BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17165
(151 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8BX70|VP13C_MOUSE Vacuolar protein sorting-associated protein 13C OS=Mus musculus
GN=Vps13c PE=1 SV=2
Length = 3748
Score = 109 bits (272), Expect = 7e-24, Method: Composition-based stats.
Identities = 50/89 (56%), Positives = 66/89 (74%), Gaps = 1/89 (1%)
Query: 64 VGGAAGAASRITGAMGKGIAALTFDKEYQRRRRLQTARQAT-LHEDLAASGKGLVLGFVQ 122
VGGAAG SRITG++GKG+AA+T DKEYQ++RR + RQ + LA GKG + G V
Sbjct: 3466 VGGAAGVVSRITGSVGKGLAAITMDKEYQQKRREEMGRQPKDFGDSLARGGKGFLRGVVG 3525
Query: 123 GVSGVVTKPIEGAKDDGVEGFVKGVGKAM 151
GV+G++TKP+EGAK +G GF KG+GK +
Sbjct: 3526 GVTGIITKPVEGAKKEGAAGFFKGIGKGL 3554
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 4 GIQRILLLTEDDAVFTDVRASGNYELFDQEISLSMHRIGVSLLDNEKGNELLYMSITRIG 63
G QR+LL T+D A+ + + E D E++LS+H +G+SL++NE E+ Y+ IT G
Sbjct: 3052 GRQRVLLFTDDVALVSKALQAEEMEQADHEVALSLHSLGLSLVNNENKQEVSYVGITSSG 3111
Query: 64 V 64
V
Sbjct: 3112 V 3112
>sp|Q709C8|VP13C_HUMAN Vacuolar protein sorting-associated protein 13C OS=Homo sapiens
GN=VPS13C PE=1 SV=1
Length = 3753
Score = 109 bits (272), Expect = 7e-24, Method: Composition-based stats.
Identities = 50/89 (56%), Positives = 67/89 (75%), Gaps = 1/89 (1%)
Query: 64 VGGAAGAASRITGAMGKGIAALTFDKEYQRRRRLQTARQA-TLHEDLAASGKGLVLGFVQ 122
VGGAAG SRITG++GKG+AA+T DKEYQ++RR + +RQ + LA GKG + G V
Sbjct: 3471 VGGAAGVVSRITGSVGKGLAAITMDKEYQQKRREELSRQPRDFGDSLARGGKGFLRGVVG 3530
Query: 123 GVSGVVTKPIEGAKDDGVEGFVKGVGKAM 151
GV+G++TKP+EGAK +G GF KG+GK +
Sbjct: 3531 GVTGIITKPVEGAKKEGAAGFFKGIGKGL 3559
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 26/61 (42%), Positives = 39/61 (63%)
Query: 4 GIQRILLLTEDDAVFTDVRASGNYELFDQEISLSMHRIGVSLLDNEKGNELLYMSITRIG 63
G QR+LL T+D A+ + + E D EI+LS+H +G+SL++NE E+ Y+ IT G
Sbjct: 3057 GRQRVLLFTDDVALVSKALQAEEMEQADYEITLSLHSLGLSLVNNESKQEVSYIGITSSG 3116
Query: 64 V 64
V
Sbjct: 3117 V 3117
>sp|Q5H8C4|VP13A_MOUSE Vacuolar protein sorting-associated protein 13A OS=Mus musculus
GN=Vps13a PE=1 SV=1
Length = 3166
Score = 95.5 bits (236), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/81 (54%), Positives = 60/81 (74%), Gaps = 1/81 (1%)
Query: 72 SRITGAMGKGIAALTFDKEYQRRRRLQTARQ-ATLHEDLAASGKGLVLGFVQGVSGVVTK 130
S+IT AM KG+AA+T D++YQ++RR +Q A L E + GKGLV GFV G++G+VTK
Sbjct: 2914 SKITSAMAKGVAAMTMDEDYQQKRREAMNKQPAGLREGITRGGKGLVSGFVSGITGIVTK 2973
Query: 131 PIEGAKDDGVEGFVKGVGKAM 151
PI+GA+ +G GF KGVGK +
Sbjct: 2974 PIKGAQKEGAAGFFKGVGKGL 2994
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 4 GIQRILLLTEDDAVFTDVRASGNYELFDQEISLSMHRIGVSLLDNEKGNELLYMSIT 60
G+QRI+L TED VF S EL + E+ L++ +G+SL++N E+ Y+ IT
Sbjct: 2487 GLQRIILFTEDPRVFKVTYESEKAELAELEVVLALQDVGISLVNNYTKQEVAYIGIT 2543
>sp|Q96RL7|VP13A_HUMAN Vacuolar protein sorting-associated protein 13A OS=Homo sapiens
GN=VPS13A PE=1 SV=2
Length = 3174
Score = 95.1 bits (235), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/81 (54%), Positives = 59/81 (72%), Gaps = 1/81 (1%)
Query: 72 SRITGAMGKGIAALTFDKEYQRRRRLQTARQ-ATLHEDLAASGKGLVLGFVQGVSGVVTK 130
S+ITGAM KG+AA+T D++YQ++RR +Q A E + GKGLV GFV G++G+VTK
Sbjct: 2922 SKITGAMAKGVAAMTMDEDYQQKRREAMNKQPAGFREGITRGGKGLVSGFVSGITGIVTK 2981
Query: 131 PIEGAKDDGVEGFVKGVGKAM 151
PI+GA+ G GF KGVGK +
Sbjct: 2982 PIKGAQKGGAAGFFKGVGKGL 3002
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 4 GIQRILLLTEDDAVFTDVRASGNYELFDQEISLSMHRIGVSLLDNEKGNELLYMSIT 60
G+QRI+L TED VF S EL +QEI++++ +G+SL++N E+ Y+ IT
Sbjct: 2494 GLQRIILFTEDPRVFKVTYESEKAELAEQEIAVALQDVGISLVNNYTKQEVAYIGIT 2550
>sp|Q9BGZ0|VP13A_MACFA Vacuolar protein sorting-associated protein 13A (Fragment)
OS=Macaca fascicularis GN=VPS13A PE=2 SV=1
Length = 619
Score = 89.4 bits (220), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 60/81 (74%), Gaps = 1/81 (1%)
Query: 72 SRITGAMGKGIAALTFDKEYQRRRRLQTARQ-ATLHEDLAASGKGLVLGFVQGVSGVVTK 130
S+ITGAM KG+AA+T D++YQ++RR +Q A E + GKGLV GFV G++G+VTK
Sbjct: 448 SKITGAMAKGVAAMTMDEDYQQKRREAMNKQPAGFREGITRGGKGLVSGFVSGITGIVTK 507
Query: 131 PIEGAKDDGVEGFVKGVGKAM 151
PI+GA+ +G GF KGVGK +
Sbjct: 508 PIKGAQKEGAAGFFKGVGKGL 528
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 4 GIQRILLLTEDDAVFTDVRASGNYELFDQEISLSMHRIGVSLLDNEKGNELLYMSIT 60
G+QRI+L TED VF S EL +QEI++++ +G+SL++N E+ Y+ IT
Sbjct: 20 GLQRIILFTEDPKVFKVTYESEKAELAEQEIAVALQDVGISLVNNYTKQEVAYIGIT 76
>sp|Q54LB8|VP13A_DICDI Putative vacuolar protein sorting-associated protein 13A
OS=Dictyostelium discoideum GN=vps13A PE=2 SV=1
Length = 3373
Score = 73.6 bits (179), Expect = 4e-13, Method: Composition-based stats.
Identities = 40/95 (42%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 58 SITRIGVGGAAGAASRITGAMGKGIAALTFDKEYQRRRRLQTARQAT-LHEDLAASGKGL 116
S + V G S++TG +G G+A L+FD++Y + R+L AR+ + + E LA G GL
Sbjct: 3094 SFVKNSVFGTFNTLSKLTGTLGTGVATLSFDEKYLQERKLHQARKPSHVGEGLAMGGIGL 3153
Query: 117 VLGFVQGVSGVVTKPIEGAKDDGVEGFVKGVGKAM 151
G +QG++G+VTKP+EGAK G GF KG+ + +
Sbjct: 3154 GRGILQGITGIVTKPVEGAKKGGFAGFAKGLAQGV 3188
>sp|Q54LN2|VP13D_DICDI Putative vacuolar protein sorting-associated protein 13D
OS=Dictyostelium discoideum GN=vps13D PE=3 SV=1
Length = 4592
Score = 70.1 bits (170), Expect = 4e-12, Method: Composition-based stats.
Identities = 37/94 (39%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Query: 57 MSITRIGVGGAAGAASRITGAMGKGIAALTFDKEYQRRRRLQTARQAT-LHEDLAASGKG 115
+S+ + V G S+++ +GKG+A L+FD +Y R R+ ++A L E + K
Sbjct: 4325 ISLVKNSVYGLFNTLSKLSNTVGKGVAILSFDDQYLRNRQRSRQKKAKHLGEGVVYGFKS 4384
Query: 116 LVLGFVQGVSGVVTKPIEGAKDDGVEGFVKGVGK 149
L G + GV+GVVTKPIEGA +EGF KG+ +
Sbjct: 4385 LGKGVIDGVTGVVTKPIEGAIKGSIEGFAKGMAQ 4418
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 8/65 (12%)
Query: 4 GIQRILLLT----EDDAVFTDVRASGNYELFDQEISLSMHRIGVSLLDNEKGNELLYMSI 59
G R+L+L+ +DD+ + N +L ++ LS+ RIGVSL+D+ EL+Y+S+
Sbjct: 3942 GPTRVLVLSYDQPKDDSSSELSQTVENCKL---DLQLSLPRIGVSLIDH-NSKELIYLSL 3997
Query: 60 TRIGV 64
I +
Sbjct: 3998 NDISL 4002
>sp|Q07878|VPS13_YEAST Vacuolar protein sorting-associated protein 13 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS13 PE=1
SV=1
Length = 3144
Score = 59.7 bits (143), Expect = 6e-09, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 13/134 (9%)
Query: 23 ASGNYELFDQEISLSM-----HRIGVSLLDNEKGNELLYMSITRIGVGGAAGAASRITGA 77
+SG ++LF + M IG+ L KG +S + V G + + S+ TG+
Sbjct: 2852 SSGVWDLFYEPYQGYMMNDRPQEIGIHL---AKGG----LSFAKKTVFGLSDSMSKFTGS 2904
Query: 78 MGKGIAALTFDKEYQRRRRLQTARQATLHEDLAASGKGLVLGFVQGVSGVVTKPIEGAKD 137
M KG++ +T D E+QR RRLQ LA S + G+SG+ P + +
Sbjct: 2905 MAKGLS-VTQDLEFQRVRRLQQRINKNNRNALANSAQSFASTLGSGLSGIALDPYKAMQK 2963
Query: 138 DGVEGFVKGVGKAM 151
+G GF+KG+GK +
Sbjct: 2964 EGAAGFLKGLGKGI 2977
>sp|Q555C6|VP13B_DICDI Putative vacuolar protein sorting-associated protein 13B
OS=Dictyostelium discoideum GN=vps13B PE=3 SV=1
Length = 6061
Score = 59.7 bits (143), Expect = 6e-09, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 66 GAAGAASRITGAMGKGIAALTFDKEYQRRRRLQTARQAT-LHEDLAASGKGLVLGFVQGV 124
AA ++S++ G + G A + D+ Y RRR + +A + KG +G + GV
Sbjct: 5776 AAANSSSKLFGTISSGFATWSLDETYLRRRDAEEKVKAKHIAHGFYLGSKGFAMGIIDGV 5835
Query: 125 SGVVTKPIEGAKDDGVEGFVKGVGKAM 151
G+V P+ GA +G+ GF KG GK +
Sbjct: 5836 FGIVEHPVRGAMQEGLLGFFKGCGKGV 5862
>sp|Q5THJ4|VP13D_HUMAN Vacuolar protein sorting-associated protein 13D OS=Homo sapiens
GN=VPS13D PE=1 SV=1
Length = 4387
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 66 GAAGAASRITGAMGKGIAALTFDKEYQRRRRLQTARQATLHEDLAASGKGLVLGFVQGVS 125
G + +A++ G + G+ T D +Q R AT E L A GL G + G++
Sbjct: 4103 GVSNSAAKFAGTLSDGLGK-TMDNRHQSEREYIRYHAATSGEHLVAGIHGLAHGIIGGLT 4161
Query: 126 GVVTKPIEGAKDD-GVEGFVKGVGKAM 151
V+T +EG K + GV GF+ G+GK +
Sbjct: 4162 SVITSTVEGVKTEGGVSGFISGLGKGL 4188
>sp|Q55FG3|VP13C_DICDI Putative vacuolar protein sorting-associated protein 13C
OS=Dictyostelium discoideum GN=tipC PE=3 SV=1
Length = 3848
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 58 SITRIGVGGAAGAASRITGAMGKGIAALTFDKEYQRRRRLQTARQAT-LHEDLAASGKGL 116
S+ V G A + S+ITG + KG+ L+ D Y + R+ ++ + E L +
Sbjct: 3568 SLINNSVFGFADSTSKITGTISKGLVQLSLDDSYIKERQESNKQKPKGVKEGLEFGFRDF 3627
Query: 117 VLGFVQGVSGVVTKPIEGA-KDDGVEGFVKGVGKAM 151
G ++G++G++ +P +GA ++ EGF KG+GK +
Sbjct: 3628 GEGVIKGITGIIDEPYKGATQEKSWEGFFKGIGKGV 3663
>sp|Q55EI3|VP13E_DICDI Putative vacuolar protein sorting-associated protein 13E
OS=Dictyostelium discoideum GN=vps13E PE=3 SV=1
Length = 4241
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 58 SITRIGVGGAAGAASRITGAMGKGIAALTFDKEYQRRRRLQTARQA-TLHEDLAASGKGL 116
S+ + V G + +++TG+ GK ++ L+ D+ Y R+ T + L G+
Sbjct: 3517 SLAKHSVYGIFDSGAKLTGSAGKVLSTLSMDQRYILERQYIIGESPNTFMQGLILGGRAA 3576
Query: 117 VLGFVQGVSGVVTKPIEGAKDDGVEGFVKGVGKA 150
+G SG V P EG K+ G +G VKG+GK
Sbjct: 3577 KTAVYRGFSGFVKLPYEGGKEAGPKGVVKGIGKG 3610
>sp|P87319|VP13A_SCHPO Vacuolar protein sorting-associated protein 13a
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps13a PE=3 SV=2
Length = 3011
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 58 SITRIGVGGAAGAASRITGAMGKGIAALTFDKEYQRRRRLQTARQATLH--EDLAASGKG 115
S + V G + S++TG + + ++ +T D ++Q RRR R +H + A
Sbjct: 2805 SFIKKAVFGITDSISKVTGTISRSLSVITLDPKFQSRRRAARIRNRPVHILYGVTAGAAS 2864
Query: 116 LVLGFVQGVSGVVTKPIEGAKDDGVEGFVKGVGKAM 151
L G GV G+ +PI GA+ +G+ G VKG+GK +
Sbjct: 2865 LYTGVRSGVRGLALQPIIGARRNGLPGLVKGLGKGL 2900
>sp|Q54KX3|VP13F_DICDI Putative vacuolar protein sorting-associated protein 13F
OS=Dictyostelium discoideum GN=vps13F PE=3 SV=1
Length = 4246
Score = 49.3 bits (116), Expect = 8e-06, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 58 SITRIGVGGAAGAASRITGAMGKGIAALTFDKEYQRRRRLQTARQATLHEDLAASGKG-L 116
S+ + G +AS++T +G IA + D+ Y +R T + + D ++G G
Sbjct: 3970 SLVSNSIYGIFNSASKLTNTVGSAIAPFSMDENYLAQRDRHTQPKHAI--DGVSNGIGRF 4027
Query: 117 VLGFVQGVSGVVTKPIEGAKDDGVEGFVKGVGKAM 151
G G+SG+ +P++ +D G G VKG GK +
Sbjct: 4028 TQGLAHGLSGLFDQPVKEFQDQGFSGLVKGFGKGI 4062
>sp|O42926|VP13B_SCHPO Vacuolar protein sorting-associated protein 13b
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps13b PE=2 SV=1
Length = 3131
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 25/107 (23%)
Query: 58 SITRIGVGGAAGAASRITGAMGKGIAALTFDKEYQRRRRLQ-------------TARQAT 104
S R + G + + S+ITG + KG++ +T D +YQ RR TA +
Sbjct: 2741 SFMRKTIYGVSDSVSKITGTISKGLSTMTMDPKYQNSRRRFRSRNRPKEAVYGVTAGANS 2800
Query: 105 LHEDLAASGKGLVLGFVQGVSGVVTKPIEGAKDDGVEGFVKGVGKAM 151
++ +++ KGL KP K++ F+KG GK M
Sbjct: 2801 FYDSMSSGFKGL------------KKPFTDPKNNSAGKFLKGFGKGM 2835
>sp|Q54PG5|GACC_DICDI Rho GTPase-activating protein gacC OS=Dictyostelium discoideum
GN=gacC PE=3 SV=1
Length = 399
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 118 LGFVQGVSGVVTKPIEGAKDDGVEGFVKGVGK 149
+G V G G+V +P GAK++G+ GFVKGV K
Sbjct: 97 VGVVNGAKGIVEQPYLGAKNNGLGGFVKGVAK 128
>sp|P19089|G3P_CRYPA Glyceraldehyde-3-phosphate dehydrogenase OS=Cryphonectria
parasitica PE=3 SV=1
Length = 337
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 8 ILLLTEDDAVFTDVRASGNYELFDQE--ISLSMHRIG-VSLLDNEKG 51
+L TEDD V TD+ + N +FD + ISL+ H + VS DNE G
Sbjct: 272 VLAYTEDDVVSTDMNGNPNSSIFDAKAGISLNDHFVKLVSWYDNEWG 318
>sp|Q86K84|VP13L_DICDI Vacuolar protein sorting-associated protein 13-like protein
OS=Dictyostelium discoideum GN=vps13l PE=3 SV=1
Length = 653
Score = 36.2 bits (82), Expect = 0.068, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 101 RQAT-LHEDLAASGKGLVLGFVQGVSGVVTKPIEGAKDD---GVEGFVKGVGKAM 151
R+A+ + E +A L GV+G+VT+PI+G ++D +GF KGVGK +
Sbjct: 534 REASHIFEGIAQGTISLSKNLYLGVTGIVTEPIKGLREDENNKAKGFFKGVGKGL 588
Score = 30.8 bits (68), Expect = 3.0, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
Query: 123 GVSGVVTKPIEGA---KDDGVEGFVKGVGKAM 151
G+SG+V +PI +D+ V+GF KGVGK +
Sbjct: 454 GLSGIVAEPIINIVDNQDNKVKGFFKGVGKGL 485
>sp|P35143|G3P_COLGL Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum
gloeosporioides GN=GPDA PE=2 SV=1
Length = 338
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 8 ILLLTEDDAVFTDVRASGNYELFDQE--ISLSMHRIG-VSLLDNEKG 51
+L TEDD V TD+ + N +FD + ISL+ + + VS DNE G
Sbjct: 273 VLAYTEDDVVSTDMIGNPNSSIFDAKAGISLNNNFVKLVSWYDNEWG 319
>sp|Q96US8|G3P_SCLSC Glyceraldehyde-3-phosphate dehydrogenase OS=Sclerotinia
sclerotiorum GN=GPD PE=3 SV=1
Length = 338
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 8 ILLLTEDDAVFTDVRASGNYELFDQEISLSMHRIGVSLL---DNEKG 51
IL TEDD V TD+ + +FD + +S+++ V L+ DNE G
Sbjct: 273 ILAYTEDDVVSTDMNGDNHSSIFDAKAGISLNKNFVKLVSWYDNEWG 319
>sp|Q00584|G3P_CLAPU Glyceraldehyde-3-phosphate dehydrogenase OS=Claviceps purpurea
GN=GPD-1 PE=3 SV=1
Length = 337
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 8 ILLLTEDDAVFTDVRASGNYELFDQEISLSMHRIGVSLL---DNEKG 51
IL TEDD V +D+ + N +FD + +S+++ V L+ DNE G
Sbjct: 272 ILGYTEDDIVSSDMNGNTNSSIFDAKAGISLNKNFVKLIAWYDNEWG 318
>sp|P17329|G3P2_CAEEL Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caenorhabditis
elegans GN=gpd-2 PE=3 SV=2
Length = 341
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 8 ILLLTEDDAVFTDVRASGNYELFD--QEISLSMHRIG-VSLLDNEKG 51
IL TED V TD + N +FD ISL+ H + VS DNE G
Sbjct: 279 ILAYTEDQVVSTDFVSDTNSSIFDAGASISLNPHFVKLVSWYDNEFG 325
>sp|P17330|G3P3_CAEEL Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caenorhabditis
elegans GN=gpd-3 PE=3 SV=1
Length = 341
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 8 ILLLTEDDAVFTDVRASGNYELFD--QEISLSMHRIG-VSLLDNEKG 51
IL TED V TD + N +FD ISL+ H + VS DNE G
Sbjct: 279 ILAYTEDQVVSTDFVSDTNSSIFDAGASISLNPHFVKLVSWYDNEFG 325
>sp|Q87V73|SAHH_PSESM Adenosylhomocysteinase OS=Pseudomonas syringae pv. tomato (strain
DC3000) GN=ahcY PE=3 SV=1
Length = 469
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 7/123 (5%)
Query: 12 TEDDAVFTDVRASGNYELFDQEISLSMHRIGVSLLDNEKGNELLYMSITR-IGVGGAAGA 70
E D F +R + +E ++ +HR G D + + L+ ++ R + +G A G
Sbjct: 326 NEIDTAF--MRKNWAWEEVKPQVH-KIHRTGAGAFDAQNDDYLILLAEGRLVNLGNATGH 382
Query: 71 ASRIT-GAMGKGIAA--LTFDKEYQRRRRLQTARQATLHEDLAASGKGLVLGFVQGVSGV 127
SRI G+ + A FD++Y + A + T+ + + L V+G GV
Sbjct: 383 PSRIMDGSFANQVLAQIFLFDQKYADLAPAKKAERLTVEVLPKKLDEEVALEMVRGFGGV 442
Query: 128 VTK 130
VTK
Sbjct: 443 VTK 445
>sp|Q3YRX3|SYI_EHRCJ Isoleucine--tRNA ligase OS=Ehrlichia canis (strain Jake) GN=ileS PE=3
SV=1
Length = 1120
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 30 FDQEISLSMHRIGVSLLDNEKGNELLYMSITR 61
F I+L H +GV LLDNE NEL+ I R
Sbjct: 1003 FACTINLDQHLLGVVLLDNELSNELIMEGIAR 1034
>sp|P54117|G3P_COLLN Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum
lindemuthianum GN=GPDA PE=3 SV=1
Length = 337
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 8 ILLLTEDDAVFTDVRASGNYELFDQE--ISLSMHRIG-VSLLDNEKG 51
+L TEDD V TD+ + N +FD + ISL+ + + VS DNE G
Sbjct: 272 VLAYTEDDFVSTDMIGNPNSSIFDAKAGISLNNNFVKLVSWYDNEWG 318
>sp|Q9HGY7|G3P_ASPOR Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus oryzae
(strain ATCC 42149 / RIB 40) GN=gpdA PE=2 SV=1
Length = 338
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 8 ILLLTEDDAVFTDVRASGNYELFDQE--ISLSMHRIG-VSLLDNEKG 51
IL TEDD V TD+ + +FD + I+L+ H I VS DNE G
Sbjct: 274 ILGYTEDDIVSTDLIGDAHSSIFDAKAGIALNEHFIKLVSWYDNEWG 320
>sp|Q7Z7G8|VP13B_HUMAN Vacuolar protein sorting-associated protein 13B OS=Homo sapiens
GN=VPS13B PE=1 SV=2
Length = 4022
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 72 SRITGAMGKGIAALTFDKEYQRRRRLQTARQATLHEDLAASGKGLVLGFVQGVSGVVTKP 131
SR+ ++ IA + D+ Q ++ A+ + H+ KG++ G +G+ GV TKP
Sbjct: 3756 SRLGISLLGAIAGIV-DQPMQNFQKTSEAQASAGHK-----AKGVISGVGKGIMGVFTKP 3809
Query: 132 IEGAKD 137
I GA +
Sbjct: 3810 IGGAAE 3815
>sp|P28844|G3P_COCLU Glyceraldehyde-3-phosphate dehydrogenase OS=Cochliobolus lunatus
GN=GPD PE=3 SV=1
Length = 337
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 8 ILLLTEDDAVFTDVRASGNYELFDQEISLSMHRIGVSLL---DNEKG 51
IL TEDD V TD+ +FD + +S+++ V L+ DNE G
Sbjct: 272 ILGYTEDDIVTTDLNGDNRSSIFDAKAGISLNKNFVKLVSWYDNEWG 318
>sp|P29497|G3P_COCHE Glyceraldehyde-3-phosphate dehydrogenase OS=Cochliobolus
heterostrophus GN=GPD1 PE=3 SV=1
Length = 337
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 8 ILLLTEDDAVFTDVRASGNYELFDQEISLSMHRIGVSLL---DNEKG 51
IL TEDD V TD+ +FD + +S+++ V L+ DNE G
Sbjct: 272 ILGYTEDDIVSTDLNGDNRSSIFDAKAGISLNKNFVKLVSWYDNEWG 318
>sp|P17729|G3P1_TRIKO Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Trichoderma koningii
GN=gpd1 PE=1 SV=3
Length = 336
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 8 ILLLTEDDAVFTDVRASGNYELFDQEISLSMHRIGV---SLLDNEKG 51
IL TEDD V TD+ + FD + +++++ V S DNE G
Sbjct: 271 ILAYTEDDIVSTDILTDPHSSTFDAKAGIALNKNFVKVMSWYDNEYG 317
>sp|Q80TY5|VP13B_MOUSE Vacuolar protein sorting-associated protein 13B OS=Mus musculus
GN=Vps13b PE=1 SV=2
Length = 4013
Score = 30.0 bits (66), Expect = 6.0, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 66 GAAGAASRITGAMGKGIAALTFDKE-YQRRRRLQTARQATLHEDLAASGKGLVLGFVQGV 124
GA + + + ++ + + L+ D+E Y R+ + +L E L L + + +
Sbjct: 3699 GALTSITNLATSLARNMGRLSLDEEHYNRQEEWRRQLPESLGEGLRQGLSRLGISLLGAI 3758
Query: 125 SGVVTKPI---------EGAKDDGVEGFVKGVGKAM 151
+G+V +P+ + + +G + GVGK +
Sbjct: 3759 AGIVDQPMQNFQKTSETQASAGHKAKGVISGVGKGI 3794
>sp|P32637|G3P_PODAS Glyceraldehyde-3-phosphate dehydrogenase OS=Podospora anserina
GN=GPD PE=3 SV=1
Length = 337
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 8 ILLLTEDDAVFTDVRASGNYELFDQE--ISLSMHRIG-VSLLDNEKG 51
IL TED+ V +D+ + N +FD + ISL+ + + VS DNE G
Sbjct: 272 ILGYTEDEIVSSDLNGNANSSIFDAKAGISLNDNFVKLVSWYDNEWG 318
>sp|A7H9F3|IF2_ANADF Translation initiation factor IF-2 OS=Anaeromyxobacter sp. (strain
Fw109-5) GN=infB PE=3 SV=1
Length = 970
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 38/69 (55%), Gaps = 11/69 (15%)
Query: 90 EYQRRRRLQTARQATLHEDL---AASGKGLVLGF-----VQGVSGVVTKPIEGA--KDDG 139
E QR++ L +R+ATL EDL A SG G VL VQG S VT+ ++ A K G
Sbjct: 739 EKQRKKELGASRKATL-EDLFAKAKSGGGKVLNVVVKADVQGSSEAVTQALQKAATKKVG 797
Query: 140 VEGFVKGVG 148
V+ GVG
Sbjct: 798 VKILDSGVG 806
>sp|B5EZH8|ARNA_SALA4 Bifunctional polymyxin resistance protein ArnA OS=Salmonella agona
(strain SL483) GN=arnA PE=3 SV=1
Length = 660
Score = 29.6 bits (65), Expect = 7.7, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 57 MSITRIGVGGAAGAASRITGAMGKGIAALTFDKEYQRRRRLQTARQATLHEDLAASGKGL 116
+S++ + V A GA ITG G GIA + Q + L A L+ A SGK
Sbjct: 260 ISVSPLRVACADGALEIITGQAGDGIAV----QGSQLAQTLGLVAGARLNRPPATSGKRR 315
Query: 117 VLGFVQGVSGVV 128
+ + GV+G +
Sbjct: 316 IRVLILGVNGFI 327
>sp|Q01982|G3P_PHACH Glyceraldehyde-3-phosphate dehydrogenase OS=Phanerochaete
chrysosporium GN=GPD PE=3 SV=1
Length = 337
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 8 ILLLTEDDAVFTDVRASGNYELFDQEISLSMHRIGVSLL---DNEKG 51
IL TE+ V TD + N +FD++ +++++ V L+ DNE G
Sbjct: 272 ILGYTEEKVVSTDFTGNDNSSIFDRDAGIALNKTFVKLISWYDNEWG 318
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.137 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,664,095
Number of Sequences: 539616
Number of extensions: 2104511
Number of successful extensions: 6572
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 6491
Number of HSP's gapped (non-prelim): 94
length of query: 151
length of database: 191,569,459
effective HSP length: 107
effective length of query: 44
effective length of database: 133,830,547
effective search space: 5888544068
effective search space used: 5888544068
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)