RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17165
(151 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.001
Identities = 22/110 (20%), Positives = 36/110 (32%), Gaps = 17/110 (15%)
Query: 7 RILLLTEDDAVFTDVRASGNYELFDQEISLSMHRIGVSLLDNEKGNELLYMSITRIGVGG 66
+ILL T V TD ++ ISL H + L ++ LL +
Sbjct: 267 KILLTTRFKQV-TDFLSAATT----THISLDHHSMT---LTPDEVKSLL-LKYLDCRPQD 317
Query: 67 AAGAASRITGAMGKGIAAL------TFDK-EYQRRRRLQTARQATLHEDL 109
IA T+D ++ +L T +++L L
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL-NVL 366
>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics,
PSI, protein structure initiative, NYSG oxidoreductase;
2.20A {Escherichia coli}
Length = 483
Score = 30.0 bits (68), Expect = 0.31
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 8/27 (29%)
Query: 57 MSITRIGVGGAAGAASRITGAMGKGIA 83
+++ + V G+ G MG GIA
Sbjct: 3 LNVQTVAVIGS--------GTMGAGIA 21
>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty
acid biosynthesis II, short-chain dehydrogenase
reductase superfamily; HET: NAI; 1.80A {Yersinia pestis}
PDB: 3zu4_A* 3zu5_A* 3zu2_A*
Length = 405
Score = 29.7 bits (66), Expect = 0.36
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 62 IGVGGAAGAASRITGAMGKGIA--ALTFDKEYQRRRRLQTARQATLHEDLAASGKGLVLG 119
IG G A+RIT A G G + F++ + + + + A+ KGL
Sbjct: 53 IGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAK 112
Query: 120 FVQG 123
+ G
Sbjct: 113 SING 116
>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding,
fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}
Length = 422
Score = 28.6 bits (63), Expect = 0.78
Identities = 17/63 (26%), Positives = 22/63 (34%), Gaps = 2/63 (3%)
Query: 62 IGVGGAAGAASRITGAMGKG--IAALTFDKEYQRRRRLQTARQATLHEDLAASGKGLVLG 119
IG G ASRIT A G G + F+K + + D A GL
Sbjct: 67 IGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSK 126
Query: 120 FVQ 122
+
Sbjct: 127 SIN 129
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary
complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo
sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A*
1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A*
3had_A* 2hdh_A* 3hdh_A*
Length = 302
Score = 28.3 bits (64), Expect = 0.85
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 8/27 (29%)
Query: 57 MSITRIGVGGAAGAASRITGAMGKGIA 83
+ + + V G G MG GIA
Sbjct: 13 IIVKHVTVIGG--------GLMGAGIA 31
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase,
hypertherm protein, replication; HET: DNA BOG; 1.50A
{Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB:
1d2m_A*
Length = 664
Score = 27.5 bits (62), Expect = 1.9
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 6/30 (20%)
Query: 71 ASRITGAMGKGIAALTFDKEYQRRRRLQTA 100
A R++ AM + I E RRR LQ A
Sbjct: 547 ADRVSEAMQRAIE------ETNRRRALQEA 570
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex,
hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus
subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A*
1d9x_A 2d7d_B* 2nmv_B*
Length = 661
Score = 27.1 bits (61), Expect = 2.5
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 6/30 (20%)
Query: 71 ASRITGAMGKGIAALTFDKEYQRRRRLQTA 100
A +IT +M I E +RRR Q
Sbjct: 553 ADKITKSMEIAIN------ETKRRREQQER 576
>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics,
joint center for structural genomics, J protein
structure initiative, PSI; HET: PE8; 2.00A
{Archaeoglobus fulgidus}
Length = 293
Score = 26.4 bits (59), Expect = 4.5
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 8/27 (29%)
Query: 57 MSITRIGVGGAAGAASRITGAMGKGIA 83
++ V GA G MG+GIA
Sbjct: 10 HHHMKVFVIGA--------GLMGRGIA 28
>2iaf_A Hypothetical protein SDHL; MCSG, PSI2, MAD, structural genomics,
L-serine dehydratase, structure initiative; 2.05A
{Legionella pneumophila} SCOP: d.81.2.1 PDB: 2iqq_A
Length = 151
Score = 25.8 bits (57), Expect = 5.2
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 76 GAMGKGIAALTFDKEYQRRRRLQTAR--QATLHEDLAASGKG 115
G M +AA F + +++ + + L+ LA +GKG
Sbjct: 12 GPM---LAANAFLQLLEQKNLFDKTQRVKVELYGSLALTGKG 50
>3mn2_A Probable ARAC family transcriptional regulator; structural
genomics, PSI-2, protein structure initiative; 1.80A
{Rhodopseudomonas palustris}
Length = 108
Score = 25.2 bits (56), Expect = 5.2
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 90 EYQRRRRLQTARQATLHEDLAAS 112
+ +R RLQ A +
Sbjct: 49 AFAKRVRLQHAHNLLSDGATPTT 71
>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH,
oxidoreductase; 1.80A {Staphylococcus aureus}
Length = 243
Score = 25.3 bits (56), Expect = 9.1
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 8/36 (22%)
Query: 57 MSITRIGVGGAAGAASRITGAMGKGIAALTFDKEYQ 92
M+ +I + G GAM + +A L +K ++
Sbjct: 1 MASMKILLIGY--------GAMNQRVARLAEEKGHE 28
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting;
1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A
1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A
1u0o_C
Length = 202
Score = 25.0 bits (55), Expect = 9.7
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 122 QGVSGVVTKPIEGAKDDGVEGFVKGVGKA 150
Q +S + ++G K V G+G
Sbjct: 129 QRMSRNFVRYVQGLKKKKVIVIPVGIGPH 157
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.137 0.374
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,331,635
Number of extensions: 142504
Number of successful extensions: 334
Number of sequences better than 10.0: 1
Number of HSP's gapped: 332
Number of HSP's successfully gapped: 36
Length of query: 151
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 66
Effective length of database: 4,328,508
Effective search space: 285681528
Effective search space used: 285681528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.1 bits)