RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17165
         (151 letters)



>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA
          dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
          Length = 192

 Score = 28.7 bits (63), Expect = 0.20
 Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 8/29 (27%)

Query: 57 MSITRIGVGGAAGAASRITGAMGKGIAAL 85
          + +  + V G         G MG GIA +
Sbjct: 2  IIVKHVTVIGG--------GLMGAGIAQV 22


>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha
          subunit, middle domain {Pseudomonas fragi [TaxId: 296]}
          Length = 186

 Score = 26.0 bits (56), Expect = 1.6
 Identities = 9/27 (33%), Positives = 11/27 (40%), Gaps = 8/27 (29%)

Query: 59 ITRIGVGGAAGAASRITGAMGKGIAAL 85
          + +  V GA        G MG GIA  
Sbjct: 4  VKQAAVLGA--------GIMGGGIAYQ 22


>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B
           subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 271

 Score = 25.5 bits (55), Expect = 3.1
 Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 5/73 (6%)

Query: 52  NELLYMSITRIGVGGAAGAASRITGAMGKGIAALTFDKEYQRRRRLQTARQATLHEDLAA 111
           +  L     +I V GA+GA   +        AA   D +  R R  Q      ++  +AA
Sbjct: 170 DVNLAWPTAQIAVMGASGAVGFVYRQQLAEAAANGEDIDKLRLRLQQEYEDTLVNPYVAA 229

Query: 112 SGKGLVLGFVQGV 124
                  G+V  V
Sbjct: 230 E-----RGYVDAV 237


>d1vk3a3 d.139.1.1 (A:167-345) Phosphoribosylformylglycinamidine
          synthase II, domains 2 and 4 {Thermotoga maritima
          [TaxId: 2336]}
          Length = 179

 Score = 25.2 bits (54), Expect = 3.3
 Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 49 EKGNELLYMSIT--RIGVGGAAGAASRITGAMGKGIAALTFDKEYQRR 94
            G  ++       R G+ GA+ A+  +TG     ++    D   ++ 
Sbjct: 4  RPGQVIVIFGGATGRDGIHGASFASEDLTGDKATKLSIQVGDPFAEKM 51


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.137    0.374 

Gapped
Lambda     K      H
   0.267   0.0508    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 519,802
Number of extensions: 22195
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 6
Length of query: 151
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 73
Effective length of database: 1,336,656
Effective search space: 97575888
Effective search space used: 97575888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.2 bits)