RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17165
(151 letters)
>gnl|CDD|227376 COG5043, MRS6, Vacuolar protein sorting-associated protein
[Intracellular trafficking and secretion].
Length = 2552
Score = 64.9 bits (158), Expect = 6e-13
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Query: 56 YMSITRIGVGGAAGAASRITGAMGKGIAALTFDKEYQRRRRLQTARQATLHE--DLAASG 113
S + + G + + S+ TG++ KG++ +T D E Q RRL R + A
Sbjct: 2290 GNSFIKKTIYGVSDSVSKFTGSISKGLSLVTSDPELQSSRRLVRRRNRPKGSVYGVTAGA 2349
Query: 114 KGLVLGFVQGVSGVVTKPIEGAKDDGVEGFVKGVGKAM 151
L G G+ +PI GA +G GFVKG+GK +
Sbjct: 2350 TSLYDSTSSGEKGLALEPIIGAATNGASGFVKGLGKGI 2387
>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional.
Length = 1320
Score = 29.1 bits (65), Expect = 1.0
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Query: 66 GAAGAASRITGAMGKGIAALTFDKEYQRR------RRLQTARQATLHEDLAASGKGLV 117
G GA S+ A+ I+AL ++E +RR + LQ + T E + A+G+ LV
Sbjct: 1148 GVRGAESKFINALAAEISALKVEREKERRYLRDENKSLQAQLRDTA-EAVQAAGELLV 1204
>gnl|CDD|235395 PRK05298, PRK05298, excinuclease ABC subunit B; Provisional.
Length = 652
Score = 27.3 bits (62), Expect = 3.1
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 6/30 (20%)
Query: 71 ASRITGAMGKGIAALTFDKEYQRRRRLQTA 100
A +IT +M K I E +RRR +Q A
Sbjct: 554 ADKITDSMQKAI------DETERRREIQIA 577
>gnl|CDD|223630 COG0556, UvrB, Helicase subunit of the DNA excision repair complex
[DNA replication, recombination, and repair].
Length = 663
Score = 27.6 bits (62), Expect = 3.4
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 6/30 (20%)
Query: 71 ASRITGAMGKGIAALTFDKEYQRRRRLQTA 100
A +IT +M K I E +RRR +Q A
Sbjct: 554 ADKITDSMQKAI------DETERRREIQMA 577
>gnl|CDD|233063 TIGR00631, uvrb, excinuclease ABC, B subunit. All proteins in this
family for wich functions are known are DNA helicases
that function in the nucleotide excision repair and are
endonucleases that make the 3' incision next to DNA
damage. They are part of a pathway requiring UvrA, UvrB,
UvrC, and UvrD homologs. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 655
Score = 27.3 bits (61), Expect = 4.0
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 6/30 (20%)
Query: 71 ASRITGAMGKGIAALTFDKEYQRRRRLQTA 100
A +IT +M K I +E +RRR++Q A
Sbjct: 550 ADKITDSMQKAI------EETERRRKIQMA 573
>gnl|CDD|225080 COG2169, Ada, Adenosine deaminase [Nucleotide transport and
metabolism].
Length = 187
Score = 26.5 bits (59), Expect = 5.3
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 80 KGIAALTFDKEYQRRRRLQTARQ 102
K I +T KEY R RR+ AR+
Sbjct: 119 KAITGMTP-KEYARARRMGRARK 140
>gnl|CDD|192254 pfam09333, ATG_C, ATG C terminal domain. ATG2 (also known as Apg2)
is a peripheral membrane protein. It functions in both
cytoplasm to vacuole targeting and autophagy.
Length = 98
Score = 25.6 bits (57), Expect = 5.4
Identities = 14/58 (24%), Positives = 22/58 (37%)
Query: 93 RRRRLQTARQATLHEDLAASGKGLVLGFVQGVSGVVTKPIEGAKDDGVEGFVKGVGKA 150
+ L + L E L + L G + ++ P E + G +G V V KA
Sbjct: 1 KSISLYANQPEDLREGLKKAYSSLGRGLLIAADALIAAPSEVHESKGAQGAVGAVLKA 58
>gnl|CDD|236400 PRK09188, PRK09188, serine/threonine protein kinase; Provisional.
Length = 365
Score = 26.7 bits (59), Expect = 6.1
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 80 KGIAALTFDKEYQRRRRLQTARQATLHEDLAASGKG-LVLGFVQGVSGVVTKP 131
K +A +E R L+T R + L A+GK LV G+ +GV + +P
Sbjct: 61 KPLARHLAARE---IRALKTVRGIGVVPQLLATGKDGLVRGWTEGVPLHLARP 110
>gnl|CDD|224170 COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid
metabolism].
Length = 307
Score = 26.4 bits (59), Expect = 6.3
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 8/30 (26%)
Query: 57 MSITRIGVGGAAGAASRITGAMGKGIAALT 86
M I ++ V GA G MG GIAA+
Sbjct: 1 MEIKKVAVIGA--------GVMGAGIAAVF 22
>gnl|CDD|163469 TIGR03757, conj_TIGR03757, integrating conjugative element protein,
PFL_4709 family. Members of this protein belong to
extended genomic regions that appear to be spread by
conjugative transfer [Mobile and extrachromosomal
element functions, Plasmid functions].
Length = 113
Score = 25.7 bits (57), Expect = 6.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 92 QRRRRLQTARQATLHEDLAASGKGLVLGFVQGV 124
Q R+RLQ+ A L LA + +G+ + GV
Sbjct: 50 QARQRLQSPDWARLQRRLAQAYQGVADAWQLGV 82
>gnl|CDD|180746 PRK06916, PRK06916, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 460
Score = 26.2 bits (58), Expect = 7.1
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 14/62 (22%)
Query: 88 DKEYQRRRRLQTARQ--ATLHEDLAASGKGLVLGFVQGVSGVVTKPIEGAKDDGVEGFVK 145
DK ++ L+ + HE++AA +V VQG G++T P +G++K
Sbjct: 201 DKAEIVKKHLEELEELLKEKHEEIAAI---IVEPLVQGAGGMITMP---------KGYLK 248
Query: 146 GV 147
G+
Sbjct: 249 GL 250
>gnl|CDD|222701 pfam14349, SprA_N, Motility related/secretion protein. This domain
is found repeated three times in the N-terminal half of
the gliding motility-related SprA proteins. The role of
this domain in motility is uncertain. It is also found
in proteins required for secretion.
Length = 413
Score = 26.3 bits (58), Expect = 7.7
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 1 MRTGIQRI-LLLTEDDAVFTDVRASGNYELFDQEIS------LSMHRIGVSLLDNEKGNE 53
++ G Q + L++++ + V + G ++ + E+ L M R+G DN
Sbjct: 207 LQFGEQSLTLVVSQLPSDSRAVSSKGGFKNTNFELDARQYKELRMFRLGTDFRDNYYEAL 266
Query: 54 LLYMSITRIGV 64
+ ITR+ V
Sbjct: 267 PTGVDITRVEV 277
>gnl|CDD|236211 PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogenase; Validated.
Length = 507
Score = 26.0 bits (58), Expect = 9.4
Identities = 11/27 (40%), Positives = 12/27 (44%), Gaps = 8/27 (29%)
Query: 57 MSITRIGVGGAAGAASRITGAMGKGIA 83
SI + V G GAMG GIA
Sbjct: 5 PSIATVAVIG--------AGAMGAGIA 23
>gnl|CDD|219756 pfam08237, PE-PPE, PE-PPE domain. This domain is found C terminal
to the PE (pfam00934) and PPE (pfam00823) domains. The
secondary structure of this domain is predicted to be a
mixture of alpha helices and beta strands.
Length = 227
Score = 25.8 bits (57), Expect = 9.5
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Query: 81 GIAALTFDK-EYQRRRRLQTARQATLHEDLAASGKGLVLGFVQGVSGVVT 129
G+ +LTFD+ + L A + LAA +V G+ QG + V
Sbjct: 18 GLGSLTFDESVAEGVDNLNAA----IRSQLAAGEPVVVFGYSQG-ALVAA 62
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.137 0.374
Gapped
Lambda K H
0.267 0.0805 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,899,745
Number of extensions: 747285
Number of successful extensions: 776
Number of sequences better than 10.0: 1
Number of HSP's gapped: 775
Number of HSP's successfully gapped: 40
Length of query: 151
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 63
Effective length of database: 7,034,450
Effective search space: 443170350
Effective search space used: 443170350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.4 bits)