Query psy17165
Match_columns 151
No_of_seqs 144 out of 491
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 23:34:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17165.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17165hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jpk_A Bacteriocin lactococcin 33.3 8.3 0.00028 21.4 -0.1 7 142-148 18-24 (35)
2 4b4t_W RPN10, 26S proteasome r 15.6 71 0.0024 25.3 2.1 11 3-13 105-115 (268)
3 3iyk_G VP2; icosahedral virus; 14.4 17 0.00058 32.6 -2.1 33 5-38 408-440 (600)
4 1okc_A ADP, ATP carrier protei 12.8 53 0.0018 25.3 0.5 13 136-148 262-274 (297)
5 2rpq_B Activating transcriptio 11.9 19 0.00066 21.5 -1.7 31 59-90 12-42 (49)
6 2iay_A Hypothetical protein; s 10.1 58 0.002 22.9 -0.1 15 2-16 77-91 (114)
7 2hhc_A NODZ, nodulation fucosy 9.3 1.8E+02 0.0062 22.7 2.6 21 5-25 216-236 (330)
8 4g5o_E G-protein-signaling mod 9.2 51 0.0018 16.8 -0.5 7 4-10 17-23 (26)
9 2lck_A Mitochondrial uncouplin 9.0 65 0.0022 25.0 -0.2 13 136-148 250-262 (303)
10 3lqc_A DNA repair protein XRCC 8.9 68 0.0023 24.5 -0.1 45 3-48 103-149 (189)
No 1
>2jpk_A Bacteriocin lactococcin-G subunit beta; peptide, antimicrobial, membrane bound, antimicrobial protein; NMR {Lactococcus lactis} PDB: 2jpm_A
Probab=33.32 E-value=8.3 Score=21.42 Aligned_cols=7 Identities=57% Similarity=0.748 Sum_probs=3.0
Q ss_pred ccccccc
Q psy17165 142 GFVKGVG 148 (151)
Q Consensus 142 Gf~kGvg 148 (151)
||.||++
T Consensus 18 g~~kg~~ 24 (35)
T 2jpk_A 18 GFGKGAI 24 (35)
T ss_dssp HHTTTCT
T ss_pred HHhhhhh
Confidence 4444443
No 2
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=15.65 E-value=71 Score=25.31 Aligned_cols=11 Identities=27% Similarity=0.238 Sum_probs=9.2
Q ss_pred CCceEEEeccc
Q psy17165 3 TGIQRILLLTE 13 (151)
Q Consensus 3 ~~~qrv~lFt~ 13 (151)
++.+||+||+.
T Consensus 105 ~~~~rIIlf~d 115 (268)
T 4b4t_W 105 VQHQRIVAFVC 115 (268)
T ss_dssp TSEEEEEEEEC
T ss_pred CCceEEEEEEC
Confidence 57899999974
No 3
>3iyk_G VP2; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=14.41 E-value=17 Score=32.56 Aligned_cols=33 Identities=12% Similarity=0.045 Sum_probs=28.9
Q ss_pred ceEEEeccccHHHHHHHHhhcccchhhhhhhhhh
Q psy17165 5 IQRILLLTEDDAVFTDVRASGNYELFDQEISLSM 38 (151)
Q Consensus 5 ~qrv~lFt~~~~l~~~~~~~~~~el~~q~~~~si 38 (151)
+||+.||..+.+..+.|. |+.+|+++.+.+.+.
T Consensus 408 ~~RiNlFDl~~epGd~Ii-hW~~~~~~~~~~tt~ 440 (600)
T 3iyk_G 408 YGRVNLFDFVAEPGIKIV-HWEYRLNHSTREITY 440 (600)
T ss_pred EEEecccccCCCCCCEEE-EEEEEecCcccccch
Confidence 589999999999999998 999999988766654
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=12.84 E-value=53 Score=25.30 Aligned_cols=13 Identities=46% Similarity=0.772 Sum_probs=10.8
Q ss_pred hhcCccccccccc
Q psy17165 136 KDDGVEGFVKGVG 148 (151)
Q Consensus 136 k~~G~~Gf~kGvg 148 (151)
++||+.||++|+.
T Consensus 262 ~~eG~~glyrG~~ 274 (297)
T 1okc_A 262 KDEGPKAFFKGAW 274 (297)
T ss_dssp HHHCGGGGGTTHH
T ss_pred HHcCcCeEecchH
Confidence 6789999999974
No 5
>2rpq_B Activating transcription factor 7-interacting protein 1; SUMO, SIM, nucleus, UBL conjugation, UBL conjugation pathway, activator; NMR {Homo sapiens}
Probab=11.90 E-value=19 Score=21.51 Aligned_cols=31 Identities=23% Similarity=0.463 Sum_probs=21.6
Q ss_pred hhhccchhhhchHHHHHhhHhhhhhhhccchH
Q psy17165 59 ITRIGVGGAAGAASRITGAMGKGIAALTFDKE 90 (151)
Q Consensus 59 l~~~tv~G~~~s~skitgs~~kgl~~lt~D~~ 90 (151)
.-+..+.....+ .|.+++=+.|+--|+||++
T Consensus 12 vnKraaesttqs-~katg~dsgGVIDLTlDdE 42 (49)
T 2rpq_B 12 VSKKAADSTSQC-GKATGSDSSGVIDLTMDDE 42 (49)
T ss_pred cchhhccCcchh-heeecCCCCceEEeeecch
Confidence 334444444444 6788888889999999876
No 6
>2iay_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, translation; HET: MSE; 1.20A {Lactobacillus plantarum} SCOP: d.376.1.1
Probab=10.09 E-value=58 Score=22.92 Aligned_cols=15 Identities=27% Similarity=0.494 Sum_probs=12.7
Q ss_pred CCCceEEEeccccHH
Q psy17165 2 RTGIQRILLLTEDDA 16 (151)
Q Consensus 2 ~~~~qrv~lFt~~~~ 16 (151)
.+|+|+|.+|.+++.
T Consensus 77 ~nGl~~VNIFK~~~~ 91 (114)
T 2iay_A 77 GNGVQRANIFKNDAH 91 (114)
T ss_dssp TTSSSBCCSCGGGCC
T ss_pred CCCCEEEecccCccc
Confidence 479999999998764
No 7
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=9.27 E-value=1.8e+02 Score=22.74 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=18.0
Q ss_pred ceEEEeccccHHHHHHHHhhc
Q psy17165 5 IQRILLLTEDDAVFTDVRASG 25 (151)
Q Consensus 5 ~qrv~lFt~~~~l~~~~~~~~ 25 (151)
..||++||+|+...+.++..+
T Consensus 216 ~~~vfvaSDd~~~~~~lk~~~ 236 (330)
T 2hhc_A 216 PVKVFLCTDSAQVLDQVSGLF 236 (330)
T ss_dssp CEEEEEEESCHHHHHHHHHHS
T ss_pred ceEEEEEeCCHHHHHHHHHHc
Confidence 478999999999999887655
No 8
>4g5o_E G-protein-signaling modulator 2; galphai, goloco, galpha signaling, asymmetric cell division, cycle-signaling protein complex; HET: GDP CIT; 2.90A {Mus musculus} PDB: 4g5q_E* 4g5r_E*
Probab=9.23 E-value=51 Score=16.82 Aligned_cols=7 Identities=57% Similarity=0.757 Sum_probs=5.2
Q ss_pred CceEEEe
Q psy17165 4 GIQRILL 10 (151)
Q Consensus 4 ~~qrv~l 10 (151)
.-|||||
T Consensus 17 deqrvll 23 (26)
T 4g5o_E 17 DEQRVLL 23 (26)
T ss_dssp GGGCBCC
T ss_pred hHHHhhh
Confidence 4588887
No 9
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=9.02 E-value=65 Score=24.95 Aligned_cols=13 Identities=31% Similarity=0.613 Sum_probs=10.8
Q ss_pred hhcCccccccccc
Q psy17165 136 KDDGVEGFVKGVG 148 (151)
Q Consensus 136 k~~G~~Gf~kGvg 148 (151)
+++|+.||++|+.
T Consensus 250 ~~eG~~glyrG~~ 262 (303)
T 2lck_A 250 RKEGPRAFYKGFM 262 (303)
T ss_dssp HSSCTHHHHSCCH
T ss_pred HHcChHHhhccHH
Confidence 5689999999874
No 10
>3lqc_A DNA repair protein XRCC1; allosteric disulfide, scaffolding protein, DNA repair, DNA D nucleus, phosphoprotein, polymorphism, DNA replication; HET: DNA; 2.35A {Homo sapiens} PDB: 3k75_B* 1xna_A 1xnt_A 3k77_A*
Probab=8.89 E-value=68 Score=24.53 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=30.9
Q ss_pred CCceEEEeccccHHHHHHHHhhccc--chhhhhhhhhhceeecccccc
Q psy17165 3 TGIQRILLLTEDDAVFTDVRASGNY--ELFDQEISLSMHRIGVSLLDN 48 (151)
Q Consensus 3 ~~~qrv~lFt~~~~l~~~~~~~~~~--el~~q~~~~si~giG~S~v~n 48 (151)
..++||-+|+.+...-..+...++. =.+.|+|.-.+ -.|+|++..
T Consensus 103 ~N~nrVr~F~~~~l~~~~~~~kWDrvkivCsQPfnk~~-~yGLsFv~~ 149 (189)
T 3lqc_A 103 SNPNRVRMFGPDKLVRAAAEKRWDRVKIVCSQPYSKDS-PFGLSFVRF 149 (189)
T ss_dssp CSTTCEEEECGGGSCHHHHTSCEEEEEEEEECTTCTTS-CCEEEEEEE
T ss_pred CCccceEEechhhcchhhhhhcceeEEEEEeCCCcccc-ccceEEEEE
Confidence 3578999999888777777666633 33778886553 348776643
Done!