Query psy17165
Match_columns 151
No_of_seqs 144 out of 491
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 23:34:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17165.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17165hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1809|consensus 99.8 1.5E-21 3.3E-26 192.3 3.6 144 3-151 1568-1741(1827)
2 COG5043 MRS6 Vacuolar protein 99.8 1.8E-19 3.8E-24 173.2 1.6 142 10-151 2215-2387(2552)
3 PF09333 ATG_C: ATG C terminal 99.1 1.5E-11 3.2E-16 87.9 0.5 55 97-151 5-59 (98)
4 PF09333 ATG_C: ATG C terminal 89.5 0.28 6.2E-06 34.7 2.2 63 60-137 10-72 (98)
5 KOG2993|consensus 65.6 4.1 8.9E-05 41.8 2.1 53 99-151 1641-1693(1738)
6 PF11632 LcnG-beta: Lactococci 35.4 13 0.00028 21.4 0.1 9 141-149 17-25 (35)
7 COG5043 MRS6 Vacuolar protein 19.6 29 0.00062 36.7 -0.7 60 61-135 2339-2398(2552)
8 PRK04081 hypothetical protein; 17.1 1.9E+02 0.0042 23.4 3.6 16 87-102 146-161 (207)
9 KOG0759|consensus 16.8 1.4E+02 0.003 25.4 2.8 22 126-147 235-256 (286)
10 PF02444 HEV_ORF1: Hepatitis E 16.0 58 0.0013 23.5 0.3 25 108-132 32-56 (114)
No 1
>KOG1809|consensus
Probab=99.83 E-value=1.5e-21 Score=192.30 Aligned_cols=144 Identities=41% Similarity=0.642 Sum_probs=127.9
Q ss_pred CCceEEEeccccHHHHHHHHhhcccchhhhhhhhhhceeecccccc------------------------------cccc
Q psy17165 3 TGIQRILLLTEDDAVFTDVRASGNYELFDQEISLSMHRIGVSLLDN------------------------------EKGN 52 (151)
Q Consensus 3 ~~~qrv~lFt~~~~l~~~~~~~~~~el~~q~~~~si~giG~S~v~n------------------------------~~g~ 52 (151)
++.-+=++|.+...++..+..||.-+.+.|-|++.. +.+..+| ..+.
T Consensus 1568 ~~~~~~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~---~~~~~~~p~~l~~~~s~~~~d~f~~p~~g~~~~~~~~~~~~ 1644 (1827)
T KOG1809|consen 1568 NSFLLENAFSTLDELISEVASHYSQQFLKQIYKLVG---SLDVLGNPVGLFRDLSSGVEDLFYEPFQGAVQGPEEFVEGF 1644 (1827)
T ss_pred hhHHHhhccccHHHHHHHHHHHHHHHHHHHHHhhhc---cccccCCceeeeecccccchhhccCcccchhcchHHHhhhh
Confidence 344455789999999999999999999999998742 1221111 2245
Q ss_pred hhhhhhhhhccchhhhchHHHHHhhHhhhhhhhccchHHHHHHHHHhhccccHHHHHHHhhhhhhhhhhccccccccccc
Q psy17165 53 ELLYMSITRIGVGGAAGAASRITGAMGKGIAALTFDKEYQRRRRLQTARQATLHEDLAASGKGLVLGFVQGVSGVVTKPI 132 (151)
Q Consensus 53 ~~g~~sl~~~tv~G~~~s~skitgs~~kgl~~lt~D~~y~~~r~~~~~~~~~~~~Gl~~g~~~~~~g~~~GvtGiv~~P~ 132 (151)
..|+.++.+|+|+|++++++|+||++++|++++|||++|+++||.++++|+|+.+|+..|++.|+.|++.|++|+. +|+
T Consensus 1645 ~~g~~~~~~~~v~~~~~~~s~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~g~~g~~-~p~ 1723 (1827)
T KOG1809|consen 1645 ALGTSSFFGKTVGGIAGAVSKITGTMGKGLAALTMDEKYQQKRRAENKKPKGFVEGLARGGKGLAMGFVSGVTGIA-KPI 1723 (1827)
T ss_pred hhhhhhhccceeeeeecchhheeecccccchhhccchhHHHHHHHHhcCCCchhhhhhhccchHhhhhhhcceecc-ccc
Confidence 7889999999999999999999999999999999999999999988999999999999999999999999999999 999
Q ss_pred cchhhcCcccccccccccC
Q psy17165 133 EGAKDDGVEGFVKGVGKAM 151 (151)
Q Consensus 133 ~Gak~~G~~Gf~kGvgkGl 151 (151)
+|||++ +.||+||+|||+
T Consensus 1724 ~~~~~~-~~g~~~g~gkg~ 1741 (1827)
T KOG1809|consen 1724 EGAKKE-AAGFVKGLGKGL 1741 (1827)
T ss_pred cchhcc-cchhheeeccee
Confidence 999999 999999999996
No 2
>COG5043 MRS6 Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]
Probab=99.75 E-value=1.8e-19 Score=173.21 Aligned_cols=142 Identities=27% Similarity=0.342 Sum_probs=123.7
Q ss_pred eccccHHHHHHHHhhcccchhhhhhhhh--hceee------------cc-----------ccccc----ccchhhhhhhh
Q psy17165 10 LLTEDDAVFTDVRASGNYELFDQEISLS--MHRIG------------VS-----------LLDNE----KGNELLYMSIT 60 (151)
Q Consensus 10 lFt~~~~l~~~~~~~~~~el~~q~~~~s--i~giG------------~S-----------~v~n~----~g~~~g~~sl~ 60 (151)
..++-+.+++.+..||.-|...|.+++. .--+| ++ .++|. .+.++|+.|+.
T Consensus 2215 a~~sl~~l~d~i~shY~qq~~~qi~Ki~g~aD~lGNpvglfetvssGv~DlFyEP~~g~~l~~~~~~~g~~iAkG~~SFi 2294 (2552)
T COG5043 2215 ARVSLPELFDLIASHYLQQVEYQIYKILGSADFLGNPVGLFETVSSGVSDLFYEPYQGRFLVDNSQEWGIGIAKGGNSFI 2294 (2552)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHhhcchhhcCCcceeeeccccchhhccccccceeeeccCcceeceeeccchhHHH
Confidence 4567789999999999999999988772 11122 11 11111 36789999999
Q ss_pred hccchhhhchHHHHHhhHhhhhhhhccchHHHHHHH--HHhhccccHHHHHHHhhhhhhhhhhccccccccccccchhhc
Q psy17165 61 RIGVGGAAGAASRITGAMGKGIAALTFDKEYQRRRR--LQTARQATLHEDLAASGKGLVLGFVQGVSGVVTKPIEGAKDD 138 (151)
Q Consensus 61 ~~tv~G~~~s~skitgs~~kgl~~lt~D~~y~~~r~--~~~~~~~~~~~Gl~~g~~~~~~g~~~GvtGiv~~P~~Gak~~ 138 (151)
+++++|+.++++|+|+++++|++..|+|.+||..|| +++++|++..-|+..|+..|+.++.+|+.||-.+|+.||+++
T Consensus 2295 kkti~GvsdsvsK~tgsi~kgLslvt~D~~~q~srr~~~~~nrpk~~~y~v~~Ga~s~~~s~ssG~kGlal~Pi~~~~~~ 2374 (2552)
T COG5043 2295 KKTIYGVSDSVSKFTGSISKGLSLVTSDPELQSSRRLVRRRNRPKGSVYGVTAGATSLYDSTSSGEKGLALEPIIGAATN 2374 (2552)
T ss_pred HHhhccccchhHhhhccccccceeeccCHHHhhhhhhhhhccCCccceEEEeeccchHHhhhhccccccccCceechhhc
Confidence 999999999999999999999999999999999988 667899999999999999999999999999999999999999
Q ss_pred CcccccccccccC
Q psy17165 139 GVEGFVKGVGKAM 151 (151)
Q Consensus 139 G~~Gf~kGvgkGl 151 (151)
|+.||+||+|||+
T Consensus 2375 g~~gfvKGlGKGi 2387 (2552)
T COG5043 2375 GASGFVKGLGKGI 2387 (2552)
T ss_pred cchheeecccccc
Confidence 9999999999996
No 3
>PF09333 ATG_C: ATG C terminal domain; InterPro: IPR015412 Eukaryotes have developed an evolutionarily conserved process, termed autophagy, to survive starvation conditions. The vacuole or lysosome mediates the turnover and recycling of non-essential intracellular material for re-use in critical biosynthetic reactions. ATG2 (also known as Apg2) is required for the formation and/or completion of cytosolic sequestering vesicles that are needed for vacuolar import through both the Cvt pathway and autophagy, as well as for the specific degradation of peroxisomes. Apg2 is a peripheral membrane protein that localises to the previously identified perivacuolar compartment that contains Apg9 []. This entry represents the C-terminal domain of Apg2 and related proteins.
Probab=99.10 E-value=1.5e-11 Score=87.85 Aligned_cols=55 Identities=47% Similarity=0.779 Sum_probs=53.1
Q ss_pred HHhhccccHHHHHHHhhhhhhhhhhccccccccccccchhhcCcccccccccccC
Q psy17165 97 LQTARQATLHEDLAASGKGLVLGFVQGVSGVVTKPIEGAKDDGVEGFVKGVGKAM 151 (151)
Q Consensus 97 ~~~~~~~~~~~Gl~~g~~~~~~g~~~GvtGiv~~P~~Gak~~G~~Gf~kGvgkGl 151 (151)
.+.++|+++.+||.+|.++|..||.+|+++|+..|+++++++|+.||++|++||+
T Consensus 5 ~~~~qP~~~~eGl~~a~~~l~~g~~~~~~~i~~~p~~~~~~~g~~g~~~gv~kgv 59 (98)
T PF09333_consen 5 LYANQPKDLREGLQQAYQSLGRGLQSGASGIVAKPIEGAQQEGVKGFVKGVGKGV 59 (98)
T ss_pred HhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhccChHHHHHHHHHhc
Confidence 5678999999999999999999999999999999999999999999999999986
No 4
>PF09333 ATG_C: ATG C terminal domain; InterPro: IPR015412 Eukaryotes have developed an evolutionarily conserved process, termed autophagy, to survive starvation conditions. The vacuole or lysosome mediates the turnover and recycling of non-essential intracellular material for re-use in critical biosynthetic reactions. ATG2 (also known as Apg2) is required for the formation and/or completion of cytosolic sequestering vesicles that are needed for vacuolar import through both the Cvt pathway and autophagy, as well as for the specific degradation of peroxisomes. Apg2 is a peripheral membrane protein that localises to the previously identified perivacuolar compartment that contains Apg9 []. This entry represents the C-terminal domain of Apg2 and related proteins.
Probab=89.46 E-value=0.28 Score=34.72 Aligned_cols=63 Identities=24% Similarity=0.309 Sum_probs=39.4
Q ss_pred hhccchhhhchHHHHHhhHhhhhhhhccchHHHHHHHHHhhccccHHHHHHHhhhhhhhhhhccccccccccccchhh
Q psy17165 60 TRIGVGGAAGAASRITGAMGKGIAALTFDKEYQRRRRLQTARQATLHEDLAASGKGLVLGFVQGVSGVVTKPIEGAKD 137 (151)
Q Consensus 60 ~~~tv~G~~~s~skitgs~~kgl~~lt~D~~y~~~r~~~~~~~~~~~~Gl~~g~~~~~~g~~~GvtGiv~~P~~Gak~ 137 (151)
..|...|+..+...+...+..+...+.. .+.+ ..+ ..|..+|..+++.|+.++|.+|+-||-+
T Consensus 10 P~~~~eGl~~a~~~l~~g~~~~~~~i~~------~p~~-------~~~--~~g~~g~~~gv~kgvp~~vvkP~iG~~e 72 (98)
T PF09333_consen 10 PKDLREGLQQAYQSLGRGLQSGASGIVA------KPIE-------GAQ--QEGVKGFVKGVGKGVPGAVVKPMIGATE 72 (98)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHH------hHHH-------HHh--ccChHHHHHHHHHhchHHHHhhHHHHHH
Confidence 3444555555555555555555444321 1110 000 2577789999999999999999999874
No 5
>KOG2993|consensus
Probab=65.63 E-value=4.1 Score=41.77 Aligned_cols=53 Identities=21% Similarity=0.210 Sum_probs=47.9
Q ss_pred hhccccHHHHHHHhhhhhhhhhhccccccccccccchhhcCcccccccccccC
Q psy17165 99 TARQATLHEDLAASGKGLVLGFVQGVSGVVTKPIEGAKDDGVEGFVKGVGKAM 151 (151)
Q Consensus 99 ~~~~~~~~~Gl~~g~~~~~~g~~~GvtGiv~~P~~Gak~~G~~Gf~kGvgkGl 151 (151)
..+|+++.+|++.|-..+..|+.+.-.-|+.-|.+.-...|+.|.+-.+++++
T Consensus 1641 a~QP~dlr~Gl~kAYs~l~~Gi~~ta~tL~~aa~~~~~~k~~~gav~~V~R~~ 1693 (1738)
T KOG2993|consen 1641 AMQPTDLREGLAKAYSSLKDGIHDTADTLERAAQEEHDSKGLGGAVGTVVRQA 1693 (1738)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcchHHHHHHhhC
Confidence 45999999999999999999999999999999999999999999988887653
No 6
>PF11632 LcnG-beta: Lactococcin G-beta; InterPro: IPR021089 This entry represents Lactococcin-G subunit beta with subunit alpha constitutes the two-peptide bacteriocin lactococcin G. This family of proteins represents the N-terminal domain which has an alpha-helical structure and is amphiphilic. Both peptides have a GxxxG motif which they use for interaction through a helix-helix structure []. It is thought to kill Lactococci [].; PDB: 2JPK_A 2JPM_A.
Probab=35.42 E-value=13 Score=21.42 Aligned_cols=9 Identities=56% Similarity=0.855 Sum_probs=4.0
Q ss_pred ccccccccc
Q psy17165 141 EGFVKGVGK 149 (151)
Q Consensus 141 ~Gf~kGvgk 149 (151)
+||.||++|
T Consensus 17 ~g~~kg~~k 25 (35)
T PF11632_consen 17 KGFGKGIIK 25 (35)
T ss_dssp HCCTTTTTC
T ss_pred HHHhhhhhh
Confidence 344444443
No 7
>COG5043 MRS6 Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]
Probab=19.58 E-value=29 Score=36.68 Aligned_cols=60 Identities=23% Similarity=0.388 Sum_probs=45.3
Q ss_pred hccchhhhchHHHHHhhHhhhhhhhccchHHHHHHHHHhhccccHHHHHHHhhhhhhhhhhccccccccccccch
Q psy17165 61 RIGVGGAAGAASRITGAMGKGIAALTFDKEYQRRRRLQTARQATLHEDLAASGKGLVLGFVQGVSGVVTKPIEGA 135 (151)
Q Consensus 61 ~~tv~G~~~s~skitgs~~kgl~~lt~D~~y~~~r~~~~~~~~~~~~Gl~~g~~~~~~g~~~GvtGiv~~P~~Ga 135 (151)
+|.++|+..++..+..+++.|+.-|++++=--.+ ..|+..|.+|++.|+-|+.++|.-|.
T Consensus 2339 k~~~y~v~~Ga~s~~~s~ssG~kGlal~Pi~~~~---------------~~g~~gfvKGlGKGilG~~Tkplvg~ 2398 (2552)
T COG5043 2339 KGSVYGVTAGATSLYDSTSSGEKGLALEPIIGAA---------------TNGASGFVKGLGKGILGLETKPLVGF 2398 (2552)
T ss_pred ccceEEEeeccchHHhhhhccccccccCceechh---------------hccchheeeccccccccCcccceeee
Confidence 5678888888888888899898887765421111 13777888999999999999997654
No 8
>PRK04081 hypothetical protein; Provisional
Probab=17.12 E-value=1.9e+02 Score=23.36 Aligned_cols=16 Identities=19% Similarity=0.316 Sum_probs=10.3
Q ss_pred cchHHHHHHHHHhhcc
Q psy17165 87 FDKEYQRRRRLQTARQ 102 (151)
Q Consensus 87 ~D~~y~~~r~~~~~~~ 102 (151)
=++.||++|+...+.|
T Consensus 146 NN~nyq~~~~~~YksP 161 (207)
T PRK04081 146 NNQNYQNQRQRTYKSP 161 (207)
T ss_pred cCHHHHHhhhcccCCh
Confidence 3789999887333333
No 9
>KOG0759|consensus
Probab=16.80 E-value=1.4e+02 Score=25.39 Aligned_cols=22 Identities=32% Similarity=0.629 Sum_probs=15.6
Q ss_pred ccccccccchhhcCcccccccc
Q psy17165 126 GVVTKPIEGAKDDGVEGFVKGV 147 (151)
Q Consensus 126 Giv~~P~~Gak~~G~~Gf~kGv 147 (151)
|.++.=.+=+|++|+.+|+||+
T Consensus 235 g~~d~~~k~~k~eG~~~~~kGf 256 (286)
T KOG0759|consen 235 GLLDVLVKTVKKEGPLGFFKGF 256 (286)
T ss_pred cHHHHHHHHHHHcCcchhhccc
Confidence 4444444556789999999996
No 10
>PF02444 HEV_ORF1: Hepatitis E virus ORF-2 (Putative capsid protein); InterPro: IPR003384 The Hepatitis E virus(HEV) genome is a single-stranded, positive-sense RNA molecule of approximately 7.5 kb []. Three open reading frames (ORF) were identified within the HEV genome: ORF1 encodes nonstructural proteins, ORF2 encodes the putative structural protein(s), and ORF3 encodes a protein of unknown function. ORF2 contains a consensus signal peptide sequence at its amino terminus and a capsid-like region with a high content of basic amino acids similar to that seen with other virus capsid proteins [].; GO: 0030430 host cell cytoplasm
Probab=15.97 E-value=58 Score=23.51 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=20.2
Q ss_pred HHHHhhhhhhhhhhccccccccccc
Q psy17165 108 DLAASGKGLVLGFVQGVSGVVTKPI 132 (151)
Q Consensus 108 Gl~~g~~~~~~g~~~GvtGiv~~P~ 132 (151)
....|+.+-.-.+.+|+||++..|-
T Consensus 32 a~~~gg~aavp~vvsgvtgLiLSPS 56 (114)
T PF02444_consen 32 AAVAGGAAAVPAVVSGVTGLILSPS 56 (114)
T ss_pred HHHhccccccceeeecceeeeeCCC
Confidence 4456777788889999999998874
Done!