RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17159
(326 letters)
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine
amidotransferase, glutaminase domain,
5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET:
CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Length = 289
Score = 352 bits (905), Expect = e-122
Identities = 142/274 (51%), Positives = 184/274 (67%), Gaps = 4/274 (1%)
Query: 38 RIDRLNKTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGN 97
+ K +I LVGKYTK DCYAS+ +ALEH++ N L L Y DS L +T +
Sbjct: 18 LYFQSMKICSIALVGKYTKLRDCYASVFKALEHSALAINHKLNLMYIDSIDLEKITETED 77
Query: 98 MAEYHKTWSDFCKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGLQAAVIEYG 157
++H+ W CK DGI+VPGGFG RG GK+ A WAR PFLG+ LG+Q AVIE+
Sbjct: 78 PVKFHEAWQKLCKADGILVPGGFGIRGTLGKLQAISWARTKKIPFLGVXLGMQLAVIEFA 137
Query: 158 RSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHETHFKPEHKSKLKL 217
R+ L LKDAD+ E +P P+V+ MPEHNPGN+GGTMRLG T FK E+ S L+
Sbjct: 138 RNCLNLKDADSTEFRP---NAPVPLVIDMPEHNPGNLGGTMRLGIRRTVFKTEN-SILRK 193
Query: 218 LYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFH 277
LYG+ IEERHRHR+EVN + +E++ F G D RMEI EL +HPY+V VQFH
Sbjct: 194 LYGDVPFIEERHRHRFEVNPNLIKQFEQNDLSFVGQDVDGDRMEIIELANHPYFVGVQFH 253
Query: 278 PEYLSRPLRPSPPFLGLILAAAGKLDAYIEKECR 311
PE+ SRP++PSPP+LGL+LAA G L+AY+++ C+
Sbjct: 254 PEFSSRPMKPSPPYLGLLLAATGNLNAYLQQGCK 287
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A
{Sulfolobus solfataricus}
Length = 535
Score = 346 bits (890), Expect = e-117
Identities = 127/329 (38%), Positives = 176/329 (53%), Gaps = 49/329 (14%)
Query: 4 TESVRAKISMFCHVTPENVIFNPDVKPIYKV-RMLR--------IDRLN----------- 43
+ R KI++F +V ++++ + DV+ Y+V +L + RL
Sbjct: 219 DDETRRKIALFTNVKVDHIVSSYDVETSYEVPIILESQKLVSKILSRLKLEDRQVDLTDW 278
Query: 44 -------------KTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLS 90
KT+ I LVGKYTK +D Y S+ A+ HAS + +L + +S L
Sbjct: 279 ISFVNNIKGINSKKTINIALVGKYTKLKDSYISIKEAIYHASAYIGVRPKLIWIESTDLE 338
Query: 91 MDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGLQ 150
D K N+ E V+GIIV GFG RG EGKI A K+ARE+N PFLGIC G Q
Sbjct: 339 SDTK--NLNEI------LGNVNGIIVLPGFGSRGAEGKIKAIKYAREHNIPFLGICFGFQ 390
Query: 151 AAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPE-HNPGNMGGTMRLGKHETHFKP 209
+++E+ R VLGL +A++ E P T + PV+ + E N +GGTMRLG + K
Sbjct: 391 LSIVEFARDVLGLSEANSTEINP--NT-KDPVITLLDEQKNVTQLGGTMRLGAQKIILKE 447
Query: 210 EHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHP 269
+ LYG K + ERHRHRYEVN KYV E G + +G+ E + +EI EL +
Sbjct: 448 G--TIAYQLYG-KKVVYERHRHRYEVNPKYVDILEDAGLVVSGISENGL-VEIIELPSNK 503
Query: 270 YYVAVQFHPEYLSRPLRPSPPFLGLILAA 298
++VA Q HPE+ SRP PSP +LG I A
Sbjct: 504 FFVATQAHPEFKSRPTNPSPIYLGFIRAV 532
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics
initiative, RSGI, structural genomics, ligase; HET: GLN;
2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10
PDB: 1vcn_A 1vcm_A
Length = 550
Score = 344 bits (886), Expect = e-116
Identities = 130/332 (39%), Positives = 180/332 (54%), Gaps = 53/332 (15%)
Query: 4 TESVRAKISMFCHVTPENVIFNPDVKPIYKV-RML------------------------- 37
E VR K+++F +V P +V +P V+ +Y+V +L
Sbjct: 228 PEEVRRKVALFTNVRPGHVFSSPTVEHLYEVPLLLEEQGLGRAVERALGLEAVIPNLSFW 287
Query: 38 -----RIDRLNKTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMD 92
+ +TV I + GKY K D Y SL AL HA + +++K+ D+E L
Sbjct: 288 QEAVRVLKHPERTVKIAIAGKYVKMPDAYLSLLEALRHAGIKNRARVEVKWVDAESLE-- 345
Query: 93 PKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGLQAA 152
++ E F V GI+VPGGFG RG+EGK+ A ++ARE P+LGICLGLQ A
Sbjct: 346 --AADLEEA------FRDVSGILVPGGFGVRGIEGKVRAAQYARERKIPYLGICLGLQIA 397
Query: 153 VIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPE-HNPGNMGGTMRLGKHETHFKPEH 211
VIE+ R+V GLK A++ E P T HPV+ MPE +GGTMRLG KP
Sbjct: 398 VIEFARNVAGLKGANSTEFDP--HT-PHPVIDLMPEQLEVEGLGGTMRLGDWPMRIKPG- 453
Query: 212 KSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGV-----DEKEVRMEIAELR 266
+ L LYG K+++ ERHRHRYEVN YV E+ G + + +E EL+
Sbjct: 454 -TLLHRLYG-KEEVLERHRHRYEVNPLYVDGLERAGLVVSATTPGMRGRGAGLVEAIELK 511
Query: 267 DHPYYVAVQFHPEYLSRPLRPSPPFLGLILAA 298
DHP+++ +Q HPE+ SRP+RPSPPF+G + AA
Sbjct: 512 DHPFFLGLQSHPEFKSRPMRPSPPFVGFVEAA 543
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming),
cytidine 5 triphosphate synthase, ammonia lyase; 2.30A
{Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB:
2ad5_A*
Length = 545
Score = 339 bits (871), Expect = e-113
Identities = 114/337 (33%), Positives = 162/337 (48%), Gaps = 59/337 (17%)
Query: 4 TESVRAKISMFCHVTPENVIFNPDVKPIYKV-RML------------------------- 37
+ RAKI++FC+V + VI DV IYK+ +L
Sbjct: 217 PANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEW 276
Query: 38 -----RIDRLNKTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMD 92
VTIG+VGKY + D Y S+ AL+H + + +K DS+ +
Sbjct: 277 EQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETR 336
Query: 93 PKTGNMAEYHKTWSDFCKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGLQAA 152
E +D I+VPGGFG RG+EG I ++ARENN P+LGICLG+Q A
Sbjct: 337 G-----VEI------LKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVA 385
Query: 153 VIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPE-----------HNPGNMGGTMRLG 201
+I+Y R V +++A++ E P ++PVV + E ++GGTMRLG
Sbjct: 386 LIDYARHVANMENANSTEFVP--DC-KYPVVALITEWRDENGNVEVRSEKSDLGGTMRLG 442
Query: 202 KHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRME 261
+ + S ++ LY I ERHRHRYEVN + E G G + +E
Sbjct: 443 AQQCQLVDD--SLVRQLYN-APTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVE 499
Query: 262 IAELRDHPYYVAVQFHPEYLSRPLRPSPPFLGLILAA 298
I E+ +HP++VA QFHPE+ S P P F G + AA
Sbjct: 500 IIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAA 536
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase;
glutaminase domain, trypsanosoma brucei, ligase,
acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Length = 273
Score = 287 bits (737), Expect = 2e-97
Identities = 101/271 (37%), Positives = 136/271 (50%), Gaps = 17/271 (6%)
Query: 43 NKTVTIGLVGKYTKF-EDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEY 101
N TV I VGKY + D Y S+ + EH L + Y DSE L
Sbjct: 6 NPTVRIAFVGKYLQDAGDTYFSVLQCFEHCQIALQVRLDILYVDSEELEGPN-------A 58
Query: 102 HKTWSDFCKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVL 161
+ DGI VPGGFG RG++GK AA + AR NN P+ G+ LG+Q AVIE R+V+
Sbjct: 59 DEARKALLGCDGIFVPGGFGNRGVDGKCAAAQVARMNNIPYFGVXLGMQVAVIELSRNVV 118
Query: 162 GLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHETHFKPEHKSKLKLLYGN 221
G DA++EE H VV M MG M LG + + E S + +Y
Sbjct: 119 GWSDANSEEFNK---ESTHQVVRIMDCDR-NKMGANMHLGACDVYIV-EKSSIMAKIYSK 173
Query: 222 KDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEV----RMEIAELRDHPYYVAVQFH 277
+ + ERHRHRYEVN Y D K G + V + R+E E +++AVQFH
Sbjct: 174 SNIVVERHRHRYEVNTAYFEDLRKAGLCISAVTDPTFSSRCRVEAVENPSLRFFLAVQFH 233
Query: 278 PEYLSRPLRPSPPFLGLILAAAGKLDAYIEK 308
PE++S P+ P+P +L + AAA K + +K
Sbjct: 234 PEFISTPMDPAPTYLSFMAAAAKKDYVWPQK 264
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP
synthetase, UTP, glutamine, amidotransferase, ligase,
phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A
3ihl_A*
Length = 294
Score = 50.7 bits (122), Expect = 2e-07
Identities = 19/30 (63%), Positives = 21/30 (70%)
Query: 5 ESVRAKISMFCHVTPENVIFNPDVKPIYKV 34
SV+ KISMFCHV PE VI DV IY+V
Sbjct: 246 TSVKEKISMFCHVEPEQVICVHDVSSIYRV 275
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved
protein, structural genomics; 1.90A {Methanocaldococcus
jannaschii}
Length = 186
Score = 45.0 bits (107), Expect = 7e-06
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 16/75 (21%)
Query: 103 KTWSDFCKVDGIIVPGG--------FGKRGLEGKIAACKWARENNKPFLGICLGLQ--AA 152
K D +D +I+PGG K GL KI + +N P LG C G+ +
Sbjct: 30 KRVEDLEGIDALIIPGGESTAIGKLMKKYGLLEKI------KNSNLPILGTCAGMVLLSK 83
Query: 153 VIEYGRSVLGLKDAD 167
+ +L L D
Sbjct: 84 GTGINQILLELMDIT 98
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II,
structural genomics, protein structure initiative; 2.30A
{Listeria innocua}
Length = 254
Score = 44.2 bits (105), Expect = 2e-05
Identities = 41/210 (19%), Positives = 72/210 (34%), Gaps = 49/210 (23%)
Query: 110 KVDGIIVPGG-------FGKRGLEGK-----------IAACKWARENNKPFLGICLGLQA 151
VDG+++ GG + + + IA + A + KP IC G+Q
Sbjct: 61 LVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGMQL 120
Query: 152 AVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHETHFKPEH 211
+ G ++ D + + L+H +LG H +P
Sbjct: 121 VNVALGGTLY----QDISQV--ETKALQH------------LQRVDEQLGSHTIDIEPT- 161
Query: 212 KSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYY 271
S+L + NK + H + K + F T + +E E + P +
Sbjct: 162 -SELAKHHPNKKLVNSLHHQF--IKK--LAP----SFKVTARTADGM-IEAVEGDNLPSW 211
Query: 272 V-AVQFHPEYLSRPLRPSPP-FLGLILAAA 299
VQ+HPE + + S F L+ +
Sbjct: 212 YLGVQWHPELMFQTDPESEQLFQALVDESK 241
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, transferase; 2.30A {Thermus thermophilus}
SCOP: c.23.16.1
Length = 200
Score = 43.2 bits (103), Expect = 3e-05
Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 30/96 (31%)
Query: 62 ASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPG--- 118
S +ALE A + ++ DPK + D +++PG
Sbjct: 16 RSAAKALEAAGFSV------------AVAQDPK------------AHEEADLLVLPGQGH 51
Query: 119 -GFGKRGLE--GKIAACKWARENNKPFLGICLGLQA 151
G R + G + + E PFLGIC+G+Q
Sbjct: 52 FGQVMRAFQESGFVERVRRHLERGLPFLGICVGMQV 87
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Length = 315
Score = 43.9 bits (103), Expect = 3e-05
Identities = 31/191 (16%), Positives = 52/191 (27%), Gaps = 31/191 (16%)
Query: 128 KIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMP 187
++ + + P G CLG + + L +
Sbjct: 113 NLSIQSFDDGDYFPVWGTCLGFEELSLLISGECL------LTATDTVDVAMPLN------ 160
Query: 188 EHNPGNMGGTMRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHG 247
G H F+ L L + + H++ ++ K EK
Sbjct: 161 -FTGG--------QLHSRMFQNFPTELLLSL---AVEPLTANFHKWSLSVKNFTMNEKLK 208
Query: 248 FLF----TGVDEKEVRMEIAELRDHPYYVAVQFHPEYLSRPLRPSP--PFLGLILAAAGK 301
F T D K + E +P Y VQ+HPE + + A
Sbjct: 209 KFFNVLTTNTDGKIEFISTMEGYKYPVY-GVQWHPEKAPYEWKNLDGISHAPNAVKTAFY 267
Query: 302 LDAYIEKECRQ 312
L + E R+
Sbjct: 268 LAEFFVNEARK 278
>1gpw_B Amidotransferase HISH; lyase/transferase, complex
(lyase/transferase), histidine biosynthesis,
glutaminase, glutamine amidotransferase; 2.4A
{Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A
2wjz_B
Length = 201
Score = 41.7 bits (99), Expect = 1e-04
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 12/49 (24%)
Query: 112 DGIIVPG-G-FG-------KRGLEGKIAACKWARENNKPFLGICLGLQA 151
D + +PG G FG + L + + E+ + +G+CLG+Q
Sbjct: 44 DLLFIPGVGHFGEGMRRLRENDLIDFV---RKHVEDERYVVGVCLGMQL 89
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel,
alpha/beta three layer sandwich, lyase transferase; HET:
5RP; 2.90A {Thermotoga maritima}
Length = 208
Score = 39.0 bits (91), Expect = 9e-04
Identities = 21/103 (20%), Positives = 32/103 (31%), Gaps = 14/103 (13%)
Query: 103 KTWSDFCKVDGIIVPGG--------FGKRGLEGKIAACKWARENNKPFLGICLGLQ---A 151
K VDG+I+PGG + ++ K+ N P C G+
Sbjct: 50 KLPEQLDMVDGLILPGGESTTMIRILKEMDMDEKL---VERINNGLPVFATCAGVILLAK 106
Query: 152 AVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNM 194
+ Y + LG+ D E Q V +P
Sbjct: 107 RIKNYSQEKLGVLDITVERNAYGRQVESFETFVEIPAVGKDPF 149
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich,
rossmann fold, glutaminase; 1.73A {Bacillus subtilis}
SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Length = 196
Score = 38.9 bits (91), Expect = 0.001
Identities = 17/76 (22%), Positives = 24/76 (31%), Gaps = 14/76 (18%)
Query: 103 KTWSDFCKVDGIIVPGG--------FGKRGLEGKIAACKWARENNKPFLGICLGLQ---A 151
K +VDG+I+PGG + + KP G C GL
Sbjct: 31 KRPEQLNEVDGLILPGGESTTMRRLIDTYQFMEPL---REFAAQGKPMFGTCAGLIILAK 87
Query: 152 AVIEYGRSVLGLKDAD 167
+ LGL +
Sbjct: 88 EIAGSDNPHLGLLNVV 103
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2,
predicted glutamine amidotransferase, PSI; HET: MSE;
1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Length = 219
Score = 38.6 bits (90), Expect = 0.001
Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 14/76 (18%)
Query: 103 KTWSDFCKVDGIIVPGG--------FGKRGLEGKIAACKWARENNKPFLGICLGLQ---A 151
K +DG+++PGG + GL + K KP G C GL
Sbjct: 53 KKSEQLEGLDGLVLPGGESTTMRRLIDRYGLMEPL---KQFAAAGKPMFGTCAGLILLAK 109
Query: 152 AVIEYGRSVLGLKDAD 167
++ Y LGL D
Sbjct: 110 RIVGYDEPHLGLMDIT 125
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel,
chorismate, type 1 glutamine amidotransfera phenazine
biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP}
PDB: 3r74_A* 3r76_A*
Length = 645
Score = 39.1 bits (91), Expect = 0.002
Identities = 26/163 (15%), Positives = 50/163 (30%), Gaps = 46/163 (28%)
Query: 117 PGGFGKRGLEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQ 176
P G + A + + KPF+ +CL Q G L ++ P Q
Sbjct: 499 PSDAGDPRIARLYAWLRHLIDEGKPFMAVCLSHQILNAILG-IPLVRREV-------PNQ 550
Query: 177 TLEHPVVVYMPEHNPGNMGGTMRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVN 236
++ + ++ G R+G + T+ +D+++
Sbjct: 551 GIQVEIDLF---------GQRERVGFYNTYV----------AQTVRDEMDVDGVGTVA-- 589
Query: 237 KKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPE 279
+ E+ LR P + ++QFH E
Sbjct: 590 ----------------ISRDPRTGEVHALR-GPTFSSMQFHAE 615
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis,
structural genomics, NPPSFA; 1.90A {Thermus
thermophilus}
Length = 191
Score = 36.0 bits (83), Expect = 0.007
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 10/56 (17%)
Query: 103 KTWSDFCKVDGIIVPGG-FG-------KRGLEGKIAACKWARENNKPFLGICLGLQ 150
+ + +IVPGG + G+E ++ K E + G C G
Sbjct: 32 RKKEHLEGLKALIVPGGESTTIGKLAREYGIEDEV--RKRVEEGSLALFGTCAGAI 85
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria,
transferase; HET: PG4; 1.62A {Plasmodium falciparum}
SCOP: c.23.16.1 PDB: 4ads_G
Length = 227
Score = 35.4 bits (81), Expect = 0.014
Identities = 30/199 (15%), Positives = 43/199 (21%), Gaps = 58/199 (29%)
Query: 103 KTWSDFCKVDGIIVPGG----FGKRGLEGKI----AACKWARENNKPFLGICLGLQAAVI 154
+ D DG+++PGG + A + KP G C G
Sbjct: 36 RNVHDLGLCDGLVIPGGESTTVRRCCAYENDTLYNALVHFIHVLKKPIWGTCAGCILLSK 95
Query: 155 EYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHETHFKPEHK-- 212
L + T+ G F
Sbjct: 96 NVENIKLYSNFGNKFSFGGLDITICR-----------------NFYGSQNDSFICSLNII 138
Query: 213 SKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPY-- 270
S + R + E+ DE +V +A Y
Sbjct: 139 SDSSAFKKDLTAACIRAPYIREILS----------------DEVKV---LATFSHESYGP 179
Query: 271 --YVAV--------QFHPE 279
AV FHPE
Sbjct: 180 NIIAAVEQNNCLGTVFHPE 198
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM
O-transsuccinylase, HTS, (TM0881), structural genomics;
2.52A {Thermotoga maritima}
Length = 312
Score = 34.7 bits (79), Expect = 0.030
Identities = 36/194 (18%), Positives = 62/194 (31%), Gaps = 50/194 (25%)
Query: 97 NMAEYHKTWSD--FCKVDGIIVPGG------FGKRGLEGKI-AACKWARENNKPFLGICL 147
++ +++ T+S K DG I+ G F + ++ +W+R N + IC
Sbjct: 96 HILKFYTTFSAVKDRKFDGFIITGAPVELLPFEEVDYWEELTEIMEWSRHNVYSTMFICW 155
Query: 148 GLQAAV-IEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHETH 206
QA + YG P L + G ++
Sbjct: 156 AAQAGLYYFYGI---------------PKYELPQKLS-----------------GVYKHR 183
Query: 207 FKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELR 266
+ L G+ D H EV K+ D +K L + E + + +
Sbjct: 184 VAKDS----VLFRGHDDFFWAPHSRYTEVKKE---DIDKVPELEILAESDEAGVYVVANK 236
Query: 267 DHPYYVAVQFHPEY 280
+ V HPEY
Sbjct: 237 SER-QIFVTGHPEY 249
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis,
amino-acid biosynthesis, homoserine transacetylase,
homoserine transsuccinylase; 2.00A {Bacillus cereus}
PDB: 2ghr_A
Length = 301
Score = 34.3 bits (78), Expect = 0.037
Identities = 32/193 (16%), Positives = 62/193 (32%), Gaps = 47/193 (24%)
Query: 97 NMAEYHKTWSDF--CKVDGIIVPGG------FGKRGLEGKI-AACKWARENNKPFLGICL 147
++ ++KT+ D K DG+I+ G F + ++ ++++ N L IC
Sbjct: 84 HLTSFYKTFRDIENEKFDGLIITGAPVETLSFEEVDYWEELKRIMEYSKTNVTSTLHICW 143
Query: 148 GLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHETHF 207
G QA + + L+ + + +HE
Sbjct: 144 GAQAGLYHHYGV--------------QKYPLKEKM---------------FGVFEHEVRE 174
Query: 208 KPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRD 267
+ LL G + H EV + D + L + +E + + ++
Sbjct: 175 QHVK-----LLQGFDELFFAVHSRHTEVRES---DIREVKELTLLANSEEAGVHLVIGQE 226
Query: 268 HPYYVAVQFHPEY 280
V H EY
Sbjct: 227 G-RQVFALGHSEY 238
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.8 bits (79), Expect = 0.043
Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 36/153 (23%)
Query: 2 DDTESVRAKISMFCHVTPENVI--FNPDV-KPIYKVRMLRIDRLNKTVTIGLVGKYTKFE 58
D E ++ F +V + YK M I KT +
Sbjct: 59 DAVSGTLRLFWTLLS-KQEEMVQKFVEEVLRINYKFLMSPI----KTEQRQPSMMTRMYI 113
Query: 59 DCYASLTRALE-HASYHSNR---HLQLKYFDSELLSMDPKTGNMAEYHKTWSDFCKVDGI 114
+ L + A Y+ +R +L+L+ LL + P +
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLR---QALLELRP-----------------AKNV 153
Query: 115 IVPG--GFGKRGLEGKIAACKWARENNKPFLGI 145
++ G G GK + + C + K I
Sbjct: 154 LIDGVLGSGKTWV--ALDVCLSYKVQCKMDFKI 184
Score = 31.4 bits (70), Expect = 0.46
Identities = 52/375 (13%), Positives = 109/375 (29%), Gaps = 115/375 (30%)
Query: 39 IDRLNKTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNM 98
++ L K + + +T D +++ + R L+ K +++ LL + N+
Sbjct: 199 LEMLQKLLYQ-IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL----NV 253
Query: 99 AEYHKTWSDF---CKV----------DGIIV-----------PGGFGKRGLEGKIAACKW 134
+ K W+ F CK+ D + ++ + K+
Sbjct: 254 -QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL--KY 310
Query: 135 A--------RENNK--PFLGICLGLQAAVI-------EYGRSV----------LGLKDAD 167
RE P L + A I + + V L +
Sbjct: 311 LDCRPQDLPREVLTTNPRR---LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 168 TEEEQP--------------PGQTLEHPVV-VYMPEHNPGNMGGTMR----LGKHETHFK 208
E + P L ++ + + + + + + K
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLS--LIWFDVIKSDVMVVVNKLHKYSLVEKQ----P 421
Query: 209 PEHKSKLKLLY-GNKDKIEER---HR---HRYEVNKKY-----VPDYE-KHGFLFTG--V 253
E + +Y K K+E HR Y + K + +P Y ++ + G +
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481
Query: 254 DEKEVRMEIAELRDHPYYVAVQFHPEYLSRPLR---PSPPFLGLILAAAGKLDAYIEKEC 310
E + R ++ +F L + +R + G IL +L Y
Sbjct: 482 KNIEHPERMTLFRM--VFLDFRF----LEQKIRHDSTAWNASGSILNTLQQLKFYK---- 531
Query: 311 RQVTETDDDDSGKIE 325
+ + D +
Sbjct: 532 PYICDNDPKYERLVN 546
Score = 31.4 bits (70), Expect = 0.55
Identities = 47/273 (17%), Positives = 78/273 (28%), Gaps = 83/273 (30%)
Query: 3 DTESVRAKISMFC-HVTPEN--------VIFNPDVK-PIYKVRMLRI-----------DR 41
+ + + I + P +F P P + L +
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT-IL--LSLIWFDVIKSDVMVV 407
Query: 42 LNKTVTIGLVGKYTKFE-----DCYASLTRALEH-ASYHS---NRHLQLKYFDSELLSMD 92
+NK LV K K Y L LE+ + H + + K FDS+ L
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467
Query: 93 PKTG----------NMAEYHKTWSDFCKV--DGIIVPGGFGKRGLEGKIAACKWARENNK 140
E+ + + F V D F R LE KI A +
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD-------F--RFLEQKIRHDSTAWNASG 518
Query: 141 PFLGICLGLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRL 200
L L+ Y + D D + E+ +V L
Sbjct: 519 SILNTLQQLK----FYKPYI---CDNDPKYER----------LVNAILDF---------L 552
Query: 201 GKHETH-FKPEHKS--KLKLLYGNKDKIEERHR 230
K E + ++ ++ L+ ++ EE H+
Sbjct: 553 PKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585
Score = 27.1 bits (59), Expect = 9.1
Identities = 24/141 (17%), Positives = 49/141 (34%), Gaps = 40/141 (28%)
Query: 153 VIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRL-----GKHETHF 207
V + +S+L ++EE ++H ++ + GT+RL K E
Sbjct: 38 VQDMPKSIL------SKEE------IDHIIMS------KDAVSGTLRLFWTLLSKQEEMV 79
Query: 208 KPEHKSKLKLLYG-NKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDE----------- 255
+ + L++ Y I+ R + + Y+ E+ L+
Sbjct: 80 QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI---EQRDRLYNDNQVFAKYNVSRLQP 136
Query: 256 -KEVRMEIAELRDHPYYVAVQ 275
++R + ELR V +
Sbjct: 137 YLKLRQALLELRPAK-NVLID 156
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine
nucleotide biosy process, ligase; HET: XMP; 2.72A
{Plasmodium falciparum}
Length = 556
Score = 32.6 bits (75), Expect = 0.16
Identities = 27/161 (16%), Positives = 46/161 (28%), Gaps = 40/161 (24%)
Query: 133 KWARENNKPFLGICLGLQ------------AAVIEYGRSVLGLKDADTEEEQPPGQTLEH 180
++ E P GIC G+Q + EYG + + + D +
Sbjct: 77 EYFLEKKIPIFGICYGMQEIAVQMNGEVKKSKTSEYGCTDVNILRNDNINNITYCRNFGD 136
Query: 181 PVVVYMPEHNPGNMGGTMRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYV 240
N M T L F+ + + D++ + +
Sbjct: 137 SSSAMDLYSNYKLMNETCCL------FENIKSDITTVWMNHNDEVTK------------I 178
Query: 241 PDYEKHGFLFTGVDEKEVRMEIAELRDH--PYYVAVQFHPE 279
P+ F E I + + Y VQ+HPE
Sbjct: 179 PE----NFYLVSSSENC---LICSIYNKEYNIY-GVQYHPE 211
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure,
ATP-binding, cytoplasm, ligase, nucleotide-binding,
purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga
maritima}
Length = 213
Score = 31.7 bits (73), Expect = 0.21
Identities = 21/69 (30%), Positives = 25/69 (36%), Gaps = 15/69 (21%)
Query: 94 KTGNMAEY--HKTWSDFCKVDGIIVPGGF--GKRGLEGKIAA--------CKWARENNKP 141
G Y + II+PGGF G G +AA K A E K
Sbjct: 25 INGFEPSYVGLDD--KLDDYELIILPGGFSYGDYLRPGAVAAREKIAFEIAKAA-ERGKL 81
Query: 142 FLGICLGLQ 150
+GIC G Q
Sbjct: 82 IMGICNGFQ 90
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.22
Identities = 26/141 (18%), Positives = 34/141 (24%), Gaps = 60/141 (42%)
Query: 36 ML------------RIDRLN------KTVTIGLVGKYTKF------EDCYASLTRALEHA 71
ML +++ N K V I LV + Y L L A
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG-LNLTLRKA 396
Query: 72 SY----------HSNRHLQLKY--------FDSELL----------------SMDPKTGN 97
S R L+ F S LL S + K
Sbjct: 397 KAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ 456
Query: 98 MAEYH-KTWSDFCKVDGIIVP 117
+ Y SD + G I
Sbjct: 457 IPVYDTFDGSDLRVLSGSISE 477
Score = 31.9 bits (72), Expect = 0.35
Identities = 50/283 (17%), Positives = 76/283 (26%), Gaps = 107/283 (37%)
Query: 62 ASLTRALEHASYHSNRHLQLK-------------YFDSELLSMDPKTG--NMAEYHKTWS 106
+ L R A + L + Y S +S P G +A Y T
Sbjct: 196 SELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC-PLIGVIQLAHYVVT-- 252
Query: 107 DFCKVDGIIVPGGFGK--RGLEGK---------IAACK-WA--RENNKPFLGIC--LGL- 149
K+ G PG +G G IA W + + + + +G+
Sbjct: 253 --AKLLGF-TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR 309
Query: 150 -QAAVIEYGRSVL---GLKDADTEEEQPP-------GQTLEH--PVVVYMPEHNPGNMGG 196
A Y + L L+D+ E P T E V H P
Sbjct: 310 CYEA---YPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG--- 363
Query: 197 TMRLGKH--------ETHF----KPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYE 244
K + P+ S LYG + + +++ +P E
Sbjct: 364 -----KQVEISLVNGAKNLVVSGPPQ--S----LYGLNLTLRKAKA-PSGLDQSRIPFSE 411
Query: 245 K-----HGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPEYLS 282
+ + FL P VA FH L
Sbjct: 412 RKLKFSNRFL-------------------P--VASPFHSHLLV 433
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A
{Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A
1ons_A 1izz_A
Length = 291
Score = 31.5 bits (71), Expect = 0.27
Identities = 27/152 (17%), Positives = 50/152 (32%), Gaps = 18/152 (11%)
Query: 68 LEHASYHSNRHLQLKYFD--SELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGGFGK--- 122
E+ + + +F+ L K ++ S++ I VPGG G
Sbjct: 104 FEYWAMPHKDEKVMPFFEQHKSLFRNPKKLADVVASLNADSEY---AAIFVPGGHGALIG 160
Query: 123 -RGLEGKIAACKWARENNKPFLGICLGLQAAV-------IEYGRSVLGLKDADTEEEQPP 174
+ AA +WA +N++ + +C G A + G S+ DA ++Q P
Sbjct: 161 LPESQDVAAALQWAIKNDRFVISLCHGPAAFLALRHGDNPLNGYSICAFPDA--ADKQTP 218
Query: 175 GQTLEHPVVVYMPEHNPGNMGGTMRLGKHETH 206
+ + MG +
Sbjct: 219 EIGYMPGHLTWYFGEELKKMGMNIINDDITGR 250
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold,
structural genomics, joint center for structural
genomics, JCSG; 1.70A {Thermotoga maritima} SCOP:
c.23.16.1
Length = 239
Score = 30.9 bits (70), Expect = 0.41
Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 7/71 (9%)
Query: 97 NMAEYHKTWSDFCKVDGIIVPGG-------FGKRGLEGKIAACKWARENNKPFLGICLGL 149
+ + K + +++ GG L+ + + + PFLGICLG
Sbjct: 44 DTPKGEKLERPLEEYSLVVLLGGYMGAYEEEKYPFLKYEFQLIEEILKKEIPFLGICLGS 103
Query: 150 QAAVIEYGRSV 160
Q G SV
Sbjct: 104 QMLAKVLGASV 114
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase,
transferas; 2.70A {Streptococcus mutans}
Length = 236
Score = 30.5 bits (69), Expect = 0.53
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 10/64 (15%)
Query: 97 NMAEYHKTWSDFCKVDGIIVPGG----------FGKRGLEGKIAACKWARENNKPFLGIC 146
+ Y K D D +I+ GG F + ++ + A ++ K +G+C
Sbjct: 32 KVYRYEKLPKDIDDFDMLILMGGPQSPSSTKKEFPYYDAQAEVKLIQKAAKSEKIIVGVC 91
Query: 147 LGLQ 150
LG Q
Sbjct: 92 LGAQ 95
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome,
PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS,
structural genomics; 2.03A {Escherichia coli} SCOP:
c.23.16.2
Length = 193
Score = 29.9 bits (68), Expect = 0.73
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 11/86 (12%)
Query: 106 SDFCKVDGIIVPGGFGK---RGLEGKIAACKWARENNKPFLGICLGLQ----AAVIEYGR 158
++F D +++PGG RG + + + KP IC G Q A VI GR
Sbjct: 85 AEF---DALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIR-GR 140
Query: 159 SVLGLKDADTEEEQPPGQTLEHPVVV 184
+ +K + + + + VVV
Sbjct: 141 KLTAVKPIIIDVKNAGAEFYDQEVVV 166
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf;
substrate channeling, amidotransferase, TIM-barrel AS A
SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae}
SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A
1ox4_A
Length = 555
Score = 30.5 bits (69), Expect = 0.77
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 12/51 (23%)
Query: 110 KVDGIIVPG--GFG-------KRGLEGKIAACKWARENNKPFLGICLGLQA 151
+I+PG +G RG E I + E+ KP +GI +GLQA
Sbjct: 44 GTSRLILPGVGNYGHFVDNLFNRGFEKPI---REYIESGKPIMGIXVGLQA 91
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for
structural genomics of infectious disease chaperone;
2.30A {Bacillus anthracis}
Length = 212
Score = 29.6 bits (67), Expect = 1.2
Identities = 7/40 (17%), Positives = 12/40 (30%), Gaps = 4/40 (10%)
Query: 112 DGIIVPGGFGKRGLEGKIAACKWAR---ENNKPFLGICLG 148
D +I+PGG + + + IC
Sbjct: 76 DLLILPGGTTWSEEIHQ-PILERIGQALKIGTIVAAICGA 114
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann
fold, cytosol; 2.05A {Arabidopsis thaliana}
Length = 396
Score = 29.7 bits (67), Expect = 1.2
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 9/61 (14%)
Query: 106 SDFCKVDGIIVPGGFGK---RGLEGKIAACKWARENNKPFLGICLG---LQAAVIEYGRS 159
S + D +++PGG E + K + KP IC G L AA + GR
Sbjct: 281 SSY---DALVIPGGRAPEYLALNEHVLNIVKEFMNSEKPVASICHGQQILAAAGVLKGRK 337
Query: 160 V 160
Sbjct: 338 C 338
Score = 28.2 bits (63), Expect = 4.0
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 106 SDFCKVDGIIVPGGFGK---RGLEGKIAACKWARENNKPFLGICLGLQ 150
S + DG+++PGG + K + KP IC G
Sbjct: 88 SKY---DGLVIPGGRAPEYLALTASVVELVKEFSRSGKPIASICHGQL 132
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics,
protein structure initiative; 2.06A {Bacillus subtilis}
Length = 206
Score = 29.3 bits (66), Expect = 1.3
Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 7/80 (8%)
Query: 112 DGIIVPGGF-GKRGLEGKIAACKWARENNKPFLGICLG---LQAAVIEYGRSVLGL---K 164
+ +++ GG + + K A + N P IC L + S G
Sbjct: 65 NLLVMIGGDSWSNDNKKLLHFVKTAFQKNIPIAAICGAVDFLAKNGLLNNHSHTGNFVYL 124
Query: 165 DADTEEEQPPGQTLEHPVVV 184
D ++ +P +E V
Sbjct: 125 WKDYKQYKPISSFVEKQAVR 144
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2;
HET: MSE; 1.30A {Methylobacillus flagellatus} PDB:
3l83_A*
Length = 250
Score = 29.4 bits (66), Expect = 1.5
Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 9/62 (14%)
Query: 106 SDFCKVDGIIVPGGFGKRGLEGK----IAACKWARE---NNKPFLGICLGLQAAVIEYGR 158
++ G+ + GG R+ P +G CLG Q G
Sbjct: 44 AEIRDCSGLAMMGG--PMSANDDLPWMPTLLALIRDAVAQRVPVIGHCLGGQLLAKAMGG 101
Query: 159 SV 160
V
Sbjct: 102 EV 103
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 2.1
Identities = 7/31 (22%), Positives = 9/31 (29%), Gaps = 14/31 (45%)
Query: 212 KSKLKLLYGNKDKIEERHRHRYEVNKKYVPD 242
K LK K++ K Y D
Sbjct: 19 KQALK-------KLQASL-------KLYADD 35
Score = 26.8 bits (58), Expect = 7.4
Identities = 5/23 (21%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 170 EEQPPGQTLEHPVVVYMPEHNPG 192
E+Q + L+ + +Y + P
Sbjct: 18 EKQAL-KKLQASLKLYADDSAPA 39
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A
{Thermococcus onnurineus} PDB: 1g2i_A
Length = 168
Score = 27.8 bits (63), Expect = 2.8
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 17/89 (19%)
Query: 106 SDFCKVDGIIVPGGFGK---RGLEGKIAACKWARENNKPFLGICLGLQ----AAVIEYGR 158
+F D +++PGG R E + + E++KP IC G Q A V++ GR
Sbjct: 62 DEF---DALVLPGGKAPEIVRLNEKAVMITRRMFEDDKPVASICHGPQILISAKVLK-GR 117
Query: 159 ---SVLGLKDADTEEEQPPGQTLEHPVVV 184
S + ++D + + ++ VVV
Sbjct: 118 RGTSTITIRD---DVINAGAEWIDAEVVV 143
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella
burnetii}
Length = 527
Score = 28.6 bits (65), Expect = 2.9
Identities = 16/72 (22%), Positives = 24/72 (33%), Gaps = 24/72 (33%)
Query: 141 PFLGICLGLQ------------AAVIEYGRSVLGLKD-----ADTEEEQPPGQTLEHPV- 182
P LGIC G+Q A E+G + L + + E++ P V
Sbjct: 84 PVLGICYGMQTMAYQLGGKVNRTAKAEFGHAQLRVLNPAFLFDGIEDQVSPQGEPLLDVW 143
Query: 183 ------VVYMPE 188
V +P
Sbjct: 144 MSHGDIVSELPP 155
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis,
pyridoxal 5'-phosphate, thiocystei aminoacrylate,
enzyme-product complex; HET: PDA; 1.55A {Synechocystis
SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Length = 390
Score = 28.7 bits (65), Expect = 2.9
Identities = 3/23 (13%), Positives = 8/23 (34%)
Query: 2 DDTESVRAKISMFCHVTPENVIF 24
+R ++ +V P +
Sbjct: 59 QLIAQLRQALAETFNVDPNTITI 81
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase,
N-type ATP pyrophosphata transferase (glutamine
amidotransferase); HET: AMP CIT; 2.20A {Escherichia
coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Length = 525
Score = 28.6 bits (65), Expect = 3.5
Identities = 11/72 (15%), Positives = 21/72 (29%), Gaps = 24/72 (33%)
Query: 141 PFLGICLGLQ------------AAVIEYGRSVLGLKD-----ADTEEEQPPGQTLEHPV- 182
P G+C G+Q + E+G + + + + E+ V
Sbjct: 81 PVFGVCYGMQTMAMQLGGHVEASNEREFGYAQVEVVNDSALVRGIEDALTADGKPLLDVW 140
Query: 183 ------VVYMPE 188
V +P
Sbjct: 141 MSHGDKVTAIPS 152
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 27.5 bits (62), Expect = 4.3
Identities = 3/20 (15%), Positives = 5/20 (25%)
Query: 307 EKECRQVTETDDDDSGKIEF 326
E + Q T +
Sbjct: 46 EAQVHQHGGTKKMGEKAYKL 65
>3ca8_A Protein YDCF; two domains, alpha/beta fold, helix bundle,
structural genom structure 2 function project, S2F,
unknown function; 1.80A {Escherichia coli}
Length = 266
Score = 27.8 bits (61), Expect = 4.9
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 110 KVDGIIVPGGFGKRGLEGKIAACKWARENNKPFL 143
+ D +I+ G + AACK AR+ P L
Sbjct: 36 QADCVILAGN---AVMPTIDAACKIARDQQIPLL 66
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 27.1 bits (61), Expect = 5.7
Identities = 3/20 (15%), Positives = 6/20 (30%)
Query: 307 EKECRQVTETDDDDSGKIEF 326
++ V T + F
Sbjct: 46 NEDVFAVGGTHKMGEKSLPF 65
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics,
unknown function; 1.65A {Escherichia coli} SCOP:
c.23.16.2 PDB: 1oy1_A
Length = 232
Score = 27.3 bits (60), Expect = 5.7
Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 16/65 (24%)
Query: 112 DGIIVPGGFGK--------------RGLEGKIAACKWARENNKPFLGICLG--LQAAVIE 155
D +IVPGGFG A + + KP +C+ + + +
Sbjct: 92 DALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFD 151
Query: 156 YGRSV 160
+ +
Sbjct: 152 FPLRL 156
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, ALS collaborative crystallography, isopr
biosynthesis; 1.90A {Ehrlichia chaffeensis}
Length = 242
Score = 27.3 bits (60), Expect = 6.0
Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 15/61 (24%)
Query: 112 DGIIVPGGFGK---------------RGLEGKIAACKWARENNKPFLGICLGLQAAVIEY 156
D +++PGG+G L A + KP +C+ V
Sbjct: 109 DMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISPAVVVALL 168
Query: 157 G 157
Sbjct: 169 K 169
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase;
HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1
PDB: 1i7q_B 1i7s_B*
Length = 192
Score = 27.0 bits (61), Expect = 6.2
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 141 PFLGICLGLQAAVIEYG 157
P +GICLG QA V YG
Sbjct: 78 PIIGICLGHQAIVEAYG 94
>2a9v_A GMP synthase; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2, ligase;
2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Length = 212
Score = 27.1 bits (61), Expect = 6.3
Identities = 18/98 (18%), Positives = 41/98 (41%), Gaps = 28/98 (28%)
Query: 86 SELLSMDPKTGNMAEYHKTWSDFCKVDGIIVPGG----FGKRGLEGKIAACKWARENNKP 141
++++ S+ +DG+++ GG + L+ + K+ ++N P
Sbjct: 40 TKIVP----------NDIDSSELDGLDGLVLSGGAPNIDEE--LDKLGSVGKYIDDHNYP 87
Query: 142 FLGICLGLQ------------AAVIEYGRSVLGLKDAD 167
LGIC+G Q A E+G++ + + ++
Sbjct: 88 ILGICVGAQFIALHFGASVVKAKHPEFGKTKVSVMHSE 125
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme,
oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A
{Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Length = 270
Score = 27.4 bits (61), Expect = 6.6
Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 16/57 (28%)
Query: 195 GGT-----MRLGKHETHFKPEHKSKLKLLYGNK-----------DKIEERHRHRYEV 235
GG+ ++ + +PE +++ L+Y N+ D+ + R +V
Sbjct: 144 GGSGITPMYQIIQAVLRDQPEDHTEMHLVYANRTEDDILLRDELDRWAAEYPDRLKV 200
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase,
gatases, riken structural genomics/proteomics
initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP:
c.23.16.1 PDB: 2d7j_A
Length = 189
Score = 26.9 bits (60), Expect = 6.9
Identities = 11/37 (29%), Positives = 13/37 (35%), Gaps = 12/37 (32%)
Query: 141 PFLGICLGLQ------------AAVIEYGRSVLGLKD 165
P LGICLG Q EY + + D
Sbjct: 74 PILGICLGHQLIAKFFGGKVGRGEKAEYSLVEIEIID 110
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan
biosynthesis, glutamine amidotransferase, allosteric
interaction, lyase; 2.50A {Sulfolobus solfataricus}
SCOP: c.23.16.1
Length = 195
Score = 27.0 bits (61), Expect = 7.3
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 141 PFLGICLGLQA 151
P LG+CLG QA
Sbjct: 79 PILGVCLGHQA 89
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding,
ATP binding, purine nucleotide biosynthetic pathway,
structural genomics; 2.10A {Thermus thermophilus} PDB:
2ywc_A*
Length = 503
Score = 27.4 bits (62), Expect = 7.9
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 12/49 (24%)
Query: 141 PFLGICLGLQ------------AAVIEYGRSVLGLKDADTEEEQPPGQT 177
P LGIC G+Q A EYG+++L +
Sbjct: 73 PLLGICYGMQLLAQELGGRVERAGRAEYGKALLTRHEGPLFRGLEGEVQ 121
>3g4n_A Aerolysin; toxin, cytolytic toxin, pore-forming toxin, membrane,
secret; 2.10A {Aeromonas hydrophila} PDB: 3g4o_A 1pre_A
1z52_A 3c0n_A 3c0m_A 3c0o_A*
Length = 470
Score = 27.1 bits (59), Expect = 9.7
Identities = 10/53 (18%), Positives = 24/53 (45%)
Query: 193 NMGGTMRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEK 245
+ G +R G + + P+++ + ++ RY+ +K+Y+P K
Sbjct: 317 TLSGFLRWGGNAWYTHPDNRPNWNHTFVIGPYKDKASSIRYQWDKRYIPGEVK 369
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene,
phosphoprotein, GMP synthetase, guanine monophosphate
synthetase, chromosomal rearrangement; HET: XMP; 2.5A
{Homo sapiens}
Length = 697
Score = 27.2 bits (61), Expect = 9.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 139 NKPFLGICLGLQAAVIEYGRSV 160
KP LGIC G+Q +G +V
Sbjct: 101 GKPVLGICYGMQMMNKVFGGTV 122
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.138 0.421
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,372,108
Number of extensions: 340318
Number of successful extensions: 1010
Number of sequences better than 10.0: 1
Number of HSP's gapped: 975
Number of HSP's successfully gapped: 87
Length of query: 326
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 232
Effective length of database: 4,077,219
Effective search space: 945914808
Effective search space used: 945914808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.6 bits)