RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17159
(326 letters)
>gnl|CDD|235437 PRK05380, pyrG, CTP synthetase; Validated.
Length = 533
Score = 374 bits (963), Expect = e-127
Identities = 147/327 (44%), Positives = 192/327 (58%), Gaps = 48/327 (14%)
Query: 4 TESVRAKISMFCHVTPENVIFNPDVKPIYKV-RMLR--------IDRLN----------- 43
E + KI++FC+V E VI PDV IY+V +L ++RL
Sbjct: 216 PEEEKRKIALFCNVPEEAVISAPDVDSIYEVPLLLHEQGLDDIVLERLGLEAPEPDLSEW 275
Query: 44 -----------KTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMD 92
VTI LVGKY + D Y S+ AL+HA ++ + +K+ DSE L
Sbjct: 276 EELVERLKNPKGEVTIALVGKYVELPDAYKSVIEALKHAGIANDVKVNIKWIDSEDL--- 332
Query: 93 PKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGLQAA 152
+ N+AE K VDGI+VPGGFG+RG+EGKI A ++ARENN PFLGICLG+Q A
Sbjct: 333 -EEENVAELLK------GVDGILVPGGFGERGIEGKILAIRYARENNIPFLGICLGMQLA 385
Query: 153 VIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPE-HNPGNMGGTMRLGKHETHFKPEH 211
VIE+ R+VLGL+DA++ E P T HPV+ MPE + ++GGTMRLG + KP
Sbjct: 386 VIEFARNVLGLEDANSTEFDP--DT-PHPVIDLMPEQKDVSDLGGTMRLGAYPCKLKPG- 441
Query: 212 KSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYY 271
+ +YG K++I ERHRHRYEVN KY EK G +F+G +EI EL DHP++
Sbjct: 442 -TLAAEIYG-KEEIYERHRHRYEVNNKYREQLEKAGLVFSGTSPDGRLVEIVELPDHPWF 499
Query: 272 VAVQFHPEYLSRPLRPSPPFLGLILAA 298
V VQFHPE+ SRP RP P F G + AA
Sbjct: 500 VGVQFHPEFKSRPRRPHPLFAGFVKAA 526
>gnl|CDD|215186 PLN02327, PLN02327, CTP synthase.
Length = 557
Score = 365 bits (940), Expect = e-124
Identities = 153/335 (45%), Positives = 195/335 (58%), Gaps = 37/335 (11%)
Query: 5 ESVRAKISMFCHVTPENVIFNPDVKPIYKVRML--------------------------- 37
E+V+ K+S FCHV EN++ DV I+ V +L
Sbjct: 224 ENVKEKLSQFCHVPAENILNLHDVSNIWHVPLLLRDQKAHEAILKVLNLLSVAREPDLEE 283
Query: 38 ------RIDRLNKTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSM 91
D L + V I +VGKYT D Y S+ +AL HAS +R L + + + L
Sbjct: 284 WTARAESCDNLTEPVRIAMVGKYTGLSDSYLSVLKALLHASVACSRKLVIDWVAASDLED 343
Query: 92 DPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGLQA 151
+ Y W DGI+VPGGFG RG+EGKI A K+AREN P+LGICLG+Q
Sbjct: 344 ETAKETPDAYAAAWKLLKGADGILVPGGFGDRGVEGKILAAKYARENKVPYLGICLGMQI 403
Query: 152 AVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHETHFKPEH 211
AVIE+ RSVLGLKDA++ E P +T +P V++MPE + +MGGTMRLG T+F+
Sbjct: 404 AVIEFARSVLGLKDANSTEFDP--ET-PNPCVIFMPEGSKTHMGGTMRLGSRRTYFQTPD 460
Query: 212 KSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYY 271
K LYGN ++ERHRHRYEVN + VP EK G F G DE RMEI EL HP++
Sbjct: 461 -CKSAKLYGNVSFVDERHRHRYEVNPEMVPRLEKAGLSFVGKDETGRRMEIVELPSHPFF 519
Query: 272 VAVQFHPEYLSRPLRPSPPFLGLILAAAGKLDAYI 306
V VQFHPE+ SRP +PSP FLGLI AA+G+LDA +
Sbjct: 520 VGVQFHPEFKSRPGKPSPLFLGLIAAASGQLDAVL 554
>gnl|CDD|223578 COG0504, PyrG, CTP synthase (UTP-ammonia lyase) [Nucleotide
transport and metabolism].
Length = 533
Score = 363 bits (934), Expect = e-123
Identities = 149/329 (45%), Positives = 187/329 (56%), Gaps = 48/329 (14%)
Query: 4 TESVRAKISMFCHVTPENVIFNPDVKPIYKVRML-------------------------- 37
E R KI++FC+V E VI PDV+ IY+V +L
Sbjct: 216 PEEERRKIALFCNVPEEAVISAPDVESIYEVPLLLEKQGLDDYILERLNLNAPEPDLSEW 275
Query: 38 -----RIDRLNKTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMD 92
+I K VTI LVGKY + D Y S+ AL+HA + +K+ DSE D
Sbjct: 276 KDLVDKIKNPKKEVTIALVGKYVELPDAYKSVIEALKHAGIALGVKVNIKWIDSE----D 331
Query: 93 PKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGLQAA 152
+ N AE K VDGI+VPGGFG RG+EGKIAA ++ARENN PFLGICLG+Q A
Sbjct: 332 LEEENAAELEK------LVDGILVPGGFGYRGVEGKIAAIRYARENNIPFLGICLGMQLA 385
Query: 153 VIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGN-MGGTMRLGKHETHFKPEH 211
VIE+ R+VLGL+ A++ E P ++PVV MPE +GGTMRLG + KP
Sbjct: 386 VIEFARNVLGLEGANSTEFDPDT---KYPVVDLMPEQKDVVDLGGTMRLGAYPCRLKP-- 440
Query: 212 KSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYY 271
+ LYG KD+I ERHRHRYEVN Y EK G +F+G +EI EL DHP++
Sbjct: 441 GTLAAKLYG-KDEIYERHRHRYEVNNDYRDQLEKAGLVFSGTSPDGGLVEIVELPDHPFF 499
Query: 272 VAVQFHPEYLSRPLRPSPPFLGLILAAAG 300
VA QFHPE+ SRPLRP P F+G + AA
Sbjct: 500 VATQFHPEFKSRPLRPHPLFVGFVKAALE 528
>gnl|CDD|153217 cd01746, GATase1_CTP_Synthase, Type 1 glutamine amidotransferase
(GATase1) domain found in Cytidine Triphosphate
Synthetase. Type 1 glutamine amidotransferase (GATase1)
domain found in Cytidine Triphosphate Synthetase (CTP).
CTP is involved in pyrimidine
ribonucleotide/ribonucleoside metabolism. CTPs produce
CTP from UTP and glutamine and regulate intracellular
CTP levels through interactions with four ribonucleotide
triphosphates. The enzyme exists as a dimer of identical
chains that aggregates as a tetramer. CTP is derived
form UTP in three separate steps involving two active
sites. In one active site, the UTP O4 oxygen is
activated by Mg-ATP-dependent phosphorylation, followed
by displacement of the resulting 4-phosphate moiety by
ammonia. At a separate site, ammonia is generated via
rate limiting glutamine hydrolysis (glutaminase)
activity. A gated channel that spans between the
glutamine hydrolysis and amidoligase active sites
provides a path for ammonia diffusion. CTPs belong to
the triad family of amidotransferases having a conserved
Cys-His-Glu catalytic triad in the glutaminase active
site.
Length = 235
Score = 349 bits (899), Expect = e-122
Identities = 123/251 (49%), Positives = 155/251 (61%), Gaps = 17/251 (6%)
Query: 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTW 105
V I LVGKY + D Y S+ AL+HA L++K+ DSE L +
Sbjct: 1 VRIALVGKYVELPDAYLSVLEALKHAGIALGVKLEIKWIDSEDLEEENA----------E 50
Query: 106 SDFCKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKD 165
DGI+VPGGFG RG+EGKI A K+ARENN PFLGICLG+Q AVIE+ R+VLGL D
Sbjct: 51 EALKGADGILVPGGFGIRGVEGKILAIKYARENNIPFLGICLGMQLAVIEFARNVLGLPD 110
Query: 166 ADTEEEQPPGQTLEHPVVVYMPE-HNPGNMGGTMRLGKHETHFKPEHKSKLKLLYGNKDK 224
A++ E P HPVV MPE ++GGTMRLG + KP + YG KD+
Sbjct: 111 ANSTEFDP---DTPHPVVDLMPEQKGVKDLGGTMRLGAYPVILKP--GTLAHKYYG-KDE 164
Query: 225 IEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPEYLSRP 284
+EERHRHRYEVN +YV + E+ G F+G D +EI EL DHP++V QFHPE+ SRP
Sbjct: 165 VEERHRHRYEVNPEYVDELEEAGLRFSGTDPDGGLVEIVELPDHPFFVGTQFHPEFKSRP 224
Query: 285 LRPSPPFLGLI 295
L+P P F+G +
Sbjct: 225 LKPHPLFVGFV 235
>gnl|CDD|232926 TIGR00337, PyrG, CTP synthase. CTP synthase is involved in
pyrimidine ribonucleotide/ribonucleoside metabolism. The
enzyme catalyzes the reaction L-glutamine + H2O + UTP +
ATP = CTP + phosphate + ADP + L-glutamate. The enzyme
exists as a dimer of identical chains that aggregates as
a tetramer. This gene has been found circa 500 bp 5'
upstream of enolase in both beta (Nitrosomonas europaea)
and gamma (E.coli) subdivisions of proteobacterium (FEMS
Microbiol Lett 1998 Aug 1;165(1):153-7) [Purines,
pyrimidines, nucleosides, and nucleotides, Pyrimidine
ribonucleotide biosynthesis].
Length = 525
Score = 331 bits (850), Expect = e-110
Identities = 139/326 (42%), Positives = 184/326 (56%), Gaps = 49/326 (15%)
Query: 4 TESVRAKISMFCHVTPENVIFNPDVKPIYKVRML-------------------------- 37
S + KI++FC V E VI DV IY+V +L
Sbjct: 217 DPSTKDKIALFCDVEEEAVINAHDVSSIYEVPLLLLKQGLDDYLCRRLNLNCDEADLSEW 276
Query: 38 -----RIDRLNKTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMD 92
+ VTIG+VGKY + +D Y S+ AL+HA + + +K+ DSE L +
Sbjct: 277 EELVEKFINPKHEVTIGIVGKYVELKDSYLSVIEALKHAGAKLDTKVNIKWIDSEDL--E 334
Query: 93 PKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGLQAA 152
+ AE+ K VDGI+VPGGFG+RG+EGKI A K+ARENN PFLGICLG+Q A
Sbjct: 335 EEG---AEFLK------GVDGILVPGGFGERGVEGKILAIKYARENNIPFLGICLGMQLA 385
Query: 153 VIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNP-GNMGGTMRLGKHETHFKPEH 211
VIE+ R+VLGLK A++ E P ++PVV +PE ++GGTMRLG + KP
Sbjct: 386 VIEFARNVLGLKGANSTEFDP---ETKYPVVDLLPEQKDISDLGGTMRLGLYPCILKPG- 441
Query: 212 KSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYY 271
+ LYG K+++ ERHRHRYEVN +Y E G + +G +EI EL DHP++
Sbjct: 442 -TLAFKLYG-KEEVYERHRHRYEVNNEYREQLENKGLIVSGTSPDGRLVEIIELPDHPFF 499
Query: 272 VAVQFHPEYLSRPLRPSPPFLGLILA 297
VA QFHPE+ SRP RP P FLG + A
Sbjct: 500 VACQFHPEFTSRPNRPHPLFLGFVKA 525
>gnl|CDD|215729 pfam00117, GATase, Glutamine amidotransferase class-I.
Length = 186
Score = 141 bits (357), Expect = 4e-41
Identities = 59/240 (24%), Positives = 74/240 (30%), Gaps = 58/240 (24%)
Query: 59 DCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPG 118
D S T L A +++ D+ + DGII+
Sbjct: 4 DNGDSFTYNLARALRELGVEVEVVPNDTPAEEILEL---------------NPDGIIISP 48
Query: 119 GFGKRG-LEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQT 177
G G G L G I A K REN P LGICLG Q + +G V+
Sbjct: 49 GPGSPGALGGAIEAIKELRENKIPILGICLGHQLLALAFGGKVI---------------- 92
Query: 178 LEHPVVVYMPEHNPGNMGGTMRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNK 237
+ G +G H K L YG + R H Y V+
Sbjct: 93 ---------KAKKEPHHGKNSPVG----HDKG-------LFYGLPNVFIVRRYHSYAVDP 132
Query: 238 KYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPEYLSRPLRPSPPFLGLILA 297
+PD G T E M I + VQFHPE P P F I
Sbjct: 133 DTLPD----GLEVTAASENGGIMAIRHKENP--IFGVQFHPESSLTPGGPELLFNFFIKL 186
>gnl|CDD|180452 PRK06186, PRK06186, hypothetical protein; Validated.
Length = 229
Score = 116 bits (294), Expect = 3e-31
Identities = 75/258 (29%), Positives = 112/258 (43%), Gaps = 30/258 (11%)
Query: 45 TVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKT 104
T+ I LVG Y + ++ AL+ A+ + ++ + + ++A +
Sbjct: 1 TLRIALVGDYNPDVTAHQAIPLALDLAAAVLGLPVDYEWLPTPEI---TDPEDLAGFDGI 57
Query: 105 WSDFCKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLK 164
W VPG R +G + A ++AREN PFLG C G Q A++EY R+VLG
Sbjct: 58 W---------CVPGS-PYRNDDGALTAIRFARENGIPFLGTCGGFQHALLEYARNVLGWA 107
Query: 165 DADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHETHFKPEHKSKLKLLYGNKDK 224
DA E P G PV+ + ++ + +P S + YG +
Sbjct: 108 DAAHAETDPEGD---RPVIAPLS--------CSLVEKTGDIRLRPG--SLIARAYG-TLE 153
Query: 225 IEERHRHRYEVNKKYVPDYEKHGFLFTGVDEK-EVRMEIAELRDHPYYVAVQFHPEYLSR 283
IEE + RY VN ++V E TG DE +VR EL HP++VA F PE +
Sbjct: 154 IEEGYHCRYGVNPEFVAALESGDLRVTGWDEDGDVRA--VELPGHPFFVATLFQPERAAL 211
Query: 284 PLRPSPPFLGLILAAAGK 301
RP P + AA
Sbjct: 212 AGRPPPLVRAFLRAARAA 229
>gnl|CDD|153210 cd01653, GATase1, Type 1 glutamine amidotransferase (GATase1)-like
domain. Type 1 glutamine amidotransferase
(GATase1)-like domain. This group includes proteins
similar to Class I glutamine amidotransferases, the
intracellular PH1704 from Pyrococcus horikoshii, the
C-terminal of the large catalase: Escherichia coli
HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4
beta-galactosidase middle domain. The majority of
proteins in this group have a reactive Cys found in the
sharp turn between a beta strand and an alpha helix
termed the nucleophile elbow. For Class I glutamine
amidotransferases proteins which transfer ammonia from
the amide side chain of glutamine to an acceptor
substrate, this Cys forms a Cys-His-Glu catalytic triad
in the active site. Glutamine amidotransferases
activity can be found in a range of biosynthetic enzymes
included in this cd: glutamine amidotransferase,
formylglycinamide ribonucleotide, GMP synthetase,
anthranilate synthase component II, glutamine-dependent
carbamoyl phosphate synthase, cytidine triphosphate
synthetase, gamma-glutamyl hydrolase, imidazole glycerol
phosphate synthase and, cobyric acid synthase. For
Pyrococcus horikoshii PH1704, the Cys of the nucleophile
elbow together with a different His and, a Glu from an
adjacent monomer form a catalytic triad different from
the typical GATase1 triad. The E. coli HP-II C-terminal
domain, S. meliloti Rm1021 ThuA and the A4
beta-galactosidase middle domain lack the catalytic
triad typical GATaseI domains. GATase1-like domains can
occur either as single polypeptides, as in Class I
glutamine amidotransferases, or as domains in a much
larger multifunctional synthase protein, such as CPSase.
Length = 115
Score = 62.2 bits (151), Expect = 3e-12
Identities = 29/111 (26%), Positives = 43/111 (38%), Gaps = 21/111 (18%)
Query: 48 IGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSD 107
+ ++ E AS AL A + +++S D ++ D
Sbjct: 1 VAVLLFPGFEELELASPLDALREAGA-----------EVDVVSPDGGP------VESDVD 43
Query: 108 FCKVDGIIVPGGFG----KRGLEGKIAACKWARENNKPFLGICLGLQAAVI 154
DG+I+PGG G E +A + A KP LGICLG Q V+
Sbjct: 44 LDDYDGLILPGGPGTPDDLARDEALLALLREAAAAGKPILGICLGAQLLVL 94
>gnl|CDD|153222 cd03128, GAT_1, Type 1 glutamine amidotransferase (GATase1)-like
domain. Type 1 glutamine amidotransferase
(GATase1)-like domain. This group contains proteins
similar to Class I glutamine amidotransferases, the
intracellular PH1704 from Pyrococcus horikoshii, the
C-terminal of the large catalase: Escherichia coli
HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4
beta-galactosidase middle domain and peptidase E. The
majority of proteins in this group have a reactive Cys
found in the sharp turn between a beta strand and an
alpha helix termed the nucleophile elbow. For Class I
glutamine amidotransferases proteins which transfer
ammonia from the amide side chain of glutamine to an
acceptor substrate, this Cys forms a Cys-His-Glu
catalytic triad in the active site. Glutamine
amidotransferases activity can be found in a range of
biosynthetic enzymes included in this cd: glutamine
amidotransferase, formylglycinamide ribonucleotide, GMP
synthetase, anthranilate synthase component II,
glutamine-dependent carbamoyl phosphate synthase
(CPSase), cytidine triphosphate synthetase,
gamma-glutamyl hydrolase, imidazole glycerol phosphate
synthase and, cobyric acid synthase. For Pyrococcus
horikoshii PH1704, the Cys of the nucleophile elbow
together with a different His and, a Glu from an
adjacent monomer form a catalytic triad different from
the typical GATase1 triad. Peptidase E is believed to be
a serine peptidase having a Ser-His-Glu catalytic triad
which differs from the Cys-His-Glu catalytic triad of
typical GATase1 domains, by having a Ser in place of the
reactive Cys at the nucleophile elbow. The E. coli HP-II
C-terminal domain, S. meliloti Rm1021 ThuA and the A4
beta-galactosidase middle domain lack the catalytic
triad typical GATaseI domains. GATase1-like domains can
occur either as single polypeptides, as in Class I
glutamine amidotransferases, or as domains in a much
larger multifunctional synthase protein, such as CPSase.
Peptidase E has a circular permutation in the common
core of a typical GTAse1 domain.
Length = 92
Score = 58.8 bits (142), Expect = 3e-11
Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 21/108 (19%)
Query: 48 IGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSD 107
+ ++ E AS AL A + +++S D ++ D
Sbjct: 1 VAVLLFGGSEELELASPLDALREAGA-----------EVDVVSPDGGP------VESDVD 43
Query: 108 FCKVDGIIVPGGFG----KRGLEGKIAACKWARENNKPFLGICLGLQA 151
DG+I+PGG G E +A + A KP LGICLG Q
Sbjct: 44 LDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQL 91
>gnl|CDD|223196 COG0118, HisH, Glutamine amidotransferase [Amino acid transport and
metabolism].
Length = 204
Score = 51.8 bits (125), Expect = 6e-08
Identities = 53/240 (22%), Positives = 74/240 (30%), Gaps = 92/240 (38%)
Query: 63 SLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPG---- 118
S+ +ALE ++S DP+ + K D +I+PG
Sbjct: 16 SVKKALERLGAEV------------VVSRDPE------------EILKADKLILPGVGAF 51
Query: 119 -----GFGKRGLEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSV-------LGLKDA 166
+RGL I A E+ KPFLGICLG+Q + + RS LGL
Sbjct: 52 GAAMANLRERGLIEAIKE---AVESGKPFLGICLGMQ---LLFERSEEGGGVKGLGLIPG 105
Query: 167 DTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHETHFKPEHKSKLKLLYGNKDKIE 226
+ H +G ++ F H L G I
Sbjct: 106 KVVRFPAEDLKVPH-------------------MGWNQVEFVRGH----PLFKG----IP 138
Query: 227 ERHR----HRYEV---NKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPE 279
+ H Y V N + V +G F K+ QFHPE
Sbjct: 139 DGAYFYFVHSYYVPPGNPETVVATTDYGEPFPAAVAKDN------------VFGTQFHPE 186
>gnl|CDD|219017 pfam06418, CTP_synth_N, CTP synthase N-terminus. This family
consists of the N-terminal region of the CTP synthase
protein (EC:6.3.4.2). This family is found in
conjunction with pfam00117 located in the C-terminal
region of the protein. CTP synthase catalyzes the
synthesis of CTP from UTP by amination of the pyrimidine
ring at the 4-position.
Length = 276
Score = 51.3 bits (124), Expect = 2e-07
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 4 TESVRAKISMFCHVTPENVIFNPDVKPIYKVRML 37
E + KI++FC+V E VI PDV+ IY+V +L
Sbjct: 217 DEETKEKIALFCNVPKEAVISAPDVESIYEVPLL 250
>gnl|CDD|224982 COG2071, COG2071, Predicted glutamine amidotransferases [General
function prediction only].
Length = 243
Score = 47.3 bits (113), Expect = 3e-06
Identities = 45/197 (22%), Positives = 69/197 (35%), Gaps = 49/197 (24%)
Query: 111 VDGIIVPGG-------FGKRGLEGK-----------IAACKWARENNKPFLGICLGLQA- 151
+DG+I+ GG +G+ E +A + A E P LGIC GLQ
Sbjct: 61 IDGLILTGGSNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIPILGICRGLQLL 120
Query: 152 AVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHETHFKPEH 211
V G + + +H N + + HE H +P
Sbjct: 121 NVALGGTLYQDISE-----------------QPGHIDHRQPN---PVHIESHEVHIEPG- 159
Query: 212 KSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYY 271
SKL + G + H + KK P G + +E E+++ +
Sbjct: 160 -SKLAKILGESE-FMVNSFHHQAI-KKLAP-----GLVVEARAPDGT-VEAVEVKNDAFV 210
Query: 272 VAVQFHPEYLSRPLRPS 288
+ VQ+HPEYL S
Sbjct: 211 LGVQWHPEYLVDTNPLS 227
>gnl|CDD|237288 PRK13141, hisH, imidazole glycerol phosphate synthase subunit HisH;
Provisional.
Length = 205
Score = 44.0 bits (105), Expect = 3e-05
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 12/50 (24%)
Query: 110 KVDGIIVPG--GFG-------KRGLEGKIAACKWARENNKPFLGICLGLQ 150
DG+I+PG F +RGL+ I K A + KP LGICLG+Q
Sbjct: 37 AADGVILPGVGAFPDAMANLRERGLDEVI---KEAVASGKPLLGICLGMQ 83
>gnl|CDD|153219 cd01748, GATase1_IGP_Synthase, Type 1 glutamine amidotransferase
(GATase1) domain found in imidazole glycerol phosphate
synthase (IGPS). Type 1 glutamine amidotransferase
(GATase1) domain found in imidazole glycerol phosphate
synthase (IGPS). IGPS incorporates ammonia derived from
glutamine into
N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-
carboxamide ribonucleotide (PRFAR) to form
5'-(5-aminoimidazole-4-carboxamide) ribonucleotide
(AICAR) and imidazole glycerol phosphate (IGP). The
glutamine amidotransferase domain generates the ammonia
nucleophile which is channeled from the glutaminase
active site to the PRFAR active site. IGPS belong to the
triad family of amidotransferases having a conserved
Cys-His-Glu catalytic triad in the glutaminase active
site.
Length = 198
Score = 42.9 bits (102), Expect = 6e-05
Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 36/99 (36%)
Query: 62 ASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPG-G- 119
S+ ALE +++ DP+ + D +I+PG G
Sbjct: 12 RSVANALERLGAEV------------IITSDPE------------EILSADKLILPGVGA 47
Query: 120 FG-------KRGLEGKIAACKWARENNKPFLGICLGLQA 151
FG +RGL + + + KPFLGICLG+Q
Sbjct: 48 FGDAMANLRERGLIEALK--EAI-ASGKPFLGICLGMQL 83
>gnl|CDD|239387 cd03113, CTGs, CTP synthetase (CTPs) is a two-domain protein, which
consists of an N-terminal synthetase domain and
C-terminal glutaminase domain. The enzymes hydrolyze the
amide bond of glutamine to ammonia and glutamate at the
glutaminase domains and transfer nascent ammonia to the
acceptor substrate at the synthetase domain to form an
aminated product. Glutaminase domains have evolved from
the same ancestor, whereas the synthetase domains are
evolutionarily unrelated and have different functions.
This protein family is classified based on the
N-terminal synthetase domain.
Length = 255
Score = 42.6 bits (101), Expect = 1e-04
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 4 TESVRAKISMFCHVTPENVIFNPDVKPIYKV 34
+R KI++FC V PE VI PDV IY+V
Sbjct: 216 PPEIREKIALFCDVPPEAVISAPDVDNIYEV 246
>gnl|CDD|237289 PRK13143, hisH, imidazole glycerol phosphate synthase subunit HisH;
Provisional.
Length = 200
Score = 41.4 bits (98), Expect = 2e-04
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 34/95 (35%)
Query: 63 SLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPG--GF 120
S+++ALE A +++ DP+ + DGI++PG F
Sbjct: 15 SVSKALERAGA------------EVVITSDPE------------EILDADGIVLPGVGAF 50
Query: 121 GK-----RGLEGKIAACKWARENNKPFLGICLGLQ 150
G L I A + KPFLGICLG+Q
Sbjct: 51 GAAMENLSPLRDVILE---AARSGKPFLGICLGMQ 82
>gnl|CDD|237290 PRK13146, hisH, imidazole glycerol phosphate synthase subunit HisH;
Provisional.
Length = 209
Score = 40.5 bits (96), Expect = 4e-04
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 11/48 (22%)
Query: 112 DGIIVPG---------GFGKRGLEGKIAACKWARENNKPFLGICLGLQ 150
D +++PG G GL + +PFLGIC+G+Q
Sbjct: 43 DRVVLPGVGAFADCMRGLRAVGLGEAVIEA--VLAAGRPFLGICVGMQ 88
>gnl|CDD|178226 PLN02617, PLN02617, imidazole glycerol phosphate synthase hisHF.
Length = 538
Score = 37.8 bits (88), Expect = 0.006
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 12/54 (22%)
Query: 106 SDFCKVDGIIVPG--GFG-------KRGLEGKIAACKWARENNKPFLGICLGLQ 150
D D +I PG FG RG+ A ++ +N++PFLGICLGLQ
Sbjct: 40 EDILNADRLIFPGVGAFGSAMDVLNNRGMAE--ALREYI-QNDRPFLGICLGLQ 90
>gnl|CDD|219535 pfam07722, Peptidase_C26, Peptidase C26. These peptidases have
gamma-glutamyl hydrolase activity; that is they catalyze
the cleavage of the gamma-glutamyl bond in
poly-gamma-glutamyl substrates. They are structurally
related to pfam00117, but contain extensions in four
loops and at the C terminus.
Length = 219
Score = 36.8 bits (86), Expect = 0.008
Identities = 45/191 (23%), Positives = 67/191 (35%), Gaps = 50/191 (26%)
Query: 110 KVDGIIVPGG--------FGKRGLE-----------GKIAACKWARENNKPFLGICLGLQ 150
VDG+++ GG +G+ ++A + A E KP LGIC G+Q
Sbjct: 58 LVDGLLLTGGQSNVDPSLYGEEPSPSGGYYDPARDAFELALIRAALERGKPILGICRGMQ 117
Query: 151 AAVIEYGRSVLGLKDADTEEEQPPGQTLEHPV-VVYMPEHNPGNMGGTMRLGKHETHFKP 209
+ G + L E P H + V Y P H + L
Sbjct: 118 LLNVALGGT-LYQD----IPEHPGNSDHHHQLAVQYAPSH-------AVSL--------- 156
Query: 210 EHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHP 269
E S L L G ++I H + + + G +E E + P
Sbjct: 157 EPGSLLARLLG-AEEILVNSLHHQAIKR--LAP----GLRVEATAPDGT-IEAIESPNAP 208
Query: 270 YYV-AVQFHPE 279
Y+V VQ+HPE
Sbjct: 209 YFVLGVQWHPE 219
>gnl|CDD|233601 TIGR01855, IMP_synth_hisH, imidazole glycerol phosphate synthase,
glutamine amidotransferase subunit. This model
represents the glutamine amidotransferase subunit (or
domain, in eukaryotic systems) of imidazole glycerol
phosphate synthase. This subunit catalyzes step 5 of
histidine biosynthesis from PRPP. The other subunit, the
cyclase, catalyzes step 6 [Amino acid biosynthesis,
Histidine family].
Length = 196
Score = 35.8 bits (83), Expect = 0.014
Identities = 43/178 (24%), Positives = 59/178 (33%), Gaps = 41/178 (23%)
Query: 110 KVDGIIVPG----GFGKRGLE--GKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGL 163
D +I+PG G L G + KP LGICLG+Q + + RS
Sbjct: 36 LADKLILPGVGAFGAAMARLRENGLDLFVELVVRLGKPVLGICLGMQ---LLFERS---- 88
Query: 164 KDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHETHFKPEHKSKLKLLYGNKD 223
E PG L VV + +MG +E H E LL G +
Sbjct: 89 ----EEGGGVPGLGLIKGNVVKLEARKVPHMGW------NEVHPVKES----PLLNGIDE 134
Query: 224 KIEERHRHRY--EVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPE 279
H Y ++ V Y +G F + + + QFHPE
Sbjct: 135 GAYFYFVHSYYAVCEEEAVLAYADYGEKFPAAVQ----------KGN--IFGTQFHPE 180
>gnl|CDD|223586 COG0512, PabA, Anthranilate/para-aminobenzoate synthases component
II [Amino acid transport and metabolism / Coenzyme
metabolism].
Length = 191
Score = 35.6 bits (83), Expect = 0.014
Identities = 32/144 (22%), Positives = 44/144 (30%), Gaps = 47/144 (32%)
Query: 139 NKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPE--HNPGNMGG 196
P LG+CLG QA +G G+ VV E H
Sbjct: 74 RIPILGVCLGHQAIAEAFG-----------------GK------VVRAKEPMH------- 103
Query: 197 TMRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGV-DE 255
GK L G + H V+ + +P+ T ++
Sbjct: 104 ----GKT----SIITHDGSGLFAGLPNPFTVTRYHSLVVDPETLPE----ELEVTAESED 151
Query: 256 KEVRMEIAELRDHPYYVAVQFHPE 279
V M + + P Y VQFHPE
Sbjct: 152 GGVIMAV-RHKKLPIY-GVQFHPE 173
>gnl|CDD|153212 cd01741, GATase1_1, Subgroup of proteins having the Type 1
glutamine amidotransferase (GATase1) domain. This group
contains a subgroup of proteins having the Type 1
glutamine amidotransferase (GATase1) domain. GATase
activity catalyses the transfer of ammonia from the
amide side chain of glutamine to an acceptor substrate.
Glutamine amidotransferases (GATase) includes the triad
family of amidotransferases which have a conserved
Cys-His-Glu catalytic triad in the glutaminase active
site. In this subgroup this triad is conserved. GATase
activity can be found in a range of biosynthetic
enzymes, including: glutamine amidotransferase,
formylglycinamide ribonucleotide, GMP synthetase ,
anthranilate synthase component II, glutamine-dependent
carbamoyl phosphate synthase, cytidine triphosphate
synthetase, gamma-glutamyl hydrolase, imidazole glycerol
phosphate synthase and, cobyric acid synthase. Glutamine
amidotransferase (GATase) domains can occur either as
single polypeptides, as in glutamine amidotransferases,
or as domains in a much larger multifunctional synthase
protein, such as CPSase.
Length = 188
Score = 35.3 bits (82), Expect = 0.021
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 107 DFCKVDGIIVPGGF------GKRGLEGKIAACKWARENNKPFLGICLGLQ 150
D DG+++ GG L+ + A KP LGICLG Q
Sbjct: 43 DLDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAAGKPVLGICLGHQ 92
>gnl|CDD|153221 cd01750, GATase1_CobQ, Type 1 glutamine amidotransferase (GATase1)
domain found in Cobyric Acid Synthase (CobQ). Type 1
glutamine amidotransferase (GATase1) domain found in
Cobyric Acid Synthase (CobQ). CobQ plays a role in
cobalamin biosythesis. CobQ catalyses amidations at
positions B, D, E, and G on adenosylcobyrinic
A,C-diamide in the biosynthesis of cobalamin. CobQ
belongs to the triad family of amidotransferases. Two
of the three residues of the catalytic triad that are
involved in glutamine binding, hydrolysis and transfer
of the resulting ammonia to the acceptor substrate in
other triad aminodotransferases are conserved in CobQ.
Length = 194
Score = 34.9 bits (81), Expect = 0.028
Identities = 24/78 (30%), Positives = 28/78 (35%), Gaps = 22/78 (28%)
Query: 111 VDGIIVPGG---------FGKRGLEGKIAACKWARENNKPFLGICLGLQ--------AAV 153
D II+PG KRGL I P LGIC G Q
Sbjct: 38 ADLIILPGSKDTIQDLAWLRKRGLAEAIKN---YARAGGPVLGICGGYQMLGKYIVDPEG 94
Query: 154 IEYGRSV--LGLKDADTE 169
+E + LGL D +TE
Sbjct: 95 VEGPGEIEGLGLLDVETE 112
>gnl|CDD|237429 PRK13566, PRK13566, anthranilate synthase; Provisional.
Length = 720
Score = 35.7 bits (83), Expect = 0.029
Identities = 37/153 (24%), Positives = 50/153 (32%), Gaps = 53/153 (34%)
Query: 133 KWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPG 192
A N P G+CLGLQA + E
Sbjct: 592 DAALARNLPIFGVCLGLQA----------------------------------IVEA--- 614
Query: 193 NMGGTMRLGKHETHFKPEHKSKLK------LLYGNKDKIEERHRHRYEVNKKYVPDYEKH 246
GG + + H KP S+++ L G ++ H + + +PD
Sbjct: 615 -FGGELGQLAYPMHGKP---SRIRVRGPGRLFSGLPEEFTVGRYHSLFADPETLPD---- 666
Query: 247 GFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPE 279
L T E V M I E + P AVQFHPE
Sbjct: 667 ELLVTAETEDGVIMAI-EHKTLPVA-AVQFHPE 697
>gnl|CDD|153214 cd01743, GATase1_Anthranilate_Synthase, Type 1 glutamine
amidotransferase (GATase1) domain found in Anthranilate
synthase. Type 1 glutamine amidotransferase (GATase1)
domain found in Anthranilate synthase (ASase). This
group contains proteins similar to para-aminobenzoate
(PABA) synthase and ASase. These enzymes catalyze
similar reactions and produce similar products, PABA and
ortho-aminobenzoate (anthranilate). Each enzyme is
composed of non-identical subunits: a glutamine
amidotransferase subunit (component II) and a subunit
that produces an aminobenzoate products (component I).
ASase catalyses the synthesis of anthranilate from
chorismate and glutamine and is a tetrameric protein
comprising two copies each of components I and II.
Component II of ASase belongs to the family of triad
GTases which hydrolyze glutamine and transfer nascent
ammonia between the active sites. In some bacteria, such
as Escherichia coli, component II can be much larger
than in other organisms, due to the presence of
phosphoribosyl-anthranilate transferase (PRTase)
activity. PRTase catalyses the second step in tryptophan
biosynthesis and results in the addition of
5-phosphoribosyl-1-pyrophosphate to anthranilate to
create N-5'-phosphoribosyl-anthranilate. In E.coli, the
first step in the conversion of chorismate to PABA
involves two proteins: PabA and PabB which co-operate to
transfer the amide nitrogen of glutamine to chorismate
forming 4-amino-4 deoxychorismate (ADC). PabA acts as a
glutamine amidotransferase, supplying an amino group to
PabB, which carries out the amination reaction. A third
protein PabC then mediates elimination of pyruvate and
aromatization to give PABA. Several organisms have
bipartite proteins containing fused domains homologous
to PabA and PabB commonly called PABA synthases. These
hybrid PABA synthases may produce ADC and not PABA.
Length = 184
Score = 34.4 bits (80), Expect = 0.039
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 127 GKIAACKWARENNKPFLGICLGLQAAVIEYG 157
G A P LG+CLG QA +G
Sbjct: 59 GISLEIIRALAGKVPILGVCLGHQAIAEAFG 89
Score = 29.0 bits (66), Expect = 2.5
Identities = 10/14 (71%), Positives = 10/14 (71%), Gaps = 1/14 (7%)
Query: 266 RDHPYYVAVQFHPE 279
RD P Y VQFHPE
Sbjct: 157 RDLPIY-GVQFHPE 169
>gnl|CDD|153218 cd01747, GATase1_Glutamyl_Hydrolase, Type 1 glutamine
amidotransferase (GATase1) domain found in
gamma-Glutamyl Hydrolase. Type 1 glutamine
amidotransferase (GATase1) domain found in
gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase
catalyzes the cleavage of the gamma-glutamyl chain of
folylpoly-gamma-glutamyl substrates and is a central
enzyme in folyl and antifolyl poly-gamma-glutamate
metabolism. GATase activity involves the removal of the
ammonia group from a glutamate molecule and its
subsequent transfer to a specific substrate, thus
creating a new carbon-nitrogen group on the substrate.
gamma-Glutamyl hydrolases belong to the triad family of
amidotransferases having a conserved Cys-His-Glu
catalytic triad in the glutaminase active site.
Length = 273
Score = 35.0 bits (81), Expect = 0.042
Identities = 36/186 (19%), Positives = 58/186 (31%), Gaps = 38/186 (20%)
Query: 108 FCKVDGIIVPGG--FGKRGLEGKIAAC--KWARENNK-----PFLGICLGLQAAVIEYGR 158
F ++GI+ PGG + A A E N P G CLG +
Sbjct: 52 FKSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPVWGTCLGFELLTYLTSG 111
Query: 159 SVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHETHFKPEHKSKLKLL 218
L L+ + +P + + + F P+ L
Sbjct: 112 ETLLLEATEATNSA-------------LPLNFTEDALQ----SRLFKRFPPDLLKSLA-- 152
Query: 219 YGNKDKIEERHRHRYEVNKKYVPDYEK----HGFLFTGVDEKEVR-MEIAELRDHPYYVA 273
+ + + HRY ++ + + L T D V + E +P Y
Sbjct: 153 ---TEPLTM-NNHRYGISPENFTENGLLSDFFNVLTTNDDWNGVEFISTVEAYKYPIY-G 207
Query: 274 VQFHPE 279
VQ+HPE
Sbjct: 208 VQWHPE 213
>gnl|CDD|219513 pfam07685, GATase_3, CobB/CobQ-like glutamine amidotransferase
domain.
Length = 157
Score = 33.8 bits (78), Expect = 0.047
Identities = 21/82 (25%), Positives = 28/82 (34%), Gaps = 21/82 (25%)
Query: 107 DFCKVDGIIVPGGFG---------KRGLEGKIAACKWARENNKPFLGICLGLQAAVIEYG 157
D +I+PGG GL+ + E P LGIC G Q
Sbjct: 4 LPGDADLVILPGGKPTIQDLALLRNSGLDEALRE---HAEAGGPILGICGGYQ------- 53
Query: 158 RSVLGLKDADTEEEQPPGQTLE 179
+LG D E G+ +E
Sbjct: 54 --MLGETIIDGIEGTAGGERVE 73
>gnl|CDD|153216 cd01745, GATase1_2, Subgroup of proteins having the Type 1
glutamine amidotransferase (GATase1) domain. This group
contains a subgroup of proteins having the Type 1
glutamine amidotransferase (GATase1) domain. GATase
activity catalyses the transfer of ammonia from the
amide side chain of glutamine to an acceptor substrate.
Glutamine amidotransferases (GATase) includes the triad
family of amidotransferases which have a conserved
Cys-His-Glu catalytic triad in the glutaminase active
site. In this subgroup this triad is conserved. GATase
activity can be found in a range of biosynthetic
enzymes, including: glutamine amidotransferase,
formylglycinamide ribonucleotide, GMP synthetase ,
anthranilate synthase component II, glutamine-dependent
carbamoyl phosphate synthase, cytidine triphosphate
synthetase, gamma-glutamyl hydrolase, imidazole glycerol
phosphate synthase and, cobyric acid synthase. Glutamine
amidotransferase (GATase) domains can occur either as
single polypeptides, as in glutamine amidotransferases,
or as domains in a much larger multifunctional synthase
protein, such as CPSase.
Length = 189
Score = 34.1 bits (79), Expect = 0.056
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 18/59 (30%)
Query: 110 KVDGIIVPGG--------FGKRGLEGK----------IAACKWARENNKPFLGICLGLQ 150
+DG+++ GG + E +A + A E KP LGIC G+Q
Sbjct: 53 LLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRAALERGKPILGICRGMQ 111
Score = 33.7 bits (78), Expect = 0.073
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 264 ELRDHPYYVAVQFHPEYL 281
E D P+ + VQ+HPE+L
Sbjct: 157 ESPDRPFVLGVQWHPEWL 174
>gnl|CDD|233553 TIGR01737, FGAM_synth_I, phosphoribosylformylglycinamidine synthase
I. In some species, phosphoribosylformylglycinamidine
synthase is composed of a single polypeptide chain. This
model describes the PurQ protein of Bacillus subtilis
(where PurL, PurQ, and PurS are required for
phosphoribosylformylglycinamidine synthase activity) and
functionally equivalent proteins from other bacteria and
archaea [Purines, pyrimidines, nucleosides, and
nucleotides, Purine ribonucleotide biosynthesis].
Length = 227
Score = 34.3 bits (79), Expect = 0.058
Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 9/53 (16%)
Query: 107 DFCKVDGIIVPGGF--GKRGLEGKIAACKWAR-------ENNKPFLGICLGLQ 150
DG+++PGGF G G IAA E P LGIC G Q
Sbjct: 37 SLPDYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFAEKGVPVLGICNGFQ 89
>gnl|CDD|179112 PRK00758, PRK00758, GMP synthase subunit A; Validated.
Length = 184
Score = 33.3 bits (77), Expect = 0.081
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 112 DGIIVPGGFGKRGLEGKIAACK-WARENNKPFLGICLGLQAAVIEYGRSV 160
DG+I+ GG +E + C + +E + P LGICLG Q +G V
Sbjct: 43 DGLILSGG---PDIE-RAGNCPEYLKELDVPILGICLGHQLIAKAFGGEV 88
>gnl|CDD|107248 cd01391, Periplasmic_Binding_Protein_Type_1, Type 1 periplasmic
binding fold superfamily. Type 1 periplasmic binding
fold superfamily. This model and hierarchy represent the
ligand binding domains of the LacI family of
transcriptional regulators, periplasmic binding proteins
of the ABC-type transport systems, the family C
G-protein couples receptors (GPCRs), membrane bound
guanylyl cyclases including the family of natriuretic
peptide receptors (NPRs), and the N-terminal
leucine/isoleucine/valine- binding protein (LIVBP)-like
domains of the ionotropic glutamate receptors (iGluRs).
In LacI-like transcriptional regulator and the bacterial
periplasmic binding proteins the ligands are
monosaccharides including lactose, ribose, fructose,
xylose, arabinose, galactose/glucose, and other sugars,
with a few exceptions. Periplasmic sugar binding
proteins are one of the components of ABC transporters
and are involved in the active transport of
water-soluble ligands. The LacI family of proteins
consists of transcriptional regulators related to the
lac repressor. In this case, the sugar binding domain
binds a sugar which changes the DNA binding activity of
the repressor domain. The periplasmic binding proteins
are the primary receptors for chemotaxis and transport
of many sugar based solutes. The core structures of
periplasmic binding proteins are classified into two
types, and they differ in number and order of beta
strands: type 1 has six beta strands, while type 2 has
five beta strands per sub-domain. These two structural
folds are thought to be distantly related via a common
ancestor. Notably, while the N-terminal LIVBP-like
domain of iGluRs belongs to the type 1
periplasmic-binding fold protein superfamily, the
glutamate-binding domain of the iGluR is structurally
similar to the type 2 periplasmic-binding fold.
Length = 269
Score = 34.1 bits (78), Expect = 0.082
Identities = 23/101 (22%), Positives = 36/101 (35%), Gaps = 15/101 (14%)
Query: 47 TIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWS 106
IG++ + A L +E A+ R L++ DS+ DP+ A
Sbjct: 1 KIGVLLPLSGSAPFGAQLLAGIELAAEEIGRGLEVILADSQS---DPERALEAL-----R 52
Query: 107 DFC--KVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGI 145
D VDGII P +A + A P + +
Sbjct: 53 DLIQQGVDGIIGPPSSSSA-----LAVVELAAAAGIPVVSL 88
>gnl|CDD|183877 PRK13170, hisH, imidazole glycerol phosphate synthase subunit HisH;
Provisional.
Length = 196
Score = 33.7 bits (78), Expect = 0.083
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 10/63 (15%)
Query: 122 KRGLEGKIAACKWARENNKPFLGICLGLQ--AAVIEYGRSV--LGLKDADTEEEQPPGQT 177
+R L I AC +P LGICLG+Q E V LG+ D ++ G
Sbjct: 59 ERELIDLIKACT------QPVLGICLGMQLLGERSEESGGVDCLGIIDGPVKKMTDFGLP 112
Query: 178 LEH 180
L H
Sbjct: 113 LPH 115
>gnl|CDD|183101 PRK11366, puuD, gamma-glutamyl-gamma-aminobutyrate hydrolase;
Provisional.
Length = 254
Score = 33.7 bits (77), Expect = 0.084
Identities = 54/223 (24%), Positives = 78/223 (34%), Gaps = 69/223 (30%)
Query: 110 KVDGIIVPGG--------FGKRGLE-----GK----IAACKWARENNKPFLGICLGLQAA 152
K+DGI +PG +G+ G E G+ +A A E P IC GLQ
Sbjct: 61 KLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGLQEL 120
Query: 153 VIEYG----RSVLGLKDADTEEEQPPGQTLEHPV-VVYMPEHN----PGNMGGTMRLGKH 203
V+ G R + + E P E PV Y P H G + +
Sbjct: 121 VVATGGSLHRKLCEQPELLEHREDP-----ELPVEQQYAPSHEVQVEEGGLLSALLPECS 175
Query: 204 ETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIA 263
H K++ + ++E R PD G+ +E
Sbjct: 176 NFWVNSLHGQGAKVV-SPRLRVEAR-----------SPD---------GL------VEAV 208
Query: 264 ELRDHPYYVAVQFHPEY------LSRPLRPSPPFLGLILAAAG 300
+ +HP+ + VQ+HPE+ LSR L F G I A
Sbjct: 209 SVINHPFALGVQWHPEWNSSEYALSRIL-----FEGFITACQH 246
>gnl|CDD|214389 CHL00188, hisH, imidazole glycerol phosphate synthase subunit hisH;
Provisional.
Length = 210
Score = 33.3 bits (76), Expect = 0.11
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 12/54 (22%)
Query: 106 SDFCKVDGIIVPG---------GFGKRGLEGKIAACKWARENNKPFLGICLGLQ 150
S+ +V +++PG K+GL I KW E N PF+GICLGL
Sbjct: 35 SELAQVHALVLPGVGSFDLAMKKLEKKGLITPIK--KWIAEGN-PFIGICLGLH 85
>gnl|CDD|216814 pfam01965, DJ-1_PfpI, DJ-1/PfpI family. The family includes the
protease PfpI. This domain is also found in
transcriptional regulators. This N-terminal region of
the full-length AdpA proteins is necessary for
dimerisation of the molecule.
Length = 142
Score = 31.9 bits (73), Expect = 0.16
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 112 DGIIVPGGF-GKRGLEGKIAACKWARE---NNKPFLGICLG---LQAAVIEYGRSVLGLK 164
D +++PGG G L K+ +E + KP IC G L AA + GR V
Sbjct: 37 DALVIPGGHAGAEDLRDDEKLVKFVKEFYESGKPIAAICHGPVVLAAAGLLKGRRVTSFP 96
Query: 165 DADTEEEQPPGQTLEHPVVV 184
+ + ++ PVVV
Sbjct: 97 SVKELLKNAGAEYVDQPVVV 116
>gnl|CDD|180590 PRK06490, PRK06490, glutamine amidotransferase; Provisional.
Length = 239
Score = 33.0 bits (76), Expect = 0.16
Identities = 21/54 (38%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Query: 139 NKPFLGICLGLQAAVIEYGRSVLGLKDADTE------EEQPPGQTLEH-PVVVY 185
NKPFLGICLG Q G V D E G+ L H P +VY
Sbjct: 86 NKPFLGICLGAQMLARHLGARVAPHPDGRVEIGYYPLRPTEAGRALMHWPEMVY 139
>gnl|CDD|153213 cd01742, GATase1_GMP_Synthase, Type 1 glutamine amidotransferase
(GATase1) domain found in GMP synthetase. Type 1
glutamine amidotransferase (GATase1) domain found in GMP
synthetase. GMP synthetase is a glutamine
amidotransferase from the de novo purine biosynthetic
pathway. Glutamine amidotransferase (GATase) activity
catalyse the transfer of ammonia from the amide side
chain of glutamine to an acceptor substrate. GMP
synthetase catalyses the amination of the nucleotide
precursor xanthosine 5'-monophospahte to form GMP. GMP
synthetase belongs to the triad family of
amidotransferases having a conserved Cys-His-Glu
catalytic triad in the glutaminase active site.
Length = 181
Score = 32.5 bits (75), Expect = 0.18
Identities = 16/55 (29%), Positives = 19/55 (34%), Gaps = 8/55 (14%)
Query: 110 KVDGIIVPGG----FGKRGLEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSV 160
GII+ GG + E E P LGIC G+Q G V
Sbjct: 41 NPKGIILSGGPSSVYE----EDAPRVDPEIFELGVPVLGICYGMQLIAKALGGKV 91
>gnl|CDD|183878 PRK13181, hisH, imidazole glycerol phosphate synthase subunit HisH;
Provisional.
Length = 199
Score = 31.8 bits (73), Expect = 0.32
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 12/48 (25%)
Query: 112 DGIIVPG---------GFGKRGLEGKIAACKWARENNKPFLGICLGLQ 150
D +I+PG + GL+ + K E +P LGICLG+Q
Sbjct: 39 DKVILPGVGAFGQAMRSLRESGLDEAL---KEHVEKKQPVLGICLGMQ 83
>gnl|CDD|223125 COG0047, PurL, Phosphoribosylformylglycinamidine (FGAM) synthase,
glutamine amidotransferase domain [Nucleotide transport
and metabolism].
Length = 231
Score = 31.8 bits (73), Expect = 0.33
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 9/51 (17%)
Query: 110 KVDGIIVPGGF--GKRGLEGKIAACKWAR-------ENNKPFLGICLGLQA 151
DG+++PGGF G G IAA E KP LGIC G Q
Sbjct: 43 DFDGVVLPGGFSYGDYLRAGAIAAIAPVMDEVREFAEKGKPVLGICNGFQI 93
>gnl|CDD|214398 MTH00004, ND5, NADH dehydrogenase subunit 5; Validated.
Length = 602
Score = 32.1 bits (74), Expect = 0.44
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 287 PSPPFLGLILAAAGK 301
P+ P LGLILAA GK
Sbjct: 208 PTLPLLGLILAATGK 222
>gnl|CDD|215197 PLN02347, PLN02347, GMP synthetase.
Length = 536
Score = 32.0 bits (73), Expect = 0.47
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 133 KWARENNKPFLGICLGLQAAVIEYGRSV 160
+ RE P LGIC G+Q V + G V
Sbjct: 80 DYCRERGVPVLGICYGMQLIVQKLGGEV 107
>gnl|CDD|235140 PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase I;
Provisional.
Length = 219
Score = 31.2 bits (72), Expect = 0.48
Identities = 26/63 (41%), Positives = 30/63 (47%), Gaps = 12/63 (19%)
Query: 99 AEY--HKTWSDFCKVDGIIVPGGF--GKRGLEGKIAA-------CKWARENNKPFLGICL 147
EY HK +D VD +++PGGF G G IAA K E KP LGIC
Sbjct: 29 PEYVWHKE-TDLDGVDAVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEFAEKGKPVLGICN 87
Query: 148 GLQ 150
G Q
Sbjct: 88 GFQ 90
>gnl|CDD|129966 TIGR00888, guaA_Nterm, GMP synthase (glutamine-hydrolyzing),
N-terminal domain or A subunit. This protein of purine
de novo biosynthesis is well-conserved. However, it
appears to split into two separate polypeptide chains in
most of the Archaea. This N-terminal region would be the
smaller subunit [Purines, pyrimidines, nucleosides, and
nucleotides, Purine ribonucleotide biosynthesis].
Length = 188
Score = 30.7 bits (70), Expect = 0.60
Identities = 17/48 (35%), Positives = 21/48 (43%)
Query: 113 GIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSV 160
GII+ GG E A + E P LGIC G+Q + G V
Sbjct: 44 GIILSGGPSSVYAENAPRADEKIFELGVPVLGICYGMQLMAKQLGGEV 91
>gnl|CDD|153215 cd01744, GATase1_CPSase, Small chain of the glutamine-dependent
form of carbamoyl phosphate synthase, CPSase II. This
group of sequences represents the small chain of the
glutamine-dependent form of carbamoyl phosphate
synthase, CPSase II. CPSase II catalyzes the production
of carbomyl phosphate (CP) from bicarbonate, glutamine
and two molecules of MgATP. The reaction is believed to
proceed by a series of four biochemical reactions
involving a minimum of three discrete highly reactive
intermediates. The synthesis of CP is critical for the
initiation of two separate biosynthetic pathways. In one
CP is coupled to aspartate, its carbon and nitrogen
nuclei ultimately incorporated into the aromatic
moieties of pyrimidine nucleotides. In the second
pathway CP is condensed with ornithine at the start of
the urea cycle and is utilized for the detoxification of
ammonia and biosynthesis of arginine. CPSases may be
encoded by one or by several genes, depending on the
species. The E.coli enzyme is a heterodimer consisting
of two polypeptide chains referred to as the small and
large subunit. Ammonia an intermediate during the
biosynthesis of carbomyl phosphate produced by the
hydrolysis of glutamine in the small subunit of the
enzyme is delivered via a molecular tunnel between the
remotely located carboxyphosphate active site in the
large subunit. CPSase IIs belong to the triad family of
amidotransferases having a conserved Cys-His-Glu
catalytic triad in the glutaminase active site. This
group also contains the sequence from the mammalian urea
cycle form which has lost the active site Cys, resulting
in an ammonia-dependent form, CPSase I.
Length = 178
Score = 30.5 bits (70), Expect = 0.69
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 112 DGIIVPGGFGK-RGLEGKIAACKWARENNKPFLGICLGLQA 151
DGI + G G L+ I + P GICLG Q
Sbjct: 41 DGIFLSNGPGDPALLDEAIKTVRKLLGKKIPIFGICLGHQL 81
>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 487
Score = 31.3 bits (71), Expect = 0.74
Identities = 17/102 (16%), Positives = 26/102 (25%), Gaps = 8/102 (7%)
Query: 201 GKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKH--GFLFTGVDEKEV 258
GKH T + L K+ + + ++ P + E
Sbjct: 363 GKHSTFAQLVPVPSLGDYDELKESLADAIDAL----EELAPGLRDRIVAREVLTPLDLER 418
Query: 259 RMEIAELRDHPYYVAVQFHPEYLSRPLRPSPPFLGLILAAAG 300
+ + A RP S P GL L A
Sbjct: 419 YL--GLPGGDIFGGAHTLDQLGPFRPPPKSTPIKGLYLVGAS 458
>gnl|CDD|171871 PRK13142, hisH, imidazole glycerol phosphate synthase subunit HisH;
Provisional.
Length = 192
Score = 30.2 bits (68), Expect = 0.94
Identities = 46/231 (19%), Positives = 74/231 (32%), Gaps = 87/231 (37%)
Query: 63 SLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPG---- 118
++ RA+EH Y ++S K + + II+PG
Sbjct: 14 NVKRAIEHLGYEV------------VVSNTSK------------IIDQAETIILPGVGHF 49
Query: 119 -----GFGKRGLEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQP 173
+ L +A + +K +GICLG+Q + Y S G DA P
Sbjct: 50 KDAMSEIKRLNLNAILA-----KNTDKKMIGICLGMQ---LMYEHSDEG--DASGLGFIP 99
Query: 174 ----PGQTLEHPVVVYMPEHNPGNMGGTMRLGKHETHFKPEHKSKLKLLYGNKDKIEERH 229
QT E+PV P N+ + + +F
Sbjct: 100 GNISRIQT-EYPV----PHLGWNNLVSKHPMLNQDVYFV--------------------- 133
Query: 230 RHRYEVN-KKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPE 279
H Y+ + V Y ++G I + + Y+ +QFHPE
Sbjct: 134 -HSYQAPMSENVIAYAQYGADIPA---------IVQFNN---YIGIQFHPE 171
>gnl|CDD|214416 MTH00066, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 598
Score = 31.0 bits (71), Expect = 0.96
Identities = 11/13 (84%), Positives = 11/13 (84%)
Query: 289 PPFLGLILAAAGK 301
P LGLILAAAGK
Sbjct: 208 LPLLGLILAAAGK 220
>gnl|CDD|214428 MTH00137, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 611
Score = 30.2 bits (69), Expect = 1.9
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 288 SPPFLGLILAAAGK 301
+ P LGLILAA GK
Sbjct: 215 TLPLLGLILAATGK 228
>gnl|CDD|179501 PRK02922, PRK02922, glycogen synthesis protein GlgS; Provisional.
Length = 67
Score = 27.5 bits (61), Expect = 2.1
Identities = 10/16 (62%), Positives = 11/16 (68%), Gaps = 2/16 (12%)
Query: 95 TGNMAEYHKTWSDFCK 110
TGNM E H+TW FC
Sbjct: 35 TGNMDEEHRTW--FCA 48
>gnl|CDD|223388 COG0311, PDX2, Predicted glutamine amidotransferase involved in
pyridoxine biosynthesis [Coenzyme metabolism].
Length = 194
Score = 29.1 bits (66), Expect = 2.2
Identities = 21/70 (30%), Positives = 26/70 (37%), Gaps = 11/70 (15%)
Query: 103 KTWSDFCKVDGIIVPGG-------FGKRGLEGKIAACKWARENNKPFLGICLGL--QAAV 153
K D VDG+I+PGG KR G + + + P G C GL A
Sbjct: 31 KRPEDLEGVDGLIIPGGESTTIGRLLKR--YGLLEPLREFIADGLPVFGTCAGLILLAKE 88
Query: 154 IEYGRSVLGL 163
I G L
Sbjct: 89 ILDGPEQPLL 98
>gnl|CDD|225697 COG3155, ElbB, Uncharacterized protein involved in an early stage
of isoprenoid biosynthesis [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 217
Score = 29.4 bits (66), Expect = 2.2
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 18/89 (20%)
Query: 112 DGIIVPGGFGK---------RGLEGKI-----AACKWARENNKPFLGICLGLQAAVIEYG 157
D +IVPGGFG +G E + A + + KP +C+ +G
Sbjct: 87 DALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKIFG 146
Query: 158 RSVLGL--KDADTEE--EQPPGQTLEHPV 182
+ D DT E E+ + + PV
Sbjct: 147 FPLRLTIGNDIDTAEALEEMGAEHVPCPV 175
>gnl|CDD|130665 TIGR01604, PYST-C2, Plasmodium yoelii subtelomeric domain PYST-C2.
This model represents a domain of a paralogous family of
Plasmodium yoelii genes preferentially located in the
subtelomeric regions of the chromosomes. There are no
obvious homologs to these genes in any other organism.
The genes found by this model often are associated with
an N-terminal domain yoelii-specific domain such as
PYST-C1 (TIGR01601).
Length = 150
Score = 28.4 bits (63), Expect = 2.8
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Query: 197 TMRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYE 244
+ G ++ + + L++ +K E HR PDY
Sbjct: 24 VKKNGNVHDEYELKDQKHLEIYLNLNEKFE----HRSSNENSLEPDYT 67
>gnl|CDD|239507 cd03414, CbiX_SirB_C, Sirohydrochlorin cobalt chelatase (CbiX) and
sirohydrochlorin iron chelatase (SirB), C-terminal
domain. SirB catalyzes the ferro-chelation of
sirohydrochlorin to siroheme, the prosthetic group of
sulfite and nitrite reductases. CbiX is a
cobaltochelatase, responsible for the chelation of Co2+
into sirohydrochlorin, an important step in the vitamin
B12 biosynthetic pathway. CbiX often contains a
C-terminal histidine-rich region that may be important
for metal delivery and/or storage, and may also contain
an iron-sulfur center. Both CbiX and SirB are found in a
wide range of bacteria.
Length = 117
Score = 28.0 bits (63), Expect = 2.9
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 248 FLFTGVDEKEVRMEIAELRDHPYYVAVQFHPEYLSRPLRPSPPFLGLIL 296
LFTGV + ++AEL P ++F L+ PL P P +L
Sbjct: 68 LLFTGVLMDRIEEQVAELAAEPG---IEFV---LAPPLGPHPELAEALL 110
>gnl|CDD|153211 cd01740, GATase1_FGAR_AT, Type 1 glutamine amidotransferase
(GATase1)-like domain found in Formylglycinamide
ribonucleotide amidotransferase. Type 1 glutamine
amidotransferase (GATase1)-like domain found in
Formylglycinamide ribonucleotide amidotransferase
(FGAR-AT). FGAR-AT catalyzes the ATP-dependent
conversion of formylglycinamide ribonucleotide (FGAR)
and glutamine to formylglycinamidine ribonucleotide
(FGAM), ADP, Pi, and glutamate in the fourth step of the
purine biosynthetic pathway. FGAR-AT is a glutamine
amidotransferase. Glutamine amidotransferase activity
catalyses the transfer of ammonia from the amide side
chain of glutamine to an acceptor substrate. FGAR-AT
belongs to the triad family of amidotransferases having
a conserved Cys-His-Glu catalytic triad in the
glutaminase active site.
Length = 238
Score = 28.7 bits (65), Expect = 3.1
Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 21/80 (26%)
Query: 84 FDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGK----RGLEGKIAACKWARENN 139
F++E + + ++ K D+ DG+++PGGF R G IAA
Sbjct: 24 FEAEDVWHN----DLLAGRKDLDDY---DGVVLPGGFSYGDYLRA--GAIAAASPLLMEE 74
Query: 140 --------KPFLGICLGLQA 151
LGIC G Q
Sbjct: 75 VKEFAERGGLVLGICNGFQI 94
>gnl|CDD|225208 COG2327, WcaK, Polysaccharide pyruvyl transferase family protein
[Cell wall/membrane/envelope biogenesis].
Length = 385
Score = 28.9 bits (65), Expect = 3.4
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 8/52 (15%)
Query: 105 WSDFCKVDGIIVPGGFGKRGLEGKIA------ACKWARENNKP--FLGICLG 148
S K D II+ GG + + + + AR KP F G +G
Sbjct: 84 LSALGKADLIIIGGGGLLQDVTSSRSIIYYGGSILLARLAGKPTFFFGQSVG 135
>gnl|CDD|239789 cd04256, AAK_P5CS_ProBA, AAK_P5CS_ProBA: Glutamate-5-kinase (G5K)
domain of the bifunctional delta
1-pyrroline-5-carboxylate synthetase (P5CS), composed of
an N-terminal G5K (ProB) and a C-terminal glutamyl 5-
phosphate reductase (G5PR, ProA), the first and second
enzyme catalyzing proline (and, in mammals, ornithine)
biosynthesis. G5K transfers the terminal phosphoryl
group of ATP to the gamma-carboxyl group of glutamate,
and is subject to feedback allosteric inhibition by
proline or ornithine. In plants, proline plays an
important role as an osmoprotectant and, in mammals,
ornithine biosynthesis is crucial for proper ammonia
detoxification, since a G5K mutation has been shown to
cause human hyperammonaemia.
Length = 284
Score = 28.9 bits (65), Expect = 3.8
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 120 FGKRGLEGKIAACKWARENNKPFLGICLGLQAAVI 154
G G+E K+ A WA + + I G+ VI
Sbjct: 237 VGTGGMEAKVKAALWALQGGTSVV-ITNGMAGDVI 270
>gnl|CDD|130874 TIGR01815, TrpE-clade3, anthranilate synthase, alpha
proteobacterial clade. This model represents a small
clade of anthranilate synthases from alpha
proteobacteria and Nostoc (a cyanobacterium). This
enzyme is the first step in the pathway for the
biosynthesis of tryprophan from chorismate [Amino acid
biosynthesis, Aromatic amino acid family].
Length = 717
Score = 29.1 bits (65), Expect = 4.0
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 117 PGGFGKRGLEGKIAACKWARENNKPFLGICLGLQAAVIEYG 157
PG + G I A P G+CLGLQ V +G
Sbjct: 569 PGRPADFDVAGTIDAA---LARGLPVFGVCLGLQGMVEAFG 606
>gnl|CDD|237412 PRK13527, PRK13527, glutamine amidotransferase subunit PdxT;
Provisional.
Length = 200
Score = 28.3 bits (64), Expect = 4.1
Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 21/76 (27%)
Query: 111 VDGIIVPGG--------FGKRGLEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLG 162
D +I+PGG + G+ +I K E P LG C GL +L
Sbjct: 44 CDALIIPGGESTTIGRLMKREGILDEI---KEKIEEGLPILGTCAGL----------ILL 90
Query: 163 LKDADTEEEQPPGQTL 178
K+ + Q L
Sbjct: 91 AKEVGDDRVTKTEQPL 106
>gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed.
Length = 444
Score = 28.9 bits (65), Expect = 4.2
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 18 TPENVIFNP-DVKPIYKVRMLRIDRLNKTVTIGLVGKYTKFEDCYASL 64
TPE I + DVK + ++++D NKT+T+ + + F D Y L
Sbjct: 62 TPEEFIKSGIDVKT--EHEVVKVDAKNKTITVKNLKTGSIFNDTYDKL 107
>gnl|CDD|223592 COG0518, GuaA, GMP synthase - Glutamine amidotransferase domain
[Nucleotide transport and metabolism].
Length = 198
Score = 28.4 bits (64), Expect = 4.3
Identities = 14/47 (29%), Positives = 17/47 (36%), Gaps = 12/47 (25%)
Query: 139 NKPFLGICLGLQ-------AAVI-----EYGRSVLGLKDADTEEEQP 173
KP LGICLG Q V E G + + L + D
Sbjct: 79 GKPVLGICLGHQLLAKALGGKVERGPKREIGWTPVELTEGDDPLFAG 125
>gnl|CDD|235433 PRK05368, PRK05368, homoserine O-succinyltransferase; Provisional.
Length = 302
Score = 28.6 bits (65), Expect = 4.5
Identities = 25/98 (25%), Positives = 35/98 (35%), Gaps = 26/98 (26%)
Query: 75 SNRHLQLKYFDSELLSMDP-KTGNMAEYH-----KTWSDFC--KVDGIIVPGGFGKRGLE 126
N LQ D LL +D ++ N H T+ D K DG+I+ G +E
Sbjct: 59 GNTPLQ---VDIHLLRIDSHESKNTPAEHLENFYCTFEDIKDEKFDGLIITGA----PVE 111
Query: 127 GK-----------IAACKWARENNKPFLGICLGLQAAV 153
WA+ + L IC QAA+
Sbjct: 112 QLPFEDVDYWDELKEILDWAKTHVTSTLFICWAAQAAL 149
>gnl|CDD|235552 PRK05670, PRK05670, anthranilate synthase component II;
Provisional.
Length = 189
Score = 28.2 bits (64), Expect = 4.7
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 139 NKPFLGICLGLQAAVIEYG 157
P LG+CLG QA +G
Sbjct: 72 KVPILGVCLGHQAIGEAFG 90
>gnl|CDD|177170 MTH00108, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 602
Score = 28.7 bits (65), Expect = 5.0
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 290 PFLGLILAAAGK 301
P +GL+LAA GK
Sbjct: 212 PLMGLLLAATGK 223
>gnl|CDD|180178 PRK05637, PRK05637, anthranilate synthase component II;
Provisional.
Length = 208
Score = 27.9 bits (62), Expect = 5.5
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 141 PFLGICLGLQAAVIEYGRSV 160
P LGICLG QA + +G V
Sbjct: 75 PLLGICLGFQALLEHHGGKV 94
>gnl|CDD|233389 TIGR01382, PfpI, intracellular protease, PfpI family. The member
of this family from Pyrococcus horikoshii has been
solved to 2 Angstrom resolution. It is an
ATP-independent intracellular protease that crystallizes
as a hexameric ring. Cys-101 is proposed as the active
site residue in a catalytic triad with the adjacent
His-102 and a Glu residue from an adjacent monomer. A
member of this family from Bacillus subtilis, GSP18, has
been shown to be expressed in response to several forms
of stress. A role in the degradation of small peptides
has been suggested. A closely related family consists of
the thiamine biosynthesis protein ThiJ and its homologs
[Protein fate, Degradation of proteins, peptides, and
glycopeptides].
Length = 166
Score = 27.8 bits (62), Expect = 5.8
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 112 DGIIVPGGFGKRGLEGKIAACKWAR---ENNKPFLGICLGLQ 150
D +++PGG L A + R E KP IC G Q
Sbjct: 62 DALVIPGGRAPEYLRLNNKAVRLVREFVEKGKPVAAICHGPQ 103
>gnl|CDD|110319 pfam01306, LacY_symp, LacY proton/sugar symporter. This family is
closely related to the sugar transporter family.
Length = 413
Score = 28.2 bits (63), Expect = 5.9
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 291 FLGLI-LAAAGKLDAYIEKECR 311
+LG + A AG ++AYIEK R
Sbjct: 113 YLGFVFSAGAGAIEAYIEKVSR 134
>gnl|CDD|171876 PRK13152, hisH, imidazole glycerol phosphate synthase subunit HisH;
Provisional.
Length = 201
Score = 27.9 bits (62), Expect = 6.3
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 94 KTGNMAEYHKTWSDFCKVDGIIVPG-GFGKRGLE-----GKIAACK-WARENNKPFLGIC 146
K G + K D K D +++PG G K ++ G I A K KP LGIC
Sbjct: 21 KIGAINFIAKNPKDLQKADKLLLPGVGSFKEAMKNLKELGFIEALKEQVLVQKKPILGIC 80
Query: 147 LGLQ 150
LG+Q
Sbjct: 81 LGMQ 84
>gnl|CDD|235147 PRK03643, PRK03643, altronate oxidoreductase; Provisional.
Length = 471
Score = 28.3 bits (64), Expect = 6.4
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 5 ESVRAKISMFCHVTPENVIFNPDVKPIYKVRMLRIDRLNKTVT 47
+S+ ++ NV+ D+KP Y+ R +RI LN T
Sbjct: 252 KSLAKELPF--DKAGLNVLIVDDIKP-YRERKVRI--LNGAHT 289
>gnl|CDD|211613 TIGR00882, 2A0105, oligosaccharide:H+ symporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 396
Score = 28.2 bits (63), Expect = 6.5
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 291 FLGLI-LAAAGKLDAYIEKECR 311
+LG + A AG ++AYIEK R
Sbjct: 108 YLGFVFSAGAGAIEAYIEKVSR 129
>gnl|CDD|153225 cd03131, GATase1_HTS, Type 1 glutamine amidotransferase
(GATase1)-like domain found in homoserine
trans-succinylase (HTS). Type 1 glutamine
amidotransferase (GATase1)-like domain found in
homoserine trans-succinylase (HTS). HTS, the first
enzyme in methionine biosynthesis in Escherichia coli,
transfers a succinyl group from succinyl-CoA to
homoserine forming succinyl homoserine. It has been
suggested that the succinyl group of succinyl-CoA is
initially transferred to an enzyme nucleophile before
subsequent transfer to homoserine. The catalytic triad
typical of GATase1 domains is not conserved in this
GATase1-like domain. However, in common with GATase1
domains a reactive cys residue is found in the sharp
turn between a beta strand and an alpha helix termed the
nucleophile elbow. It has been proposed that this cys is
in the active site of the molecule. However, as succinyl
has been found bound to a conserved lysine residue, this
conserved cys may play a role in dimer formation. HTS
activity is tightly regulated by several mechanisms
including feedback inhibition and proteolysis. It
represents a critical control point for cell growth and
viability.
Length = 175
Score = 27.6 bits (62), Expect = 6.6
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 133 KWARENNKPFLGICLGLQAAV-IEYG 157
WA+ + L C AA+ YG
Sbjct: 92 DWAKTHVTSTLFSCWAAMAALYYFYG 117
>gnl|CDD|237764 PRK14607, PRK14607, bifunctional glutamine
amidotransferase/anthranilate phosphoribosyltransferase;
Provisional.
Length = 534
Score = 28.1 bits (63), Expect = 6.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 141 PFLGICLGLQAAVIEYGRSVLGLK 164
P LG+CLG QA +G ++ K
Sbjct: 75 PILGVCLGHQAIGYAFGGKIVHAK 98
>gnl|CDD|237139 PRK12564, PRK12564, carbamoyl phosphate synthase small subunit;
Reviewed.
Length = 360
Score = 28.1 bits (64), Expect = 6.8
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 137 ENNKPFLGICLGLQ 150
E P GICLG Q
Sbjct: 246 EKKIPIFGICLGHQ 259
>gnl|CDD|181107 PRK07765, PRK07765, para-aminobenzoate synthase component II;
Provisional.
Length = 214
Score = 27.7 bits (62), Expect = 7.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 141 PFLGICLGLQAAVIEYGRSV 160
P LG+CLG QA + +G +V
Sbjct: 78 PLLGVCLGHQAIGVAFGATV 97
>gnl|CDD|233573 TIGR01781, Trep_dent_lipo, Treponema denticola clustered
lipoprotein. This model represents a family of six
predicted lipoproteins from a region of about 20
tandemly arranged genes in the Treponema denticola
genome. Two other neighboring genes share the
lipoprotein signal peptide region but do not show more
extensive homology. The function of this locus is
unknown.
Length = 412
Score = 28.0 bits (62), Expect = 7.6
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 209 PEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDH 268
P+ +S +K+ +K+++ ++ Y K YV DY K F +G DE V + R
Sbjct: 199 PDKESLIKMFESYMNKLDKNDKYHYTTKKYYVLDYVKGNFTNSGYDEYIV-FFTNDSRKE 257
Query: 269 PYYVAVQFHPEY 280
+ HP
Sbjct: 258 EEE-DGEHHPWK 268
>gnl|CDD|236980 PRK11780, PRK11780, isoprenoid biosynthesis protein with
amidotransferase-like domain; Provisional.
Length = 217
Score = 27.4 bits (62), Expect = 7.6
Identities = 10/16 (62%), Positives = 11/16 (68%), Gaps = 3/16 (18%)
Query: 106 SDFCKVDGIIVPGGFG 121
DF D +IVPGGFG
Sbjct: 84 EDF---DALIVPGGFG 96
>gnl|CDD|233378 TIGR01368, CPSaseIIsmall, carbamoyl-phosphate synthase, small
subunit. This model represents the whole of the small
chain of the glutamine-dependent form (EC 6.3.5.5) of
carbamoyl phosphate synthase, CPSase II. The C-terminal
domain has glutamine amidotransferase activity. Note
that the sequence from the mammalian urea cycle form has
lost the active site Cys, resulting in an
ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases
of pyrimidine biosynthesis, arginine biosynthesis, and
the urea cycle may be encoded by one or by several
genes, depending on the species [Purines, pyrimidines,
nucleosides, and nucleotides, Pyrimidine ribonucleotide
biosynthesis].
Length = 358
Score = 28.0 bits (63), Expect = 8.0
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 112 DGIIVPGGFGK-RGLEGKIAACKWARENNKPFLGICLGLQ 150
DGI + G G ++ I + P GICLG Q
Sbjct: 216 DGIFLSNGPGDPAAVKPAIETIRKL-LEKIPIFGICLGHQ 254
>gnl|CDD|223579 COG0505, CarA, Carbamoylphosphate synthase small subunit [Amino
acid transport and metabolism / Nucleotide transport and
metabolism].
Length = 368
Score = 27.9 bits (63), Expect = 8.1
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 18/48 (37%)
Query: 246 HGFLFTGVDEKEVR--------------MEIAELRDHPYYVAVQFHPE 279
HG+ VDE + +E +D P + +VQ+HPE
Sbjct: 300 HGY---AVDEDSLVETLKVTHVNLNDGTVEGIRHKDLPAF-SVQYHPE 343
>gnl|CDD|181635 PRK09065, PRK09065, glutamine amidotransferase; Provisional.
Length = 237
Score = 27.6 bits (62), Expect = 9.2
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 11/52 (21%)
Query: 269 PYYVAVQFHPEYLSRPLRPSPPFL-GLILAAAGKLDAY---IEKECRQVTET 316
P+ VQFHPE+ + + + A A L R+V+E
Sbjct: 177 PHAWGVQFHPEF-------TAHIMRAYLRARADCLRREGLDARTLLREVSEA 221
>gnl|CDD|233048 TIGR00605, rad4, DNA repair protein rad4. All proteins in this
family for which functions are known are involved in
targeting nucleotide excision repair to specific regions
of the genome.This family is based on the phylogenomic
analysis of JA Eisen (1999, Ph.D. Thesis, Stanford
University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 713
Score = 27.9 bits (62), Expect = 9.5
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 237 KKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYV 272
K+ + D E FL E + I +L++HP YV
Sbjct: 462 KRTIDDIEDQEFLRRHESEGIPK-SIQDLKNHPLYV 496
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.138 0.421
Gapped
Lambda K H
0.267 0.0770 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,340,782
Number of extensions: 1705624
Number of successful extensions: 1671
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1626
Number of HSP's successfully gapped: 102
Length of query: 326
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 229
Effective length of database: 6,635,264
Effective search space: 1519475456
Effective search space used: 1519475456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.4 bits)