RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17159
(326 letters)
>d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 250
Score = 229 bits (586), Expect = 2e-75
Identities = 111/261 (42%), Positives = 147/261 (56%), Gaps = 22/261 (8%)
Query: 44 KTVTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHK 103
+TV I + GKY K D Y SL AL HA + +++K+ D+E L E
Sbjct: 2 RTVKIAIAGKYVKMPDAYLSLLEALRHAGIKNRARVEVKWVDAESL----------EAAD 51
Query: 104 TWSDFCKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGL 163
F V GI+VPGGFG RG+EGK+ A ++ARE P+LGICLGLQ AVIE+ R+V GL
Sbjct: 52 LEEAFRDVSGILVPGGFGVRGIEGKVRAAQYARERKIPYLGICLGLQIAVIEFARNVAGL 111
Query: 164 KDADTEEEQPPGQTLEHPVVVYMPEHNP-GNMGGTMRLGKHETHFKPEHKSKLKLLYGNK 222
K A++ E P HPV+ MPE +GGTMRLG L K
Sbjct: 112 KGANSTEFDPHT---PHPVIDLMPEQLEVEGLGGTMRLGDWPMRI---KPGTLLHRLYGK 165
Query: 223 DKIEERHRHRYEVNKKYVPDYEKHGFLFTGV-----DEKEVRMEIAELRDHPYYVAVQFH 277
+++ ERHRHRYEVN YV E+ G + + +E EL+DHP+++ +Q H
Sbjct: 166 EEVLERHRHRYEVNPLYVDGLERAGLVVSATTPGMRGRGAGLVEAIELKDHPFFLGLQSH 225
Query: 278 PEYLSRPLRPSPPFLGLILAA 298
PE+ SRP+RPSPPF+G + AA
Sbjct: 226 PEFKSRPMRPSPPFVGFVEAA 246
>d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 258
Score = 228 bits (582), Expect = 2e-74
Identities = 93/262 (35%), Positives = 132/262 (50%), Gaps = 22/262 (8%)
Query: 46 VTIGLVGKYTKFEDCYASLTRALEHASYHSNRHLQLKYFDSELLSMDPKTGNMAEYHKTW 105
VTIG+VGKY + D Y S+ AL+H + + +K DS+ + +
Sbjct: 4 VTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVE-----------TRGV 52
Query: 106 SDFCKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKD 165
+D I+VPGGFG RG+EG I ++ARENN P+LGICLG+Q A+I+Y R V +++
Sbjct: 53 EILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMEN 112
Query: 166 ADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHET--------HFKPEHKSKLKL 217
A++ E P ++PVV + E N +R K + L
Sbjct: 113 ANSTEFVPDC---KYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVR 169
Query: 218 LYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFH 277
N I ERHRHRYEVN + E G G + +EI E+ +HP++VA QFH
Sbjct: 170 QLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFH 229
Query: 278 PEYLSRPLRPSPPFLGLILAAA 299
PE+ S P P F G + AA+
Sbjct: 230 PEFTSTPRDGHPLFAGFVKAAS 251
>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 288
Score = 64.9 bits (157), Expect = 1e-12
Identities = 28/194 (14%), Positives = 52/194 (26%), Gaps = 32/194 (16%)
Query: 108 FCKVDGIIVPGGFGKRGLEG---------KIAACKWARENNKPFLGICLGLQAAVIEYGR 158
F ++GI+ PGG ++ + + P G CLG + +
Sbjct: 57 FKSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISG 116
Query: 159 SVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHETHFKPEHKSKLKLL 218
L + M G+ + ++L L
Sbjct: 117 ECLLTA----------------------TDTVDVAMPLNFTGGQLHSRMFQNFPTELLLS 154
Query: 219 YGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYV-AVQFH 277
+ H+ V + + K F + I+ + + Y V VQ+H
Sbjct: 155 LAVEPLTANFHKWSLSVKNFTMNEKLKKFFNVLTTNTDGKIEFISTMEGYKYPVYGVQWH 214
Query: 278 PEYLSRPLRPSPPF 291
PE +
Sbjct: 215 PEKAPYEWKNLDGI 228
>d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2
{Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Length = 218
Score = 52.6 bits (125), Expect = 9e-09
Identities = 24/193 (12%), Positives = 42/193 (21%), Gaps = 15/193 (7%)
Query: 103 KTWSDFCKVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLG 162
+ D DG+++PG + A N L G +L
Sbjct: 35 RNVHDLGLCDGLVIPG-GESTTVRRCCAYENDTLYNALVHFIHVLKKPIWGTCAGCILLS 93
Query: 163 LKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHETHFKPEHKSKLKLLYGNK 222
+ + G + G + + +
Sbjct: 94 KNVENIKLYSNFGN--KFSFGGLDITICRNFYGSQNDSFICSLNIISDSS----AFKKDL 147
Query: 223 DKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPEYLS 282
R + E+ V G + IA + + FHPE L
Sbjct: 148 TAACIRAPYIREILSDEVKVLATFSHESYGPNI------IAAVEQNNCL-GTVFHPE-LL 199
Query: 283 RPLRPSPPFLGLI 295
F +
Sbjct: 200 PHTAFQQYFYEKV 212
>d1s1ma2 c.37.1.10 (A:1-266) CTP synthase PyrG, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 266
Score = 49.8 bits (119), Expect = 1e-07
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 4 TESVRAKISMFCHVTPENVIFNPDVKPIYKV 34
+ RAKI++FC+V + VI DV IYK+
Sbjct: 217 PANERAKIALFCNVPEKAVISLKDVDSIYKI 247
>d2vo1a1 c.37.1.10 (A:1-273) CTP synthase PyrG, N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 273
Score = 49.5 bits (118), Expect = 1e-07
Identities = 20/34 (58%), Positives = 23/34 (67%)
Query: 4 TESVRAKISMFCHVTPENVIFNPDVKPIYKVRML 37
SV+ KISMFCHV PE VI DV IY+V +L
Sbjct: 223 DTSVKEKISMFCHVEPEQVICVHDVSSIYRVPLL 256
>d1vcoa2 c.37.1.10 (A:11-282) CTP synthase PyrG, N-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 272
Score = 48.7 bits (116), Expect = 3e-07
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 3 DTESVRAKISMFCHVTPENVIFNPDVKPIYKVRML 37
E VR K+++F +V P +V +P V+ +Y+V +L
Sbjct: 217 VPEEVRRKVALFTNVRPGHVFSSPTVEHLYEVPLL 251
>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 195
Score = 35.6 bits (81), Expect = 0.003
Identities = 30/176 (17%), Positives = 47/176 (26%), Gaps = 43/176 (24%)
Query: 107 DFCKVDGIIVPGGFGKRGLE---GKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGL 163
+ D +I+ G G G P LG+CLG QA +G +
Sbjct: 42 ERIDPDRLIISPGPGTPEKREDIGVSLDVIKYLGKRTPILGVCLGHQAIGYAFGAKI--- 98
Query: 164 KDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHETHFKPEHKSKLKLLYGNKD 223
++ + S L L YG
Sbjct: 99 ------------------------------RRARKVFHGKISNIILVNNSPLSLYYGIAK 128
Query: 224 KIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPE 279
+ + H V++ + P + ++P Y VQFHPE
Sbjct: 129 EFKATRYHSLVVDEVHRPLIVDAISAEDNE------IMAIHHEEYPIY-GVQFHPE 177
>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase,
small subunit C-terminal domain {Escherichia coli
[TaxId: 562]}
Length = 228
Score = 34.4 bits (78), Expect = 0.012
Identities = 30/182 (16%), Positives = 42/182 (23%), Gaps = 50/182 (27%)
Query: 101 YHKTWSDFCKV--DGIIVPGGFGKRGLEGK-IAACKWARENNKPFLGICLGLQAAVIEYG 157
+ D K+ DGI + G G I A + E + P GICLG Q + G
Sbjct: 69 AQTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASG 128
Query: 158 RSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHETHFKPEHKSKLKL 217
G K ++
Sbjct: 129 ---------------------------AKTVKMKFGHHGGNHPVKDVEKNVVMITAQ--- 158
Query: 218 LYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFH 277
E V K + D G D P + + Q +
Sbjct: 159 -NHGFAVDEATLPANLRVTHKSLFDGTLQGI---------------HRTDKPAF-SFQGN 201
Query: 278 PE 279
PE
Sbjct: 202 PE 203
>d2ghra1 c.23.16.8 (A:17-297) Homoserine O-succinyltransferase HTS
(MetA) {Bacillus cereus [TaxId: 1396]}
Length = 281
Score = 33.5 bits (76), Expect = 0.027
Identities = 36/199 (18%), Positives = 61/199 (30%), Gaps = 47/199 (23%)
Query: 97 NMAEYHKTWSDFC--KVDGIIVPGG------FGK-RGLEGKIAACKWARENNKPFLGICL 147
++ ++KT+ D K DG+I+ G F + E ++++ N L IC
Sbjct: 68 HLTSFYKTFRDIENEKFDGLIITGAPVETLSFEEVDYWEELKRIMEYSKTNVTSTLHICW 127
Query: 148 GLQAAVIEYGRSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHETHF 207
G QA + + V Y M G
Sbjct: 128 GAQAGL-----------------------YHHYGVQKYPL---KEKMFG----VFEHEVR 157
Query: 208 KPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRD 267
+ KLL G + H EV + D + L + +E + + ++
Sbjct: 158 EQHV----KLLQGFDELFFAPHSRHTEVRE---SDIREVKELTLLANSEEAGVHLVIGQE 210
Query: 268 HPYYVAVQFHPEYLSRPLR 286
V H EY L+
Sbjct: 211 GR-QVFALGHSEYSCDTLK 228
>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG
{Serratia marcescens [TaxId: 615]}
Length = 192
Score = 32.1 bits (72), Expect = 0.050
Identities = 10/92 (10%), Positives = 19/92 (20%), Gaps = 1/92 (1%)
Query: 188 EHNPGNMGGTMRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHG 247
G+ G K + + + + + V + +
Sbjct: 81 GICLGHQAIVEAYGGQVGQAGEILHGKASAIAHDGEGMFAGMANPLPVARYHSLVGSNIP 140
Query: 248 FLFTGVDEKEVRMEIAELRDHPYYVAVQFHPE 279
T + QFHPE
Sbjct: 141 ADLTVNARFGEMVMAVRDDRRRVC-GFQFHPE 171
>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli
[TaxId: 562]}
Length = 205
Score = 31.0 bits (69), Expect = 0.12
Identities = 30/181 (16%), Positives = 44/181 (24%), Gaps = 38/181 (20%)
Query: 101 YHKTWSDFC--KVDGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGLQAAVIEYGR 158
+ T + GII+ GG E A ++ E P G+C G+Q ++ G
Sbjct: 37 WDVTEAQIRDFNPSGIILSGGPESTTEENSPRAPQYVFEAGVPVFGVCYGMQTMAMQLG- 95
Query: 159 SVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHETHFKPEHKSKLKLL 218
E VV G GK H
Sbjct: 96 -------GHVEASNEREFGYAQVEVVNDSALVRGIEDALTADGKPLLDVWMSH------- 141
Query: 219 YGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHP 278
+ ++ I + +Y VQFHP
Sbjct: 142 ----------GDKVTAIPSDFITVASTESC----------PFAIMANEEKRFY-GVQFHP 180
Query: 279 E 279
E
Sbjct: 181 E 181
>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 188
Score = 30.7 bits (68), Expect = 0.16
Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Query: 191 PGNMGGTMRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLF 250
G+ G + S +++ ++D+I + R +V + ++ + ++ F
Sbjct: 80 LGHQLIAKFFGGKVGRGEKAEYSLVEIEIIDEDEIFKGLPKRLKVWESHMDEVKELPPKF 139
Query: 251 TGVDEKE-VRMEIAELRDHPYYVAVQFHPE 279
+ E +E + + P Y VQFHPE
Sbjct: 140 KILARSETCPIEAMKHEELPIY-GVQFHPE 168
>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 196
Score = 30.6 bits (68), Expect = 0.19
Identities = 15/91 (16%), Positives = 23/91 (25%), Gaps = 8/91 (8%)
Query: 189 HNPGNMGGTMRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPDYEKHGF 248
K + G +I H E+ +PD
Sbjct: 87 ALHFGASVVKAKHPEFGKTKVSVMHSENIFGGLPSEITVWENHNDEIIN--LPDDFTLAA 144
Query: 249 LFTGVDEKEVRMEIAELRDHPYYVAVQFHPE 279
+++ + P Y A QFHPE
Sbjct: 145 -----SSATCQVQGFYHKTRPIY-ATQFHPE 169
>d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus
subtilis [TaxId: 1423]}
Length = 195
Score = 28.7 bits (63), Expect = 0.71
Identities = 25/182 (13%), Positives = 44/182 (24%), Gaps = 45/182 (24%)
Query: 103 KTWSDFCKVDGIIVPGGFGKRGLE-----GKIAACKWARENNKPFLGICLGLQAAVIEYG 157
K +VDG+I+PGG + + KP G C GL E
Sbjct: 31 KRPEQLNEVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTCAGLIILAKEIA 90
Query: 158 RSVLGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHETHFKPEHKSKLKL 217
S NP + + ++ + +
Sbjct: 91 GSD-----------------------------NPHLGLLNVVVERNSFGRQVDSFEADLT 121
Query: 218 LYGNKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFH 277
+ G + + + + + G I + + FH
Sbjct: 122 IKGLDEPFTGVFIRAPHILE--AGENVEVLSEHNG--------RIVAAKQGQFL-GCSFH 170
Query: 278 PE 279
PE
Sbjct: 171 PE 172
>d1jvna2 c.23.16.1 (A:-3-229) GAT subunit, HisH, (or domain) of
imidazoleglycerolphosphate synthase HisF {Baker's yeast
(Saccharomyces cerevisiae), His7 [TaxId: 4932]}
Length = 232
Score = 28.0 bits (61), Expect = 1.3
Identities = 26/176 (14%), Positives = 45/176 (25%), Gaps = 27/176 (15%)
Query: 110 KVDGIIVPGGFG------KRGLEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGL 163
+I+PG G + E+ KP +GIC+GLQA
Sbjct: 44 GTSRLILPGVGNYGHFVDNLFNRGFEKPIREYIESGKPIMGICVGLQALFAGSVE----- 98
Query: 164 KDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHETHFKPEHKSKLKLLYGNKD 223
+ + E +G + F + + ++
Sbjct: 99 ----SPKSTGLNYIDFKLSRFDDSEKPVPEIGWNSCIPSENLFFGLDPYKRYYFVHSFAA 154
Query: 224 KIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPE 279
+ + E + + + F K A QFHPE
Sbjct: 155 ILNSEKKKNLENDGWKIAKAKYGSEEFIAAVNKN------------NIFATQFHPE 198
>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic
domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 287
Score = 27.4 bits (61), Expect = 2.0
Identities = 5/33 (15%), Positives = 13/33 (39%)
Query: 235 VNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRD 267
NK ++ + ++ + +E+ LR
Sbjct: 70 ANKHFMVGHPVIFYIMVDDVSRMPLIELGPLRS 102
>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 283
Score = 27.4 bits (61), Expect = 2.2
Identities = 6/37 (16%), Positives = 13/37 (35%)
Query: 235 VNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYY 271
K ++ + H ++FT R+ + R
Sbjct: 75 AEKHFMVGHRVHYYVFTDQPAAVPRVTLGTGRQLSVL 111
>d1rrza_ a.7.10.1 (A:) Glycogen synthesis protein GlgS {Escherichia
coli [TaxId: 562]}
Length = 66
Score = 25.4 bits (55), Expect = 2.7
Identities = 10/16 (62%), Positives = 11/16 (68%), Gaps = 2/16 (12%)
Query: 95 TGNMAEYHKTWSDFCK 110
TGNM E H+TW FC
Sbjct: 34 TGNMDEEHRTW--FCA 47
>d2akoa1 c.73.1.3 (A:2-251) Glutamate 5-kinase {Campylobacter jejuni
[TaxId: 197]}
Length = 250
Score = 27.0 bits (58), Expect = 2.7
Identities = 22/150 (14%), Positives = 46/150 (30%), Gaps = 6/150 (4%)
Query: 10 KISMFCHVTPENVIFNPDVKPIYKVRMLRIDRLNKTVTIGLVGKYTKFEDCYASLTRALE 69
K+ +T ++ K + L I E +
Sbjct: 88 KLGGQILLTGKDFDSRKATKHAKNAID-MMINLGILPIINENDATAIEEIVFGDNDSLSA 146
Query: 70 HASYHSNRHLQLKYFDSE-LLSMDPKTGNMAEYHKTW---SDFCKVDGIIVPGGFGKRGL 125
+A++ + L + D + +P + A+ + + I G G+
Sbjct: 147 YATHFFDADLLVILSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGI 206
Query: 126 EGKIAACKWARENNKPFLGICLGLQAAVIE 155
K+ A K+ E+NK + G +V +
Sbjct: 207 VTKLKAAKFLLEHNKKMF-LASGFDLSVAK 235
>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin
reductase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 235
Score = 27.0 bits (58), Expect = 2.7
Identities = 19/169 (11%), Positives = 43/169 (25%), Gaps = 15/169 (8%)
Query: 112 DGIIVPGGFGKRGLEGKIAACKWARENNKPFLGICLGLQAAVIEYGRSVLGLKDADTEEE 171
D II+ GG G G AA + A+ + V+++ +
Sbjct: 5 DLIIIGGGSG-----GLAAAKEAAK----------FDKKVMVLDFVTPTPLGTNWGLGGT 49
Query: 172 QPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRH 231
+ ++ K E K + + + + + + +R
Sbjct: 50 CVNVGCIPKKLMHQAALLGQALKDSRNYGWKLEDTVKHDWEKMTESVQNHIGSLNWGYRV 109
Query: 232 RYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPEY 280
K + + + + + +A P Y
Sbjct: 110 ALREKKVVYENAYGKFIGPHKIMATNNKGKEKVYSAERFLIATGERPRY 158
>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A
(SCRP-27A, EllB) {Escherichia coli [TaxId: 562]}
Length = 217
Score = 26.5 bits (58), Expect = 3.7
Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 14/80 (17%)
Query: 107 DFCKVDGIIVPGGFG--------------KRGLEGKIAACKWARENNKPFLGICLGLQAA 152
D ++D +IVPGGFG A + + KP +C+
Sbjct: 82 DAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAML 141
Query: 153 VIEYGRSVLGLKDADTEEEQ 172
+ + D + +
Sbjct: 142 PKIFDFPLRLTIGTDIDTAE 161
>d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of
imidazoleglycerolphosphate synthase HisF {Thermotoga
maritima [TaxId: 2336]}
Length = 200
Score = 25.7 bits (55), Expect = 6.9
Identities = 15/97 (15%), Positives = 26/97 (26%), Gaps = 4/97 (4%)
Query: 183 VVYMPEHNPGNMGGTMRLGKHETHFKPEHKSKLKLLYGNKDKIEERHRHRYEVNKKYVPD 242
+ E + L + + K + + Y V+
Sbjct: 88 QLLFEESEEAPGVKGLSLIEGNVVKLRSRRLPHMGWNEVIFKDTFPNGYYYFVHTYRAVC 147
Query: 243 YEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPE 279
E+H T D + + +R QFHPE
Sbjct: 148 EEEHVLGTTEYDGEIF---PSAVRKGRIL-GFQFHPE 180
>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 202
Score = 25.6 bits (55), Expect = 8.3
Identities = 23/179 (12%), Positives = 35/179 (19%), Gaps = 45/179 (25%)
Query: 106 SDFCKVDGIIVPGGFGKRGLEGKIA-----ACKWARENNKPFLGICLGLQAAVIEYGRSV 160
+DG+++PGG K KP G C GL
Sbjct: 39 EQLEGLDGLVLPGGESTTMRRLIDRYGLMEPLKQFAAAGKPMFGTCAGLILLAKRI---- 94
Query: 161 LGLKDADTEEEQPPGQTLEHPVVVYMPEHNPGNMGGTMRLGKHETHFKPEHKSKLKLLYG 220
V E + G M T+ + G
Sbjct: 95 -----------------------VGYDEPHLGLMDITVERNSFGRQRESFEAELSIKGVG 131
Query: 221 NKDKIEERHRHRYEVNKKYVPDYEKHGFLFTGVDEKEVRMEIAELRDHPYYVAVQFHPE 279
+ V + + + + FHPE
Sbjct: 132 DGFVGVFIRAPHIVEAGDGVDVLATYNDRIVAARQGQF-------------LGCSFHPE 177
>d1ui0a_ c.18.1.2 (A:) Thermophilic uracil-DNA glycosylase {Thermus
thermophilus [TaxId: 274]}
Length = 192
Score = 25.2 bits (54), Expect = 9.9
Identities = 17/103 (16%), Positives = 35/103 (33%), Gaps = 4/103 (3%)
Query: 12 SMFCHVTPENVIFNPDVKPIYKVRML-RIDRLNKTVTIGLVGKYTKFEDCYASLTRALEH 70
++ P+N PD I + L + L I +G ++
Sbjct: 79 NIVKCRPPQNRAPLPDEAKICTDKWLLKQIELIAPQIIVPLGAVAAEFFLGEKVSITKVR 138
Query: 71 ASYHSNRHLQLK--YFDSELLSMDPKTGNMAEYHKTWSDFCKV 111
++ +++ + + LL +P + H TW D +V
Sbjct: 139 GKWYEWHGIKVFPMFHPAYLLR-NPSRAPGSPKHLTWLDIQEV 180
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.138 0.421
Gapped
Lambda K H
0.267 0.0615 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,317,275
Number of extensions: 65737
Number of successful extensions: 240
Number of sequences better than 10.0: 1
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 38
Length of query: 326
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 240
Effective length of database: 1,226,816
Effective search space: 294435840
Effective search space used: 294435840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.4 bits)