi~ 71 (287)
T 3bbl_A 3 LSFMIGYS-WTQTEPGQVNHILDQFLSSMVREAGAVNYFVLP--FPFSE--------DRSQIDIYRDLIRSGNVDGFVLS 71 (287)
T ss_dssp CCCEEEEC-CCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEE--CCCCS--------STTCCHHHHHHHHTTCCSEEEEC
T ss_pred ceeEEEEE-ecccccccCChhHHHHHHHHHHHHHHcCCEEEE--EeCCC--------chHHHHHHHHHHHcCCCCEEEEe
Confidence 34578887 211 1 1134667888888777666654443 22111 000000112223 479999998
Q ss_pred CCCCCCCCchHHHHHHHHHHcCCCEEEEe
Q psy17159 118 GGFGKRGLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 118 GG~~~~~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
+.... . ..++.+.+.++|+.-+.
T Consensus 72 ~~~~~---~---~~~~~l~~~~iPvV~~~ 94 (287)
T 3bbl_A 72 SINYN---D---PRVQFLLKQKFPFVAFG 94 (287)
T ss_dssp SCCTT---C---HHHHHHHHTTCCEEEES
T ss_pred ecCCC---c---HHHHHHHhcCCCEEEEC
Confidence 74321 1 23455556789987664
No 113
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=56.03 E-value=28 Score=28.35 Aligned_cols=32 Identities=28% Similarity=0.279 Sum_probs=21.5
Q ss_pred CCCEEEECCCCCCCCCchHHHHHHHHHHcCCC
Q psy17159 110 KVDGIIVPGGFGKRGLEGKIAACKWARENNKP 141 (326)
Q Consensus 110 ~~dglilpGG~~~~~~~~~~~~i~~~~~~~~P 141 (326)
.+|.||.+||-|.....-..+++..+.+...|
T Consensus 71 ~~DlVittGG~g~g~~D~t~~a~~~~~~~~l~ 102 (167)
T 1uuy_A 71 EMDLILTLGGTGFTPRDVTPEATKKVIERETP 102 (167)
T ss_dssp CCSEEEEESCCSSSTTCCHHHHHHHHCSEECH
T ss_pred CCCEEEECCCCCCCCCCchHHHHHHHhcCCCC
Confidence 69999999987655444556677666544343
No 114
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=55.61 E-value=29 Score=30.65 Aligned_cols=33 Identities=18% Similarity=0.234 Sum_probs=25.6
Q ss_pred hcCCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEe
Q psy17159 108 FCKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 108 l~~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
+..+|.||+..- .....+|++|...++|+.|+|
T Consensus 149 f~~PdlliV~Dp------~~e~~AI~EA~~lgIPvIalv 181 (253)
T 3bch_A 149 FREPRLLVVTDP------RADHQPLTEASYVNLPTIALC 181 (253)
T ss_dssp TCSCSEEEESCT------TTTHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCEEEEECC------CccchHHHHHHHhCCCEEEEE
Confidence 467898988742 123468899999999999999
No 115
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=55.52 E-value=16 Score=33.69 Aligned_cols=61 Identities=7% Similarity=0.163 Sum_probs=37.4
Q ss_pred CceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECC
Q psy17159 44 KTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPG 118 (326)
Q Consensus 44 ~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpG 118 (326)
..+||.|+ |++..||-..+.+++.......+.++++..+.... . .+..+.+.++|+|||.-
T Consensus 255 ~~~k~~i~--~~S~~gnT~~la~~i~~~l~~~g~~v~~~~~~~~~---------~---~~~~~~l~~~d~iiigs 315 (404)
T 2ohh_A 255 VDERVTVI--YDTMHGSTRKMAHAIAEGAMSEGVDVRVYCLHEDD---------R---SEIVKDILESGAIALGA 315 (404)
T ss_dssp CCSEEEEE--ECCSSSHHHHHHHHHHHHHHTTTCEEEEEETTTSC---------H---HHHHHHHHTCSEEEEEC
T ss_pred CCCcEEEE--EECCChHHHHHHHHHHHHHHhCCCeEEEEECCCCC---------H---HHHHHHHHHCCEEEEEC
Confidence 34688887 55667888888888876654444444444333111 0 11234678999999875
No 116
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=55.31 E-value=82 Score=26.81 Aligned_cols=89 Identities=19% Similarity=0.195 Sum_probs=48.7
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKR 123 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~ 123 (326)
.+||++ --.....-+..+.+.++....+.+..+.+..... ++..-.+..+.+ ..+||||+.+.....
T Consensus 16 ~~Igvi-~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~----------~~~~~~~~~~~l~~~~vdgiIi~~~~~~~ 84 (298)
T 3tb6_A 16 KTIGVL-TTYISDYIFPSIIRGIESYLSEQGYSMLLTSTNN----------NPDNERRGLENLLSQHIDGLIVEPTKSAL 84 (298)
T ss_dssp CEEEEE-ESCSSSTTHHHHHHHHHHHHHHTTCEEEEEECTT----------CHHHHHHHHHHHHHTCCSEEEECCSSTTS
T ss_pred ceEEEE-eCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCC----------ChHHHHHHHHHHHHCCCCEEEEecccccc
Confidence 578888 2222113467788888888777666555543321 111100111222 479999998753221
Q ss_pred CCchHHHHHHHHHHcCCCEEEEe
Q psy17159 124 GLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 124 ~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
. ......++.+.+.++|+.-+.
T Consensus 85 ~-~~~~~~~~~~~~~~iPvV~~~ 106 (298)
T 3tb6_A 85 Q-TPNIGYYLNLEKNGIPFAMIN 106 (298)
T ss_dssp C-CTTHHHHHHHHHTTCCEEEES
T ss_pred c-CCcHHHHHHHHhcCCCEEEEe
Confidence 1 112345566667799987664
No 117
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=55.27 E-value=27 Score=28.46 Aligned_cols=38 Identities=11% Similarity=0.209 Sum_probs=25.1
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhh-cCCceEEEEee
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYH-SNRHLQLKYFD 85 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~-~~~~v~~~~i~ 85 (326)
+||.|| |++..||-..+.+++...... .+.+++++.+.
T Consensus 2 mkilii--~~S~~g~t~~la~~i~~~l~~~~g~~v~~~~l~ 40 (198)
T 3b6i_A 2 AKVLVL--YYSMYGHIETMARAVAEGASKVDGAEVVVKRVP 40 (198)
T ss_dssp CEEEEE--ECCSSSHHHHHHHHHHHHHHTSTTCEEEEEECC
T ss_pred CeEEEE--EeCCCcHHHHHHHHHHHHHhhcCCCEEEEEEcc
Confidence 578888 445567877788877766544 45566666554
No 118
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=55.23 E-value=15 Score=32.79 Aligned_cols=36 Identities=25% Similarity=0.303 Sum_probs=26.5
Q ss_pred cCCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEehhH
Q psy17159 109 CKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGL 149 (326)
Q Consensus 109 ~~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIClG~ 149 (326)
..+|.||.-||-| -+.++++.+...++|+|||=+|.
T Consensus 62 ~~~D~vi~~GGDG-----T~l~a~~~~~~~~~P~lGI~~Gt 97 (292)
T 2an1_A 62 QQADLAVVVGGDG-----NMLGAARTLARYDINVIGINRGN 97 (292)
T ss_dssp HHCSEEEECSCHH-----HHHHHHHHHTTSSCEEEEBCSSS
T ss_pred cCCCEEEEEcCcH-----HHHHHHHHhhcCCCCEEEEECCC
Confidence 4689999999843 24556666666689999997664
No 119
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=55.12 E-value=5.1 Score=32.98 Aligned_cols=32 Identities=22% Similarity=0.218 Sum_probs=21.2
Q ss_pred CCCEEEECCCCCCCCCchHHHHHHHHHHcCCC
Q psy17159 110 KVDGIIVPGGFGKRGLEGKIAACKWARENNKP 141 (326)
Q Consensus 110 ~~dglilpGG~~~~~~~~~~~~i~~~~~~~~P 141 (326)
.+|.||.+||-|.....-..++++.+.+...|
T Consensus 66 ~~DlVittGG~s~g~~D~t~eal~~~~~~~lp 97 (164)
T 3pzy_A 66 DVDVILTSGGTGIAPTDSTPDQTVAVVDYLIP 97 (164)
T ss_dssp TCSEEEEESCCSSSTTCCHHHHHHTTCSEECH
T ss_pred CCCEEEECCCCCCCCCccHHHHHHHHhcccCc
Confidence 79999999987654444455666655444444
No 120
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=54.51 E-value=21 Score=29.32 Aligned_cols=67 Identities=10% Similarity=0.104 Sum_probs=36.1
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCC-----CCC--CchhhcchhhhhcCCCEEEECC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDP-----KTG--NMAEYHKTWSDFCKVDGIIVPG 118 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~-----~~~--~~~~~~~~~~~l~~~dglilpG 118 (326)
+||.|| |++..||-..+.+++.......+.+++++.+... ..+.. ..+ +|. ...+.+.++|+|||.-
T Consensus 6 ~kilii--~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~-~~~~~~~~~~~~~~~~~~---~~~~~l~~aD~ii~gs 79 (200)
T 2a5l_A 6 PYILVL--YYSRHGATAEMARQIARGVEQGGFEARVRTVPAV-STECEAVAPDIPAEGALY---ATLEDLKNCAGLALGS 79 (200)
T ss_dssp CEEEEE--ECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCCE-EC-------------CCB---CCHHHHHTCSEEEEEE
T ss_pred ceEEEE--EeCCCChHHHHHHHHHHHHhhCCCEEEEEEhhhc-cchhhhhccccccccCch---hhHHHHHHCCEEEEEc
Confidence 588888 5555788777887777655444445555444321 00000 000 000 1234678999999854
No 121
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=54.11 E-value=19 Score=30.87 Aligned_cols=34 Identities=15% Similarity=0.237 Sum_probs=25.8
Q ss_pred hhcCCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEe
Q psy17159 107 DFCKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 107 ~l~~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
.+..+|.||+..- .....++++|...++|+.|+|
T Consensus 112 ~f~~PdlliV~Dp------~~e~~ai~EA~~l~IPvIalv 145 (208)
T 1vi6_A 112 EYREPEVVFVNDP------AIDKQAVSEATAVGIPVVALC 145 (208)
T ss_dssp TCCCCSEEEESCT------TTTHHHHHHHHHTTCCEEEEE
T ss_pred hhCCCCEEEEECC------CcchhHHHHHHHhCCCEEEEe
Confidence 3457898888741 123468899999999999999
No 122
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=53.81 E-value=93 Score=26.66 Aligned_cols=86 Identities=22% Similarity=0.235 Sum_probs=45.2
Q ss_pred CceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCC
Q psy17159 44 KTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFG 121 (326)
Q Consensus 44 ~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~ 121 (326)
++.+||++ --.....-+..+...++.+..+.+..+.+..... ++..-.+..+.+ ..+||||+.+...
T Consensus 15 ~s~~Igvi-~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~----------~~~~~~~~~~~l~~~~vdgiIi~~~~~ 83 (289)
T 2fep_A 15 KTTTVGVI-IPDISSIFYSELARGIEDIATMYKYNIILSNSDQ----------NMEKELHLLNTMLGKQVDGIVFMGGNI 83 (289)
T ss_dssp -CCEEEEE-ESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTT----------CHHHHHHHHHHHHHTTCSEEEECCSCC
T ss_pred CCCeEEEE-eCCCCCchHHHHHHHHHHHHHHcCCEEEEEeCCC----------CHHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 44678888 2111113356678888877776665554432221 111101112223 4799999987421
Q ss_pred CCCCchHHHHHHHHHHcCCCEEEEe
Q psy17159 122 KRGLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 122 ~~~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
. ...++.+.+.++|+.-+.
T Consensus 84 ~------~~~~~~l~~~~iPvV~~~ 102 (289)
T 2fep_A 84 T------DEHVAEFKRSPVPIVLAA 102 (289)
T ss_dssp C------HHHHHHHHHSSSCEEEES
T ss_pred C------HHHHHHHHhcCCCEEEEc
Confidence 1 124455556789987664
No 123
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=53.55 E-value=9.9 Score=32.24 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=20.8
Q ss_pred CCCEEEECCCCCCCCCchHHHHHHHHHHcCCC
Q psy17159 110 KVDGIIVPGGFGKRGLEGKIAACKWARENNKP 141 (326)
Q Consensus 110 ~~dglilpGG~~~~~~~~~~~~i~~~~~~~~P 141 (326)
.+|.||.+||-|.....-..+++..+.+...|
T Consensus 66 ~~DlVitTGGtg~g~~D~T~ea~~~~~~~~l~ 97 (195)
T 1di6_A 66 SCHLVLTTGGTGPARRDVTPDATLAVADREMP 97 (195)
T ss_dssp CCSEEEEESCCSSSTTCCHHHHHHHTCSEECH
T ss_pred CCCEEEECCCCCCCCCccHHHHHHHHhcccCc
Confidence 59999999987654444445566555444444
No 124
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=53.52 E-value=60 Score=27.87 Aligned_cols=86 Identities=16% Similarity=0.124 Sum_probs=46.5
Q ss_pred CceEEEEEcccCCC--chhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCC
Q psy17159 44 KTVTIGLVGKYTKF--EDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGG 119 (326)
Q Consensus 44 ~~~~I~iigdyg~~--~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG 119 (326)
++.+||++ --... ..-+..+...++.+..+.+..+.+...+... ..-.+..+.+ ..+||||+.+.
T Consensus 7 ~s~~Igvv-~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~----------~~~~~~~~~l~~~~vdgiIi~~~ 75 (288)
T 3gv0_A 7 KTNVIALV-LSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPHIHAK----------DSMVPIRYILETGSADGVIISKI 75 (288)
T ss_dssp CCCEEEEE-CBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCBSSGG----------GTTHHHHHHHHHTCCSEEEEESC
T ss_pred CCCEEEEE-ecCCccccHHHHHHHHHHHHHHHHcCCEEEEecCCcch----------hHHHHHHHHHHcCCccEEEEecC
Confidence 44678888 21110 1346778888888887766554443322111 0001122233 58999999864
Q ss_pred CCCCCCchHHHHHHHHHHcCCCEEEEe
Q psy17159 120 FGKRGLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 120 ~~~~~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
... . ..++.+.+.++|+.-+.
T Consensus 76 ~~~---~---~~~~~l~~~~iPvV~i~ 96 (288)
T 3gv0_A 76 EPN---D---PRVRFMTERNMPFVTHG 96 (288)
T ss_dssp CTT---C---HHHHHHHHTTCCEEEES
T ss_pred CCC---c---HHHHHHhhCCCCEEEEC
Confidence 221 1 23455556788887654
No 125
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=53.50 E-value=16 Score=30.09 Aligned_cols=69 Identities=9% Similarity=0.116 Sum_probs=37.0
Q ss_pred ceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCC------CCCchhhcchhhhhcCCCEEEECC
Q psy17159 45 TVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPK------TGNMAEYHKTWSDFCKVDGIIVPG 118 (326)
Q Consensus 45 ~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~------~~~~~~~~~~~~~l~~~dglilpG 118 (326)
++||.|| |++ .||-..+.+++.......+.+++++.+... +..... .++.....+ .+.+.++|+|||.-
T Consensus 4 mmkilii--~~S-~g~T~~la~~i~~~l~~~g~~v~~~~l~~~-~~~~~~~~~~~~~~d~~~~~~-~~~l~~aD~ii~gs 78 (199)
T 2zki_A 4 KPNILVL--FYG-YGSIVELAKEIGKGAEEAGAEVKIRRVRET-LPPEFQSRIPFDKVKDIPEVT-LDDMRWADGFAIGS 78 (199)
T ss_dssp CCEEEEE--ECC-SSHHHHHHHHHHHHHHHHSCEEEEEECCCC-SCGGGGTTCCGGGSTTSCBCC-HHHHHHCSEEEEEE
T ss_pred CcEEEEE--EeC-ccHHHHHHHHHHHHHHhCCCEEEEEehhHh-CChhhhhccCCCccccccccc-HHHHHhCCEEEEEC
Confidence 4689888 455 788777777776654444555665555432 111000 000000011 34678899998853
No 126
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=52.74 E-value=55 Score=29.90 Aligned_cols=60 Identities=13% Similarity=0.199 Sum_probs=36.7
Q ss_pred ceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECC
Q psy17159 45 TVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPG 118 (326)
Q Consensus 45 ~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpG 118 (326)
.+||+|+ |++..||-..+.+++.......+..+++..+.... . .+..+.+.++|+|||.-
T Consensus 252 ~~kv~i~--y~S~~Gnt~~lA~~i~~~l~~~g~~v~~~~~~~~~---------~---~~~~~~~~~~d~ii~gs 311 (402)
T 1e5d_A 252 TNKVVIF--YDSMWHSTEKMARVLAESFRDEGCTVKLMWCKACH---------H---SQIMSEISDAGAVIVGS 311 (402)
T ss_dssp CSEEEEE--ECCSSSHHHHHHHHHHHHHHHTTCEEEEEETTTSC---------H---HHHHHHHHTCSEEEEEC
T ss_pred CCcEEEE--EECCChhHHHHHHHHHHHHHhCCCeEEEEECCCCC---------H---HHHHHHHHHCCEEEEEC
Confidence 4789888 56777898888888876544334444444333111 1 11233568999999875
No 127
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=52.47 E-value=44 Score=29.48 Aligned_cols=34 Identities=24% Similarity=0.211 Sum_probs=26.1
Q ss_pred hhcCCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEe
Q psy17159 107 DFCKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 107 ~l~~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
.+..+|.||+..- .....+|+++...++|+.|+|
T Consensus 114 ~f~~PdllvV~Dp------~~d~~ai~EA~~l~IP~Ial~ 147 (252)
T 3u5c_A 114 SFKEPRLVIVTDP------RSDAQAIKEASYVNIPVIALT 147 (252)
T ss_dssp TCCCCSEEEESCT------TTTHHHHHHHHTTTCCEEEEE
T ss_pred hccCCceEEEeCC------ccchHHHHHHHHcCCCEEEEE
Confidence 3567899988742 123468888988999999999
No 128
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=51.92 E-value=1.1e+02 Score=26.26 Aligned_cols=88 Identities=16% Similarity=0.123 Sum_probs=46.6
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKR 123 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~ 123 (326)
.+||++ --.....-+..+...++......+. +.+...++.. ++..-.+..+.+ ..+||||+.+...
T Consensus 3 ~~Igvi-~~~~~~~~~~~~~~gi~~~a~~~g~-~~~~~~~~~~--------~~~~~~~~~~~~~~~~vdgiii~~~~~-- 70 (309)
T 2fvy_A 3 TRIGVT-IYKYDDNFMSVVRKAIEQDAKAAPD-VQLLMNDSQN--------DQSKQNDQIDVLLAKGVKALAINLVDP-- 70 (309)
T ss_dssp EEEEEE-ESCTTSHHHHHHHHHHHHHHHTCTT-EEEEEEECTT--------CHHHHHHHHHHHHHTTCSEEEECCSSG--
T ss_pred cEEEEE-eccCCcHHHHHHHHHHHHHHHhcCC-eEEEEecCCC--------CHHHHHHHHHHHHHcCCCEEEEeCCCc--
Confidence 578887 2211113356688888887776664 1333333211 111111112222 4799999976421
Q ss_pred CCchHHHHHHHHHHcCCCEEEEeh
Q psy17159 124 GLEGKIAACKWARENNKPFLGICL 147 (326)
Q Consensus 124 ~~~~~~~~i~~~~~~~~PvLGICl 147 (326)
......++.+.+.++|+.-+..
T Consensus 71 --~~~~~~~~~~~~~~iPvV~~~~ 92 (309)
T 2fvy_A 71 --AAAGTVIEKARGQNVPVVFFNK 92 (309)
T ss_dssp --GGHHHHHHHHHTTTCCEEEESS
T ss_pred --chhHHHHHHHHHCCCcEEEecC
Confidence 1223456666677899987654
No 129
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=50.76 E-value=10 Score=31.14 Aligned_cols=29 Identities=24% Similarity=0.316 Sum_probs=18.4
Q ss_pred hhc--CCCEEEECCCCCCCCCchHHHHHHHH
Q psy17159 107 DFC--KVDGIIVPGGFGKRGLEGKIAACKWA 135 (326)
Q Consensus 107 ~l~--~~dglilpGG~~~~~~~~~~~~i~~~ 135 (326)
.++ .+|.||.+||-|.....-..+++..+
T Consensus 67 ~~~~~~~DlVittGG~g~g~~D~t~ea~~~~ 97 (169)
T 1y5e_A 67 GYHKEDVDVVLTNGGTGITKRDVTIEAVSAL 97 (169)
T ss_dssp HHTCTTCSEEEEECCCSSSTTCCHHHHHHTT
T ss_pred HHhcCCCCEEEEcCCCCCCCCCCcHHHHHHH
Confidence 445 79999999987654433344555443
No 130
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=50.52 E-value=86 Score=27.11 Aligned_cols=86 Identities=16% Similarity=0.141 Sum_probs=46.1
Q ss_pred CceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCC
Q psy17159 44 KTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFG 121 (326)
Q Consensus 44 ~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~ 121 (326)
++.+||++ --.....-+..+...++....+.+..+.+...... +..-.+..+.+ ..+||||+.+...
T Consensus 14 ~s~~Igvi-~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~----------~~~~~~~~~~l~~~~vdgiI~~~~~~ 82 (303)
T 3kke_A 14 RSGTIGLI-VPDVNNAVFADMFSGVQMAASGHSTDVLLGQIDAP----------PRGTQQLSRLVSEGRVDGVLLQRRED 82 (303)
T ss_dssp ---CEEEE-ESCTTSTTHHHHHHHHHHHHHHTTCCEEEEECCST----------THHHHHHHHHHHSCSSSEEEECCCTT
T ss_pred CCCEEEEE-eCCCcChHHHHHHHHHHHHHHHCCCEEEEEeCCCC----------hHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 34568887 22111134677888888887777766665443321 11101122233 4799999987532
Q ss_pred CCCCchHHHHHHHHHHcCCCEEEEe
Q psy17159 122 KRGLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 122 ~~~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
.. . +.++.+.+ ++|+.-+.
T Consensus 83 ~~---~--~~~~~l~~-~iPvV~i~ 101 (303)
T 3kke_A 83 FD---D--DMLAAVLE-GVPAVTIN 101 (303)
T ss_dssp CC---H--HHHHHHHT-TSCEEEES
T ss_pred Cc---H--HHHHHHhC-CCCEEEEC
Confidence 21 1 14555556 89987664
No 131
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=50.34 E-value=48 Score=29.53 Aligned_cols=86 Identities=8% Similarity=0.084 Sum_probs=48.6
Q ss_pred eEEEEEcccCCCc-hhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchh-hcchhhhhc---CCCEEEECCCC
Q psy17159 46 VTIGLVGKYTKFE-DCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAE-YHKTWSDFC---KVDGIIVPGGF 120 (326)
Q Consensus 46 ~~I~iigdyg~~~-~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~-~~~~~~~l~---~~dglilpGG~ 120 (326)
.+|+++ --+... .-+..+.+.++.+..+.+..+.+...+. ++.+ .+.+...+. .+||||+.+.
T Consensus 4 ~~Ig~i-~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~----------~~~~~~~~i~~~i~~~~~vDgiIi~~~- 71 (350)
T 3h75_A 4 TSVVFL-NPGNSTETFWVSYSQFMQAAARDLGLDLRILYAER----------DPQNTLQQARELFQGRDKPDYLMLVNE- 71 (350)
T ss_dssp CEEEEE-ECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEECTT----------CHHHHHHHHHHHHHSSSCCSEEEEECC-
T ss_pred CEEEEE-CCCCCCChHHHHHHHHHHHHHHHcCCeEEEEECCC----------CHHHHHHHHHHHHhcCCCCCEEEEeCc-
Confidence 578887 222211 2356688888888777666655543321 1111 011222333 8999999752
Q ss_pred CCCCCchHHHHHHHHHHcCCCEEEEeh
Q psy17159 121 GKRGLEGKIAACKWARENNKPFLGICL 147 (326)
Q Consensus 121 ~~~~~~~~~~~i~~~~~~~~PvLGICl 147 (326)
. ......++.+.+.++|+.-+..
T Consensus 72 ~----~~~~~~~~~~~~~giPvV~~~~ 94 (350)
T 3h75_A 72 Q----YVAPQILRLSQGSGIKLFIVNS 94 (350)
T ss_dssp S----SHHHHHHHHHTTSCCEEEEEES
T ss_pred h----hhHHHHHHHHHhCCCcEEEEcC
Confidence 1 1334566777778999887753
No 132
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=49.13 E-value=22 Score=28.97 Aligned_cols=32 Identities=22% Similarity=0.098 Sum_probs=19.6
Q ss_pred CCCEEEECCCCCCCCCchHHHHHHHHHHcCCC
Q psy17159 110 KVDGIIVPGGFGKRGLEGKIAACKWARENNKP 141 (326)
Q Consensus 110 ~~dglilpGG~~~~~~~~~~~~i~~~~~~~~P 141 (326)
.+|-||.+||-|.....-..+++..+.+...|
T Consensus 69 ~~DlVittGG~g~~~~D~t~ea~~~~~~~~l~ 100 (167)
T 2g2c_A 69 GARFIITAGGTGIRAKNQTPEATASFIHTRCE 100 (167)
T ss_dssp TCSEEEEESCCSSSTTCCHHHHHHTTCSEECH
T ss_pred CCCEEEECCCCCCCCCcChHHHHHHHhCCcCc
Confidence 49999999987654443445555544333333
No 133
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=48.96 E-value=45 Score=30.25 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=25.4
Q ss_pred hcCCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEe
Q psy17159 108 FCKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 108 l~~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
+..+|.||+..- .....+|+++...++|+.|+|
T Consensus 120 f~ePdllvV~Dp------~~d~qAI~EA~~lnIPtIALv 152 (305)
T 3iz6_A 120 FSEPRLLILTDP------RTDHQPIKESALGNIPTIAFC 152 (305)
T ss_dssp SSCCSEEEESCT------TTTHHHHHHHHHHTCCEEEEE
T ss_pred ccCCceeEEeCc------ccchHHHHHHHHcCCCEEEEE
Confidence 467899988741 123467888888999999999
No 134
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=48.74 E-value=41 Score=28.96 Aligned_cols=85 Identities=15% Similarity=0.269 Sum_probs=44.3
Q ss_pred CceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCC
Q psy17159 44 KTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFG 121 (326)
Q Consensus 44 ~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~ 121 (326)
++.+||++ --.....-+..+...++.+..+.+..+.+..... ++..-.+..+.+ ..+||||+.+...
T Consensus 7 ~~~~Igvv-~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~----------~~~~~~~~~~~l~~~~vdgiIi~~~~~ 75 (291)
T 3egc_A 7 RSNVVGLI-VSDIENVFFAEVASGVESEARHKGYSVLLANTAE----------DIVREREAVGQFFERRVDGLILAPSEG 75 (291)
T ss_dssp CCCEEEEE-ESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTT----------CHHHHHHHHHHHHHTTCSEEEECCCSS
T ss_pred CCcEEEEE-ECCCcchHHHHHHHHHHHHHHHCCCEEEEEeCCC----------CHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 44678888 2222113356688888888777766555543321 111101112223 4799999987532
Q ss_pred CCCCchHHHHHHHHHHcCCCEEEE
Q psy17159 122 KRGLEGKIAACKWARENNKPFLGI 145 (326)
Q Consensus 122 ~~~~~~~~~~i~~~~~~~~PvLGI 145 (326)
. . ..++.+.+.++|+.-+
T Consensus 76 ~---~---~~~~~~~~~~iPvV~~ 93 (291)
T 3egc_A 76 E---H---DYLRTELPKTFPIVAV 93 (291)
T ss_dssp C---C---HHHHHSSCTTSCEEEE
T ss_pred C---h---HHHHHhhccCCCEEEE
Confidence 1 1 2333333456776544
No 135
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=47.98 E-value=31 Score=30.15 Aligned_cols=72 Identities=7% Similarity=-0.063 Sum_probs=34.7
Q ss_pred CCceEEEEEcccCCCc--hhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEEC
Q psy17159 43 NKTVTIGLVGKYTKFE--DCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVP 117 (326)
Q Consensus 43 ~~~~~I~iigdyg~~~--~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilp 117 (326)
..++||++| +|+.. ++-..+.+++.......+.+++++.+....+..... ..++...++.+.+..+|+|||.
T Consensus 32 ~~~mkIliI--~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~-~~~d~~~~l~~~i~~AD~iI~~ 105 (247)
T 2q62_A 32 THRPRILIL--YGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAP-VSHPKVQELRELSIWSEGQVWV 105 (247)
T ss_dssp CSCCEEEEE--ECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSC-TTSHHHHHHHHHHHHCSEEEEE
T ss_pred CCCCeEEEE--EccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCC-CCCHHHHHHHHHHHHCCEEEEE
Confidence 345788888 34433 333445555544433334444443332211111000 0122334456677899999985
No 136
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=47.80 E-value=63 Score=27.40 Aligned_cols=83 Identities=16% Similarity=0.212 Sum_probs=44.3
Q ss_pred CceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCC
Q psy17159 44 KTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFG 121 (326)
Q Consensus 44 ~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~ 121 (326)
++.+||++ --.....-+..+...++.+..+.+..+.+...+.. +..-.+..+.+ ..+||||+.+.
T Consensus 7 ~~~~Ig~i-~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~----------~~~~~~~~~~l~~~~~dgiIi~~~-- 73 (277)
T 3e61_A 7 KSKLIGLL-LPDMSNPFFTLIARGVEDVALAHGYQVLIGNSDND----------IKKAQGYLATFVSHNCTGMISTAF-- 73 (277)
T ss_dssp ---CEEEE-ESCTTSHHHHHHHHHHHHHHHHTTCCEEEEECTTC----------HHHHHHHHHHHHHTTCSEEEECGG--
T ss_pred CCCEEEEE-ECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCC----------HHHHHHHHHHHHhCCCCEEEEecC--
Confidence 34568887 22211134666888888887777666555433311 11101112223 47999999871
Q ss_pred CCCCchHHHHHH-HHHHcCCCEEEE
Q psy17159 122 KRGLEGKIAACK-WARENNKPFLGI 145 (326)
Q Consensus 122 ~~~~~~~~~~i~-~~~~~~~PvLGI 145 (326)
. ...++ .+.+.++|+.-+
T Consensus 74 ---~---~~~~~~~l~~~~iPvV~~ 92 (277)
T 3e61_A 74 ---N---ENIIENTLTDHHIPFVFI 92 (277)
T ss_dssp ---G---HHHHHHHHHHC-CCEEEG
T ss_pred ---C---hHHHHHHHHcCCCCEEEE
Confidence 1 23455 666789998765
No 137
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=47.39 E-value=1.4e+02 Score=26.02 Aligned_cols=91 Identities=13% Similarity=0.120 Sum_probs=47.1
Q ss_pred CCceEEEEEcccC-CCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCC
Q psy17159 43 NKTVTIGLVGKYT-KFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGG 119 (326)
Q Consensus 43 ~~~~~I~iigdyg-~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG 119 (326)
.++.+||++ -.. ....-+..+...++......+..+.+.+.++.. ..++..-.+..+.+ ..+||||+++.
T Consensus 41 ~~~~~Igvi-~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~------~~~~~~~~~~i~~l~~~~vdgiIi~~~ 113 (342)
T 1jx6_A 41 QRPIKISVV-YPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRP------NADIKQQSLSLMEALKSKSDYLIFTLD 113 (342)
T ss_dssp SSCEEEEEE-ECCCSSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCT------TCCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCceEEEEE-ecCCcccHHHHHHHHHHHHHHHHcCCeEEEEecCCCC------ccCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 345688888 222 111346678888888777766666655433210 00111100112222 47999999542
Q ss_pred CCCCCCchHHHHHHHHHHcCCCEEEE
Q psy17159 120 FGKRGLEGKIAACKWARENNKPFLGI 145 (326)
Q Consensus 120 ~~~~~~~~~~~~i~~~~~~~~PvLGI 145 (326)
.. . ....++.+.+.++|+.-+
T Consensus 114 ~~--~---~~~~~~~~~~~~ip~V~~ 134 (342)
T 1jx6_A 114 TT--R---HRKFVEHVLDSTNTKLIL 134 (342)
T ss_dssp SS--T---THHHHHHHHHHCSCEEEE
T ss_pred hH--h---HHHHHHHHHHcCCCEEEE
Confidence 21 1 123455555668897655
No 138
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=47.27 E-value=1e+02 Score=26.91 Aligned_cols=87 Identities=9% Similarity=0.097 Sum_probs=44.8
Q ss_pred CceEEEEEcccCCCchhHHHHHHHHHHHhhhc-CCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCC
Q psy17159 44 KTVTIGLVGKYTKFEDCYASLTRALEHASYHS-NRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGF 120 (326)
Q Consensus 44 ~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~-~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~ 120 (326)
++.+||++ -... ..-+..+...++.+.... +..+.+ .+... ++..-.+..+.+ ..+||||+.+..
T Consensus 5 ~~~~Igvi-~~~~-~~~~~~~~~gi~~~a~~~~g~~l~i--~~~~~--------~~~~~~~~i~~l~~~~vdgiIi~~~~ 72 (325)
T 2x7x_A 5 PHFRIGVA-QCSD-DSWRHKMNDEILREAMFYNGVSVEI--RSAGD--------DNSKQAEDVHYFMDEGVDLLIISANE 72 (325)
T ss_dssp -CCEEEEE-ESCC-SHHHHHHHHHHHHHHTTSSSCEEEE--EECTT--------CHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred CCeEEEEE-ecCC-CHHHHHHHHHHHHHHHHcCCcEEEE--eCCCC--------CHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 34678888 2221 123445777888776655 544443 33211 111111111222 479999998642
Q ss_pred CCCCCchHHHHHHHHHHcCCCEEEEe
Q psy17159 121 GKRGLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 121 ~~~~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
. ......++.+.+.++|+.-+.
T Consensus 73 ~----~~~~~~~~~~~~~~iPvV~~~ 94 (325)
T 2x7x_A 73 A----APMTPIVEEAYQKGIPVILVD 94 (325)
T ss_dssp H----HHHHHHHHHHHHTTCCEEEES
T ss_pred H----HHHHHHHHHHHHCCCeEEEeC
Confidence 1 122345566666789987653
No 139
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=47.23 E-value=37 Score=30.73 Aligned_cols=33 Identities=18% Similarity=0.234 Sum_probs=25.4
Q ss_pred hcCCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEe
Q psy17159 108 FCKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 108 l~~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
+..+|.||+..- .....+|+++...++|+.|+|
T Consensus 116 f~~PdlliV~Dp------~~e~~AI~EA~~lgIPvIalv 148 (295)
T 2zkq_b 116 FREPRLLVVTDP------RADHQPLTEASYVNLPTIALC 148 (295)
T ss_dssp CCCCSEEEESCT------TTTHHHHHHHHHHTCCEEEEE
T ss_pred ccCCCeEEEeCC------CcchhHHHHHHHhCCCEEEEe
Confidence 467888888742 123468899999999999999
No 140
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=46.67 E-value=61 Score=28.11 Aligned_cols=86 Identities=19% Similarity=0.255 Sum_probs=45.7
Q ss_pred CceEEEEEcccC-----CCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEE
Q psy17159 44 KTVTIGLVGKYT-----KFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIV 116 (326)
Q Consensus 44 ~~~~I~iigdyg-----~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglil 116 (326)
++.+||++ --. ....-+..+...++....+.+..+.+...+. ++..-.+..+.+ ..+||||+
T Consensus 21 ~~~~Igvi-~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~----------~~~~~~~~~~~l~~~~vdgiIi 89 (305)
T 3huu_A 21 KTLTIGLI-QKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTVSEN----------SGDLYHEVKTMIQSKSVDGFIL 89 (305)
T ss_dssp CCCEEEEE-CSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEECCCSS----------HHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCEEEEE-eCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEEeCCC----------ChHHHHHHHHHHHhCCCCEEEE
Confidence 44679988 222 1112356677778777766665544432221 111101112223 47999999
Q ss_pred CCCCCCCCCchHHHHHHHHHHcCCCEEEEe
Q psy17159 117 PGGFGKRGLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 117 pGG~~~~~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
.+.... . ..++.+.+.++|+.-+.
T Consensus 90 ~~~~~~---~---~~~~~l~~~~iPvV~i~ 113 (305)
T 3huu_A 90 LYSLKD---D---PIEHLLNEFKVPYLIVG 113 (305)
T ss_dssp SSCBTT---C---HHHHHHHHTTCCEEEES
T ss_pred eCCcCC---c---HHHHHHHHcCCCEEEEC
Confidence 875321 1 34455556789987654
No 141
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=46.35 E-value=69 Score=27.47 Aligned_cols=86 Identities=8% Similarity=-0.003 Sum_probs=41.1
Q ss_pred CceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEE-EeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCC
Q psy17159 44 KTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLK-YFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGF 120 (326)
Q Consensus 44 ~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~-~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~ 120 (326)
++.+||++ --.....-+..+...++.+..+.+..+.+. .... ..+. -.+..+.+ ..+||||+.+..
T Consensus 7 ~~~~Ig~i-~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-~~~~---------~~~~~~~l~~~~vdgiI~~~~~ 75 (290)
T 3clk_A 7 SSNVIAAV-VSSVRTNFAQQILDGIQEEAHKNGYNLIIVYSGSA-DPEE---------QKHALLTAIERPVMGILLLSIA 75 (290)
T ss_dssp -CCEEEEE-CCCCSSSHHHHHHHHHHHHHHTTTCEEEEEC--------------------CHHHHHHSSCCSEEEEESCC
T ss_pred cCCEEEEE-eCCCCChHHHHHHHHHHHHHHHcCCeEEEEeCCCC-CHHH---------HHHHHHHHHhcCCCEEEEeccc
Confidence 44679988 211111346678888888877666555544 2111 1000 00112223 479999987643
Q ss_pred CCCCCchHHHHHHHHHHcCCCEEEEe
Q psy17159 121 GKRGLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 121 ~~~~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
... ..++.+.+.++|+.-+.
T Consensus 76 ~~~------~~~~~l~~~~iPvV~~~ 95 (290)
T 3clk_A 76 LTD------DNLQLLQSSDVPYCFLS 95 (290)
T ss_dssp ----------CHHHHHCC--CEEEES
T ss_pred CCH------HHHHHHHhCCCCEEEEc
Confidence 211 22344445688987664
No 142
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=46.35 E-value=99 Score=26.46 Aligned_cols=89 Identities=16% Similarity=0.033 Sum_probs=46.2
Q ss_pred ceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCC
Q psy17159 45 TVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGK 122 (326)
Q Consensus 45 ~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~ 122 (326)
+.+|+++-. ..-..-+..+.+.++.+..+.+.. +.++.... .++..-.+..+.+ ..+||||+.+..
T Consensus 4 ~~~Ig~i~~-~~~~~~~~~~~~g~~~~~~~~g~~--~~~~~~~~-------~~~~~~~~~~~~l~~~~vdgiii~~~~-- 71 (303)
T 3d02_A 4 EKTVVNISK-VDGMPWFNRMGEGVVQAGKEFNLN--ASQVGPSS-------TDAPQQVKIIEDLIARKVDAITIVPND-- 71 (303)
T ss_dssp CEEEEEECS-CSSCHHHHHHHHHHHHHHHHTTEE--EEEECCSS-------SCHHHHHHHHHHHHHTTCSEEEECCSC--
T ss_pred ceEEEEEec-cCCChHHHHHHHHHHHHHHHcCCE--EEEECCCC-------CCHHHHHHHHHHHHHcCCCEEEEecCC--
Confidence 468999822 111133566777887777665533 33322110 1111111112222 479999997642
Q ss_pred CCCchHHHHHHHHHHcCCCEEEEeh
Q psy17159 123 RGLEGKIAACKWARENNKPFLGICL 147 (326)
Q Consensus 123 ~~~~~~~~~i~~~~~~~~PvLGICl 147 (326)
.......++.+.+.++|+.-+..
T Consensus 72 --~~~~~~~~~~~~~~~ipvV~~~~ 94 (303)
T 3d02_A 72 --ANVLEPVFKKARDAGIVVLTNES 94 (303)
T ss_dssp --HHHHHHHHHHHHHTTCEEEEESC
T ss_pred --hHHHHHHHHHHHHCCCeEEEEec
Confidence 11223456666677899876643
No 143
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=46.33 E-value=91 Score=27.04 Aligned_cols=86 Identities=17% Similarity=0.210 Sum_probs=43.5
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKR 123 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~ 123 (326)
.+|+++-.. . .+-+..+.+.++.+..+.+..+.+..... .++....+..+.+ ..+||||+.+....
T Consensus 2 ~~Ig~i~~~-~-~~~~~~~~~gi~~~~~~~g~~~~~~~~~~---------~~~~~~~~~i~~l~~~~vdgiIi~~~~~~- 69 (313)
T 2h3h_A 2 LTIGVIGKS-V-HPYWSQVEQGVKAAGKALGVDTKFFVPQK---------EDINAQLQMLESFIAEGVNGIAIAPSDPT- 69 (313)
T ss_dssp CEEEEECSC-S-SHHHHHHHHHHHHHHHHHTCEEEEECCSS---------SCHHHHHHHHHHHHHTTCSEEEECCSSTT-
T ss_pred eEEEEEeCC-C-cHHHHHHHHHHHHHHHHcCCEEEEECCCC---------CCHHHHHHHHHHHHHcCCCEEEEeCCChH-
Confidence 478888221 1 12344567777776665554443322111 0111111111222 57999999764321
Q ss_pred CCchHHHHHHHHHHcCCCEEEEe
Q psy17159 124 GLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 124 ~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
.....++.+.+.++|+..+.
T Consensus 70 ---~~~~~~~~~~~~~iPvV~~~ 89 (313)
T 2h3h_A 70 ---AVIPTIKKALEMGIPVVTLD 89 (313)
T ss_dssp ---TTHHHHHHHHHTTCCEEEES
T ss_pred ---HHHHHHHHHHHCCCeEEEeC
Confidence 12245566667789988764
No 144
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=45.90 E-value=50 Score=26.77 Aligned_cols=94 Identities=13% Similarity=0.018 Sum_probs=50.4
Q ss_pred eEEEEEcccCCCch---hHHHHHHHHHHHhhhcCCceEEEEeecccccCCC---CCCCchhhcchhhhhcCCCEEEECCC
Q psy17159 46 VTIGLVGKYTKFED---CYASLTRALEHASYHSNRHLQLKYFDSELLSMDP---KTGNMAEYHKTWSDFCKVDGIIVPGG 119 (326)
Q Consensus 46 ~~I~iigdyg~~~~---~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~---~~~~~~~~~~~~~~l~~~dglilpGG 119 (326)
+||=+-|-+..... .|..+...|+..|. + ...++.+..++... ......-|+...+.+..+|.||.-..
T Consensus 3 mkIYlAGP~f~~~e~~~~~~~i~~~L~~~G~-V----l~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~ 77 (152)
T 4fyk_A 3 RSVYFCGSIRGGREDQALYARIVSRLRRYGK-V----LTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT 77 (152)
T ss_dssp CEEEEECCSTTCCTTHHHHHHHHHHHTTTSE-E----CCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS
T ss_pred ceEEEECCCCCcHHHHHHHHHHHHHHHHcCc-c----cccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC
Confidence 46666665544222 35667777776662 2 11233322221110 01122233444456789999987543
Q ss_pred CCCCCCchHHHHHHHHHHcCCCEEEEeh
Q psy17159 120 FGKRGLEGKIAACKWARENNKPFLGICL 147 (326)
Q Consensus 120 ~~~~~~~~~~~~i~~~~~~~~PvLGICl 147 (326)
....|..-.+-++.+.++||++.|.
T Consensus 78 ---~~d~Gt~~EiG~A~algkPV~~l~~ 102 (152)
T 4fyk_A 78 ---QPSLGVGYELGRAVALGKPILCLFR 102 (152)
T ss_dssp ---SCCHHHHHHHHHHHHTTCCEEEEEC
T ss_pred ---CCCCCHHHHHHHHHHcCCeEEEEEe
Confidence 2235666677788889999999986
No 145
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=45.63 E-value=1.3e+02 Score=25.48 Aligned_cols=84 Identities=19% Similarity=0.260 Sum_probs=42.7
Q ss_pred EEEEEc-ccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCC
Q psy17159 47 TIGLVG-KYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKR 123 (326)
Q Consensus 47 ~I~iig-dyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~ 123 (326)
+||++- +... .-+..+...++.+..+.+..+.+ .+... ++..-.+..+.+ ..+||||+.+....
T Consensus 4 ~Ig~i~~~~~~--~~~~~~~~gi~~~~~~~g~~~~~--~~~~~--------~~~~~~~~~~~l~~~~vdgiI~~~~~~~- 70 (290)
T 2fn9_A 4 KMAIVISTLNN--PWFVVLAETAKQRAEQLGYEATI--FDSQN--------DTAKESAHFDAIIAAGYDAIIFNPTDAD- 70 (290)
T ss_dssp EEEEEESCSSS--HHHHHHHHHHHHHHHHTTCEEEE--EECTT--------CHHHHHHHHHHHHHTTCSEEEECCSCTT-
T ss_pred EEEEEeCCCCC--hHHHHHHHHHHHHHHHcCCEEEE--eCCCC--------CHHHHHHHHHHHHHcCCCEEEEecCChH-
Confidence 677772 2211 23556777777776666554443 33210 111111112222 47999999864221
Q ss_pred CCchHHHHHHHHHHcCCCEEEEe
Q psy17159 124 GLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 124 ~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
.....++.+.+.++|+.-+.
T Consensus 71 ---~~~~~~~~~~~~~iPvV~~~ 90 (290)
T 2fn9_A 71 ---GSIANVKRAKEAGIPVFCVD 90 (290)
T ss_dssp ---TTHHHHHHHHHTTCCEEEES
T ss_pred ---HHHHHHHHHHHCCCeEEEEe
Confidence 11234555656788987553
No 146
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=45.13 E-value=29 Score=27.91 Aligned_cols=56 Identities=11% Similarity=0.061 Sum_probs=33.8
Q ss_pred ceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECC
Q psy17159 45 TVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPG 118 (326)
Q Consensus 45 ~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpG 118 (326)
+++|.|+ |++..||-..+.+.|.......+..+.+..++... ...+.++|.|||..
T Consensus 9 ~~ki~I~--Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~----------------~~~l~~~d~ii~g~ 64 (167)
T 1ykg_A 9 MPGITII--SASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYK----------------FKQIASEKLLIVVT 64 (167)
T ss_dssp ---CEEE--EECSSSHHHHHHHHHHHHHHHHTCCCEEEEGGGCC----------------GGGGGGCSEEEEEE
T ss_pred CCeEEEE--EECCchHHHHHHHHHHHHHHHCCCceEEeehhhCC----------------HHHhccCCeEEEEE
Confidence 3578777 77878998889888877544334445544433110 12567889888754
No 147
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=44.04 E-value=89 Score=26.30 Aligned_cols=85 Identities=22% Similarity=0.341 Sum_probs=43.3
Q ss_pred ceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCC
Q psy17159 45 TVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGK 122 (326)
Q Consensus 45 ~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~ 122 (326)
+.+||++ --.....-+..+.+.++......+..+.+..... ++..-.+..+.+ ..+||||+.+....
T Consensus 3 s~~Ig~i-~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~----------~~~~~~~~~~~l~~~~vdgii~~~~~~~ 71 (275)
T 3d8u_A 3 AYSIALI-IPSLFEKACAHFLPSFQQALNKAGYQLLLGYSDY----------SIEQEEKLLSTFLESRPAGVVLFGSEHS 71 (275)
T ss_dssp -CEEEEE-ESCSSCHHHHHHHHHHHHHHHHTSCEECCEECTT----------CHHHHHHHHHHHHTSCCCCEEEESSCCC
T ss_pred ceEEEEE-eCCCccccHHHHHHHHHHHHHHCCCEEEEEcCCC----------CHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 3578887 2111113456677888877766655443322211 111111112222 47999999864321
Q ss_pred CCCchHHHHHHHHHHcCCCEEEEe
Q psy17159 123 RGLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 123 ~~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
. ..++.+.+.++|+.-+.
T Consensus 72 ---~---~~~~~l~~~~iPvV~~~ 89 (275)
T 3d8u_A 72 ---Q---RTHQLLEASNTPVLEIA 89 (275)
T ss_dssp ---H---HHHHHHHHHTCCEEEES
T ss_pred ---H---HHHHHHHhCCCCEEEEe
Confidence 1 33455556689987764
No 148
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=43.96 E-value=10 Score=31.89 Aligned_cols=27 Identities=22% Similarity=0.163 Sum_probs=18.0
Q ss_pred CCCEEEECCCCCCCCCchHHHHHHHHH
Q psy17159 110 KVDGIIVPGGFGKRGLEGKIAACKWAR 136 (326)
Q Consensus 110 ~~dglilpGG~~~~~~~~~~~~i~~~~ 136 (326)
.+|.||.+||-|.....-..+++..+.
T Consensus 78 ~~DlVIttGGtg~g~~D~t~eal~~~~ 104 (189)
T 1jlj_A 78 ELNLILTTGGTGFAPRDVTPEATKEVI 104 (189)
T ss_dssp CCSEEEEESCCSSSTTCCHHHHHHHHC
T ss_pred CCCEEEEcCCCCCCCcccHHHHHHHHh
Confidence 699999999876544334455555543
No 149
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=43.81 E-value=42 Score=26.66 Aligned_cols=53 Identities=17% Similarity=0.229 Sum_probs=33.5
Q ss_pred EEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECC
Q psy17159 47 TIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPG 118 (326)
Q Consensus 47 ~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpG 118 (326)
||.|+ |++..||-..+.+.|....... ..+++.-+... + .+.+.++|.|||.-
T Consensus 2 kilIv--Y~S~tGnT~~vA~~ia~~l~~~-~~v~~~~~~~~---------~-------~~~l~~~d~ii~g~ 54 (169)
T 1czn_A 2 KIGLF--YGTQTGVTQTIAESIQQEFGGE-SIVDLNDIANA---------D-------ASDLNAYDYLIIGC 54 (169)
T ss_dssp CEEEE--ECCSSSHHHHHHHHHHHHHTST-TTEEEEEGGGC---------C-------GGGGGGCSEEEEEC
T ss_pred eEEEE--EECCCcHHHHHHHHHHHHhCcc-cceEEEEhhhC---------C-------HhHHhhCCEEEEEe
Confidence 57777 7788899889998887764321 23444433311 0 12577899998854
No 150
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=42.73 E-value=44 Score=28.74 Aligned_cols=88 Identities=11% Similarity=0.019 Sum_probs=45.6
Q ss_pred CceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCC
Q psy17159 44 KTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFG 121 (326)
Q Consensus 44 ~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~ 121 (326)
++.+||++ --.....-+..+...++++..+.+..+.+...+.. .++....+..+.+ ..+||||+.+...
T Consensus 4 ~~~~Igvi-~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~vdgiii~~~~~ 74 (304)
T 3o1i_D 4 SDEKICAI-YPHLKDSYWLSVNYGMVSEAEKQGVNLRVLEAGGY--------PNKSRQEQQLALCTQWGANAIILGTVDP 74 (304)
T ss_dssp -CCEEEEE-ESCSCSHHHHHHHHHHHHHHHHHTCEEEEEECSST--------TCHHHHHHHHHHHHHHTCSEEEECCSST
T ss_pred CCcEEEEE-eCCCCCcHHHHHHHHHHHHHHHcCCeEEEEcCCCC--------CCHHHHHHHHHHHHHcCCCEEEEeCCCh
Confidence 34678887 22111134666888888877766655554433310 0111111111222 4799999987432
Q ss_pred CCCCchHHHHHHHHHHcCCCEEEE
Q psy17159 122 KRGLEGKIAACKWARENNKPFLGI 145 (326)
Q Consensus 122 ~~~~~~~~~~i~~~~~~~~PvLGI 145 (326)
. ... ..++.+. .++|+.-+
T Consensus 75 ~-~~~---~~~~~~~-~~iPvV~~ 93 (304)
T 3o1i_D 75 H-AYE---HNLKSWV-GNTPVFAT 93 (304)
T ss_dssp T-SST---TTHHHHT-TTSCEEEC
T ss_pred h-HHH---HHHHHHc-CCCCEEEe
Confidence 2 111 2345555 78998876
No 151
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=42.48 E-value=60 Score=28.61 Aligned_cols=82 Identities=12% Similarity=0.023 Sum_probs=47.1
Q ss_pred ceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCCC
Q psy17159 45 TVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRG 124 (326)
Q Consensus 45 ~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~~ 124 (326)
+.+|.|||+- .....-..+..+|+..|..+ .++++..+.. ..+.|.++|.||++.-....-
T Consensus 4 m~~vLiV~g~-~~~~~a~~l~~aL~~~g~~V------~~i~~~~~~~------------~~~~L~~yDvIIl~d~~~~~l 64 (259)
T 3rht_A 4 MTRVLYCGDT-SLETAAGYLAGLMTSWQWEF------DYIPSHVGLD------------VGELLAKQDLVILSDYPAERM 64 (259)
T ss_dssp --CEEEEESS-CTTTTHHHHHHHHHHTTCCC------EEECTTSCBC------------SSHHHHTCSEEEEESCCGGGB
T ss_pred CceEEEECCC-CchhHHHHHHHHHHhCCceE------EEeccccccc------------ChhHHhcCCEEEEcCCccccC
Confidence 3578899431 11123456777888777643 3455433211 124789999999985222111
Q ss_pred CchHHHHHHHHHHcCCCEEEE
Q psy17159 125 LEGKIAACKWARENNKPFLGI 145 (326)
Q Consensus 125 ~~~~~~~i~~~~~~~~PvLGI 145 (326)
.....+.|+.+++++.=++.+
T Consensus 65 ~~~~~~~L~~yV~~GGgLi~~ 85 (259)
T 3rht_A 65 TAQAIDQLVTMVKAGCGLVML 85 (259)
T ss_dssp CHHHHHHHHHHHHTTCEEEEE
T ss_pred CHHHHHHHHHHHHhCCeEEEe
Confidence 234667888888877666665
No 152
>1ehs_A STB, heat-stable enterotoxin B; disulfide; NMR {Escherichia coli} SCOP: g.2.1.1
Probab=42.41 E-value=3.7 Score=25.50 Aligned_cols=16 Identities=38% Similarity=0.617 Sum_probs=12.3
Q ss_pred EEEEehhHHHHHHHhC
Q psy17159 142 FLGICLGLQAAVIEYG 157 (326)
Q Consensus 142 vLGIClG~QlL~~~~g 157 (326)
.-|-|+|.|+|..+-|
T Consensus 32 tagacfgaqimvaakg 47 (48)
T 1ehs_A 32 TAGACFGAQIMVAAKG 47 (48)
T ss_dssp SCCTTTTTHHHHTTTT
T ss_pred ccccccchhHhhhccc
Confidence 4578999999986543
No 153
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=42.34 E-value=1.1e+02 Score=27.02 Aligned_cols=85 Identities=12% Similarity=0.115 Sum_probs=46.8
Q ss_pred CceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCC
Q psy17159 44 KTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFG 121 (326)
Q Consensus 44 ~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~ 121 (326)
++.+||++ --.....-|..+.+.++....+.+..+.+...+. ++..-.+..+.+ ..+||||+.+...
T Consensus 67 ~~~~Ig~i-~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~----------~~~~~~~~i~~l~~~~vdGiIi~~~~~ 135 (344)
T 3kjx_A 67 RVNLVAVI-IPSLSNMVFPEVLTGINQVLEDTELQPVVGVTDY----------LPEKEEKVLYEMLSWRPSGVIIAGLEH 135 (344)
T ss_dssp CCSEEEEE-ESCSSSSSHHHHHHHHHHHHTSSSSEEEEEECTT----------CHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred CCCEEEEE-eCCCCcHHHHHHHHHHHHHHHHCCCEEEEEeCCC----------CHHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 34578887 2111113467788888888877666654433221 111111112222 3799999986422
Q ss_pred CCCCchHHHHHHHHHHcCCCEEEE
Q psy17159 122 KRGLEGKIAACKWARENNKPFLGI 145 (326)
Q Consensus 122 ~~~~~~~~~~i~~~~~~~~PvLGI 145 (326)
. . ..++.+.+.++|+.-+
T Consensus 136 ~---~---~~~~~l~~~~iPvV~i 153 (344)
T 3kjx_A 136 S---E---AARAMLDAAGIPVVEI 153 (344)
T ss_dssp C---H---HHHHHHHHCSSCEEEE
T ss_pred C---H---HHHHHHHhCCCCEEEE
Confidence 1 1 3455555678998766
No 154
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=42.15 E-value=1.3e+02 Score=27.14 Aligned_cols=96 Identities=10% Similarity=0.032 Sum_probs=51.0
Q ss_pred HHHHHHHhhcCCCCCCCeeeCCCCCcccccch----------hhhhcCCCceEEEEEcccCCCchhHHHHHHHHHHHhhh
Q psy17159 5 ESVRAKISMFCHVTPENVIFNPDVKPIYKVRM----------LRIDRLNKTVTIGLVGKYTKFEDCYASLTRALEHASYH 74 (326)
Q Consensus 5 ~~~~~ki~~~~~~~~~~v~~~~~~~~~y~~p~----------~~~~~~~~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~ 74 (326)
....+.+|.+++|| |||.-+ -.+-|. +.+. .-+++||+++||.+ ..-+|.+.++...|.
T Consensus 111 ~~~~~~lA~~~~vP---VINag~---~~~HPtQaLaDl~Ti~e~~g-~l~glkva~vGD~~---~va~Sl~~~~~~~G~- 179 (309)
T 4f2g_A 111 QDIIQRFAENSRVP---VINGLT---NEYHPCQVLADIFTYYEHRG-PIRGKTVAWVGDAN---NMLYTWIQAARILDF- 179 (309)
T ss_dssp HHHHHHHHHTCSSC---EEEEEC---SSCCHHHHHHHHHHHHHHHS-CCTTCEEEEESCCC---HHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHhCCCC---EEECCC---CccCcHHHHHHHHHHHHHhC-CCCCCEEEEECCCc---chHHHHHHHHHHcCC-
Confidence 45667788899997 666642 234554 1222 23468999999952 345555655555554
Q ss_pred cCCceEEEEeecccccCCC-CCC-----CchhhcchhhhhcCCCEEEE
Q psy17159 75 SNRHLQLKYFDSELLSMDP-KTG-----NMAEYHKTWSDFCKVDGIIV 116 (326)
Q Consensus 75 ~~~~v~~~~i~~~~l~~~~-~~~-----~~~~~~~~~~~l~~~dglil 116 (326)
++..+.+..+.... +.. .-..+++..+.++++|.|..
T Consensus 180 -----~v~~~~P~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvyt 222 (309)
T 4f2g_A 180 -----KLQLSTPPGYALDAKLVDAESAPFYQVFDDPNEACKGADLVTT 222 (309)
T ss_dssp -----EEEEECCGGGCCCGGGSCGGGGGGEEECSSHHHHTTTCSEEEE
T ss_pred -----EEEEECCcccCCCHHHHHHHcCCeEEEEcCHHHHhcCCCEEEe
Confidence 33444444443211 000 00012233456678888776
No 155
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=41.89 E-value=11 Score=31.28 Aligned_cols=27 Identities=19% Similarity=0.111 Sum_probs=18.0
Q ss_pred CCCEEEECCCCCCCCCchHHHHHHHHH
Q psy17159 110 KVDGIIVPGGFGKRGLEGKIAACKWAR 136 (326)
Q Consensus 110 ~~dglilpGG~~~~~~~~~~~~i~~~~ 136 (326)
.+|.||.+||-|.....-..+++..+.
T Consensus 68 ~~DlVittGG~g~g~~D~t~ea~~~~~ 94 (178)
T 2pbq_A 68 GCSLILTTGGTGPAPRDVTPEATEAVC 94 (178)
T ss_dssp CCSEEEEESCCSSSTTCCHHHHHHHHC
T ss_pred CCCEEEECCCCCCCCCCchHHHHHHHh
Confidence 699999999876544444455555543
No 156
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=41.71 E-value=39 Score=26.84 Aligned_cols=53 Identities=15% Similarity=0.159 Sum_probs=33.4
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPG 118 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpG 118 (326)
+||.|+ |++..||-..+.+.|....... .+++..+... + .+.+.++|.|||.-
T Consensus 2 mkilIi--Y~S~tGnT~~vA~~ia~~l~~~--~v~~~~~~~~---------~-------~~~l~~~d~ii~g~ 54 (169)
T 1obo_A 2 KKIGLF--YGTQTGKTESVAEIIRDEFGND--VVTLHDVSQA---------E-------VTDLNDYQYLIIGC 54 (169)
T ss_dssp CSEEEE--ECCSSSHHHHHHHHHHHHHCTT--TEEEEETTTC---------C-------GGGGGGCSEEEEEE
T ss_pred CeEEEE--EECCCchHHHHHHHHHHHhCcC--CcEEEEcccC---------C-------HHHHhhCCEEEEEE
Confidence 468877 7777899888988887654321 3333333211 0 12577899998854
No 157
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=41.31 E-value=95 Score=28.58 Aligned_cols=59 Identities=14% Similarity=0.055 Sum_probs=36.9
Q ss_pred HHHHHHHhhcCCCCCCCeeeCCCCCcccccch----------hhhhcCCCceEEEEEcccCCCchhHHHHHHHHHHHhh
Q psy17159 5 ESVRAKISMFCHVTPENVIFNPDVKPIYKVRM----------LRIDRLNKTVTIGLVGKYTKFEDCYASLTRALEHASY 73 (326)
Q Consensus 5 ~~~~~ki~~~~~~~~~~v~~~~~~~~~y~~p~----------~~~~~~~~~~~I~iigdyg~~~~~~~Si~~aL~~~g~ 73 (326)
....+.+|.+++|| |||.-|- .+-|. +.+.. -+++||++|||-+ ..-+|.+.++...|.
T Consensus 136 ~~~~~~lA~~~~vP---VINag~~---~~HPtQaLaDl~TI~E~~G~-l~glkva~vGD~~---nva~Sl~~~~~~~G~ 204 (340)
T 4ep1_A 136 HADVEELAKESSIP---VINGLTD---DHHPCQALADLMTIYEETNT-FKGIKLAYVGDGN---NVCHSLLLASAKVGM 204 (340)
T ss_dssp HHHHHHHHHHCSSC---EEEEECS---SCCHHHHHHHHHHHHHHHSC-CTTCEEEEESCCC---HHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHhCCCC---EEeCCCC---CCCcHHHHHHHHHHHHHhCC-CCCCEEEEECCCc---hhHHHHHHHHHHcCC
Confidence 35567788899997 7777652 36665 12222 3568999999952 345556655555554
No 158
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=41.28 E-value=83 Score=27.08 Aligned_cols=86 Identities=16% Similarity=0.140 Sum_probs=46.0
Q ss_pred CCceEEEEEc------ccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEE
Q psy17159 43 NKTVTIGLVG------KYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGI 114 (326)
Q Consensus 43 ~~~~~I~iig------dyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dgl 114 (326)
+++.+||+|= +... .-+..+.+.++....+.+..+.+..... ++..-.+..+.+ ..+|||
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~--~f~~~~~~gi~~~a~~~g~~~~~~~~~~----------~~~~~~~~~~~l~~~~vdGi 72 (295)
T 3hcw_A 5 NQTYKIGLVLKGSEEPIRLN--PFYINVLLGISETCNQHGYGTQTTVSNN----------MNDLMDEVYKMIKQRMVDAF 72 (295)
T ss_dssp CCSCEEEEECSCCCHHHHSC--HHHHHHHHHHHHHHHTTTCEEEECCCCS----------HHHHHHHHHHHHHTTCCSEE
T ss_pred CCCcEEEEEeecCCcccccC--hHHHHHHHHHHHHHHHCCCEEEEEcCCC----------ChHHHHHHHHHHHhCCcCEE
Confidence 3456899881 1111 2356688888888776665544332221 111001112233 479999
Q ss_pred EECCCCCCCCCchHHHHHHHHHHcCCCEEEEe
Q psy17159 115 IVPGGFGKRGLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 115 ilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
|+.+.... . ..++.+.+.++|+.-+.
T Consensus 73 I~~~~~~~---~---~~~~~l~~~~iPvV~i~ 98 (295)
T 3hcw_A 73 ILLYSKEN---D---PIKQMLIDESMPFIVIG 98 (295)
T ss_dssp EESCCCTT---C---HHHHHHHHTTCCEEEES
T ss_pred EEcCcccC---h---HHHHHHHhCCCCEEEEC
Confidence 99864321 1 23444556788886553
No 159
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=41.19 E-value=1.1e+02 Score=26.30 Aligned_cols=86 Identities=16% Similarity=0.117 Sum_probs=42.3
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKR 123 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~ 123 (326)
.+||++-.. .-..-+..+...++......+..+.+..... ++..-.+..+.+ ..+||||+.+....
T Consensus 3 ~~Ig~i~~~-~~~~~~~~~~~gi~~~a~~~g~~l~~~~~~~----------~~~~~~~~i~~l~~~~vdgiIi~~~~~~- 70 (306)
T 2vk2_A 3 LTVGFSQVG-SESGWRAAETNVAKSEAEKRGITLKIADGQQ----------KQENQIKAVRSFVAQGVDAIFIAPVVAT- 70 (306)
T ss_dssp CEEEEEECC-CCSHHHHHHHHHHHHHHHHHTCEEEEEECTT----------CHHHHHHHHHHHHHHTCSEEEECCSSSS-
T ss_pred eEEEEEeCC-CCCHHHHHHHHHHHHHHHHcCCEEEEeCCCC----------CHHHHHHHHHHHHHcCCCEEEEeCCChh-
Confidence 578888222 1112244566667666655554444332211 111111112222 47999999864321
Q ss_pred CCchHHHHHHHHHHcCCCEEEEe
Q psy17159 124 GLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 124 ~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
.. ...++.+.+.++|+.-+.
T Consensus 71 ~~---~~~~~~~~~~~iPvV~~~ 90 (306)
T 2vk2_A 71 GW---EPVLKEAKDAEIPVFLLD 90 (306)
T ss_dssp SC---HHHHHHHHHTTCCEEEES
T ss_pred hH---HHHHHHHHHCCCCEEEec
Confidence 11 234555556789987653
No 160
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=40.90 E-value=1.1e+02 Score=27.47 Aligned_cols=98 Identities=11% Similarity=0.013 Sum_probs=53.2
Q ss_pred HHHHHHHhhcCCCCCCCeeeCCCCCcccccch----------hhhhcCCCceEEEEEcccCCCchhHHHHHHHHHHHhhh
Q psy17159 5 ESVRAKISMFCHVTPENVIFNPDVKPIYKVRM----------LRIDRLNKTVTIGLVGKYTKFEDCYASLTRALEHASYH 74 (326)
Q Consensus 5 ~~~~~ki~~~~~~~~~~v~~~~~~~~~y~~p~----------~~~~~~~~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~ 74 (326)
....+.+|.+++|| |||.-| -.+-|. +.+. .-++++|+++||.+ ..-+|.+.++...|.
T Consensus 111 ~~~~~~la~~~~vP---VINa~~---~~~HPtQaLaDl~Ti~e~~g-~l~gl~ia~vGD~~---rva~Sl~~~~~~~g~- 179 (301)
T 2ef0_A 111 HETVEALARHAKVP---VVNALS---DRAHPLQALADLLTLKEVFG-GLAGLEVAWVGDGN---NVLNSLLEVAPLAGL- 179 (301)
T ss_dssp HHHHHHHHHHCSSC---EEEEEC---SSCCHHHHHHHHHHHHHHHS-CCTTCEEEEESCCC---HHHHHHHHHHHHHTC-
T ss_pred hHHHHHHHHHCCCC---EEeCCC---CccCchHHHHHHHHHHHHhC-CcCCcEEEEECCCc---hhHHHHHHHHHHcCC-
Confidence 45567788888886 566533 335564 2222 23468999999952 445666666666654
Q ss_pred cCCceEEEEeecccccCCC-CCC--CchhhcchhhhhcCCCEEEECC
Q psy17159 75 SNRHLQLKYFDSELLSMDP-KTG--NMAEYHKTWSDFCKVDGIIVPG 118 (326)
Q Consensus 75 ~~~~v~~~~i~~~~l~~~~-~~~--~~~~~~~~~~~l~~~dglilpG 118 (326)
++..+.+..+.... +.+ .-..+++..+.++++|.|..--
T Consensus 180 -----~v~~~~P~~~~~~~~~~~~~~~~~~~d~~eav~~aDvvy~~~ 221 (301)
T 2ef0_A 180 -----KVRVATPKGYEPDPGLLKRANAFFTHDPKEAALGAHALYTDV 221 (301)
T ss_dssp -----EEEEECCTTCCCCHHHHHHHTCEEESCHHHHHTTCSEEEECC
T ss_pred -----EEEEECCchhcCCHHHHhhceeEEECCHHHHhcCCCEEEecC
Confidence 34455555543311 000 0001222345678888777643
No 161
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=40.89 E-value=1.2e+02 Score=25.96 Aligned_cols=88 Identities=17% Similarity=0.212 Sum_probs=45.1
Q ss_pred CCceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCC
Q psy17159 43 NKTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGF 120 (326)
Q Consensus 43 ~~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~ 120 (326)
+++.+|+++ --.....-+..+...++.+..+.+..+.+..... ++..-.+..+.+ ..+||||+.+..
T Consensus 18 ~~~~~Ig~i-~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~----------~~~~~~~~~~~l~~~~vdgii~~~~~ 86 (293)
T 2iks_A 18 GRTRSIGLV-IPDLENTSYTRIANYLERQARQRGYQLLIACSED----------QPDNEMRCIEHLLQRQVDAIIVSTSL 86 (293)
T ss_dssp CCCCEEEEE-ESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECTT----------CHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred CCCcEEEEE-eCCCcCcHHHHHHHHHHHHHHHCCCEEEEEcCCC----------CHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 345678888 2211113456688888877776665554432211 111111112222 479999998753
Q ss_pred CCCCCchHHHHHHHHHHcCCCEEEEe
Q psy17159 121 GKRGLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 121 ~~~~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
... . ..++.+.+.++|+.-+.
T Consensus 87 ~~~--~---~~~~~~~~~~iPvV~~~ 107 (293)
T 2iks_A 87 PPE--H---PFYQRWANDPFPIVALD 107 (293)
T ss_dssp CTT--C---HHHHTTTTSSSCEEEEE
T ss_pred CCc--H---HHHHHHHhCCCCEEEEC
Confidence 211 1 23344445678876554
No 162
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=40.63 E-value=1.2e+02 Score=26.99 Aligned_cols=85 Identities=11% Similarity=0.106 Sum_probs=45.7
Q ss_pred CceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCC
Q psy17159 44 KTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFG 121 (326)
Q Consensus 44 ~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~ 121 (326)
++..||++ --.....-|..+...++......+..+.+...+. ++..-.+..+.+ ..+||||+.+...
T Consensus 69 ~~~~Igvi-~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~----------~~~~~~~~~~~l~~~~vdGiI~~~~~~ 137 (355)
T 3e3m_A 69 RSGFVGLL-LPSLNNLHFAQTAQSLTDVLEQGGLQLLLGYTAY----------SPEREEQLVETMLRRRPEAMVLSYDGH 137 (355)
T ss_dssp --CEEEEE-ESCSBCHHHHHHHHHHHHHHHHTTCEEEEEECTT----------CHHHHHHHHHHHHHTCCSEEEEECSCC
T ss_pred CCCEEEEE-eCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCC----------ChHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 34578887 2211113466688888887777666655443321 111101112222 4799999986432
Q ss_pred CCCCchHHHHHHHHHHcCCCEEEE
Q psy17159 122 KRGLEGKIAACKWARENNKPFLGI 145 (326)
Q Consensus 122 ~~~~~~~~~~i~~~~~~~~PvLGI 145 (326)
. ...++.+.+.++|+.-+
T Consensus 138 ~------~~~~~~l~~~~iPvV~i 155 (355)
T 3e3m_A 138 T------EQTIRLLQRASIPIVEI 155 (355)
T ss_dssp C------HHHHHHHHHCCSCEEEE
T ss_pred C------HHHHHHHHhCCCCEEEE
Confidence 1 13455566779998876
No 163
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=40.59 E-value=94 Score=27.26 Aligned_cols=88 Identities=5% Similarity=-0.121 Sum_probs=45.3
Q ss_pred CceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cC--CCEEEECCC
Q psy17159 44 KTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CK--VDGIIVPGG 119 (326)
Q Consensus 44 ~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~--~dglilpGG 119 (326)
++.+||++ --.....-+..+...++.+..+.+..+.+..... ++..-.+..+.+ .. +||||+.+.
T Consensus 4 ~s~~Igvi-~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~~~----------~~~~~~~~i~~l~~~~~~vdgiIi~~~ 72 (332)
T 2rjo_A 4 GQTTLACS-FRSLTNPYYTAFNKGAQSFAKSVGLPYVPLTTEG----------SSEKGIADIRALLQKTGGNLVLNVDPN 72 (332)
T ss_dssp CCCEEEEE-ESCTTSHHHHHHHHHHHHHHHHHTCCEEEEECTT----------CHHHHHHHHHHHHHHTTTCEEEEECCS
T ss_pred CccEEEEE-ecCCCcHHHHHHHHHHHHHHHHcCCEEEEecCCC----------CHHHHHHHHHHHHHCCCCCCEEEEeCC
Confidence 34578888 2111113355677777777666555544432211 111100111222 36 999999764
Q ss_pred CCCCCCchHHHHHHHHHHcCCCEEEEe
Q psy17159 120 FGKRGLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 120 ~~~~~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
.. ......++.+.+.++|+.-+.
T Consensus 73 ~~----~~~~~~~~~~~~~~iPvV~~~ 95 (332)
T 2rjo_A 73 DS----ADARVIVEACSKAGAYVTTIW 95 (332)
T ss_dssp SH----HHHHHHHHHHHHHTCEEEEES
T ss_pred CH----HHHHHHHHHHHHCCCeEEEEC
Confidence 21 122245666666789987664
No 164
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=40.52 E-value=19 Score=30.40 Aligned_cols=45 Identities=9% Similarity=-0.019 Sum_probs=36.2
Q ss_pred hhhhhcCCCEEEECCCCCCCCCchHHHHHHHHH-HcCCCEEEEehh
Q psy17159 104 TWSDFCKVDGIIVPGGFGKRGLEGKIAACKWAR-ENNKPFLGICLG 148 (326)
Q Consensus 104 ~~~~l~~~dglilpGG~~~~~~~~~~~~i~~~~-~~~~PvLGIClG 148 (326)
+.+.|..++.+|+--|..+.........|+.++ +.++||.||=.+
T Consensus 73 LReRI~~Sk~vIllIs~~T~~s~~v~wEIe~Ai~~~~~PII~Vy~~ 118 (189)
T 3hyn_A 73 LHTRLDNSKNIILFLSSITANSRALREEMNYGIGTKGLPVIVIYPD 118 (189)
T ss_dssp HHHHHHTEEEEEEECCTTCCCCHHHHHHHHHHTTTTCCCEEEEETT
T ss_pred HHHHHHhcCcEEEEEecCccccchhHHHHHHHHHhcCCcEEEEECC
Confidence 445677899998888877766667777889999 889999999766
No 165
>1o7j_A L-asparaginase; atomic resolution, hydrolase; 1.0A {Erwinia chrysanthemi} SCOP: c.88.1.1 PDB: 1hfj_A 1hfk_A* 1hg0_A 1hg1_A 1hfw_A* 1jsr_A* 1jsl_A 2gvn_A 1zcf_A 2hln_A* 2jk0_A
Probab=40.40 E-value=25 Score=32.22 Aligned_cols=35 Identities=29% Similarity=0.330 Sum_probs=28.0
Q ss_pred CCCEEEECC-CCCCCCCchHHHHHHHHHHcCCCEEEE
Q psy17159 110 KVDGIIVPG-GFGKRGLEGKIAACKWARENNKPFLGI 145 (326)
Q Consensus 110 ~~dglilpG-G~~~~~~~~~~~~i~~~~~~~~PvLGI 145 (326)
.++||||-| |.|+-. ..+.+.|+++.++++||.=+
T Consensus 241 g~~GiVle~~G~Gn~p-~~~~~~l~~a~~~Gi~VV~~ 276 (327)
T 1o7j_A 241 GVKGIVYAGMGAGSVS-VRGIAGMRKALEKGVVVMRS 276 (327)
T ss_dssp TCSEEEEEEBTTTBCC-HHHHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEEeeECCCCCC-HHHHHHHHHHHHCCceEEEE
Confidence 589999999 877644 56778899999999997643
No 166
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=40.22 E-value=1e+02 Score=26.20 Aligned_cols=87 Identities=17% Similarity=0.177 Sum_probs=44.0
Q ss_pred CceEEEEEccc-CCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCC
Q psy17159 44 KTVTIGLVGKY-TKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGF 120 (326)
Q Consensus 44 ~~~~I~iigdy-g~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~ 120 (326)
++.+||++-.. +....-+..+...++.+....+..+.+. +.. .++....+..+.+ ..+||||+.+..
T Consensus 18 ~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~--~~~--------~~~~~~~~~~~~l~~~~vdgii~~~~~ 87 (296)
T 3brq_A 18 STQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLA--DGK--------HSAEEERQAIQYLLDLRCDAIMIYPRF 87 (296)
T ss_dssp -CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEE--CCT--------TSHHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred CCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEE--eCC--------CCHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 34678888211 0111235667777777766655544432 211 1111111112223 479999997642
Q ss_pred CCCCCchHHHHHHHHHH-cCCCEEEEe
Q psy17159 121 GKRGLEGKIAACKWARE-NNKPFLGIC 146 (326)
Q Consensus 121 ~~~~~~~~~~~i~~~~~-~~~PvLGIC 146 (326)
.. . ..++.+.+ .++|+.-+.
T Consensus 88 ~~---~---~~~~~l~~~~~iPvV~~~ 108 (296)
T 3brq_A 88 LS---V---DEIDDIIDAHSQPIMVLN 108 (296)
T ss_dssp SC---H---HHHHHHHHTCSSCEEEES
T ss_pred CC---h---HHHHHHHhcCCCCEEEEc
Confidence 21 1 33455556 789987664
No 167
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=39.49 E-value=1.9e+02 Score=25.19 Aligned_cols=86 Identities=21% Similarity=0.300 Sum_probs=45.1
Q ss_pred CceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCC
Q psy17159 44 KTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFG 121 (326)
Q Consensus 44 ~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~ 121 (326)
++.+||++ --.....-+..+...++......+..+.+..... ++..-.+..+.+ ..+||||+.+...
T Consensus 62 ~~~~Ig~i-~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~----------~~~~~~~~~~~l~~~~vdgiI~~~~~~ 130 (332)
T 2o20_A 62 RTTTVGVI-LPTITSTYFAAITRGVDDIASMYKYNMILANSDN----------DVEKEEKVLETFLSKQVDGIVYMGSSL 130 (332)
T ss_dssp CCCEEEEE-ESCTTCHHHHHHHHHHHHHHHHTTCEEEEEECTT----------CHHHHHHHHHHHHHTTCSEEEECSSCC
T ss_pred CCCEEEEE-eCCCCCcHHHHHHHHHHHHHHHcCCEEEEEECCC----------ChHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 34678888 2111113456688888877766665554432221 111111112223 4799999987422
Q ss_pred CCCCchHHHHHHHHHHcCCCEEEEe
Q psy17159 122 KRGLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 122 ~~~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
. . ..++.+.+.++|+.-+.
T Consensus 131 ~---~---~~~~~l~~~~iPvV~~~ 149 (332)
T 2o20_A 131 D---E---KIRTSLKNSRTPVVLVG 149 (332)
T ss_dssp C---H---HHHHHHHHHCCCEEEES
T ss_pred C---H---HHHHHHHhCCCCEEEEc
Confidence 1 1 23444445689987664
No 168
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=39.47 E-value=15 Score=30.01 Aligned_cols=26 Identities=23% Similarity=0.211 Sum_probs=17.5
Q ss_pred CCCEEEECCCCCCCCCchHHHHHHHH
Q psy17159 110 KVDGIIVPGGFGKRGLEGKIAACKWA 135 (326)
Q Consensus 110 ~~dglilpGG~~~~~~~~~~~~i~~~ 135 (326)
.+|.||.+||-|.....-..+++..+
T Consensus 62 ~~DlVittGG~g~g~~D~t~ea~~~~ 87 (164)
T 2is8_A 62 GLDLILTNGGTGLAPRDRTPEATREL 87 (164)
T ss_dssp CCSEEEEESCCSSSTTCCHHHHHHTT
T ss_pred CCCEEEEcCCCCCCCCCChHHHHHHH
Confidence 69999999987654444445555544
No 169
>3nxk_A Cytoplasmic L-asparaginase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; 2.40A {Campylobacter jejuni subsp}
Probab=39.44 E-value=37 Score=31.19 Aligned_cols=35 Identities=20% Similarity=0.211 Sum_probs=28.0
Q ss_pred CCCEEEECC-CCCCCCCchHHHHHHHHHHcCCCEEEE
Q psy17159 110 KVDGIIVPG-GFGKRGLEGKIAACKWARENNKPFLGI 145 (326)
Q Consensus 110 ~~dglilpG-G~~~~~~~~~~~~i~~~~~~~~PvLGI 145 (326)
.++||||-| |.|+-. ..+.+.|+++.++++||.=+
T Consensus 245 g~~GiVle~~G~Gn~p-~~~~~~l~~a~~~Gi~VV~~ 280 (334)
T 3nxk_A 245 GTKGIVVAGSGAGSIH-KNQKDVLKELLKKGLKVVVS 280 (334)
T ss_dssp TCCEEEEEEBTTTBCC-HHHHHHHHHHHTTTCEEEEE
T ss_pred CCCEEEEeeECCCCCc-HHHHHHHHHHHHCCCEEEEe
Confidence 579999998 777644 46788899999999998755
No 170
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=39.38 E-value=1.6e+02 Score=24.91 Aligned_cols=86 Identities=10% Similarity=-0.047 Sum_probs=45.3
Q ss_pred CceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCC
Q psy17159 44 KTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFG 121 (326)
Q Consensus 44 ~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~ 121 (326)
++.+||++=.-.....-+..+...++++..+.+..+.+...+...-... +..+.+ ..+||||+.+...
T Consensus 10 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~----------~~~~~l~~~~vdgiIi~~~~~ 79 (289)
T 3g85_A 10 SKPTIALYWSSDISVNIISRFLRGLQSKLAKQNYNYNVVICPYKTDCLH----------LEKGISKENSFDAAIIANISN 79 (289)
T ss_dssp -CCEEEEEEETTSCGGGHHHHHHHHHHHHHHTTTCSEEEEEEECTTCGG----------GCGGGSTTTCCSEEEESSCCH
T ss_pred CCceEEEEeccccchHHHHHHHHHHHHHHHHcCCeEEEEecCCCchhHH----------HHHHHHhccCCCEEEEecCCc
Confidence 3467888821011113467788888888777777766654442110000 011223 4799999986421
Q ss_pred CCCCchHHHHHHHHHHcCCCEEEE
Q psy17159 122 KRGLEGKIAACKWARENNKPFLGI 145 (326)
Q Consensus 122 ~~~~~~~~~~i~~~~~~~~PvLGI 145 (326)
.. ..+....+.++|+.-+
T Consensus 80 -----~~-~~~~~~~~~~iPvV~~ 97 (289)
T 3g85_A 80 -----YD-LEYLNKASLTLPIILF 97 (289)
T ss_dssp -----HH-HHHHHHCCCSSCEEEE
T ss_pred -----cc-HHHHHhccCCCCEEEE
Confidence 11 2222233567888765
No 171
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=39.21 E-value=1.2e+02 Score=26.68 Aligned_cols=85 Identities=8% Similarity=0.100 Sum_probs=43.8
Q ss_pred CceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCC
Q psy17159 44 KTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFG 121 (326)
Q Consensus 44 ~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~ 121 (326)
++.+||++ --.....-+..+...++....+.+..+.+...+. ++..-.+..+.+ ..+||||+.+...
T Consensus 61 ~~~~Igvi-~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~----------~~~~~~~~~~~l~~~~vdGiIi~~~~~ 129 (339)
T 3h5o_A 61 KSRTVLVL-IPSLANTVFLETLTGIETVLDAAGYQMLIGNSHY----------DAGQELQLLRAYLQHRPDGVLITGLSH 129 (339)
T ss_dssp --CEEEEE-ESCSTTCTTHHHHHHHHHHHHHTTCEEEEEECTT----------CHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred CCCEEEEE-eCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCC----------ChHHHHHHHHHHHcCCCCEEEEeCCCC
Confidence 34578887 2111112356677778777776665555433321 111111112222 4799999987432
Q ss_pred CCCCchHHHHHHHHHHcCCCEEEE
Q psy17159 122 KRGLEGKIAACKWARENNKPFLGI 145 (326)
Q Consensus 122 ~~~~~~~~~~i~~~~~~~~PvLGI 145 (326)
.. ..++.+.+.++|+.-+
T Consensus 130 ~~------~~~~~l~~~~iPvV~~ 147 (339)
T 3h5o_A 130 AE------PFERILSQHALPVVYM 147 (339)
T ss_dssp CT------THHHHHHHTTCCEEEE
T ss_pred CH------HHHHHHhcCCCCEEEE
Confidence 11 2334445678998766
No 172
>2wlt_A L-asparaginase; hydrolase; 1.40A {Helicobacter pylori} PDB: 2wt4_A
Probab=38.82 E-value=27 Score=32.03 Aligned_cols=35 Identities=20% Similarity=0.347 Sum_probs=27.9
Q ss_pred CCCEEEECC-CCCCCCCchHHHHHHHHHHcCCCEEEE
Q psy17159 110 KVDGIIVPG-GFGKRGLEGKIAACKWARENNKPFLGI 145 (326)
Q Consensus 110 ~~dglilpG-G~~~~~~~~~~~~i~~~~~~~~PvLGI 145 (326)
.++||||-| |.|+-. ..+.+.|+++.++++||.=+
T Consensus 242 g~~GiVle~~G~Gn~p-~~~~~~l~~a~~~Gi~VV~~ 277 (332)
T 2wlt_A 242 HAKGVVIAGVGNGNVS-AGFLKAMQEASQMGVVIVRS 277 (332)
T ss_dssp TCSEEEEEEBTTTBCC-HHHHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEEeeECCCCCC-HHHHHHHHHHHHCCCEEEEE
Confidence 589999998 777644 46778899999999997644
No 173
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=38.79 E-value=1.8e+02 Score=24.63 Aligned_cols=85 Identities=14% Similarity=0.148 Sum_probs=44.3
Q ss_pred CceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCC
Q psy17159 44 KTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFG 121 (326)
Q Consensus 44 ~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~ 121 (326)
++.+||++ --.....-+..+.+.++.+..+.+..+.+..... ++..-.+..+.+ ..+||||+.+...
T Consensus 7 ~~~~Igvi-~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~----------~~~~~~~~~~~l~~~~vdgiI~~~~~~ 75 (285)
T 3c3k_A 7 KTGMLLVM-VSNIANPFCAAVVKGIEKTAEKNGYRILLCNTES----------DLARSRSCLTLLSGKMVDGVITMDALS 75 (285)
T ss_dssp CCCEEEEE-ESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTT----------CHHHHHHHTHHHHTTCCSEEEECCCGG
T ss_pred CCCEEEEE-eCCCCCchHHHHHHHHHHHHHHcCCEEEEEeCCC----------CHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 44678888 2111113456678888877766665544432211 111101112222 4799999986421
Q ss_pred CCCCchHHHHHHHHHHcCCCEEEEe
Q psy17159 122 KRGLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 122 ~~~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
. . ..++.+. .++|+.-+.
T Consensus 76 ~---~---~~~~~l~-~~iPvV~~~ 93 (285)
T 3c3k_A 76 E---L---PELQNII-GAFPWVQCA 93 (285)
T ss_dssp G---H---HHHHHHH-TTSSEEEES
T ss_pred C---h---HHHHHHh-cCCCEEEEc
Confidence 1 1 2344445 789987764
No 174
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=38.17 E-value=43 Score=25.90 Aligned_cols=36 Identities=17% Similarity=0.009 Sum_probs=25.5
Q ss_pred CCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEehhHHH
Q psy17159 110 KVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGLQA 151 (326)
Q Consensus 110 ~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIClG~Ql 151 (326)
.+.++|+..|+. ..++.+.+.+.++.++|=|+|+++
T Consensus 82 g~k~v~~~~G~~------~~e~~~~a~~~Girvv~nC~gv~l 117 (122)
T 3ff4_A 82 KPKRVIFNPGTE------NEELEEILSENGIEPVIGCTLVML 117 (122)
T ss_dssp CCSEEEECTTCC------CHHHHHHHHHTTCEEEESCHHHHH
T ss_pred CCCEEEECCCCC------hHHHHHHHHHcCCeEECCcCeEEe
Confidence 445677766652 135666777889999999999875
No 175
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=37.30 E-value=67 Score=27.36 Aligned_cols=89 Identities=13% Similarity=0.052 Sum_probs=43.5
Q ss_pred ceEEEEEcccCCC--chhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCC
Q psy17159 45 TVTIGLVGKYTKF--EDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGF 120 (326)
Q Consensus 45 ~~~I~iigdyg~~--~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~ 120 (326)
+.+||++-. ... ..-+..+.+.++.+..+.+..+.+...+.. .++..-.+..+.+ ..+||||+.+..
T Consensus 5 ~~~Ig~v~~-~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~vdgii~~~~~ 75 (289)
T 3brs_A 5 QYYMICIPK-VLDDSSDFWSVLVEGAQMAAKEYEIKLEFMAPEKE--------EDYLVQNELIEEAIKRKPDVILLAAAD 75 (289)
T ss_dssp CCEEEEECS-CCCSSSHHHHHHHHHHHHHHHHHTCEEEECCCSST--------TCHHHHHHHHHHHHHTCCSEEEECCSC
T ss_pred CcEEEEEeC-CCCCCchHHHHHHHHHHHHHHHcCCEEEEecCCCC--------CCHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 457888822 111 134556777777776655544433222100 0111111112222 479999998743
Q ss_pred CCCCCchHHHHHHHHHHcCCCEEEEe
Q psy17159 121 GKRGLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 121 ~~~~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
.. .....++.+.+.++|+.-+.
T Consensus 76 ~~----~~~~~~~~~~~~~iPvV~~~ 97 (289)
T 3brs_A 76 YE----KTYDAAKEIKDAGIKLIVID 97 (289)
T ss_dssp TT----TTHHHHTTTGGGTCEEEEES
T ss_pred hH----HhHHHHHHHHHCCCcEEEEC
Confidence 21 11234444545688877653
No 176
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=36.69 E-value=1.2e+02 Score=27.60 Aligned_cols=98 Identities=6% Similarity=-0.012 Sum_probs=51.5
Q ss_pred HHHHHHhhcCCCCCCCeeeCCCCCcccccc--hhh---hhcCCCceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceE
Q psy17159 6 SVRAKISMFCHVTPENVIFNPDVKPIYKVR--MLR---IDRLNKTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQ 80 (326)
Q Consensus 6 ~~~~ki~~~~~~~~~~v~~~~~~~~~y~~p--~~~---~~~~~~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~ 80 (326)
++++|+... +++...|+..+....--.+. ++. |......++|.|+ |++..||-..+.+++.+.....+..++
T Consensus 208 ~~l~~l~~~-~l~~~~i~p~Hg~~~~~~~~~~l~~~~~~~~~~~~~~i~i~--y~S~~GnT~~lA~~ia~~l~~~g~~v~ 284 (398)
T 1ycg_A 208 KKLDEIQKI-NLAIKTIAPSHGIIWRKDPGRIIEAYARWAEGQGKAKAVIA--YDTMWLSTEKMAHALMDGLVAGGCEVK 284 (398)
T ss_dssp HHHHHHHHT-TCCCSEEEESSSCBBCSCHHHHHHHHHHHHHTCCCSEEEEE--ECCSSSHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHhhC-CCCccEEECCCchhhhCCHHHHHHHHHHHhccCCcCeEEEE--EECCccHHHHHHHHHHHHHHhcCCeEE
Confidence 456666641 13456666665422110000 122 2222224678877 667789988888888765443344444
Q ss_pred EEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECC
Q psy17159 81 LKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPG 118 (326)
Q Consensus 81 ~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpG 118 (326)
+..+.... . .+..+.+.++|+|||.-
T Consensus 285 ~~~~~~~~---------~---~~~~~~~~~~d~ii~g~ 310 (398)
T 1ycg_A 285 LFKLSVSD---------R---NDVIKEILDARAVLVGS 310 (398)
T ss_dssp EEEGGGSC---------H---HHHHHHHHHCSEEEEEC
T ss_pred EEECCCCC---------H---HHHHHHHHHCCEEEEEC
Confidence 44333211 0 11233567899999864
No 177
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=35.93 E-value=73 Score=28.87 Aligned_cols=59 Identities=7% Similarity=0.039 Sum_probs=36.4
Q ss_pred HHHHHHHhhcCCCCCCCeeeCCCCCcccccch----------hhhhcCCC-ceEEEEEcccCCCchhHHHHHHHHHHHhh
Q psy17159 5 ESVRAKISMFCHVTPENVIFNPDVKPIYKVRM----------LRIDRLNK-TVTIGLVGKYTKFEDCYASLTRALEHASY 73 (326)
Q Consensus 5 ~~~~~ki~~~~~~~~~~v~~~~~~~~~y~~p~----------~~~~~~~~-~~~I~iigdyg~~~~~~~Si~~aL~~~g~ 73 (326)
....+.+|.+++|| |||.-|- .+.|. +.+.. -+ ++||+++||.+ ..-+|...++...|.
T Consensus 102 ~~~~~~lA~~~~vP---VINag~~---~~HPtQaLaDl~Ti~e~~g~-l~~gl~va~vGD~~---~va~Sl~~~~~~~G~ 171 (307)
T 3tpf_A 102 HETLLEFARYSKAP---VINALSE---LYHPTQVLGDLFTIKEWNKM-QNGIAKVAFIGDSN---NMCNSWLITAAILGF 171 (307)
T ss_dssp HHHHHHHHHHCSSC---EEEEECS---SCCHHHHHHHHHHHHHTTCC-GGGCCEEEEESCSS---HHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHhCCCC---EEeCCCC---CcCcHHHHHHHHHHHHHhCC-CCCCCEEEEEcCCC---ccHHHHHHHHHHcCC
Confidence 45667788899997 7777652 45665 11111 23 68999999953 345555555555543
No 178
>2d6f_A Glutamyl-tRNA(Gln) amidotransferase subunit D; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.38.3.1 c.88.1.1
Probab=35.72 E-value=41 Score=32.14 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=28.1
Q ss_pred CCCEEEECC-CCCCCCCchHHHHHHHHHHcCCCEEEE
Q psy17159 110 KVDGIIVPG-GFGKRGLEGKIAACKWARENNKPFLGI 145 (326)
Q Consensus 110 ~~dglilpG-G~~~~~~~~~~~~i~~~~~~~~PvLGI 145 (326)
.++||||-| |.|+-. ..+.+.|+++.++++||.=+
T Consensus 325 g~~GiVleg~G~Gn~p-~~~~~~l~~a~~~Gi~VV~~ 360 (435)
T 2d6f_A 325 GYRGIVIEGTGLGHCP-DTLIPVIGEAHDMGVPVAMT 360 (435)
T ss_dssp TCSEEEEEEBTTTBCC-GGGHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEEecCCCCCcC-HHHHHHHHHHHhCCCEEEEe
Confidence 579999999 877644 56778899999999998644
No 179
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=35.34 E-value=96 Score=27.21 Aligned_cols=87 Identities=23% Similarity=0.253 Sum_probs=44.3
Q ss_pred CCceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCC
Q psy17159 43 NKTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGF 120 (326)
Q Consensus 43 ~~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~ 120 (326)
.++.+||++ --.....-+..+...++......+..+.+..... ++..-.+..+.+ ..+||||+.+..
T Consensus 58 ~~~~~Ig~i-~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~----------~~~~~~~~~~~l~~~~vdgiI~~~~~ 126 (332)
T 2hsg_A 58 KKTTTVGVI-IPDISNIFYAELARGIEDIATMYKYNIILSNSDQ----------NQDKELHLLNNMLGKQVDGIIFMSGN 126 (332)
T ss_dssp C-CCEEEEE-EC--CCSHHHHHHHHHHHHHHHHTCEEEEEECCS----------HHHHHHHHHHHTSCCSSCCEEECCSS
T ss_pred CCCCEEEEE-eCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeCCC----------ChHHHHHHHHHHHhCCCcEEEEecCC
Confidence 345689888 2111113356677777777666555554433221 111101112223 479999998743
Q ss_pred CCCCCchHHHHHHHHHHcCCCEEEEe
Q psy17159 121 GKRGLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 121 ~~~~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
.. . ..++.+.+.++|+.-+.
T Consensus 127 ~~---~---~~~~~l~~~~iPvV~~~ 146 (332)
T 2hsg_A 127 VT---E---EHVEELKKSPVPVVLAA 146 (332)
T ss_dssp CC---H---HHHHHHTTSSSCEEEES
T ss_pred CC---H---HHHHHHHhCCCCEEEEc
Confidence 21 1 34444545688887664
No 180
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=35.02 E-value=44 Score=25.95 Aligned_cols=33 Identities=9% Similarity=-0.036 Sum_probs=22.4
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceE
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQ 80 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~ 80 (326)
++|.|+ |++..||-..+.+.|.......+.++.
T Consensus 2 ~ki~I~--Y~S~tGnT~~~A~~ia~~l~~~g~~v~ 34 (147)
T 2hna_A 2 ADITLI--SGSTLGGAEYVAEHLAEKLEEAGFTTE 34 (147)
T ss_dssp CSEEEE--CCTTSCCCHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEE--EECCchHHHHHHHHHHHHHHHCCCceE
Confidence 357777 778889988888888775544333433
No 181
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=34.90 E-value=84 Score=26.94 Aligned_cols=83 Identities=11% Similarity=0.037 Sum_probs=45.9
Q ss_pred CceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCC
Q psy17159 44 KTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFG 121 (326)
Q Consensus 44 ~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~ 121 (326)
++.+||++ - .....-+..+.+.++....+.+..+.+.......- + . +..+.+ ..+||||+.+...
T Consensus 11 ~~~~Igvi-~-~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~-~------~----~~~~~l~~~~vdgiIi~~~~~ 77 (289)
T 3k9c_A 11 SSRLLGVV-F-ELQQPFHGDLVEQIYAAATRRGYDVMLSAVAPSRA-E------K----VAVQALMRERCEAAILLGTRF 77 (289)
T ss_dssp --CEEEEE-E-ETTCHHHHHHHHHHHHHHHHTTCEEEEEEEBTTBC-H------H----HHHHHHTTTTEEEEEEETCCC
T ss_pred CCCEEEEE-E-ecCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHH-H------H----HHHHHHHhCCCCEEEEECCCC
Confidence 34578888 3 22123466688888888877776666655442110 0 0 012223 4789999987532
Q ss_pred CCCCchHHHHHHHHHHcCCCEEEEe
Q psy17159 122 KRGLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 122 ~~~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
. . ..++.+.+ ++|+.-+.
T Consensus 78 ~---~---~~~~~~~~-~iPvV~i~ 95 (289)
T 3k9c_A 78 D---T---DELGALAD-RVPALVVA 95 (289)
T ss_dssp C---H---HHHHHHHT-TSCEEEES
T ss_pred C---H---HHHHHHHc-CCCEEEEc
Confidence 1 1 34444444 88987664
No 182
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=34.34 E-value=2.1e+02 Score=24.13 Aligned_cols=84 Identities=23% Similarity=0.246 Sum_probs=41.3
Q ss_pred EEEEE-cccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCC
Q psy17159 47 TIGLV-GKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKR 123 (326)
Q Consensus 47 ~I~ii-gdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~ 123 (326)
+||++ -+... .-+..+.+.++......+..+.+ ..+.. ++..-.+..+.+ ..+||||+.+... .
T Consensus 3 ~Igvi~~~~~~--~f~~~~~~gi~~~~~~~g~~~~~--~~~~~--------~~~~~~~~i~~l~~~~vdgiIi~~~~~-~ 69 (283)
T 2ioy_A 3 TIGLVISTLNN--PFFVTLKNGAEEKAKELGYKIIV--EDSQN--------DSSKELSNVEDLIQQKVDVLLINPVDS-D 69 (283)
T ss_dssp EEEEEESCSSS--HHHHHHHHHHHHHHHHHTCEEEE--EECTT--------CHHHHHHHHHHHHHTTCSEEEECCSST-T
T ss_pred EEEEEecCCCC--HHHHHHHHHHHHHHHhcCcEEEE--ecCCC--------CHHHHHHHHHHHHHcCCCEEEEeCCch-h
Confidence 57776 12211 23556777777766655544433 22210 111000011122 4799999975321 1
Q ss_pred CCchHHHHHHHHHHcCCCEEEEe
Q psy17159 124 GLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 124 ~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
.....++.+.+.++|+.-+.
T Consensus 70 ---~~~~~~~~~~~~~iPvV~~~ 89 (283)
T 2ioy_A 70 ---AVVTAIKEANSKNIPVITID 89 (283)
T ss_dssp ---TTHHHHHHHHHTTCCEEEES
T ss_pred ---hhHHHHHHHHHCCCeEEEec
Confidence 11234555666789986553
No 183
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=34.34 E-value=1.4e+02 Score=27.23 Aligned_cols=59 Identities=10% Similarity=0.035 Sum_probs=37.0
Q ss_pred HHHHHHHhhcCCCCCCCeeeCCCCCcccccch----------hhhhcCCCceEEEEEcccCCCchhHHHHHHHHHHHhh
Q psy17159 5 ESVRAKISMFCHVTPENVIFNPDVKPIYKVRM----------LRIDRLNKTVTIGLVGKYTKFEDCYASLTRALEHASY 73 (326)
Q Consensus 5 ~~~~~ki~~~~~~~~~~v~~~~~~~~~y~~p~----------~~~~~~~~~~~I~iigdyg~~~~~~~Si~~aL~~~g~ 73 (326)
....+.+|.+++|| |||.-| -.+-|. +.+. .-+++||++|||-+ ..-+|.+.++...|.
T Consensus 114 ~~~~~~lA~~~~vP---VINag~---~~~HPtQaLaDl~Ti~e~~g-~l~glkva~vGD~~---rva~Sl~~~~~~~G~ 182 (323)
T 3gd5_A 114 QTELEEYAHYAGIP---VINALT---DHEHPCQVVADLLTIRENFG-RLAGLKLAYVGDGN---NVAHSLLLGCAKVGM 182 (323)
T ss_dssp HHHHHHHHHHHCSC---EEEEEC---SSCCHHHHHHHHHHHHHHHS-CCTTCEEEEESCCC---HHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHhCCCC---EEeCCC---CCCCcHHHHHHHHHHHHHhC-CCCCCEEEEECCCC---cHHHHHHHHHHHcCC
Confidence 35566788888886 677765 135554 1222 23468999999962 345666666665554
No 184
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=34.06 E-value=1.4e+02 Score=26.54 Aligned_cols=85 Identities=12% Similarity=0.136 Sum_probs=43.2
Q ss_pred ceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCC
Q psy17159 45 TVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGK 122 (326)
Q Consensus 45 ~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~ 122 (326)
+.+||++ --.....-+..+...++......+..+.+..... ++....+..+.+ ..+||||+.+....
T Consensus 66 s~~Igvi-~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~----------~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 134 (348)
T 3bil_A 66 SNTIGVI-VPSLINHYFAAMVTEIQSTASKAGLATIITNSNE----------DATTMSGSLEFLTSHGVDGIICVPNEEC 134 (348)
T ss_dssp --CEEEE-ESCSSSHHHHHHHHHHHHHHHHTTCCEEEEECTT----------CHHHHHHHHHHHHHTTCSCEEECCCGGG
T ss_pred CCEEEEE-eCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeCCC----------CHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 4568888 2111113355678888877766665555443221 111111112223 47999999864221
Q ss_pred CCCchHHHHHHHHHHcCCCEEEEe
Q psy17159 123 RGLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 123 ~~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
...++.+.+.++|+.-+.
T Consensus 135 ------~~~~~~l~~~~iPvV~i~ 152 (348)
T 3bil_A 135 ------ANQLEDLQKQGMPVVLVD 152 (348)
T ss_dssp ------HHHHHHHHHC-CCEEEES
T ss_pred ------hHHHHHHHhCCCCEEEEc
Confidence 134455556788987653
No 185
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=33.95 E-value=1.7e+02 Score=25.45 Aligned_cols=87 Identities=16% Similarity=0.055 Sum_probs=43.5
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKR 123 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~ 123 (326)
.+||++ -...-..-+..+...++.+..+.+.++. ...... .++..-.+..+.+ ..+||||+.+....
T Consensus 4 ~~Igvi-~~~~~~~~~~~~~~g~~~~~~~~g~~~~--~~~~~~-------~d~~~q~~~i~~li~~~vdgiii~~~~~~- 72 (316)
T 1tjy_A 4 ERIAFI-PKLVGVGFFTSGGNGAQEAGKALGIDVT--YDGPTE-------PSVSGQVQLVNNFVNQGYDAIIVSAVSPD- 72 (316)
T ss_dssp CEEEEE-CSSSSSHHHHHHHHHHHHHHHHHTCEEE--ECCCSS-------CCHHHHHHHHHHHHHTTCSEEEECCSSSS-
T ss_pred CEEEEE-eCCCCChHHHHHHHHHHHHHHHhCCEEE--EECCCC-------CCHHHHHHHHHHHHHcCCCEEEEeCCCHH-
Confidence 478888 2221112355577777776655554333 221100 1111111111222 47999999764221
Q ss_pred CCchHHHHHHHHHHcCCCEEEEe
Q psy17159 124 GLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 124 ~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
.....++.+.+.++|+.-+-
T Consensus 73 ---~~~~~~~~a~~~gipvV~~d 92 (316)
T 1tjy_A 73 ---GLCPALKRAMQRGVKILTWD 92 (316)
T ss_dssp ---TTHHHHHHHHHTTCEEEEES
T ss_pred ---HHHHHHHHHHHCcCEEEEec
Confidence 12345666667889987653
No 186
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=33.25 E-value=91 Score=27.38 Aligned_cols=67 Identities=18% Similarity=0.255 Sum_probs=40.1
Q ss_pred CCceEEEEEcccCCCc---hhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEEC
Q psy17159 43 NKTVTIGLVGKYTKFE---DCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVP 117 (326)
Q Consensus 43 ~~~~~I~iigdyg~~~---~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilp 117 (326)
.+..||||+ .+..+. ..+..+...|+..|...+.+|++.+.++. .++.......+.+ +++|.||..
T Consensus 6 ~~~~~igi~-q~~~hp~ld~~~~G~~~~L~~~G~~~g~nv~~~~~~a~--------gd~~~~~~~~~~l~~~~~DlIiai 76 (302)
T 3lkv_A 6 AKTAKVAVS-QIVEHPALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQ--------GNPAIAVQIARQFVGENPDVLVGI 76 (302)
T ss_dssp -CCEEEEEE-ESCCCHHHHHHHHHHHHHHHHTTCCBTTTEEEEEEECT--------TCHHHHHHHHHHHHTTCCSEEEEE
T ss_pred cCCceEEEE-EeecChhHHHHHHHHHHHHHhhCcccCCcEEEEEEeCC--------CCHHHHHHHHHHHHhcCCcEEEEc
Confidence 356899999 776532 23445777888888777777887777642 1222222223333 478987754
Q ss_pred C
Q psy17159 118 G 118 (326)
Q Consensus 118 G 118 (326)
|
T Consensus 77 ~ 77 (302)
T 3lkv_A 77 A 77 (302)
T ss_dssp S
T ss_pred C
Confidence 4
No 187
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=31.45 E-value=48 Score=29.06 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=25.1
Q ss_pred hcCCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEe
Q psy17159 108 FCKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 108 l~~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
...+|.||+..- .....+|++|...++|+.|+|
T Consensus 112 ~~~PdlliV~Dp------~~e~~ai~EA~~l~IPvIalv 144 (241)
T 2xzm_B 112 YEEPRVLIVTDP------RSDFQAIKEASYVNIPVIALC 144 (241)
T ss_dssp CCCCSEEEESCT------TTTHHHHHHHTTTTCCEEECC
T ss_pred cCCCCEEEEECC------CcchHHHHHHHHhCCCEEEEe
Confidence 457888888731 123468889988999999999
No 188
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Probab=31.35 E-value=40 Score=32.26 Aligned_cols=35 Identities=23% Similarity=0.348 Sum_probs=27.9
Q ss_pred CCCEEEECC-CCCCCCCchHHHHHHHHHHcCCCEEEE
Q psy17159 110 KVDGIIVPG-GFGKRGLEGKIAACKWARENNKPFLGI 145 (326)
Q Consensus 110 ~~dglilpG-G~~~~~~~~~~~~i~~~~~~~~PvLGI 145 (326)
.++||||-| |.|+-. ..+.+.|+++.++++||.=+
T Consensus 328 g~~GiVleg~G~Gn~p-~~~~~~l~~a~~~Gi~VV~~ 363 (438)
T 1zq1_A 328 GYKGIVIEGTGLGHTP-NDIIPSIERAVEEGVAVCMT 363 (438)
T ss_dssp TCSEEEEEEBTTTBCC-GGGHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEEeeECCCCCC-HHHHHHHHHHHHCCCEEEEe
Confidence 589999999 877644 56778899999999998644
No 189
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=31.22 E-value=62 Score=29.30 Aligned_cols=96 Identities=7% Similarity=0.046 Sum_probs=47.3
Q ss_pred HHHHHhhcCCCCCCCeeeCCCCCcccccch----------hhhhcCCCceEEEEEcccCCCchhHHHHHHHHHHHhhhcC
Q psy17159 7 VRAKISMFCHVTPENVIFNPDVKPIYKVRM----------LRIDRLNKTVTIGLVGKYTKFEDCYASLTRALEHASYHSN 76 (326)
Q Consensus 7 ~~~ki~~~~~~~~~~v~~~~~~~~~y~~p~----------~~~~~~~~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~ 76 (326)
..+.+|.+++|| |||.-|.. .+-|. +.+. .-+++||+++||-. +..+.+++..+....+
T Consensus 105 ~~~~la~~~~vP---VINagdg~--~~HPtQaLaDl~Ti~e~~g-~l~glkva~vGD~~-----~~rva~Sl~~~~~~~G 173 (304)
T 3r7f_A 105 YYEELVSQVNIP---ILNAGDGC--GQHPTQSLLDLMTIYEEFN-TFKGLTVSIHGDIK-----HSRVARSNAEVLTRLG 173 (304)
T ss_dssp CHHHHHHHCSSC---EEESCCTT--SCCHHHHHHHHHHHHHHHS-CCTTCEEEEESCCT-----TCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCC---EEeCCCCC--CcCcHHHHHHHHHHHHHhC-CCCCCEEEEEcCCC-----CcchHHHHHHHHHHcC
Confidence 456677888886 89886532 23343 1222 23468999999842 2234444444444333
Q ss_pred CceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEEC
Q psy17159 77 RHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVP 117 (326)
Q Consensus 77 ~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilp 117 (326)
. ++..+.+..+..... ....+++..+.++++|.|..-
T Consensus 174 ~--~v~~~~P~~~~~~~~--~~g~~~d~~eav~~aDvvyt~ 210 (304)
T 3r7f_A 174 A--RVLFSGPSEWQDEEN--TFGTYVSMDEAVESSDVVMLL 210 (304)
T ss_dssp C--EEEEESCGGGSCTTC--SSCEECCHHHHHHHCSEEEEC
T ss_pred C--EEEEECCCccCcchh--hcCccCCHHHHhCCCCEEEec
Confidence 3 344444444433110 000122233445666766554
No 190
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=31.16 E-value=60 Score=26.15 Aligned_cols=53 Identities=6% Similarity=0.070 Sum_probs=33.8
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPG 118 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpG 118 (326)
|||+|+ |++..||-..+.+.|....... .+++.-+... ....+.++|.|||.-
T Consensus 1 Mki~Iv--Y~S~tGnT~~iA~~Ia~~l~~~--~v~i~~~~~~----------------~~~~l~~~d~ii~g~ 53 (175)
T 1ag9_A 1 AITGIF--FGSDTGNTENIAKMIQKQLGKD--VADVHDIAKS----------------SKEDLEAYDILLLGI 53 (175)
T ss_dssp CCEEEE--ECCSSSHHHHHHHHHHHHHCTT--TEEEEEGGGC----------------CHHHHHTCSEEEEEC
T ss_pred CEEEEE--EECCCchHHHHHHHHHHHhccC--ceEEEEcccC----------------ChhHhhhCCEEEEEE
Confidence 467877 7788899888998887754321 2333333210 123677899998864
No 191
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=30.73 E-value=70 Score=26.53 Aligned_cols=55 Identities=11% Similarity=0.131 Sum_probs=35.9
Q ss_pred ceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECC
Q psy17159 45 TVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPG 118 (326)
Q Consensus 45 ~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpG 118 (326)
.++|.|+ |++..||-..+.+.|.......+..+.+.-++.. ...+..+|.|||.-
T Consensus 21 ~~kv~Iv--Y~S~tGnTe~~A~~ia~~l~~~g~~v~v~~l~~~-----------------~~~l~~~d~vi~g~ 75 (191)
T 1bvy_F 21 NTPLLVL--YGSNMGTAEGTARDLADIAMSKGFAPQVATLDSH-----------------AGNLPREGAVLIVT 75 (191)
T ss_dssp CCCEEEE--EECSSSHHHHHHHHHHHHHHTTTCCCEEEEGGGS-----------------TTCCCSSSEEEEEE
T ss_pred CCeEEEE--EECCChHHHHHHHHHHHHHHhCCCceEEeeHHHh-----------------hhhhhhCCeEEEEE
Confidence 4578877 7888899999999888765544445555444310 11466778887743
No 192
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=30.67 E-value=2.2e+02 Score=23.89 Aligned_cols=87 Identities=21% Similarity=0.218 Sum_probs=41.7
Q ss_pred CceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCC
Q psy17159 44 KTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFG 121 (326)
Q Consensus 44 ~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~ 121 (326)
++.+||++ --.....-+..+...++.+....+..+.+ .+.. .++....+..+.+ ..+||||+.+...
T Consensus 6 ~~~~Ig~i-~~~~~~~~~~~~~~gi~~~~~~~g~~~~~--~~~~--------~~~~~~~~~~~~l~~~~vdgii~~~~~~ 74 (289)
T 1dbq_A 6 HTKSIGLL-ATSSEAAYFAEIIEAVEKNCFQKGYTLIL--GNAW--------NNLEKQRAYLSMMAQKRVDGLLVMCSEY 74 (289)
T ss_dssp --CEEEEE-ESCTTSHHHHHHHHHHHHHHHHHTCEEEE--EECT--------TCHHHHHHHHHHHHHTTCSEEEEECSCC
T ss_pred CCCEEEEE-eCCCCChHHHHHHHHHHHHHHHcCCeEEE--EcCC--------CChHHHHHHHHHHHhCCCCEEEEEeccC
Confidence 34578888 21111133556777777776665555443 2321 0111111112222 4799999976432
Q ss_pred CCCCchHHHHHHHHHHcCCCEEEEe
Q psy17159 122 KRGLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 122 ~~~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
. ......++. ..++|+.-+.
T Consensus 75 ~---~~~~~~l~~--~~~iPvV~~~ 94 (289)
T 1dbq_A 75 P---EPLLAMLEE--YRHIPMVVMD 94 (289)
T ss_dssp C---HHHHHHHHH--TTTSCEEEEE
T ss_pred C---HHHHHHHHh--ccCCCEEEEc
Confidence 1 122333321 1578877654
No 193
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=30.30 E-value=79 Score=25.53 Aligned_cols=15 Identities=13% Similarity=-0.144 Sum_probs=11.3
Q ss_pred hhhhhcCCCEEEECC
Q psy17159 104 TWSDFCKVDGIIVPG 118 (326)
Q Consensus 104 ~~~~l~~~dglilpG 118 (326)
..+.+..+|+|||.-
T Consensus 78 ~~~~l~~aD~iI~~s 92 (191)
T 1t0i_A 78 WSRIVNALDIIVFVT 92 (191)
T ss_dssp HHHHHHTCSEEEEEE
T ss_pred HHHHHHhCCEEEEEe
Confidence 445778999998853
No 194
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=29.59 E-value=1.3e+02 Score=24.40 Aligned_cols=11 Identities=9% Similarity=-0.239 Sum_probs=8.6
Q ss_pred ceEEEEEcccC
Q psy17159 45 TVTIGLVGKYT 55 (326)
Q Consensus 45 ~~~I~iigdyg 55 (326)
++||++++|.-
T Consensus 5 ~mri~~iSD~H 15 (228)
T 1uf3_A 5 VRYILATSNPM 15 (228)
T ss_dssp CCEEEEEECCT
T ss_pred eEEEEEEeecc
Confidence 47999997764
No 195
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=29.56 E-value=1.2e+02 Score=25.02 Aligned_cols=15 Identities=20% Similarity=0.003 Sum_probs=11.0
Q ss_pred chhhhhcCCCEEEEC
Q psy17159 103 KTWSDFCKVDGIIVP 117 (326)
Q Consensus 103 ~~~~~l~~~dglilp 117 (326)
+..+.+..+|+|||.
T Consensus 66 ~~~~~l~~AD~iV~~ 80 (196)
T 3lcm_A 66 KYRDLVTWADHLIFI 80 (196)
T ss_dssp HHHHHHHHCSEEEEE
T ss_pred HHHHHHHhCCEEEEE
Confidence 345567789999875
No 196
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=29.55 E-value=49 Score=26.87 Aligned_cols=42 Identities=14% Similarity=-0.015 Sum_probs=30.3
Q ss_pred hhhhhcCCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEehh
Q psy17159 104 TWSDFCKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLG 148 (326)
Q Consensus 104 ~~~~l~~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIClG 148 (326)
..+.|..+|.||.=.+ ....|..--+-++.+.+|||++.+..
T Consensus 71 d~~~i~~aD~vva~~~---~~d~Gt~~EiGyA~algKPVi~l~~~ 112 (165)
T 2khz_A 71 DLNWLQQADVVVAEVT---QPSLGVGYELGRAVALGKPILCLFRP 112 (165)
T ss_dssp HHHHHHHCSEEEEECS---SCCHHHHHHHHHHHHTCSSEEEEECT
T ss_pred HHHHHHhCCEEEEECC---CCCCCHHHHHHHHHHCCCEEEEEEcC
Confidence 3456789999987443 23356666777888899999998743
No 197
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=29.47 E-value=1.8e+02 Score=23.99 Aligned_cols=68 Identities=13% Similarity=0.148 Sum_probs=32.8
Q ss_pred eEEEEE-cccCCCchhHH-HHHHHHHHHhhhcCCceEEEEeecccccCCC---CCCCchhhcchhhhhcCCCEEEECC
Q psy17159 46 VTIGLV-GKYTKFEDCYA-SLTRALEHASYHSNRHLQLKYFDSELLSMDP---KTGNMAEYHKTWSDFCKVDGIIVPG 118 (326)
Q Consensus 46 ~~I~ii-gdyg~~~~~~~-Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~---~~~~~~~~~~~~~~l~~~dglilpG 118 (326)
.+|+|| |.... +++. .+.+.+..... ..+++..++-.++.-.. ....|....+..+.+..+||+||.-
T Consensus 3 k~I~vi~GS~R~--~S~~~~la~~~~~~~~---~~~~~~~idl~dLP~~~~d~~~~~p~~~~~l~~~i~~aD~~ii~t 75 (190)
T 3u7r_A 3 KTVAVMVGSLRK--DSLNHKLMKVLQKLAE---GRLEFHLLHIGDLPHYNDDLWADAPESVLRLKDRIEHSDAVLAIT 75 (190)
T ss_dssp EEEEEEESCCST--TCHHHHHHHHHHHHHT---TTEEEEECCGGGSCCCCGGGGGGCCHHHHHHHHHHHTSSEEEEEC
T ss_pred CEEEEEECCCCC--CCHHHHHHHHHHHhcc---CCCEEEEEecccCCCCCCCcccCCCHHHHHHHHHHHhCCcEEEec
Confidence 468765 44332 3332 24444443322 24555555533321110 0112334444566788999998853
No 198
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=29.39 E-value=1.3e+02 Score=22.78 Aligned_cols=62 Identities=11% Similarity=0.032 Sum_probs=40.3
Q ss_pred eEEEEEcccCCCchhHHHH--HHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCC
Q psy17159 46 VTIGLVGKYTKFEDCYASL--TRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGG 119 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si--~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG 119 (326)
+||..|-.... |-=+++ .++|++++...+.++.+.--.+...+.. + ..++++.+|.||+.+-
T Consensus 3 mkivaVtaCpt--GiAhTymAAeaLekaA~~~G~~ikVEtqgs~g~~n~-L---------t~~~I~~AD~VIia~d 66 (106)
T 2m1z_A 3 RKIIAVTACAT--GVAHTYMAAQALKKGAKKMGNLIKVETQGATGIENE-L---------TEKDVNIGEVVIFAVD 66 (106)
T ss_dssp CEEEEEEECSS--CHHHHHHHHHHHHHHHHHHTCEEEEEEEETTEESSC-C---------CHHHHHHCSEEEEEES
T ss_pred ccEEEEEECCC--cHHHHHHHHHHHHHHHHHCCCEEEEEEecCccccCC-C---------CHHHHhhCCEEEEecc
Confidence 45544425554 655554 5789999988888877776665433321 1 1347889999999874
No 199
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=29.17 E-value=2.2e+02 Score=23.83 Aligned_cols=84 Identities=18% Similarity=0.137 Sum_probs=41.9
Q ss_pred EEEEE-cccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCC
Q psy17159 47 TIGLV-GKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKR 123 (326)
Q Consensus 47 ~I~ii-gdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~ 123 (326)
+|+++ .+... .-+..+...+++.....+..+.+..... ++..-.+..+.+ ..+||||+.+... .
T Consensus 3 ~Igvi~~~~~~--~f~~~~~~gi~~~~~~~g~~~~~~~~~~----------~~~~~~~~i~~l~~~~vdgiIi~~~~~-~ 69 (271)
T 2dri_A 3 TIALVVSTLNN--PFFVSLKDGAQKEADKLGYNLVVLDSQN----------NPAKELANVQDLTVRGTKILLINPTDS-D 69 (271)
T ss_dssp EEEEEESCSSS--HHHHHHHHHHHHHHHHHTCEEEEEECTT----------CHHHHHHHHHHHTTTTEEEEEECCSST-T
T ss_pred EEEEEecCCCC--HHHHHHHHHHHHHHHHcCcEEEEeCCCC----------CHHHHHHHHHHHHHcCCCEEEEeCCCh-H
Confidence 57776 12221 3355678888777766655444322111 111000011222 3689999976321 1
Q ss_pred CCchHHHHHHHHHHcCCCEEEEe
Q psy17159 124 GLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 124 ~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
.....++.+.+.++|+.-+.
T Consensus 70 ---~~~~~~~~~~~~~iPvV~i~ 89 (271)
T 2dri_A 70 ---AVGNAVKMANQANIPVITLD 89 (271)
T ss_dssp ---TTHHHHHHHHHTTCCEEEES
T ss_pred ---HHHHHHHHHHHCCCcEEEec
Confidence 11234555666788987553
No 200
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=28.59 E-value=2.9e+02 Score=23.98 Aligned_cols=87 Identities=16% Similarity=0.127 Sum_probs=45.6
Q ss_pred CceEEEEEcccC--CCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCC
Q psy17159 44 KTVTIGLVGKYT--KFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGG 119 (326)
Q Consensus 44 ~~~~I~iigdyg--~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG 119 (326)
++.+||++ --. ....-+..+...++....+.+..+.+..... ++..-.+..+.+ ..+||||+.+.
T Consensus 60 ~~~~Igvi-~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~----------~~~~~~~~~~~l~~~~vdgiIi~~~ 128 (338)
T 3dbi_A 60 STQTLGLV-VTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKH----------SAEEERQAIQYLLDLRCDAIMIYPR 128 (338)
T ss_dssp CCSEEEEE-ECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEECTT----------SHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCCEEEEE-ecCCcccChhHHHHHHHHHHHHHHCCCEEEEEeCCC----------ChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 34578887 222 1113356788888888777766555544221 111101112222 47999999874
Q ss_pred CCCCCCchHHHHHHHHHHcCCCEEEEe
Q psy17159 120 FGKRGLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 120 ~~~~~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
... ...+.+.+.+.++|+.-+.
T Consensus 129 ~~~-----~~~~~~~~~~~~iPvV~~~ 150 (338)
T 3dbi_A 129 FLS-----VDEIDDIIDAHSQPIMVLN 150 (338)
T ss_dssp SSC-----HHHHHHHHHHCSSCEEEES
T ss_pred CCC-----hHHHHHHHHcCCCCEEEEc
Confidence 321 1123333445678887664
No 201
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=28.57 E-value=1.9e+02 Score=25.77 Aligned_cols=82 Identities=11% Similarity=0.071 Sum_probs=40.9
Q ss_pred CCceEEEEEcccCCCchhHH--HHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhc---CCCEEEEC
Q psy17159 43 NKTVTIGLVGKYTKFEDCYA--SLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFC---KVDGIIVP 117 (326)
Q Consensus 43 ~~~~~I~iigdyg~~~~~~~--Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~---~~dglilp 117 (326)
.+++|||||| . |+.. .++.+|.... .++++.+-...-+.. ....|.+..+.|+ ++|.|+|+
T Consensus 23 M~~~rvgiiG-~----G~ig~~~~~~~l~~~~-----~~~lvav~d~~~~~~----g~~~~~~~~~ll~~~~~vD~V~i~ 88 (330)
T 4ew6_A 23 MSPINLAIVG-V----GKIVRDQHLPSIAKNA-----NFKLVATASRHGTVE----GVNSYTTIEAMLDAEPSIDAVSLC 88 (330)
T ss_dssp CCCEEEEEEC-C----SHHHHHTHHHHHHHCT-----TEEEEEEECSSCCCT----TSEEESSHHHHHHHCTTCCEEEEC
T ss_pred CCCceEEEEe-c----CHHHHHHHHHHHHhCC-----CeEEEEEEeCChhhc----CCCccCCHHHHHhCCCCCCEEEEe
Confidence 3468999994 3 4444 3666666532 234443332221111 1123444555554 59999998
Q ss_pred CCCCCCCCchHHHHHHHHHHcCCCEE
Q psy17159 118 GGFGKRGLEGKIAACKWARENNKPFL 143 (326)
Q Consensus 118 GG~~~~~~~~~~~~i~~~~~~~~PvL 143 (326)
-.+. .-.+.+..+++.+++||
T Consensus 89 tp~~-----~H~~~~~~al~aGkhVl 109 (330)
T 4ew6_A 89 MPPQ-----YRYEAAYKALVAGKHVF 109 (330)
T ss_dssp SCHH-----HHHHHHHHHHHTTCEEE
T ss_pred CCcH-----HHHHHHHHHHHcCCcEE
Confidence 6421 12334444445555554
No 202
>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}
Probab=28.44 E-value=1.5e+02 Score=27.35 Aligned_cols=69 Identities=14% Similarity=-0.002 Sum_probs=38.3
Q ss_pred HHHHHHhhcCCCCCCCeeeCCCCCcccccch----------hhhhcC------------CCceEEEEEcccCCCchhHHH
Q psy17159 6 SVRAKISMFCHVTPENVIFNPDVKPIYKVRM----------LRIDRL------------NKTVTIGLVGKYTKFEDCYAS 63 (326)
Q Consensus 6 ~~~~ki~~~~~~~~~~v~~~~~~~~~y~~p~----------~~~~~~------------~~~~~I~iigdyg~~~~~~~S 63 (326)
...+.+|.+++|| |||.-|- .+.|. +.+... .++++|++|||-. .
T Consensus 133 ~~~~~lA~~s~vP---VINag~d---~~HPtQaLaDl~TI~E~~G~~~~~~~~~~~~~~l~glkva~vGD~~---n---- 199 (353)
T 3sds_A 133 SDIANLAKHSSVP---VINALCD---TFHPLQAIADFLTIHESFASQSATHGTHPSSLGLEGLKIAWVGDAN---N---- 199 (353)
T ss_dssp HHHHHHHHHCSSC---EEEEECS---SCCHHHHHHHHHHHHHHTC--------CTTCCSCTTCEEEEESCCC---H----
T ss_pred HHHHHHHhhCCCC---EEECCCC---CCCcHHHHHHHHHHHHHhCCCcccccccccccccCCCEEEEECCCc---h----
Confidence 4456788899997 7777532 25554 122111 1568999999852 2
Q ss_pred HHHHHHHHhhhcCCceEEEEeecccc
Q psy17159 64 LTRALEHASYHSNRHLQLKYFDSELL 89 (326)
Q Consensus 64 i~~aL~~~g~~~~~~v~~~~i~~~~l 89 (326)
+.+++..+....+. ++..+.+..+
T Consensus 200 va~Sl~~~l~~lG~--~v~~~~P~~~ 223 (353)
T 3sds_A 200 VLFDLAIAATKMGV--NVAVATPRGY 223 (353)
T ss_dssp HHHHHHHHHHHTTC--EEEEECCTTC
T ss_pred HHHHHHHHHHHcCC--EEEEECCccc
Confidence 45555544444443 3444444444
No 203
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=28.44 E-value=83 Score=25.47 Aligned_cols=77 Identities=10% Similarity=0.120 Sum_probs=39.8
Q ss_pred cCCCchhHHHHHHHHHHHhhhcCCceEEEEeecc-cccCCCCCCCchhhcchhhhhcCCCEEEECCC-CCCCCCchHHHH
Q psy17159 54 YTKFEDCYASLTRALEHASYHSNRHLQLKYFDSE-LLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGG-FGKRGLEGKIAA 131 (326)
Q Consensus 54 yg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~-~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG-~~~~~~~~~~~~ 131 (326)
||. .++..+.+.+++.+...+.+++...-+.+ +|- ++ +-+....+|||||=+| +..... .+.++
T Consensus 26 YG~--~Tl~di~~~l~~~a~~~g~~v~~~QSN~EgeLI--------d~---Ih~a~~~~dgiiINpgA~THtSv-AlrDA 91 (151)
T 3u80_A 26 YGR--QDLDTLRKLCAEWGKDLGLEVEVRQTDDEAEMV--------RW---MHQAADEKTPVVMNPAAFTHYSY-ALADA 91 (151)
T ss_dssp --C--HHHHHHHHHHHHHHHHTTEEEEEEECSCHHHHH--------HH---HHHHHHHTCCEEEECTTCCSCCH-HHHHH
T ss_pred CCC--CCHHHHHHHHHHHHHHcCCEEEEEecCCHHHHH--------HH---HHHhhhcCcEEEECcchhhhhhH-HHHHH
Confidence 776 78899999999988876654443333211 000 00 1112245899998554 443332 33344
Q ss_pred HHHHHHcCCCEEE
Q psy17159 132 CKWARENNKPFLG 144 (326)
Q Consensus 132 i~~~~~~~~PvLG 144 (326)
++....-++|+.=
T Consensus 92 l~~l~~~~~P~VE 104 (151)
T 3u80_A 92 AHMVIDENLPLME 104 (151)
T ss_dssp HHHHHHTTCCEEE
T ss_pred HHHHhhcCCCEEE
Confidence 3333344677654
No 204
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=28.39 E-value=2.9e+02 Score=24.99 Aligned_cols=94 Identities=14% Similarity=0.165 Sum_probs=0.0
Q ss_pred ceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCce-------------EEEEeecccccCCCC-------------CCCc
Q psy17159 45 TVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHL-------------QLKYFDSELLSMDPK-------------TGNM 98 (326)
Q Consensus 45 ~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v-------------~~~~i~~~~l~~~~~-------------~~~~ 98 (326)
..+|+|+ --|-..--..+.++++.+.+...+.+| ++..++...+..... ..++
T Consensus 2 ~k~i~Il-tsGGdapGmNaair~vv~~a~~~g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LGssR~~~~~~~ 80 (320)
T 1pfk_A 2 IKKIGVL-TSGGDAPGMNAAIRGVVRSALTEGLEVMGIYDGYLGLYEDRMVQLDRYSVSDMINRGGTFLGSARFPEFRDE 80 (320)
T ss_dssp CCEEEEE-ECSSCCTTHHHHHHHHHHHHHHTTCEEEEESTHHHHHHTTCEEEECSGGGTTCTTCCSCTTCCCCCGGGGSH
T ss_pred CCEEEEE-ccCCCchhHHHHHHHHHHHHHHCCCEEEEEecChHHhcCCCEEECCHHHHhhHHhCCCCeeccCCCCCCCCH
Q ss_pred hhhcchhhhhc--CCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEE
Q psy17159 99 AEYHKTWSDFC--KVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGI 145 (326)
Q Consensus 99 ~~~~~~~~~l~--~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGI 145 (326)
+.++++.+.|+ +.|+||+-|| .+.......+.+.++|+.||
T Consensus 81 ~~~~~~~~~l~~~~Id~LvvIGG------dgS~~~a~~L~~~~i~vvgi 123 (320)
T 1pfk_A 81 NIRAVAIENLKKRGIDALVVIGG------DGSYMGAMRLTEMGFPCIGL 123 (320)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEC------HHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEECC------CchHHHHHHHHhhCCCEEEE
No 205
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=28.20 E-value=45 Score=28.56 Aligned_cols=65 Identities=22% Similarity=0.323 Sum_probs=34.9
Q ss_pred CCceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCc-eEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECC
Q psy17159 43 NKTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRH-LQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPG 118 (326)
Q Consensus 43 ~~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~-v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpG 118 (326)
+++.+||++ --.....-+..+...++.+..+.+.. +.+..... ++..-.+..+.+ ..+||||+.+
T Consensus 8 ~~~~~Igvi-~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~----------~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 8 KKSKMIGII-IPDLNNRFYAQIIDGIQEVIQKEGYTALISFSTNS----------DVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp CCCCEEEEE-ESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECSSC----------CHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CCCCEEEEE-eCCCCChhHHHHHHHHHHHHHHCCCCEEEEEeCCC----------ChHHHHHHHHHHHhCCCCEEEEcc
Confidence 345678888 22211134666888888887776655 44432221 111101112223 4799999987
No 206
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}
Probab=28.16 E-value=2e+02 Score=25.85 Aligned_cols=20 Identities=15% Similarity=-0.114 Sum_probs=13.6
Q ss_pred hhcchhhhhcC--CCEEEECCC
Q psy17159 100 EYHKTWSDFCK--VDGIIVPGG 119 (326)
Q Consensus 100 ~~~~~~~~l~~--~dglilpGG 119 (326)
.|.+..+.+++ +|.|+|+--
T Consensus 53 ~~~~~~~ll~~~~vD~V~i~tp 74 (362)
T 3fhl_A 53 IVRSFKELTEDPEIDLIVVNTP 74 (362)
T ss_dssp EESCSHHHHTCTTCCEEEECSC
T ss_pred eECCHHHHhcCCCCCEEEEeCC
Confidence 35555666654 899999754
No 207
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=27.96 E-value=85 Score=25.46 Aligned_cols=53 Identities=17% Similarity=0.098 Sum_probs=31.4
Q ss_pred cCCCchhHHHHHHHHHHHhhhcCCceEEEEeecc-cccCCCCCCCchhhcchhhhhcCCCEEEECCC
Q psy17159 54 YTKFEDCYASLTRALEHASYHSNRHLQLKYFDSE-LLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGG 119 (326)
Q Consensus 54 yg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~-~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG 119 (326)
||. .++..+.+.+++.+...+.+++...-+.+ +|- ++ +-+....+|||||=+|
T Consensus 29 YG~--~Tl~di~~~l~~~a~~~g~~~~~~QSN~EgeLI--------d~---Ih~a~~~~dgiiINpg 82 (153)
T 3lwz_A 29 YGY--TTLAEIVSQLEIQAQGMDVALSHLQSNAEHALI--------DS---IHQARGNTDFILINPA 82 (153)
T ss_dssp HCC--CCHHHHHHHHHHHHHHTTEEEEEEECSCHHHHH--------HH---HHHHTTTCSEEEEECG
T ss_pred CCC--CCHHHHHHHHHHHHHHcCCEEEEEecCCHHHHH--------HH---HHHhhhcCceEEEccc
Confidence 776 77899999999988876654443333211 000 00 1112356899999654
No 208
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.72 E-value=55 Score=27.85 Aligned_cols=33 Identities=24% Similarity=0.283 Sum_probs=24.8
Q ss_pred hcCCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEe
Q psy17159 108 FCKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 108 l~~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
...+|.||+..- .....++++|...++|+.|+|
T Consensus 109 ~~~Pdllvv~Dp------~~d~~ai~EA~~l~IP~Ial~ 141 (202)
T 3j20_B 109 FFEPDVLIVTDP------RADHQAMREAVEIGIPIVALV 141 (202)
T ss_dssp CCCCSEEEESCT------TTSHHHHHHHHHHTCCEEEEE
T ss_pred ccCCCeEEEeCC------ccchHHHHHHHHcCCCEEEEE
Confidence 347888888731 123468888888999999999
No 209
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=27.62 E-value=1e+02 Score=27.82 Aligned_cols=59 Identities=19% Similarity=0.148 Sum_probs=34.3
Q ss_pred HHHHHHhhcCCCCCCCeeeCCCCCcccccch----------hhhhcCCCceEEEEEcccCCCchhHHHHHHHHHHHhhhc
Q psy17159 6 SVRAKISMFCHVTPENVIFNPDVKPIYKVRM----------LRIDRLNKTVTIGLVGKYTKFEDCYASLTRALEHASYHS 75 (326)
Q Consensus 6 ~~~~ki~~~~~~~~~~v~~~~~~~~~y~~p~----------~~~~~~~~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~ 75 (326)
...+.+|.+++|| |||.-|.. .+.|. +.+. .-+++||++|||-. +..+.+++..+....
T Consensus 108 ~~~~~lA~~~~vP---VINag~g~--~~HPtQ~LaDl~Ti~e~~g-~l~glkva~vGD~~-----~~rva~Sl~~~~~~~ 176 (306)
T 4ekn_B 108 GAARLASEYSQVP---IINAGDGS--NQHPTQTLLDLYTIMREIG-RIDGIKIAFVGDLK-----YGRTVHSLVYALSLF 176 (306)
T ss_dssp THHHHHHHHCSSC---EEESCSSS--SCCHHHHHHHHHHHHHHHS-CSTTCEEEEESCTT-----TCHHHHHHHHHHHTS
T ss_pred HHHHHHHHhCCCC---EEeCCCCC--CcCcHHHHHHHHHHHHHhC-CcCCCEEEEEcCCC-----CCcHHHHHHHHHHhc
Confidence 3456778888885 88885432 23343 1222 23468999999842 223555555555544
No 210
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=27.52 E-value=3.1e+02 Score=24.81 Aligned_cols=94 Identities=13% Similarity=0.137 Sum_probs=0.0
Q ss_pred ceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCce-------------EEEEeecccccCCCC-------------CCCc
Q psy17159 45 TVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHL-------------QLKYFDSELLSMDPK-------------TGNM 98 (326)
Q Consensus 45 ~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v-------------~~~~i~~~~l~~~~~-------------~~~~ 98 (326)
.++|+|+ --|-..--..+.++++.+.+...+.+| ++..++...+..... ..++
T Consensus 1 ~k~i~Il-tsGGdapGmNaair~vv~~a~~~g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LGssR~~~~~~~ 79 (319)
T 1zxx_A 1 MKRIGIL-TSGGDAPGMNAAVRAVTRVAIANGLEVFGIRYGFAGLVAGDIFPLESEDVAHLINVSGTFLYSARYPEFAEE 79 (319)
T ss_dssp CCEEEEE-ECSSCCTTHHHHHHHHHHHHHTTTCEEEEECTHHHHHHHTCEEECCGGGGTTCTTCCSCTTCCCCCGGGTSH
T ss_pred CCEEEEE-ccCCCchhHHHHHHHHHHHHHHCCCEEEEEccChHHHcCCCEEECCHHHHHhHHhCCCcccccCCCCccCCH
Q ss_pred hhhcchhhhhc--CCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEE
Q psy17159 99 AEYHKTWSDFC--KVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGI 145 (326)
Q Consensus 99 ~~~~~~~~~l~--~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGI 145 (326)
+.++++.+.++ +.|+||+-|| .+.......+.+.++|+.||
T Consensus 80 ~~~~~~~~~l~~~~Id~LvvIGG------dgS~~~a~~L~~~~i~vvgi 122 (319)
T 1zxx_A 80 EGQLAGIEQLKKHGIDAVVVIGG------DGSYHGALQLTRHGFNSIGL 122 (319)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEC------HHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEECC------chHHHHHHHHHHhCCCEEEE
No 211
>2him_A L-asparaginase 1; hydrolase; 1.82A {Escherichia coli} PDB: 2p2d_A 2p2n_A 3ntx_A* 2ocd_A
Probab=27.51 E-value=45 Score=30.94 Aligned_cols=36 Identities=14% Similarity=0.240 Sum_probs=28.3
Q ss_pred CCCEEEECC-CCCCCCC-chHHHHHHHHHHcCCCEEEE
Q psy17159 110 KVDGIIVPG-GFGKRGL-EGKIAACKWARENNKPFLGI 145 (326)
Q Consensus 110 ~~dglilpG-G~~~~~~-~~~~~~i~~~~~~~~PvLGI 145 (326)
.++||||-| |.|+-.. ..+.+.|+++.++++||.=+
T Consensus 253 g~~GiVle~~G~Gn~p~~~~~~~~l~~a~~~Gi~VV~~ 290 (358)
T 2him_A 253 PVKALILRSYGVGNAPQNKAFLQELQEASDRGIVVVNL 290 (358)
T ss_dssp SCSEEEEEEBTTTBCCCCHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEEecCCCCCCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 589999998 7776442 36788899999999998644
No 212
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=27.41 E-value=99 Score=26.22 Aligned_cols=16 Identities=19% Similarity=0.206 Sum_probs=11.7
Q ss_pred chhhhhcCCCEEEECC
Q psy17159 103 KTWSDFCKVDGIIVPG 118 (326)
Q Consensus 103 ~~~~~l~~~dglilpG 118 (326)
+..+.+.++|+|||.-
T Consensus 72 ~~~~~l~~AD~iI~~s 87 (242)
T 1sqs_A 72 VIKKELLESDIIIISS 87 (242)
T ss_dssp HHHHHHHHCSEEEEEE
T ss_pred HHHHHHHHCCEEEEEc
Confidence 3445678999999864
No 213
>1wsa_A Asparaginase, asparagine amidohydrolase; periplasmic; 2.20A {Wolinella succinogenes} SCOP: c.88.1.1
Probab=27.38 E-value=44 Score=30.62 Aligned_cols=35 Identities=23% Similarity=0.119 Sum_probs=27.2
Q ss_pred CCCEEEECC-CCCCCCCchHHHHHHHHHHcCCCEEEE
Q psy17159 110 KVDGIIVPG-GFGKRGLEGKIAACKWARENNKPFLGI 145 (326)
Q Consensus 110 ~~dglilpG-G~~~~~~~~~~~~i~~~~~~~~PvLGI 145 (326)
.++||||-| |.|+-. ..+.+.|+++.++++||.=+
T Consensus 239 g~~GiVle~~G~Gn~p-~~~~~~l~~a~~~gi~VV~~ 274 (330)
T 1wsa_A 239 GAKGIIHAGMGNGNPF-PLTQNALEKAAKSGVVVARS 274 (330)
T ss_dssp TCSEEEEEEBTTTBCC-HHHHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEEeeECCCCCC-HHHHHHHHHHHHCCCEEEEE
Confidence 589999988 777644 46778899998999997643
No 214
>1nns_A L-asparaginase II; amidrohydrolase, crystallographic comparison hydrolase; 1.95A {Escherichia coli} SCOP: c.88.1.1 PDB: 3eca_A 1ho3_A 1jaz_A 1ihd_A 1jja_A 4eca_A*
Probab=27.20 E-value=44 Score=30.52 Aligned_cols=35 Identities=20% Similarity=0.249 Sum_probs=27.4
Q ss_pred CCCEEEECC-CCCCCCCchHHHHHHHHHHcCCCEEEE
Q psy17159 110 KVDGIIVPG-GFGKRGLEGKIAACKWARENNKPFLGI 145 (326)
Q Consensus 110 ~~dglilpG-G~~~~~~~~~~~~i~~~~~~~~PvLGI 145 (326)
.++||||-| |.|+-. ..+.+.|+++.++++||.=+
T Consensus 235 g~~GiVl~~~G~Gn~p-~~~~~~l~~a~~~gi~VV~~ 270 (326)
T 1nns_A 235 GYDGIVSAGVGNGNLY-KSVFDTLATAAKTGTAVVRS 270 (326)
T ss_dssp TCSEEEEEEBTTTBCC-HHHHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEEeeECCCCCC-HHHHHHHHHHHHCCCEEEEE
Confidence 589999988 777644 46778899998999998644
No 215
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=26.99 E-value=2.3e+02 Score=25.80 Aligned_cols=72 Identities=10% Similarity=0.073 Sum_probs=41.8
Q ss_pred HHHHHHHhhcCCCCCCCeeeCCCCCcccccch----------hhhhc------CCCceEEEEEcccCCCchhHHHHHHHH
Q psy17159 5 ESVRAKISMFCHVTPENVIFNPDVKPIYKVRM----------LRIDR------LNKTVTIGLVGKYTKFEDCYASLTRAL 68 (326)
Q Consensus 5 ~~~~~ki~~~~~~~~~~v~~~~~~~~~y~~p~----------~~~~~------~~~~~~I~iigdyg~~~~~~~Si~~aL 68 (326)
....+.+|.+++|| |||.-|- .+.|. +.+.. .-++++|++|||--. ..-+|.+.++
T Consensus 111 ~~~~~~lA~~~~vP---VINag~~---~~HPtQaLaDl~Ti~e~~g~~~~~~~~l~gl~va~vGD~~~--~va~Sl~~~~ 182 (328)
T 3grf_A 111 KEMMREMAQHASVP---CINALDD---FGHPLQMVCDFMTIKEKFTAAGEFSNGFKGIKFAYCGDSMN--NVTYDLMRGC 182 (328)
T ss_dssp HHHHHHHHHHCSSC---EEESSCS---SCCHHHHHHHHHHHHHHHHHTTCCTTTGGGCCEEEESCCSS--HHHHHHHHHH
T ss_pred hhHHHHHHHhCCCC---EEeCCCC---CCCcHHHHHHHHHHHHHhCCccccccccCCcEEEEeCCCCc--chHHHHHHHH
Confidence 35567788899996 8888764 46675 22220 234589999998521 2344455455
Q ss_pred HHHhhhcCCceEEEEeeccccc
Q psy17159 69 EHASYHSNRHLQLKYFDSELLS 90 (326)
Q Consensus 69 ~~~g~~~~~~v~~~~i~~~~l~ 90 (326)
...|. ++..+.+..+.
T Consensus 183 ~~~G~------~v~~~~P~~~~ 198 (328)
T 3grf_A 183 ALLGM------ECHVCCPDHKD 198 (328)
T ss_dssp HHHTC------EEEEECCSSGG
T ss_pred HHcCC------EEEEECChHhh
Confidence 44443 34445554443
No 216
>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, JOI for structural genomics, JCSG; 2.50A {Thermotoga maritima} SCOP: c.55.1.9 c.55.1.9
Probab=26.90 E-value=53 Score=28.10 Aligned_cols=46 Identities=20% Similarity=0.107 Sum_probs=28.5
Q ss_pred hcCCCEEEECCCCCCC-CCchHHHHHHH-HHHcCCCEEEEehhHHHHHH
Q psy17159 108 FCKVDGIIVPGGFGKR-GLEGKIAACKW-ARENNKPFLGICLGLQAAVI 154 (326)
Q Consensus 108 l~~~dglilpGG~~~~-~~~~~~~~i~~-~~~~~~PvLGIClG~QlL~~ 154 (326)
+.+.|+|.++-|||.- +..--+...+. +...++|+.||+- ++.++.
T Consensus 64 ~~dld~Iav~~GPGsfTGlRiG~~~Ak~La~~~~iPl~gVs~-l~a~a~ 111 (218)
T 2a6a_A 64 VKDLDVVGVGIGPGGLTGLRVGIATVVGLVSPYDIPVAPLNS-FEMTAK 111 (218)
T ss_dssp GGGCSEEEEECCSSCHHHHHHHHHHHHHHHGGGTCCEEEECH-HHHHHH
T ss_pred HHHCCEEEEEcCCCchHhHHHHHHHHHHHHHHcCCCEEEeCc-HHHHHh
Confidence 4578999999999863 11111112222 3346899999995 555554
No 217
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*
Probab=25.52 E-value=1.1e+02 Score=24.11 Aligned_cols=51 Identities=10% Similarity=0.161 Sum_probs=32.7
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECC
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPG 118 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpG 118 (326)
+||.|+ |++..||-..+.+.|...- +. +++.-++.. ....+.++|.|||..
T Consensus 2 ~k~~I~--Y~S~tGnT~~~A~~ia~~l---g~-~~~~~~~~~----------------~~~~l~~~d~ii~g~ 52 (164)
T 2bmv_A 2 GKIGIF--FGTDSGNAEAIAEKISKAI---GN-AEVVDVAKA----------------SKEQFNSFTKVILVA 52 (164)
T ss_dssp CCEEEE--ECCSSSHHHHHHHHHHHHH---CS-EEEEEGGGC----------------CHHHHTTCSEEEEEE
T ss_pred CeEEEE--EECCCchHHHHHHHHHHHc---CC-cEEEecccC----------------CHhHHhhCCEEEEEE
Confidence 367777 7788899889998887653 32 343333310 023577899998854
No 218
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=25.32 E-value=47 Score=30.36 Aligned_cols=19 Identities=5% Similarity=-0.111 Sum_probs=12.9
Q ss_pred hcchhhhhc--CCCEEEECCC
Q psy17159 101 YHKTWSDFC--KVDGIIVPGG 119 (326)
Q Consensus 101 ~~~~~~~l~--~~dglilpGG 119 (326)
|.+..+.|+ ++|.|+|+..
T Consensus 77 ~~~~~~ll~~~~vD~V~I~tp 97 (361)
T 3u3x_A 77 IATAEEILEDENIGLIVSAAV 97 (361)
T ss_dssp ESCHHHHHTCTTCCEEEECCC
T ss_pred cCCHHHHhcCCCCCEEEEeCC
Confidence 444555665 4899999764
No 219
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=25.32 E-value=99 Score=27.98 Aligned_cols=60 Identities=18% Similarity=0.149 Sum_probs=34.9
Q ss_pred HHHHHHhhcCCCCCCCeeeCCCCCcccccch----------hhhhcCCCceEEEEEcccCCCchhHHHHHHHHHHHhhhc
Q psy17159 6 SVRAKISMFCHVTPENVIFNPDVKPIYKVRM----------LRIDRLNKTVTIGLVGKYTKFEDCYASLTRALEHASYHS 75 (326)
Q Consensus 6 ~~~~ki~~~~~~~~~~v~~~~~~~~~y~~p~----------~~~~~~~~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~ 75 (326)
...+.+|.+++|| |||.-|. -.+-|. +.+. .-++++|+++||- ++..+.+++..+....
T Consensus 112 ~~~~~la~~~~vP---VINag~g--~~~HPtQ~LaDl~Ti~e~~g-~l~gl~va~vGD~-----~~~rva~Sl~~~~~~~ 180 (308)
T 1ml4_A 112 GAARLAAEVAEVP---VINAGDG--SNQHPTQTLLDLYTIKKEFG-RIDGLKIGLLGDL-----KYGRTVHSLAEALTFY 180 (308)
T ss_dssp THHHHHHHTCSSC---EEEEEET--TSCCHHHHHHHHHHHHHHSS-CSSSEEEEEESCT-----TTCHHHHHHHHHGGGS
T ss_pred hHHHHHHHhCCCC---EEeCccC--CccCcHHHHHHHHHHHHHhC-CCCCeEEEEeCCC-----CcCchHHHHHHHHHHC
Confidence 4567788888886 6776442 113343 1111 2346899999884 2334666666666554
Q ss_pred C
Q psy17159 76 N 76 (326)
Q Consensus 76 ~ 76 (326)
+
T Consensus 181 G 181 (308)
T 1ml4_A 181 D 181 (308)
T ss_dssp C
T ss_pred C
Confidence 3
No 220
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=25.31 E-value=1.9e+02 Score=24.94 Aligned_cols=85 Identities=13% Similarity=0.033 Sum_probs=44.7
Q ss_pred CceEEEEEcccCCCchhHHHHHHHHHHHhhhcCC----ceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEEC
Q psy17159 44 KTVTIGLVGKYTKFEDCYASLTRALEHASYHSNR----HLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVP 117 (326)
Q Consensus 44 ~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~----~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilp 117 (326)
++.+|||+-+.. .--+.++.+.++......+. .+.+...++.. ++.+-.+..+.+ ..+||||+.
T Consensus 7 ~t~~IGvi~~~~--~p~~~~~~~gi~~~l~~~Gy~~g~~v~l~~~~~~~--------~~~~~~~~~~~l~~~~vDgII~~ 76 (302)
T 2qh8_A 7 KTAKVAVSQIVE--HPALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQG--------NPAIAVQIARQFVGENPDVLVGI 76 (302)
T ss_dssp CCEEEEEEESSC--CHHHHHHHHHHHHHHHHTTCCBTTTEEEEEEECTT--------CHHHHHHHHHHHHHTCCSEEEEE
T ss_pred CCcEEEEEEecc--ChhHHHHHHHHHHHHHHcCCCCCCceEEEEecCCC--------CHHHHHHHHHHHHhCCCCEEEEC
Confidence 457899983221 12355677777666655544 66665555321 122111122233 479999998
Q ss_pred CCCCCCCCchHHHHHHHHHHcCCCEEEEe
Q psy17159 118 GGFGKRGLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 118 GG~~~~~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
|... ...+.. ...++|+.-+.
T Consensus 77 ~~~~-------~~~~~~-~~~~iPvV~~~ 97 (302)
T 2qh8_A 77 ATPT-------AQALVS-ATKTIPIVFTA 97 (302)
T ss_dssp SHHH-------HHHHHH-HCSSSCEEEEE
T ss_pred ChHH-------HHHHHh-cCCCcCEEEEe
Confidence 6321 112222 25689988765
No 221
>2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus}
Probab=25.08 E-value=35 Score=27.76 Aligned_cols=25 Identities=12% Similarity=0.247 Sum_probs=19.0
Q ss_pred eEEEEEcccCCCchhHHHHHHHHHHHh
Q psy17159 46 VTIGLVGKYTKFEDCYASLTRALEHAS 72 (326)
Q Consensus 46 ~~I~iigdyg~~~~~~~Si~~aL~~~g 72 (326)
+||+|+ |++..||-..+.+.|....
T Consensus 2 ~kilIi--Y~S~tGnT~~iA~~ia~~l 26 (182)
T 2wc1_A 2 AKIGLF--FGSDTGTTRKIAKQIKDMF 26 (182)
T ss_dssp CSEEEE--ECCSSSHHHHHHHHHHTTS
T ss_pred cEEEEE--EECCCchHHHHHHHHHHHh
Confidence 367777 7788899888888887643
No 222
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=24.64 E-value=1.6e+02 Score=25.04 Aligned_cols=38 Identities=11% Similarity=0.105 Sum_probs=26.4
Q ss_pred ceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEee
Q psy17159 45 TVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFD 85 (326)
Q Consensus 45 ~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~ 85 (326)
..+|.|+ |++..||-..+.+.|.... ..+..+.+..++
T Consensus 40 ~~kv~Il--YgS~tGnte~~A~~La~~l-~~g~~v~v~~l~ 77 (219)
T 3hr4_A 40 RVRVTIL--FATETGKSEALAWDLGALF-SCAFNPKVVCMD 77 (219)
T ss_dssp SCEEEEE--EECSSSHHHHHHHHHHHHH-TTTSEEEEEEGG
T ss_pred CCcEEEE--EECCchHHHHHHHHHHHHH-HcCCCeEEEEcc
Confidence 4578877 8888899999999998753 334444444443
No 223
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=24.61 E-value=88 Score=25.48 Aligned_cols=47 Identities=11% Similarity=-0.031 Sum_probs=30.9
Q ss_pred hcchhhhhcCCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEehh
Q psy17159 101 YHKTWSDFCKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLG 148 (326)
Q Consensus 101 ~~~~~~~l~~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIClG 148 (326)
|+...+.+..+|.+|.-- .|.....|..-.+-++.+.+|||++++-.
T Consensus 60 ~~~D~~~i~~aD~viA~l-dg~~~D~Gt~~EiG~A~a~gkPVi~~~~D 106 (162)
T 3ehd_A 60 ALADTENVLASDLLVALL-DGPTIDAGVASEIGVAYAKGIPVVALYTD 106 (162)
T ss_dssp HHHHHHHHHTCSEEEEEC-CSSSCCHHHHHHHHHHHHTTCCEEEECCC
T ss_pred HHHHHHHHHHCCEEEEEC-CCCCCCCCHHHHHHHHHHCCCEEEEEEcC
Confidence 333444577999987532 12223356666778888899999999743
No 224
>1agx_A Glutaminase-asparaginase; bacterial amidohydrolase; 2.90A {Acinetobacter glutaminasificans} SCOP: c.88.1.1
Probab=24.30 E-value=52 Score=30.12 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=27.4
Q ss_pred CCCEEEECC-CCCCCCCchHHHHHHHHH-HcCCCEEEE
Q psy17159 110 KVDGIIVPG-GFGKRGLEGKIAACKWAR-ENNKPFLGI 145 (326)
Q Consensus 110 ~~dglilpG-G~~~~~~~~~~~~i~~~~-~~~~PvLGI 145 (326)
.++||||-| |.|+-. ..+.+.|+++. ++++||.=+
T Consensus 239 g~~GiVle~~G~Gn~p-~~~~~~l~~a~~~~gi~VV~~ 275 (331)
T 1agx_A 239 GVKAIIHAGTGNGSMA-NYLVPEVRKLHDEQGLQIVRS 275 (331)
T ss_dssp TCSEEEEEEBTTTBCC-TTHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEeeECCCCCC-HHHHHHHHHHHHcCCCEEEEE
Confidence 589999998 777644 46788899998 889998644
No 225
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=23.97 E-value=1.4e+02 Score=24.99 Aligned_cols=71 Identities=15% Similarity=0.059 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCCCCchHHHHHHHHHH
Q psy17159 60 CYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKRGLEGKIAACKWARE 137 (326)
Q Consensus 60 ~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~~~~~~~~~i~~~~~ 137 (326)
-+..+...++....+.+..+.+..... ..+.. . +..+.+ ..+||||+.+..... ..++.+.+
T Consensus 13 ~~~~~~~gi~~~~~~~g~~~~~~~~~~-~~~~~-----~----~~~~~l~~~~vdgiI~~~~~~~~------~~~~~~~~ 76 (276)
T 2h0a_A 13 FYRRLVEGIEGVLLEQRYDLALFPILS-LARLK-----R----YLENTTLAYLTDGLILASYDLTE------RFEEGRLP 76 (276)
T ss_dssp HHHHHHHHHHHHHGGGTCEEEECCCCS-CCCCC------------------CCCSEEEEESCCCC------------CCS
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCC-chhhH-----H----HHHHHHHhCCCCEEEEecCCCCH------HHHHHHhh
Confidence 456688888887776665444322211 10000 0 011122 479999998743221 23344445
Q ss_pred cCCCEEEEe
Q psy17159 138 NNKPFLGIC 146 (326)
Q Consensus 138 ~~~PvLGIC 146 (326)
.++|+.-+.
T Consensus 77 ~~iPvV~~~ 85 (276)
T 2h0a_A 77 TERPVVLVD 85 (276)
T ss_dssp CSSCEEEES
T ss_pred cCCCEEEEe
Confidence 688987664
No 226
>2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway, aromatic amino acid biosynthesis, lyase, sulphonamide; HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A* 2xda_A* 1j2y_A* 2wks_A* 2xb9_A* 2c4v_A* 2xd9_A*
Probab=23.95 E-value=1.1e+02 Score=25.30 Aligned_cols=38 Identities=11% Similarity=0.220 Sum_probs=26.8
Q ss_pred ceEEEEE-------------cccCCCchhHHHHHHHHHHHhh--hcCCceEEEEeec
Q psy17159 45 TVTIGLV-------------GKYTKFEDCYASLTRALEHASY--HSNRHLQLKYFDS 86 (326)
Q Consensus 45 ~~~I~ii-------------gdyg~~~~~~~Si~~aL~~~g~--~~~~~v~~~~i~~ 86 (326)
+|+|.|| +-||. .++..+...++..+. ..+.+ +.+..+
T Consensus 9 ~M~IlvlNGPNLNlLG~REP~iYG~--~Tl~di~~~l~~~a~~~~~g~~--l~~~QS 61 (176)
T 2c4w_A 9 HMKILVIQGPNLNMLGHRDPRLYGM--VTLDQIHEIMQTFVKQGNLDVE--LEFFQT 61 (176)
T ss_dssp CEEEEEEECTTGGGBTTTBCGGGTS--CCHHHHHHHHHHHHHHTTCCEE--EEEEEC
T ss_pred ccEEEEEcCCCccccCCCCCCcCCc--CCHHHHHHHHHHHhccccCCCE--EEEEee
Confidence 4677777 34887 778999999999887 66544 444443
No 227
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=23.64 E-value=3.2e+02 Score=22.75 Aligned_cols=41 Identities=12% Similarity=0.034 Sum_probs=24.3
Q ss_pred CceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEee
Q psy17159 44 KTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFD 85 (326)
Q Consensus 44 ~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~ 85 (326)
++.+||++ --.....-+..+...++.+..+.+..+.+...+
T Consensus 4 ~~~~Igvi-~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~ 44 (280)
T 3gyb_A 4 RTQLIAVL-IDDYSNPWFIDLIQSLSDVLTPKGYRLSVIDSL 44 (280)
T ss_dssp CCCEEEEE-ESCTTSGGGHHHHHHHHHHHGGGTCEEEEECSS
T ss_pred ccCEEEEE-eCCCCChHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 34678888 221111346678888888877766655544433
No 228
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=23.43 E-value=37 Score=27.76 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=15.8
Q ss_pred cCCCEEEECCCCCCCCCchHHHHHH
Q psy17159 109 CKVDGIIVPGGFGKRGLEGKIAACK 133 (326)
Q Consensus 109 ~~~dglilpGG~~~~~~~~~~~~i~ 133 (326)
..+|.||.+||-|.....-..+++.
T Consensus 80 ~~~DlVittGG~g~~~~D~t~ea~~ 104 (178)
T 3iwt_A 80 DEVDVIISTGGTGYSPTDITVETIR 104 (178)
T ss_dssp TTCCEEEEESCCSSSTTCCHHHHHG
T ss_pred CCCCEEEecCCcccCCCCchHHHHH
Confidence 4689999999866544333334443
No 229
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=23.39 E-value=2.5e+02 Score=24.43 Aligned_cols=87 Identities=16% Similarity=-0.011 Sum_probs=45.7
Q ss_pred ceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecc-cccCCCCCCCchhhcchhhhhcCCCEEEECCCCCCC
Q psy17159 45 TVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSE-LLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKR 123 (326)
Q Consensus 45 ~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~-~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~~~~ 123 (326)
..+|+|+++-+. .+-....+.++.+....+.++....+... ++. +.......+.|+|+++.....
T Consensus 140 ~k~vgvi~~~~~--~~s~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~-----------~~~~~l~~~~d~i~~~~d~~~- 205 (302)
T 3lkv_A 140 VKSIGVVYNPGE--ANAVSLMELLKLSAAKHGIKLVEATALKSADVQ-----------SATQAIAEKSDVIYALIDNTV- 205 (302)
T ss_dssp CCEEEEEECTTC--HHHHHHHHHHHHHHHHTTCEEEEEECSSGGGHH-----------HHHHHHHTTCSEEEECSCHHH-
T ss_pred CCEEEEEeCCCc--ccHHHHHHHHHHHHHHcCCEEEEEecCChHHHH-----------HHHHhccCCeeEEEEeCCcch-
Confidence 358999955332 45455566677766666555443333321 111 001223368899998753110
Q ss_pred CCchHHHHHHHHHHcCCCEEEEe
Q psy17159 124 GLEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 124 ~~~~~~~~i~~~~~~~~PvLGIC 146 (326)
......+...+...++|++|.-
T Consensus 206 -~~~~~~i~~~~~~~~iPv~~~~ 227 (302)
T 3lkv_A 206 -ASAIEGMIVAANQAKTPVFGAA 227 (302)
T ss_dssp -HHTHHHHHHHHHHTTCCEEESS
T ss_pred -hhHHHHHHHHHhhcCCceeecc
Confidence 1112223344556799999854
No 230
>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}
Probab=23.05 E-value=2.6e+02 Score=25.31 Aligned_cols=94 Identities=10% Similarity=-0.071 Sum_probs=46.3
Q ss_pred ceEEEEEcccCCCchhHHH-HHHHHHHHhhh---cCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECCCC
Q psy17159 45 TVTIGLVGKYTKFEDCYAS-LTRALEHASYH---SNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGF 120 (326)
Q Consensus 45 ~~~I~iigdyg~~~~~~~S-i~~aL~~~g~~---~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpGG~ 120 (326)
+++|+|+ -+| +..+ +.+.|...... .+..+++..+-....+...-......|++..+.+ +.|.|++.-|.
T Consensus 3 ~irvgIi-G~G----~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~~~~~~~~~d~~~ll-~iDvVve~t~~ 76 (332)
T 2ejw_A 3 ALKIALL-GGG----TVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPRAIPQELLRAEPFDLL-EADLVVEAMGG 76 (332)
T ss_dssp EEEEEEE-CCS----HHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCCSSCGGGEESSCCCCT-TCSEEEECCCC
T ss_pred eeEEEEE-cCC----HHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhhccCcccccCCHHHHh-CCCEEEECCCC
Confidence 4799999 444 4443 55566544311 1224455544332222110000111122233344 78999887432
Q ss_pred CCCCCchHHHHHHHHHHcCCCEEEEehh
Q psy17159 121 GKRGLEGKIAACKWARENNKPFLGICLG 148 (326)
Q Consensus 121 ~~~~~~~~~~~i~~~~~~~~PvLGIClG 148 (326)
. ....+.++.+++.++.|+-.+-+
T Consensus 77 ~----~~a~~~~~~AL~aGKhVVtaNkk 100 (332)
T 2ejw_A 77 V----EAPLRLVLPALEAGIPLITANKA 100 (332)
T ss_dssp S----HHHHHHHHHHHHTTCCEEECCHH
T ss_pred c----HHHHHHHHHHHHcCCeEEECCch
Confidence 1 22345667777888888764443
No 231
>4pga_A Glutaminase-asparaginase; bacterial amidohydrolase; 1.70A {Pseudomonas SP} SCOP: c.88.1.1 PDB: 1djp_A* 1djo_A* 3pga_1
Probab=23.01 E-value=53 Score=30.21 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=27.3
Q ss_pred CCCEEEECC-CCCCCCCchHHHHHHHHHHcCCCEEEE
Q psy17159 110 KVDGIIVPG-GFGKRGLEGKIAACKWARENNKPFLGI 145 (326)
Q Consensus 110 ~~dglilpG-G~~~~~~~~~~~~i~~~~~~~~PvLGI 145 (326)
.++||||-| |.|+-. ..+.+.|+++.++++||.=+
T Consensus 245 g~~GiVle~~G~Gn~p-~~~~~~l~~a~~~Gi~VV~~ 280 (337)
T 4pga_A 245 GAKALIHAGTGNGSVS-SRVVPALQQLRKNGTQIIRS 280 (337)
T ss_dssp TCSEEEEEEBTTTBCC-TTTHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEEEEeCCCCCC-HHHHHHHHHHHHCCCEEEEe
Confidence 589999988 777543 25678899999999998755
No 232
>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1
Probab=22.67 E-value=55 Score=26.48 Aligned_cols=53 Identities=11% Similarity=0.132 Sum_probs=32.1
Q ss_pred EEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEECC
Q psy17159 47 TIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPG 118 (326)
Q Consensus 47 ~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilpG 118 (326)
||+|+ |++..||-..+.+.|...... +..+++.-+.. . ..+.+.++|.|||..
T Consensus 2 kilI~--Y~S~tGnT~~iA~~ia~~l~~-~~~v~~~~~~~-----~-----------~~~~l~~~d~iilg~ 54 (179)
T 1yob_A 2 KIGLF--FGSNTGKTRKVAKSIKKRFDD-ETMSDALNVNR-----V-----------SAEDFAQYQFLILGT 54 (179)
T ss_dssp CEEEE--ECCSSSHHHHHHHHHHTTSCT-TTBCCCEEGGG-----C-----------CHHHHHTCSEEEEEE
T ss_pred eEEEE--EECCCcHHHHHHHHHHHHhCC-CCceEEEEhhh-----C-----------CHHHHhcCCEEEEEe
Confidence 57777 778889998899888764322 22233322221 0 123577899998854
No 233
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A
Probab=22.27 E-value=2.4e+02 Score=22.91 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=15.5
Q ss_pred ceEEEEEcccCCCchhHHHHHHHHHHH
Q psy17159 45 TVTIGLVGKYTKFEDCYASLTRALEHA 71 (326)
Q Consensus 45 ~~~I~iigdyg~~~~~~~Si~~aL~~~ 71 (326)
++||++++|.- +++..+.+.++.+
T Consensus 25 ~m~i~~iSD~H---g~~~~l~~~l~~~ 48 (190)
T 1s3l_A 25 HMKIGIMSDTH---DHLPNIRKAIEIF 48 (190)
T ss_dssp -CEEEEECCCT---TCHHHHHHHHHHH
T ss_pred CeEEEEEeeCC---CCHHHHHHHHHHH
Confidence 38999997764 5666555555443
No 234
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=21.74 E-value=3.2e+02 Score=22.05 Aligned_cols=42 Identities=12% Similarity=0.168 Sum_probs=29.8
Q ss_pred hcchhhhhcCCCEEEE--CCCCCCCCCchHHHHHHHHHHcCCCEEEE
Q psy17159 101 YHKTWSDFCKVDGIIV--PGGFGKRGLEGKIAACKWARENNKPFLGI 145 (326)
Q Consensus 101 ~~~~~~~l~~~dglil--pGG~~~~~~~~~~~~i~~~~~~~~PvLGI 145 (326)
|+...+.|..+|.+|. -|. ....|..-.|-++...+|||+++
T Consensus 72 ~~~D~~~i~~aD~vVA~ldg~---~~D~GTa~EiGyA~algKPVv~l 115 (167)
T 1s2d_A 72 YQNDLTGISNATCGVFLYDMD---QLDDGSAFXIGFMRAMHKPVILV 115 (167)
T ss_dssp HHHHHHHHHHCSEEEEEEESS---SCCHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHhCCEEEEECCCC---CCCCCceeehhhHhhCCCeEEEE
Confidence 3344456779999976 542 23357677777888999999998
No 235
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=21.70 E-value=1.4e+02 Score=27.79 Aligned_cols=71 Identities=10% Similarity=0.039 Sum_probs=39.3
Q ss_pred HHHHHHHhhcCCCCCCCeeeCCCCCcccccch----------hhhhcCCCceEEEEEcccCCCchhHHHHHHHHHHHhhh
Q psy17159 5 ESVRAKISMFCHVTPENVIFNPDVKPIYKVRM----------LRIDRLNKTVTIGLVGKYTKFEDCYASLTRALEHASYH 74 (326)
Q Consensus 5 ~~~~~ki~~~~~~~~~~v~~~~~~~~~y~~p~----------~~~~~~~~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~ 74 (326)
....+.+|.+++|| |||.-+ -.+-|. +.+.. -+++||++|||.. | ++.+++..+...
T Consensus 137 ~~~~~~lA~~s~vP---VINa~~---~~~HPtQaLaDl~Ti~E~~G~-l~glkva~vGD~~----n--nva~Sl~~~~~~ 203 (365)
T 4amu_A 137 QSDVDALVKYSGVP---VWNGLT---DDEHPTQIIADFMTMKEKFGN-LKNKKIVFIGDYK----N--NVGVSTMIGAAF 203 (365)
T ss_dssp HHHHHHHHHHHCSC---EEEEEC---SSCCHHHHHHHHHHHHHHHSS-CTTCEEEEESSTT----S--HHHHHHHHHHHH
T ss_pred hhHHHHHHHhCCCC---EEeCCC---CCCCcHHHHHHHHHHHHHhCC-CCCCEEEEECCCC----c--chHHHHHHHHHH
Confidence 34567788899997 666532 224454 12222 3568999999852 1 345555555544
Q ss_pred cCCceEEEEeeccccc
Q psy17159 75 SNRHLQLKYFDSELLS 90 (326)
Q Consensus 75 ~~~~v~~~~i~~~~l~ 90 (326)
.+. ++..+.|..+.
T Consensus 204 lG~--~v~~~~P~~~~ 217 (365)
T 4amu_A 204 NGM--HVVMCGPDNYK 217 (365)
T ss_dssp TTC--EEEEESCGGGG
T ss_pred cCC--EEEEECCcccc
Confidence 443 34444444443
No 236
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=21.68 E-value=2.5e+02 Score=25.30 Aligned_cols=59 Identities=17% Similarity=0.088 Sum_probs=35.3
Q ss_pred HHHHHHHhhcCCCCCCCeeeCCCCCcccccch----------hhhhcCCCceEEEEEcccCCCchhHHHHHHHHHHHhh
Q psy17159 5 ESVRAKISMFCHVTPENVIFNPDVKPIYKVRM----------LRIDRLNKTVTIGLVGKYTKFEDCYASLTRALEHASY 73 (326)
Q Consensus 5 ~~~~~ki~~~~~~~~~~v~~~~~~~~~y~~p~----------~~~~~~~~~~~I~iigdyg~~~~~~~Si~~aL~~~g~ 73 (326)
....+.+|.+++|| |||.-| . .+.|. +.+. .-++++|+++||.+ ..-+|.+.++...|.
T Consensus 112 ~~~~~~lA~~~~vP---VINa~~--~-~~HPtQaLaDl~Ti~e~~g-~l~gl~va~vGD~~---rva~Sl~~~~~~~g~ 180 (315)
T 1pvv_A 112 HKDVEDLAKYATVP---VINGLS--D-FSHPCQALADYMTIWEKKG-TIKGVKVVYVGDGN---NVAHSLMIAGTKLGA 180 (315)
T ss_dssp HHHHHHHHHHCSSC---EEEEEC--S-SCCHHHHHHHHHHHHHHHS-CCTTCEEEEESCCC---HHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHhCCCC---EEcCCC--C-CCCcHHHHHHHHHHHHHhC-CcCCcEEEEECCCc---chHHHHHHHHHHCCC
Confidence 45567788888886 666644 2 46665 2222 23468999999952 344555555544443
No 237
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=21.60 E-value=1.3e+02 Score=28.14 Aligned_cols=62 Identities=8% Similarity=0.085 Sum_probs=39.4
Q ss_pred ceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhhcCCCEEEEC
Q psy17159 45 TVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVP 117 (326)
Q Consensus 45 ~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~dglilp 117 (326)
..+|+|+ |++-.||-..+.++|.+...+.+..+.++.+...+- .+. .++.+.+.++|+|||.
T Consensus 265 ~~~v~I~--Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~------~~~---s~i~~~i~~~~~ivlG 326 (410)
T 4dik_A 265 KGKVTVI--YDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEER------PAI---SEILKDIPDSEALIFG 326 (410)
T ss_dssp TTEEEEE--EECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCC------CCH---HHHHHHSTTCSEEEEE
T ss_pred ccceeeE--EecccChHHHHHHHHHHHHHhcCCceEEEEeccCCC------CCH---HHHHHHHHhCCeEEEE
Confidence 3478887 777788888888888876666666655544432110 011 1234567799999984
No 238
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=20.94 E-value=18 Score=31.80 Aligned_cols=35 Identities=34% Similarity=0.484 Sum_probs=25.1
Q ss_pred cCCCEEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEehhH
Q psy17159 109 CKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGL 149 (326)
Q Consensus 109 ~~~dglilpGG~~~~~~~~~~~~i~~~~~~~~PvLGIClG~ 149 (326)
..+|.||.-||-| -+..+++.+.. ++|+|||=.|.
T Consensus 40 ~~~D~vv~~GGDG-----Tll~~a~~~~~-~~PilGIn~G~ 74 (258)
T 1yt5_A 40 VTADLIVVVGGDG-----TVLKAAKKAAD-GTPMVGFKAGR 74 (258)
T ss_dssp BCCSEEEEEECHH-----HHHHHHTTBCT-TCEEEEEESSS
T ss_pred CCCCEEEEEeCcH-----HHHHHHHHhCC-CCCEEEEECCC
Confidence 4789999999843 24455555545 89999998774
No 239
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=20.86 E-value=3.2e+02 Score=22.92 Aligned_cols=66 Identities=15% Similarity=0.200 Sum_probs=34.9
Q ss_pred CCceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCC
Q psy17159 43 NKTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGF 120 (326)
Q Consensus 43 ~~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~ 120 (326)
+++.+||++-. . ...-+.++...++.+....+..+.+. +... ++..-.+..+.+ ..+||||+.+..
T Consensus 6 ~~~~~Igvi~~-~-~~~~~~~~~~gi~~~~~~~g~~~~~~--~~~~--------~~~~~~~~~~~l~~~~vdgiI~~~~~ 73 (288)
T 2qu7_A 6 GRSNIIAFIVP-D-QNPFFTEVLTEISHECQKHHLHVAVA--SSEE--------NEDKQQDLIETFVSQNVSAIILVPVK 73 (288)
T ss_dssp -CEEEEEEEES-S-CCHHHHHHHHHHHHHHGGGTCEEEEE--ECTT--------CHHHHHHHHHHHHHTTEEEEEECCSS
T ss_pred CCCCEEEEEEC-C-CCchHHHHHHHHHHHHHHCCCEEEEE--eCCC--------CHHHHHHHHHHHHHcCccEEEEecCC
Confidence 34568988822 1 12346678888888777666554443 3210 111111112222 478999998753
No 240
>1wls_A L-asparaginase; structural genomics, hydrolase; 2.16A {Pyrococcus horikoshii} PDB: 1wnf_A
Probab=20.46 E-value=85 Score=28.63 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=26.6
Q ss_pred CCCEEEECC-CCCCCCC--chHHHHHHHHHHcCCCEEEE
Q psy17159 110 KVDGIIVPG-GFGKRGL--EGKIAACKWARENNKPFLGI 145 (326)
Q Consensus 110 ~~dglilpG-G~~~~~~--~~~~~~i~~~~~~~~PvLGI 145 (326)
.++||||-| |.|+-.. ..+.+.|+++.++ +||.=+
T Consensus 223 g~~GiVle~~G~Gn~p~~~~~~~~~l~~a~~~-i~VV~~ 260 (328)
T 1wls_A 223 GYKGIILEGYGVGGIPYRGTDLFEVVSSISKR-IPVVLT 260 (328)
T ss_dssp TCSEEEEEESSSCCCCCSSSSHHHHHHHHTTT-SCEEEE
T ss_pred CCCEEEEeeeCCCCCCCCcHHHHHHHHHHhcC-CeEEEe
Confidence 579999998 7776432 4678889998888 998654
No 241
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=20.33 E-value=1.2e+02 Score=26.67 Aligned_cols=64 Identities=9% Similarity=0.150 Sum_probs=34.7
Q ss_pred CceEEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCC
Q psy17159 44 KTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGG 119 (326)
Q Consensus 44 ~~~~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG 119 (326)
++.+||++ --.....-+..+...++....+.+..+.+...+. . ..-.+..+.+ ..+||||+.+.
T Consensus 63 ~~~~Igvi-~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~----------~~~~~~~~~l~~~~vdGiIi~~~ 128 (333)
T 3jvd_A 63 RSALVGVI-VPDLSNEYYSESLQTIQQDLKAAGYQMLVAEANS-V----------QAQDVVMESLISIQAAGIIHVPV 128 (333)
T ss_dssp -CCEEEEE-ESCSSSHHHHHHHHHHHHHHHHHTCEEEEEECCS-H----------HHHHHHHHHHHHHTCSEEEECCC
T ss_pred CCCEEEEE-eCCCcChHHHHHHHHHHHHHHHCCCEEEEECCCC-h----------HHHHHHHHHHHhCCCCEEEEcch
Confidence 34578888 2222113456688888887776666555544332 0 0000112223 47999999875
No 242
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=20.26 E-value=3.6e+02 Score=22.67 Aligned_cols=87 Identities=10% Similarity=0.067 Sum_probs=42.1
Q ss_pred EEEEEcccCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCCCchhhcchhhhh--cCCCEEEECCCCCCCC
Q psy17159 47 TIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDF--CKVDGIIVPGGFGKRG 124 (326)
Q Consensus 47 ~I~iigdyg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~~~~~~~~~~~~l--~~~dglilpGG~~~~~ 124 (326)
+|+++ --.....-|..+...++......+..+.+....+.. ++..-.+..+.+ ..+||||+.+... .
T Consensus 3 ~Igvi-~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~vdgiIi~~~~~-~- 71 (288)
T 1gud_A 3 EYAVV-LKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEG--------DFQSQLQLFEDLSNKNYKGIAFAPLSS-V- 71 (288)
T ss_dssp EEEEE-ESCSSSHHHHHHHHHHHHHHHHHTCCEEEEECSSTT--------CHHHHHHHHHHHHTSSEEEEEECCSSS-S-
T ss_pred EEEEE-eCCCCchHHHHHHHHHHHHHHHcCCEEEEeCCCCCC--------CHHHHHHHHHHHHHcCCCEEEEeCCCh-H-
Confidence 57766 211111235567777777766665554443211110 111000011222 4689999976421 1
Q ss_pred CchHHHHHHHHHHcCCCEEEEe
Q psy17159 125 LEGKIAACKWARENNKPFLGIC 146 (326)
Q Consensus 125 ~~~~~~~i~~~~~~~~PvLGIC 146 (326)
.....++.+.+.++|+.-+.
T Consensus 72 --~~~~~~~~~~~~~iPvV~~~ 91 (288)
T 1gud_A 72 --NLVMPVARAWKKGIYLVNLD 91 (288)
T ss_dssp --TTHHHHHHHHHTTCEEEEES
T ss_pred --HHHHHHHHHHHCCCeEEEEC
Confidence 11234555666789987653
No 243
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=20.24 E-value=3e+02 Score=23.56 Aligned_cols=37 Identities=19% Similarity=0.075 Sum_probs=21.2
Q ss_pred hhcCCCEEEECCCCCCCCCchHHHHH-HHHHHcCCCEEEEe
Q psy17159 107 DFCKVDGIIVPGGFGKRGLEGKIAAC-KWARENNKPFLGIC 146 (326)
Q Consensus 107 ~l~~~dglilpGG~~~~~~~~~~~~i-~~~~~~~~PvLGIC 146 (326)
.+..+|+|+.+... -..+.+..+ +.....++||+|.=
T Consensus 190 l~~~~dai~~~~D~---~a~g~~~~l~~~~~~~~i~vig~d 227 (302)
T 2qh8_A 190 IAEKSDVIYALIDN---TVASAIEGMIVAANQAKTPVFGAA 227 (302)
T ss_dssp HGGGCSEEEECSCH---HHHTTHHHHHHHHHHTTCCEEESS
T ss_pred HhccCCEEEECCcH---hHHHHHHHHHHHHHHcCCCEEECC
Confidence 34688999987421 011223333 34445789999853
No 244
>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}
Probab=20.09 E-value=1.5e+02 Score=26.59 Aligned_cols=66 Identities=12% Similarity=0.031 Sum_probs=35.0
Q ss_pred CCceEEEEEcc--cCCCchhHHHHHHHHHHHhhhcCCceEEEEeecccccCCCCCC-CchhhcchhhhhcCCCEEEEC
Q psy17159 43 NKTVTIGLVGK--YTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTG-NMAEYHKTWSDFCKVDGIIVP 117 (326)
Q Consensus 43 ~~~~~I~iigd--yg~~~~~~~Si~~aL~~~g~~~~~~v~~~~i~~~~l~~~~~~~-~~~~~~~~~~~l~~~dglilp 117 (326)
-++++|+++|| ++ ..-+|.+.++...|. ++..+.+..+.+..+.. .-..+++..+.++++|.|...
T Consensus 144 l~gl~va~vGDl~~~---rva~Sl~~~~~~~g~------~v~~~~P~~~~p~~~~~~g~~~~~d~~eav~~aDvvy~~ 212 (291)
T 3d6n_B 144 VKDLRVLYVGDIKHS---RVFRSGAPLLNMFGA------KIGVCGPKTLIPRDVEVFKVDVFDDVDKGIDWADVVIWL 212 (291)
T ss_dssp CTTCEEEEESCCTTC---HHHHHHHHHHHHTTC------EEEEESCGGGSCTTGGGGCEEEESSHHHHHHHCSEEEEC
T ss_pred cCCcEEEEECCCCCC---chHHHHHHHHHHCCC------EEEEECCchhCCchHHHCCCEEEcCHHHHhCCCCEEEEe
Confidence 35689999999 43 345566655555544 34455555544321100 001123334567788887763
Done!