Query psy17165
Match_columns 151
No_of_seqs 144 out of 491
Neff 6.2
Searched_HMMs 13730
Date Fri Aug 16 23:34:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17165.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17165hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1okca_ f.42.1.1 (A:) ADP,ATP 16.2 17 0.0013 25.8 0.4 13 136-148 261-273 (292)
2 d1unnc_ d.240.1.1 (C:) DNA pol 11.0 70 0.0051 19.5 2.4 39 5-48 60-101 (111)
3 d2omza1 b.1.18.15 (A:417-495) 8.6 37 0.0027 20.8 0.1 10 124-133 70-79 (79)
4 d1vmaa1 a.24.13.1 (A:1-81) Sig 7.0 1.3E+02 0.0092 17.6 2.2 38 59-96 3-40 (81)
5 d1ybfa_ c.56.2.1 (A:) AMP nucl 6.5 1.2E+02 0.0089 21.3 2.3 29 2-30 18-46 (246)
6 d2iaya1 d.376.1.1 (A:1-113) Hy 6.2 52 0.0038 21.4 -0.1 15 2-16 76-90 (113)
7 d1h6ta1 b.1.18.15 (A:241-321) 6.0 56 0.0041 20.0 -0.0 10 124-133 71-80 (81)
8 d2pbza1 c.30.1.8 (A:4-99) 5-fo 5.8 66 0.0048 20.3 0.3 12 131-142 13-24 (96)
9 d1kska4 d.265.1.3 (A:60-231) R 5.6 1.4E+02 0.01 19.6 2.0 29 8-38 49-77 (172)
10 d1s1ta1 c.55.3.1 (A:430-539) H 5.4 1.6E+02 0.012 18.0 2.1 23 3-25 59-81 (110)
No 1
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]}
Probab=16.19 E-value=17 Score=25.77 Aligned_cols=13 Identities=46% Similarity=0.772 Sum_probs=10.4
Q ss_pred hhcCccccccccc
Q psy17165 136 KDDGVEGFVKGVG 148 (151)
Q Consensus 136 k~~G~~Gf~kGvg 148 (151)
++||+.||+||++
T Consensus 261 ~~eG~~~lyrG~~ 273 (292)
T d1okca_ 261 KDEGPKAFFKGAW 273 (292)
T ss_dssp HHHCGGGGGTTHH
T ss_pred HhcCcCcccccHH
Confidence 4679999999874
No 2
>d1unnc_ d.240.1.1 (C:) DNA polymerase IV {Escherichia coli [TaxId: 562]}
Probab=11.01 E-value=70 Score=19.53 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=22.3
Q ss_pred ceEEEeccccHHHHHHHHhhcccchhhhh---hhhhhceeecccccc
Q psy17165 5 IQRILLLTEDDAVFTDVRASGNYELFDQE---ISLSMHRIGVSLLDN 48 (151)
Q Consensus 5 ~qrv~lFt~~~~l~~~~~~~~~~el~~q~---~~~si~giG~S~v~n 48 (151)
+||.+..+++..|+..+. +++++. -.+.+-|++++..+.
T Consensus 60 r~~~~~~~~~~~i~~~~~-----~ll~~~~~~~piRLlGV~v~~l~~ 101 (111)
T d1unnc_ 60 QEHVWPRLNKADLIATAR-----KTWDERRGGRGVRLVGLHVTLLDP 101 (111)
T ss_dssp EEEECSBCCHHHHHHHHH-----HHHHHHCTTCCEEEEEEEEECCCC
T ss_pred EcccCCCCCHHHHHHHHH-----HHHHhcccCCCEeEEEEEeecCCC
Confidence 467777777777776664 343332 234555777665443
No 3
>d2omza1 b.1.18.15 (A:417-495) Internalin A {Listeria monocytogenes [TaxId: 1639]}
Probab=8.60 E-value=37 Score=20.75 Aligned_cols=10 Identities=50% Similarity=0.929 Sum_probs=6.8
Q ss_pred cccccccccc
Q psy17165 124 VSGVVTKPIE 133 (151)
Q Consensus 124 vtGiv~~P~~ 133 (151)
++|.|+||++
T Consensus 70 FsGtVtQPLk 79 (79)
T d2omza1 70 FSGTVTQPLK 79 (79)
T ss_dssp EEEEEEEEBC
T ss_pred EeEEEEeecC
Confidence 5677777764
No 4
>d1vmaa1 a.24.13.1 (A:1-81) Signal recognition particle receptor, FtsY {Thermotoga maritima [TaxId: 2336]}
Probab=6.98 E-value=1.3e+02 Score=17.60 Aligned_cols=38 Identities=13% Similarity=0.095 Sum_probs=21.9
Q ss_pred hhhccchhhhchHHHHHhhHhhhhhhhccchHHHHHHH
Q psy17165 59 ITRIGVGGAAGAASRITGAMGKGIAALTFDKEYQRRRR 96 (151)
Q Consensus 59 l~~~tv~G~~~s~skitgs~~kgl~~lt~D~~y~~~r~ 96 (151)
+++..-.|...+-.+++..+.+-++.=..|+++.+.=+
T Consensus 3 ~f~klk~gL~KTr~~~~~~l~~lf~~~~iDe~~leeLE 40 (81)
T d1vmaa1 3 LFDFLKKGLQKTKETFFGRVVKLLKGKKLDDETREELE 40 (81)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHTTCCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34444445555555566555554444457888876655
No 5
>d1ybfa_ c.56.2.1 (A:) AMP nucleosidase {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=6.55 E-value=1.2e+02 Score=21.25 Aligned_cols=29 Identities=10% Similarity=0.031 Sum_probs=23.9
Q ss_pred CCCceEEEeccccHHHHHHHHhhcccchh
Q psy17165 2 RTGIQRILLLTEDDAVFTDVRASGNYELF 30 (151)
Q Consensus 2 ~~~~qrv~lFt~~~~l~~~~~~~~~~el~ 30 (151)
.+.-||-+|||+++.=++...+++..|..
T Consensus 18 ~~~~~~~vl~~~~~~~v~~fa~~~~~~~~ 46 (246)
T d1ybfa_ 18 LIDFEPYILLTNFSHYLHVFAEHYGVPIV 46 (246)
T ss_dssp TTTSCSEEEEESCHHHHHHHHHHHTCCCB
T ss_pred HHHccCCEEECCCchHHHHHHHHhCCccc
Confidence 35679999999999999999887766554
No 6
>d2iaya1 d.376.1.1 (A:1-113) Hypothetical protein Lp2179 {Lactobacillus plantarum [TaxId: 1590]}
Probab=6.15 E-value=52 Score=21.42 Aligned_cols=15 Identities=27% Similarity=0.494 Sum_probs=12.2
Q ss_pred CCCceEEEeccccHH
Q psy17165 2 RTGIQRILLLTEDDA 16 (151)
Q Consensus 2 ~~~~qrv~lFt~~~~ 16 (151)
.+|+++|.+|.+++.
T Consensus 76 ~nGL~~VNIFK~~~~ 90 (113)
T d2iaya1 76 GNGVQRANIFKNDAH 90 (113)
T ss_dssp TTSSSBCCSCGGGCC
T ss_pred CCCCEEEeeccCccc
Confidence 479999999988654
No 7
>d1h6ta1 b.1.18.15 (A:241-321) Internalin B {Listeria monocytogenes [TaxId: 1639]}
Probab=5.98 E-value=56 Score=19.95 Aligned_cols=10 Identities=40% Similarity=0.783 Sum_probs=7.0
Q ss_pred cccccccccc
Q psy17165 124 VSGVVTKPIE 133 (151)
Q Consensus 124 vtGiv~~P~~ 133 (151)
++|.|+||++
T Consensus 71 FsGtVtQPL~ 80 (81)
T d1h6ta1 71 FHGRVTQPLK 80 (81)
T ss_dssp EEEEEEEEEE
T ss_pred EeEEEEeecc
Confidence 5677777764
No 8
>d2pbza1 c.30.1.8 (A:4-99) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Thermococcus kodakaraensis [TaxId: 311400]}
Probab=5.83 E-value=66 Score=20.28 Aligned_cols=12 Identities=33% Similarity=0.545 Sum_probs=9.1
Q ss_pred cccchhhcCccc
Q psy17165 131 PIEGAKDDGVEG 142 (151)
Q Consensus 131 P~~Gak~~G~~G 142 (151)
=.+|||++|+.=
T Consensus 13 I~~GAK~EGF~T 24 (96)
T d2pbza1 13 ILLGAKKEGFKT 24 (96)
T ss_dssp HHHHHHHTTCCE
T ss_pred HhccHHHcCCcE
Confidence 457999999853
No 9
>d1kska4 d.265.1.3 (A:60-231) Ribosomal small subunit pseudouridine 516 synthase RsuA {Escherichia coli [TaxId: 562]}
Probab=5.58 E-value=1.4e+02 Score=19.62 Aligned_cols=29 Identities=10% Similarity=0.274 Sum_probs=20.3
Q ss_pred EEeccccHHHHHHHHhhcccchhhhhhhhhh
Q psy17165 8 ILLLTEDDAVFTDVRASGNYELFDQEISLSM 38 (151)
Q Consensus 8 v~lFt~~~~l~~~~~~~~~~el~~q~~~~si 38 (151)
++|||+|..+++.+.... .-++.+|.+.+
T Consensus 49 LlL~tndg~~~~~l~~~~--~~i~k~Y~v~v 77 (172)
T d1kska4 49 LVLMTDDGQWSHRITSPR--HHCEKTYLVTL 77 (172)
T ss_dssp EEEEESCHHHHHHHHCTT--SCCCEEEEEEE
T ss_pred cEEEecccceeeeecccc--ccccEEEEEEE
Confidence 689999999999986332 23556666544
No 10
>d1s1ta1 c.55.3.1 (A:430-539) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=5.39 E-value=1.6e+02 Score=17.98 Aligned_cols=23 Identities=9% Similarity=0.098 Sum_probs=18.4
Q ss_pred CCceEEEeccccHHHHHHHHhhc
Q psy17165 3 TGIQRILLLTEDDAVFTDVRASG 25 (151)
Q Consensus 3 ~~~qrv~lFt~~~~l~~~~~~~~ 25 (151)
++.++|.+|||.+-+++.+....
T Consensus 59 ~~~~~v~I~TDS~yvi~~i~~~~ 81 (110)
T d1s1ta1 59 DSGLEVNIVTDSQYALGIIQAQP 81 (110)
T ss_dssp HSCSEEEEEECCHHHHHHHHHCC
T ss_pred hCCCeEEEEEehHHHHHHHhcCc
Confidence 35678999999999998887543
Done!