BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17165
         (151 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1SZJ|G Chain G, Structure Of Holo-Glyceraldehyde-3-Phosphate-Dehydrogenase
           From Palinurus Versicolor Refined 2.0 Angstrom
           Resolution
 pdb|1SZJ|R Chain R, Structure Of Holo-Glyceraldehyde-3-Phosphate-Dehydrogenase
           From Palinurus Versicolor Refined 2.0 Angstrom
           Resolution
 pdb|1CRW|G Chain G, Crystal Structure Of Apo-Glyceraldehyde-3-Phosphate
           Dehydrogenase From Palinurus Versicolor At 2.0a
           Resolution
 pdb|1CRW|R Chain R, Crystal Structure Of Apo-Glyceraldehyde-3-Phosphate
           Dehydrogenase From Palinurus Versicolor At 2.0a
           Resolution
          Length = 333

 Score = 26.6 bits (57), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 5   IQRILLLTEDDAVFTDVRASGNYELFDQEISLSMHRIG---VSLLDNEKG 51
           +Q +L  TEDD V  D        +FD +  + + +     VS  DNE G
Sbjct: 266 LQGVLGYTEDDVVSCDFTGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFG 315


>pdb|1DSS|G Chain G, Structure Of Active-Site Carboxymethylated
           D-Glyceraldehyde-3- Phosphate Dehydrogenase From
           Palinurus Versicolor
 pdb|1DSS|R Chain R, Structure Of Active-Site Carboxymethylated
           D-Glyceraldehyde-3- Phosphate Dehydrogenase From
           Palinurus Versicolor
          Length = 333

 Score = 26.6 bits (57), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 5   IQRILLLTEDDAVFTDVRASGNYELFDQEISLSMHRIG---VSLLDNEKG 51
           +Q +L  TEDD V  D        +FD +  + + +     VS  DNE G
Sbjct: 266 LQGVLGYTEDDVVSCDFTGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFG 315


>pdb|2VYN|D Chain D, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
 pdb|2VYV|D Chain D, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
          Length = 334

 Score = 26.6 bits (57), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 8   ILLLTEDDAVFTDVRASGNYELFDQE--ISLSMHRIG-VSLLDNEKG 51
           IL  TED  V TD     +  +FD +  I+L+ + +  VS  DNE G
Sbjct: 271 ILAYTEDQVVSTDFNGDSHSSIFDAKAGIALNDNFVKLVSWYDNEYG 317


>pdb|1IHX|A Chain A, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
           Dehydrogenase Complexes: A Case Of Asymmetry
 pdb|1IHX|B Chain B, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
           Dehydrogenase Complexes: A Case Of Asymmetry
 pdb|1IHX|C Chain C, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
           Dehydrogenase Complexes: A Case Of Asymmetry
 pdb|1IHX|D Chain D, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
           Dehydrogenase Complexes: A Case Of Asymmetry
 pdb|1IHY|A Chain A, Gapdh Complexed With Adp-Ribose
 pdb|1IHY|B Chain B, Gapdh Complexed With Adp-Ribose
 pdb|1IHY|C Chain C, Gapdh Complexed With Adp-Ribose
 pdb|1IHY|D Chain D, Gapdh Complexed With Adp-Ribose
          Length = 333

 Score = 26.6 bits (57), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 5   IQRILLLTEDDAVFTDVRASGNYELFDQEISLSMHRIG---VSLLDNEKG 51
           +Q +L  TEDD V  D        +FD +  + + +     VS  DNE G
Sbjct: 266 LQGVLGYTEDDVVSCDFTGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFG 315


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.138    0.379 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,941,960
Number of Sequences: 62578
Number of extensions: 139041
Number of successful extensions: 326
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 326
Number of HSP's gapped (non-prelim): 12
length of query: 151
length of database: 14,973,337
effective HSP length: 90
effective length of query: 61
effective length of database: 9,341,317
effective search space: 569820337
effective search space used: 569820337
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)