Query psy17172
Match_columns 80
No_of_seqs 135 out of 687
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 23:43:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17172.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17172hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3689|consensus 100.0 1.4E-32 3E-37 215.8 7.4 80 1-80 403-495 (707)
2 PF00233 PDEase_I: 3'5'-cyclic 99.9 2.5E-24 5.4E-29 151.3 5.9 53 28-80 1-66 (237)
3 KOG3688|consensus 99.9 3.4E-24 7.3E-29 162.2 3.8 80 1-80 190-283 (554)
4 KOG1229|consensus 99.8 4.9E-21 1.1E-25 146.5 4.1 79 2-80 477-568 (775)
5 cd00077 HDc Metal dependent ph 97.1 0.00055 1.2E-08 41.2 3.2 39 28-66 1-48 (145)
6 smart00471 HDc Metal dependent 96.7 0.0029 6.3E-08 37.4 3.7 41 27-67 2-49 (124)
7 PRK10119 putative hydrolase; P 94.8 0.051 1.1E-06 38.7 4.0 46 15-60 11-62 (231)
8 PF01966 HD: HD domain; Inter 94.5 0.051 1.1E-06 32.5 3.1 35 31-65 2-44 (122)
9 COG1078 HD superfamily phospho 93.9 0.067 1.5E-06 41.0 3.4 28 42-69 79-106 (421)
10 TIGR01353 dGTP_triPase deoxygu 93.3 0.07 1.5E-06 40.3 2.5 37 28-64 36-90 (381)
11 TIGR03401 cyanamide_fam HD dom 91.9 0.34 7.5E-06 34.2 4.4 56 2-60 31-96 (228)
12 KOG2681|consensus 91.3 0.19 4.1E-06 39.3 2.7 29 40-68 101-129 (498)
13 PRK01286 deoxyguanosinetriphos 89.5 0.19 4.2E-06 37.6 1.4 36 31-67 64-106 (336)
14 PF07514 TraI_2: Putative heli 89.0 0.4 8.7E-06 35.6 2.8 22 40-61 98-119 (327)
15 COG0232 Dgt dGTP triphosphohyd 88.5 0.24 5.1E-06 38.2 1.3 13 49-61 99-111 (412)
16 PRK01096 deoxyguanosinetriphos 88.0 0.34 7.4E-06 37.4 1.9 15 48-62 101-115 (440)
17 PRK04926 dgt deoxyguanosinetri 86.5 0.46 1E-05 37.4 1.9 14 48-61 109-122 (503)
18 TIGR03276 Phn-HD phosphonate d 86.5 0.41 8.9E-06 33.0 1.4 35 25-61 21-58 (179)
19 TIGR03760 ICE_TraI_Pfluor inte 85.4 1.5 3.3E-05 30.8 3.9 15 47-61 106-120 (218)
20 TIGR00277 HDIG uncharacterized 85.3 1.5 3.3E-05 24.3 3.3 19 48-66 29-47 (80)
21 PRK05318 deoxyguanosinetriphos 84.9 0.63 1.4E-05 35.8 1.9 16 49-64 95-110 (432)
22 COG2206 c-di-GMP phosphodieste 84.0 1.3 2.9E-05 32.7 3.2 43 28-70 147-198 (344)
23 PRK03007 deoxyguanosinetriphos 83.7 0.75 1.6E-05 35.5 1.9 36 28-63 68-110 (428)
24 PRK10885 cca multifunctional t 82.9 0.96 2.1E-05 34.4 2.2 38 25-62 219-261 (409)
25 TIGR00295 conserved hypothetic 81.2 1.5 3.3E-05 29.1 2.4 43 18-62 4-57 (164)
26 COG1418 Predicted HD superfami 79.1 1.1 2.4E-05 31.4 1.3 37 29-65 36-78 (222)
27 TIGR00488 putative HD superfam 76.4 1.3 2.9E-05 29.0 1.0 34 30-64 9-49 (158)
28 PRK00227 glnD PII uridylyl-tra 75.0 4.3 9.3E-05 33.2 3.7 37 25-61 373-417 (693)
29 TIGR01693 UTase_glnD [Protein- 74.3 3.2 6.9E-05 34.2 2.9 16 46-61 465-480 (850)
30 PRK05007 PII uridylyl-transfer 72.9 3 6.4E-05 34.8 2.4 38 24-61 453-513 (884)
31 COG4341 Predicted HD phosphohy 71.5 2.7 5.9E-05 29.1 1.6 48 11-60 13-62 (186)
32 PRK00106 hypothetical protein; 70.6 6.3 0.00014 31.4 3.6 50 9-61 332-388 (535)
33 PRK13298 tRNA CCA-pyrophosphor 69.9 7.4 0.00016 30.1 3.8 15 48-62 248-262 (417)
34 TIGR01596 cas3_HD CRISPR-assoc 69.2 6.1 0.00013 25.4 2.9 16 46-61 31-46 (177)
35 PRK05092 PII uridylyl-transfer 69.0 4.3 9.3E-05 33.9 2.5 14 48-61 532-545 (931)
36 PRK03381 PII uridylyl-transfer 65.3 8.6 0.00019 31.6 3.5 37 25-61 413-457 (774)
37 PRK12704 phosphodiesterase; Pr 61.2 14 0.00031 29.1 4.0 47 10-61 318-373 (520)
38 TIGR03319 YmdA_YtgF conserved 59.6 16 0.00035 28.8 4.0 49 10-61 312-367 (514)
39 TIGR02692 tRNA_CCA_actino tRNA 58.9 7.9 0.00017 29.8 2.2 34 29-62 258-295 (466)
40 PRK04374 PII uridylyl-transfer 58.8 14 0.0003 31.0 3.7 14 48-61 488-501 (869)
41 PRK01759 glnD PII uridylyl-tra 55.0 15 0.00033 30.6 3.3 14 47-60 474-487 (854)
42 PF09337 zf-H2C2: His(2)-Cys(2 53.4 7.2 0.00016 20.3 0.8 13 56-68 1-13 (39)
43 KOG3424|consensus 52.0 4.7 0.0001 26.5 -0.0 26 55-80 24-49 (132)
44 PRK07152 nadD putative nicotin 51.0 12 0.00026 27.6 1.9 34 30-66 197-239 (342)
45 PRK11031 guanosine pentaphosph 49.5 38 0.00083 26.3 4.6 45 11-60 309-366 (496)
46 PF13328 HD_4: HD domain; PDB: 46.9 10 0.00022 24.5 1.0 32 25-58 17-49 (153)
47 PRK10872 relA (p)ppGpp synthet 45.0 22 0.00048 29.5 2.8 46 12-59 39-85 (743)
48 PRK00275 glnD PII uridylyl-tra 43.1 24 0.00053 29.6 2.8 14 48-61 499-512 (895)
49 KOG1573|consensus 41.9 32 0.0007 24.0 2.8 33 25-59 92-128 (204)
50 PRK12705 hypothetical protein; 39.3 47 0.001 26.4 3.7 48 9-61 305-361 (508)
51 COG3294 HD supefamily hydrolas 36.1 28 0.00061 25.4 1.9 18 44-61 95-112 (269)
52 PRK11092 bifunctional (p)ppGpp 36.0 34 0.00073 28.2 2.5 33 25-59 42-75 (702)
53 KOG0324|consensus 35.4 41 0.00089 24.0 2.6 33 5-38 84-120 (214)
54 PRK12703 tRNA 2'-O-methylase; 34.8 21 0.00045 26.9 1.1 34 30-63 188-227 (339)
55 PRK10854 exopolyphosphatase; P 33.1 98 0.0021 24.2 4.6 46 9-59 313-373 (513)
56 PF05225 HTH_psq: helix-turn-h 33.1 32 0.00069 18.1 1.4 16 2-17 24-39 (45)
57 PF12917 HD_2: HD containing h 32.2 46 0.00099 23.7 2.4 50 10-59 5-70 (215)
58 COG5385 Uncharacterized protei 32.1 28 0.00061 24.4 1.3 22 40-61 8-29 (214)
59 PRK03059 PII uridylyl-transfer 31.8 29 0.00062 29.0 1.5 15 47-61 478-492 (856)
60 COG1353 Predicted CRISPR-assoc 31.6 37 0.0008 28.3 2.1 26 44-75 3-28 (799)
61 TIGR00691 spoT_relA (p)ppGpp s 30.9 28 0.00061 28.4 1.3 33 25-59 17-50 (683)
62 PTZ00071 40S ribosomal protein 28.6 17 0.00038 24.0 -0.2 24 57-80 27-50 (132)
63 COG0317 SpoT Guanosine polypho 28.5 75 0.0016 26.4 3.3 40 25-66 46-87 (701)
64 PRK01178 rps24e 30S ribosomal 28.0 18 0.00038 22.7 -0.2 24 57-80 22-45 (99)
65 PRK13480 3'-5' exoribonuclease 26.2 41 0.00089 24.9 1.4 17 44-60 181-197 (314)
66 PF02163 Peptidase_M50: Peptid 26.2 21 0.00045 23.6 -0.2 16 46-61 3-18 (192)
67 PF01282 Ribosomal_S24e: Ribos 26.1 21 0.00044 21.5 -0.2 24 57-80 4-27 (84)
68 COG2962 RarD Predicted permeas 25.2 77 0.0017 23.6 2.6 17 39-55 122-138 (293)
69 PF13518 HTH_28: Helix-turn-he 25.0 72 0.0016 16.2 1.9 19 2-20 20-38 (52)
70 PF11212 DUF2999: Protein of u 20.8 72 0.0016 19.2 1.5 18 2-19 37-54 (82)
71 PF05153 DUF706: Family of unk 20.7 1E+02 0.0022 22.5 2.5 46 12-59 45-94 (253)
72 PHA03375 hypothetical protein; 20.3 1.1E+02 0.0025 25.7 2.9 35 14-59 258-292 (844)
No 1
>KOG3689|consensus
Probab=99.97 E-value=1.4e-32 Score=215.82 Aligned_cols=80 Identities=41% Similarity=0.737 Sum_probs=77.5
Q ss_pred CcccccCHHHHHHHHHHHHhhCCCCCCCCChhhhhhhh-------------hhchHHHHHHHHHHHHHhcCCCCCCchHH
Q psy17172 1 MEHFNLDVVRVWKLFSLIEEGYHGTNPYHNSIHATDIK-------------RHLTHLEIMASLLAAVAHDLDHPGVNQPF 67 (80)
Q Consensus 1 ~~~f~i~~~~l~~fl~~i~~~Y~~~~pyHN~~Ha~dv~-------------~~l~~~~~~a~l~aal~HDv~HpG~~N~f 67 (80)
+++|+||.++|.+|+..|+++|+++||||||.||+||+ ..++++|++|+++||+|||+||||+||.|
T Consensus 403 v~~f~I~~~tL~r~lltV~k~Yr~~v~YHNw~HAf~VaQ~m~~lL~t~~L~~~fTdlEiLalliAalcHDlDHrGtNN~f 482 (707)
T KOG3689|consen 403 VKKFKIDVETLCRFLLTVEKNYRSNVPYHNWRHAFDVAQAMFALLKTPKLQNKFTDLEILALLIAALCHDLDHRGTNNSY 482 (707)
T ss_pred ceeeccCHHHHHHHHhhhhhccccCCcchhHHHHHHHHHHHHHHHhchhHHhhcChHHHHHHHHHHHHccCCCCCCCcHH
Confidence 46899999999999999999999899999999999998 58899999999999999999999999999
Q ss_pred HHhhcChhHHhcC
Q psy17172 68 LIATSNHLAALYE 80 (80)
Q Consensus 68 l~~t~~~LA~lYn 80 (80)
++++++|||.+|+
T Consensus 483 ~iks~s~LA~lY~ 495 (707)
T KOG3689|consen 483 LIKSNSPLAQLYN 495 (707)
T ss_pred HHhcCCHHHHHhC
Confidence 9999999999997
No 2
>PF00233 PDEase_I: 3'5'-cyclic nucleotide phosphodiesterase; InterPro: IPR002073 The cyclic nucleotide phosphodiesterases (PDE) comprise a group of enzymes that degrade the phosphodiester bond in the second messenger molecules cAMP and cGMP. They are divided into 11 families. They regulate the localisation, duration and amplitude of cyclic nucleotide signalling within subcellular domains. PDEs are therefore important for signal transduction. PDE enzymes are often targets for pharmacological inhibition due to their unique tissue distribution, structural properties, and functional properties. Inhibitors include: Roflumilast for chronic obstructive pulmonary disease and asthma [], Sildenafil for erectile dysfunction [] and Cilostazol for peripheral arterial occlusive disease [], amongst others. Retinal 3',5'-cGMP phosphodiesterase is located in photoreceptor outer segments: it is light activated, playing a pivotal role in signal transduction. In rod cells, PDE is oligomeric, comprising an alpha-, a beta- and 2 gamma-subunits, while in cones, PDE is a homodimer of alpha chains, which are associated with several smaller subunits. Both rod and cone PDEs catalyse the hydrolysis of cAMP or cGMP to the corresponding nucleoside 5' monophosphates, both enzymes also binding cGMP with high affinity. The cGMP-binding sites are located in the N-terminal half of the protein sequence, while the catalytic core resides in the C-terminal portion. This entry represents the catalytic domain of PDE which is multihelical and can be divided into three subdomains.; GO: 0004114 3',5'-cyclic-nucleotide phosphodiesterase activity, 0007165 signal transduction; PDB: 3I8V_A 3TVX_A 2QYK_A 1ZKL_A 3G3N_A 4DFF_B 2OUS_B 3SNL_A 2OUY_A 2OUP_B ....
Probab=99.90 E-value=2.5e-24 Score=151.34 Aligned_cols=53 Identities=55% Similarity=0.867 Sum_probs=49.5
Q ss_pred CCChhhhhhhh-------------hhchHHHHHHHHHHHHHhcCCCCCCchHHHHhhcChhHHhcC
Q psy17172 28 YHNSIHATDIK-------------RHLTHLEIMASLLAAVAHDLDHPGVNQPFLIATSNHLAALYE 80 (80)
Q Consensus 28 yHN~~Ha~dv~-------------~~l~~~~~~a~l~aal~HDv~HpG~~N~fl~~t~~~LA~lYn 80 (80)
|||+.||+||+ ..|+++|++|+++||+|||+||||+||.|++++++|||++||
T Consensus 1 yHN~~Ha~dV~q~~~~ll~~~~~~~~l~~~e~~alliAal~HDv~HpG~~N~flv~~~~~LA~~Y~ 66 (237)
T PF00233_consen 1 YHNFRHAADVLQFVYYLLSNGGLREYLSPLEIFALLIAALCHDVDHPGVNNAFLVKTNSPLAILYN 66 (237)
T ss_dssp SSSHHHHHHHHHHHHHHHHHGGGGTTS-HHHHHHHHHHHHHTTTT-SSSCHHHHHHTTSHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHccCccccCCHHHHHHHHHHHHHhcCCCCccccchhhccccchhhhcC
Confidence 89999999999 578999999999999999999999999999999999999997
No 3
>KOG3688|consensus
Probab=99.89 E-value=3.4e-24 Score=162.21 Aligned_cols=80 Identities=39% Similarity=0.610 Sum_probs=76.9
Q ss_pred CcccccCHHHHHHHHHHHHhhCCC-CCCCCChhhhhhhh-------------hhchHHHHHHHHHHHHHhcCCCCCCchH
Q psy17172 1 MEHFNLDVVRVWKLFSLIEEGYHG-TNPYHNSIHATDIK-------------RHLTHLEIMASLLAAVAHDLDHPGVNQP 66 (80)
Q Consensus 1 ~~~f~i~~~~l~~fl~~i~~~Y~~-~~pyHN~~Ha~dv~-------------~~l~~~~~~a~l~aal~HDv~HpG~~N~ 66 (80)
|.+|+||..-+..|+..++.+|.+ .|||||..||+||+ ..|+.+|++|+++||++||++|||+||+
T Consensus 190 I~rfkip~~~l~~f~~ale~gy~k~knPyhn~~haadVtqt~H~~l~~Tgim~~Lt~LEllA~~faAaiHDYeHtGtTNn 269 (554)
T KOG3688|consen 190 IHRFKIPHGCLELFAHALEVGYSKYKNPYHNLIHAADVTQTVHYHLLHTGIMNWLTELELLALLFAAAIHDYEHTGTTNN 269 (554)
T ss_pred hhhhcccHHHHHHHHHHHHhcccCCCCCccchhhhhhcccCchHHhhhhhHHHHHHHHHHHHHHHHHHHhcccCCCcccc
Confidence 468999999999999999999976 89999999999998 6899999999999999999999999999
Q ss_pred HHHhhcChhHHhcC
Q psy17172 67 FLIATSNHLAALYE 80 (80)
Q Consensus 67 fl~~t~~~LA~lYn 80 (80)
|+|+++|.-|++||
T Consensus 270 FhiQt~s~~AiLYN 283 (554)
T KOG3688|consen 270 FHIQTRSDKAILYN 283 (554)
T ss_pred eEEEecCceeEEec
Confidence 99999999999998
No 4
>KOG1229|consensus
Probab=99.82 E-value=4.9e-21 Score=146.47 Aligned_cols=79 Identities=41% Similarity=0.659 Sum_probs=74.7
Q ss_pred cccccCHHHHHHHHHHHHhhCCCCCCCCChhhhhhhh-------------hhchHHHHHHHHHHHHHhcCCCCCCchHHH
Q psy17172 2 EHFNLDVVRVWKLFSLIEEGYHGTNPYHNSIHATDIK-------------RHLTHLEIMASLLAAVAHDLDHPGVNQPFL 68 (80)
Q Consensus 2 ~~f~i~~~~l~~fl~~i~~~Y~~~~pyHN~~Ha~dv~-------------~~l~~~~~~a~l~aal~HDv~HpG~~N~fl 68 (80)
+.++++.+.|.+|+..||..|+..|.|||.+||+||+ -.++.++..|.++||.+||++|||++|+|+
T Consensus 477 dfL~CSd~~L~aWf~~IEA~YHa~NaYHNaTHAADVLhATaFFL~kerV~g~ldeld~VAALiAAaVHDlDHPGR~NafL 556 (775)
T KOG1229|consen 477 DFLGCSDDLLHAWFLSIEAHYHAGNAYHNATHAADVLHATAFFLDKERVAGHLDELDAVAALIAAAVHDLDHPGRGNAFL 556 (775)
T ss_pred ccccCcHHHHHHHHHHHhhhhcccccccccchHHHHHHHHHHhcCCchhhcccchHHHHHHHHHHHHhccCCCCCCceeE
Confidence 4578999999999999999999999999999999998 367888999999999999999999999999
Q ss_pred HhhcChhHHhcC
Q psy17172 69 IATSNHLAALYE 80 (80)
Q Consensus 69 ~~t~~~LA~lYn 80 (80)
+++.++||++||
T Consensus 557 cNagqeLAiLYN 568 (775)
T KOG1229|consen 557 CNAGQELAILYN 568 (775)
T ss_pred ecCCcceeEEec
Confidence 999999999998
No 5
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=97.14 E-value=0.00055 Score=41.23 Aligned_cols=39 Identities=28% Similarity=0.417 Sum_probs=29.7
Q ss_pred CCChhhhhhhhh-------hc--hHHHHHHHHHHHHHhcCCCCCCchH
Q psy17172 28 YHNSIHATDIKR-------HL--THLEIMASLLAAVAHDLDHPGVNQP 66 (80)
Q Consensus 28 yHN~~Ha~dv~~-------~l--~~~~~~a~l~aal~HDv~HpG~~N~ 66 (80)
++++.|+..|+. .+ ++.+...+.+||++||+|+++..+.
T Consensus 1 ~~~~~Hs~~v~~~~~~~~~~~~~~~~~~~~l~~aaLlHDig~~~~~~~ 48 (145)
T cd00077 1 EHRFEHSLRVAQLARRLAEELGLSEEDIELLRLAALLHDIGKPGTPDA 48 (145)
T ss_pred CchHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhcCCccCccc
Confidence 367888888872 11 2566778999999999999987664
No 6
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=96.68 E-value=0.0029 Score=37.44 Aligned_cols=41 Identities=37% Similarity=0.560 Sum_probs=30.4
Q ss_pred CCCChhhhhhhhhh-------chHHHHHHHHHHHHHhcCCCCCCchHH
Q psy17172 27 PYHNSIHATDIKRH-------LTHLEIMASLLAAVAHDLDHPGVNQPF 67 (80)
Q Consensus 27 pyHN~~Ha~dv~~~-------l~~~~~~a~l~aal~HDv~HpG~~N~f 67 (80)
+++.+.|+..|+.. +...+...+.+||++||+|.+......
T Consensus 2 ~~~~~~H~~~v~~~~~~l~~~~~~~~~~~~~~a~LlHDig~~~~~~~~ 49 (124)
T smart00471 2 DYHVFEHSLRVAQLAAALAEELGLLDIELLLLAALLHDIGKPGTPDSF 49 (124)
T ss_pred CchHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHcccCccCCHHH
Confidence 56788899988822 222245578999999999999887655
No 7
>PRK10119 putative hydrolase; Provisional
Probab=94.78 E-value=0.051 Score=38.66 Aligned_cols=46 Identities=15% Similarity=0.247 Sum_probs=32.8
Q ss_pred HHHHHhhCCCCCCCCChhhhhhhh---hhc---hHHHHHHHHHHHHHhcCCC
Q psy17172 15 FSLIEEGYHGTNPYHNSIHATDIK---RHL---THLEIMASLLAAVAHDLDH 60 (80)
Q Consensus 15 l~~i~~~Y~~~~pyHN~~Ha~dv~---~~l---~~~~~~a~l~aal~HDv~H 60 (80)
-.-+++.+.++-|+|++.|..-|. ..+ ...+...+.+||+.||++.
T Consensus 11 ~~~v~~~l~~~~~~HD~~Hi~RV~~lA~~Ia~~e~~D~~vv~lAAlLHDv~d 62 (231)
T PRK10119 11 ENWLKNHHQHQDAAHDICHFRRVWATAQKLAADDDVDMLVVLTACYFHDIVS 62 (231)
T ss_pred HHHHHHHhhcCCCccChHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhcch
Confidence 334445555468999999999987 222 1236678889999999965
No 8
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=94.52 E-value=0.051 Score=32.45 Aligned_cols=35 Identities=17% Similarity=0.140 Sum_probs=25.5
Q ss_pred hhhhhhhh-------hhch-HHHHHHHHHHHHHhcCCCCCCch
Q psy17172 31 SIHATDIK-------RHLT-HLEIMASLLAAVAHDLDHPGVNQ 65 (80)
Q Consensus 31 ~~Ha~dv~-------~~l~-~~~~~a~l~aal~HDv~HpG~~N 65 (80)
+.|...|+ ..+. +.+...+.+||++||+|......
T Consensus 2 ~~Hs~~V~~~a~~l~~~~~~~~~~~~l~~aaLlHDiGk~~~~~ 44 (122)
T PF01966_consen 2 FEHSLRVAELAERLADRLGLEEDRELLRIAALLHDIGKIPTPD 44 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTHHSTHH
T ss_pred hhHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcCCCCCch
Confidence 35666666 1122 56778999999999999887664
No 9
>COG1078 HD superfamily phosphohydrolases [General function prediction only]
Probab=93.93 E-value=0.067 Score=41.01 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCchHHHH
Q psy17172 42 THLEIMASLLAAVAHDLDHPGVNQPFLI 69 (80)
Q Consensus 42 ~~~~~~a~l~aal~HDv~HpG~~N~fl~ 69 (80)
++.+...+.+|||.||+||+=.|=.|..
T Consensus 79 ~~~~~~~~~~AALLHDIGHgPFSH~fE~ 106 (421)
T COG1078 79 DEEERLLVRLAALLHDIGHGPFSHTFEY 106 (421)
T ss_pred chHHHHHHHHHHHHHccCCCccccchHH
Confidence 4455568999999999999988777654
No 10
>TIGR01353 dGTP_triPase deoxyguanosinetriphosphate triphosphohydrolase, putative. dGTP triphosphohydrolase (dgt) releases inorganic triphosphate, an unusual activity reaction product, from GTP. Its activity has been called limited to the Enterobacteriaceae, although homologous sequences are detected elsewhere. This finding casts doubt on whether the activity is shared in other species. In several of these other species, the homologous gene is found in an apparent operon with dnaG, the DNA primase gene. The enzyme from E. coli was shown to bind coopertatively to single stranded DNA. The biological role of dgt is unknown.
Probab=93.31 E-value=0.07 Score=40.34 Aligned_cols=37 Identities=16% Similarity=0.217 Sum_probs=24.3
Q ss_pred CCCh-hhhhhhhh-------hch----------HHHHHHHHHHHHHhcCCCCCCc
Q psy17172 28 YHNS-IHATDIKR-------HLT----------HLEIMASLLAAVAHDLDHPGVN 64 (80)
Q Consensus 28 yHN~-~Ha~dv~~-------~l~----------~~~~~a~l~aal~HDv~HpG~~ 64 (80)
+||. +|+..|++ .+. ..+.-.+-.|||+||+|||=..
T Consensus 36 ~~tRltHslev~~i~r~~~~~l~~~~~~~~~~~~~~~~l~~~a~L~HDiGhpPfg 90 (381)
T TIGR01353 36 VRTRLTHSLEVAQVGRSIANLIGLRYDLELEELGPFERLAETACLAHDIGNPPFG 90 (381)
T ss_pred CcCHhHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHhcCCCCCCc
Confidence 5664 79988881 111 1133467789999999999443
No 11
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=91.93 E-value=0.34 Score=34.24 Aligned_cols=56 Identities=16% Similarity=0.132 Sum_probs=40.4
Q ss_pred cccccCHHHHHHHHHHHHhhCCCCCCCCChhhhhhhh---hhch-------HHHHHHHHHHHHHhcCCC
Q psy17172 2 EHFNLDVVRVWKLFSLIEEGYHGTNPYHNSIHATDIK---RHLT-------HLEIMASLLAAVAHDLDH 60 (80)
Q Consensus 2 ~~f~i~~~~l~~fl~~i~~~Y~~~~pyHN~~Ha~dv~---~~l~-------~~~~~a~l~aal~HDv~H 60 (80)
..+.||...+.+-.....+... |=|.+.|..-|. ..+. ..+...+++||+.||+|=
T Consensus 31 ~~~~iPdt~l~~~a~~~~~~~l---~~~~~~Hs~RV~~~a~~ia~~e~~~~~~D~evl~lAALLHDIG~ 96 (228)
T TIGR03401 31 EDTPLPDTPLVKFAQEYAKARL---PPETYNHSLRVYYYGLAIARDQFPEWDLSDETWFLTCLLHDIGT 96 (228)
T ss_pred CCCCCCChHHHHHHHHHHHhhC---CHhhhHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhcc
Confidence 3468899999887777776664 238999998887 1111 234456889999999974
No 12
>KOG2681|consensus
Probab=91.29 E-value=0.19 Score=39.26 Aligned_cols=29 Identities=28% Similarity=0.440 Sum_probs=25.4
Q ss_pred hchHHHHHHHHHHHHHhcCCCCCCchHHH
Q psy17172 40 HLTHLEIMASLLAAVAHDLDHPGVNQPFL 68 (80)
Q Consensus 40 ~l~~~~~~a~l~aal~HDv~HpG~~N~fl 68 (80)
.+++.+..|.=+|||+||+||--.+-.|.
T Consensus 101 ~It~~d~~~vqvA~LLHDIGHGPfSHmFe 129 (498)
T KOG2681|consen 101 CITEVDLQAVQVAALLHDIGHGPFSHLFE 129 (498)
T ss_pred CCCHHHHHHHHHHHHHhhcCCCchhhhhh
Confidence 67899999999999999999987766664
No 13
>PRK01286 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=89.49 E-value=0.19 Score=37.60 Aligned_cols=36 Identities=22% Similarity=0.229 Sum_probs=21.4
Q ss_pred hhhhhhhhh-------hchHHHHHHHHHHHHHhcCCCCCCchHH
Q psy17172 31 SIHATDIKR-------HLTHLEIMASLLAAVAHDLDHPGVNQPF 67 (80)
Q Consensus 31 ~~Ha~dv~~-------~l~~~~~~a~l~aal~HDv~HpG~~N~f 67 (80)
.+|+..|++ .+...+ -.+-.|||+||+|||=++=.+
T Consensus 64 ~~Hsl~V~~iar~~~~~l~~~~-~l~~aaaL~HDiGh~PfgH~g 106 (336)
T PRK01286 64 LTHTLEVAQIARTIARALRLNE-DLTEAIALGHDLGHTPFGHAG 106 (336)
T ss_pred HHHHHHHHHHHHHHHHHhCCCH-HHHHHHHHHhcCCCCCCcchH
Confidence 367887771 121111 123458999999999554433
No 14
>PF07514 TraI_2: Putative helicase; InterPro: IPR011119 The members of this family are restricted to the proteobacteria. Some members have been annotated as helicase, conjugative relaxase or nickase. The majority contain an HD domain, which is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria.
Probab=89.03 E-value=0.4 Score=35.56 Aligned_cols=22 Identities=32% Similarity=0.306 Sum_probs=18.2
Q ss_pred hchHHHHHHHHHHHHHhcCCCC
Q psy17172 40 HLTHLEIMASLLAAVAHDLDHP 61 (80)
Q Consensus 40 ~l~~~~~~a~l~aal~HDv~Hp 61 (80)
..++....++++||||||+|-|
T Consensus 98 ~q~~~W~~avf~AALlhdlgk~ 119 (327)
T PF07514_consen 98 AQEPAWRYAVFYAALLHDLGKP 119 (327)
T ss_pred HHHhhhHHHHHHHHHHhccCcc
Confidence 4456667899999999999975
No 15
>COG0232 Dgt dGTP triphosphohydrolase [Nucleotide transport and metabolism]
Probab=88.53 E-value=0.24 Score=38.18 Aligned_cols=13 Identities=46% Similarity=0.749 Sum_probs=11.0
Q ss_pred HHHHHHHhcCCCC
Q psy17172 49 SLLAAVAHDLDHP 61 (80)
Q Consensus 49 ~l~aal~HDv~Hp 61 (80)
+=.|||+||+|||
T Consensus 99 ~E~a~LaHDiGhP 111 (412)
T COG0232 99 VETACLAHDIGHP 111 (412)
T ss_pred HHHHHHHhcCCCC
Confidence 4468999999999
No 16
>PRK01096 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=88.04 E-value=0.34 Score=37.42 Aligned_cols=15 Identities=33% Similarity=0.499 Sum_probs=12.9
Q ss_pred HHHHHHHHhcCCCCC
Q psy17172 48 ASLLAAVAHDLDHPG 62 (80)
Q Consensus 48 a~l~aal~HDv~HpG 62 (80)
.+-.|||+||+|||=
T Consensus 101 lv~aa~L~HDiGhpP 115 (440)
T PRK01096 101 IVQSACLAHDIGNPP 115 (440)
T ss_pred HHHHHHHHhcCCCCC
Confidence 567899999999993
No 17
>PRK04926 dgt deoxyguanosinetriphosphate triphosphohydrolase; Provisional
Probab=86.50 E-value=0.46 Score=37.40 Aligned_cols=14 Identities=29% Similarity=0.586 Sum_probs=11.9
Q ss_pred HHHHHHHHhcCCCC
Q psy17172 48 ASLLAAVAHDLDHP 61 (80)
Q Consensus 48 a~l~aal~HDv~Hp 61 (80)
.+-.|||+||+|||
T Consensus 109 lveaa~L~HDiGhp 122 (503)
T PRK04926 109 IVEMACLMHDIGNP 122 (503)
T ss_pred HHHHHHHHhcCCCC
Confidence 34589999999999
No 18
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=86.48 E-value=0.41 Score=33.00 Aligned_cols=35 Identities=20% Similarity=0.137 Sum_probs=22.5
Q ss_pred CCCCCChhhhhhhhhh---chHHHHHHHHHHHHHhcCCCC
Q psy17172 25 TNPYHNSIHATDIKRH---LTHLEIMASLLAAVAHDLDHP 61 (80)
Q Consensus 25 ~~pyHN~~Ha~dv~~~---l~~~~~~a~l~aal~HDv~Hp 61 (80)
.-|-=-..|+..++.. -... -.+++||+.||+||-
T Consensus 21 Ge~Vs~leH~LQ~A~lA~~~Gad--~elvvAALLHDIGhl 58 (179)
T TIGR03276 21 GEAVSQLEHALQCAQLAEAAGAD--DELIVAAFLHDIGHL 58 (179)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCC--HHHHHHHHHHhcchh
Confidence 3344446888888732 1111 245899999999984
No 19
>TIGR03760 ICE_TraI_Pfluor integrating conjugative element relaxase, PFL_4751 family. Members of this protein family are the TraI putative relaxases required for transfer by a subclass of integrating conjugative elements (ICE) as found in Pseudomonas fluorescens Pf-5, and understood from study of two related ICE, SXT and R391. This model represents the N-terminal domain. Note that no homology is detected to the similarly named TraI relaxase of the F plasmid.
Probab=85.41 E-value=1.5 Score=30.85 Aligned_cols=15 Identities=40% Similarity=0.472 Sum_probs=13.6
Q ss_pred HHHHHHHHHhcCCCC
Q psy17172 47 MASLLAAVAHDLDHP 61 (80)
Q Consensus 47 ~a~l~aal~HDv~Hp 61 (80)
.+++.||++||+|-+
T Consensus 106 ~~~~~aaLlHDlgK~ 120 (218)
T TIGR03760 106 AAVFYAALLHDLGKL 120 (218)
T ss_pred HHHHHHHHHHhhhhh
Confidence 589999999999876
No 20
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=85.25 E-value=1.5 Score=24.28 Aligned_cols=19 Identities=21% Similarity=0.295 Sum_probs=15.3
Q ss_pred HHHHHHHHhcCCCCCCchH
Q psy17172 48 ASLLAAVAHDLDHPGVNQP 66 (80)
Q Consensus 48 a~l~aal~HDv~HpG~~N~ 66 (80)
.+.+||++||+|-+.....
T Consensus 29 ~l~~AalLHDiG~~~~~~~ 47 (80)
T TIGR00277 29 LARRGALLHDIGKPITREG 47 (80)
T ss_pred HHHHHHHHHccCCcccchH
Confidence 4779999999998876543
No 21
>PRK05318 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=84.86 E-value=0.63 Score=35.83 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=12.4
Q ss_pred HHHHHHHhcCCCCCCc
Q psy17172 49 SLLAAVAHDLDHPGVN 64 (80)
Q Consensus 49 ~l~aal~HDv~HpG~~ 64 (80)
+-.|||+||+|||=..
T Consensus 95 ~~a~~L~HDiGhpPfg 110 (432)
T PRK05318 95 IESLCLAHDIGHPPFG 110 (432)
T ss_pred HHHHHHHhcCCCCCCc
Confidence 4578899999999443
No 22
>COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]
Probab=84.04 E-value=1.3 Score=32.69 Aligned_cols=43 Identities=21% Similarity=0.227 Sum_probs=36.1
Q ss_pred CCChhhhhhhh---------hhchHHHHHHHHHHHHHhcCCCCCCchHHHHh
Q psy17172 28 YHNSIHATDIK---------RHLTHLEIMASLLAAVAHDLDHPGVNQPFLIA 70 (80)
Q Consensus 28 yHN~~Ha~dv~---------~~l~~~~~~a~l~aal~HDv~HpG~~N~fl~~ 70 (80)
..+..|...|+ -.+++.++..+.+||+.||+|--|..+.-+.+
T Consensus 147 ~~t~~Hs~~va~~a~~ia~~lgl~~~~i~~l~~aalLHDIGKi~ip~~IL~K 198 (344)
T COG2206 147 DYTYGHSVRVAELAEAIAKKLGLSEEKIEELALAGLLHDIGKIGIPDSILNK 198 (344)
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcccccCCHHHhCC
Confidence 34788999998 35789999999999999999999988876644
No 23
>PRK03007 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=83.69 E-value=0.75 Score=35.50 Aligned_cols=36 Identities=22% Similarity=0.323 Sum_probs=22.6
Q ss_pred CCCh-hhhhhhhhh---c-hH--HHHHHHHHHHHHhcCCCCCC
Q psy17172 28 YHNS-IHATDIKRH---L-TH--LEIMASLLAAVAHDLDHPGV 63 (80)
Q Consensus 28 yHN~-~Ha~dv~~~---l-~~--~~~~a~l~aal~HDv~HpG~ 63 (80)
|||. +|+..|++. + .. .+.-.+-.|||+||+|||=.
T Consensus 68 ~~tRltHslev~~~~r~~~~~~~~~~~~~~~~~l~hd~GhpPf 110 (428)
T PRK03007 68 PRTRLTHSLEVAQIGRGIAAGLGCDPDLVDLAGLAHDIGHPPY 110 (428)
T ss_pred cccHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCCCC
Confidence 4554 788888821 1 11 11224668999999999943
No 24
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed
Probab=82.93 E-value=0.96 Score=34.45 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=24.7
Q ss_pred CCCCCC----hhhhhhhhhhchHH-HHHHHHHHHHHhcCCCCC
Q psy17172 25 TNPYHN----SIHATDIKRHLTHL-EIMASLLAAVAHDLDHPG 62 (80)
Q Consensus 25 ~~pyHN----~~Ha~dv~~~l~~~-~~~a~l~aal~HDv~HpG 62 (80)
...||. +.|...+++.+..+ .-..+.+||++||+|-|.
T Consensus 219 ~~~~H~e~dv~~Htl~~l~~~~~l~~~l~lr~AaLlHDlGK~~ 261 (409)
T PRK10885 219 PAKWHPEIDTGIHTLMVLDQAAKLSPSLDVRFAALCHDLGKGL 261 (409)
T ss_pred CcCCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHhccccCCC
Confidence 455664 57877776433221 123588999999999764
No 25
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=81.18 E-value=1.5 Score=29.15 Aligned_cols=43 Identities=14% Similarity=0.255 Sum_probs=29.5
Q ss_pred HHhhCCCCCCCCChhhhhhhh-------hhch----HHHHHHHHHHHHHhcCCCCC
Q psy17172 18 IEEGYHGTNPYHNSIHATDIK-------RHLT----HLEIMASLLAAVAHDLDHPG 62 (80)
Q Consensus 18 i~~~Y~~~~pyHN~~Ha~dv~-------~~l~----~~~~~a~l~aal~HDv~HpG 62 (80)
+-+.|. .|=+.+.|...|+ ..+. +.+.-.+.+||+.||+|-..
T Consensus 4 ll~~~~--~~~~~~~Hs~~Va~~A~~ia~~~~~~~~~~d~~~l~~aaLLHDIGK~~ 57 (164)
T TIGR00295 4 LLDKYK--CDESVRRHCLAVARVAMELAENIRKKGHEVDMDLVLKGALLHDIGRAR 57 (164)
T ss_pred HHHHhC--CCccHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHhcCCccc
Confidence 445564 4555889998887 2222 24566789999999998644
No 26
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=79.11 E-value=1.1 Score=31.45 Aligned_cols=37 Identities=19% Similarity=0.212 Sum_probs=27.9
Q ss_pred CChhhhhhhh---hhc---hHHHHHHHHHHHHHhcCCCCCCch
Q psy17172 29 HNSIHATDIK---RHL---THLEIMASLLAAVAHDLDHPGVNQ 65 (80)
Q Consensus 29 HN~~Ha~dv~---~~l---~~~~~~a~l~aal~HDv~HpG~~N 65 (80)
|.+.|...|. ..+ ...+...+..||+.||+|..=.++
T Consensus 36 ~~l~H~~~Va~lA~~Ia~~~g~D~~l~~~aaLLHDIg~~~~~~ 78 (222)
T COG1418 36 HVLEHSLRVAYLAYRIAEEEGVDPDLALRAALLHDIGKAIDHE 78 (222)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhccccccC
Confidence 8999999998 122 334778899999999999664443
No 27
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=76.41 E-value=1.3 Score=28.96 Aligned_cols=34 Identities=18% Similarity=0.113 Sum_probs=22.1
Q ss_pred Chhhhhhhh-------hhchHHHHHHHHHHHHHhcCCCCCCc
Q psy17172 30 NSIHATDIK-------RHLTHLEIMASLLAAVAHDLDHPGVN 64 (80)
Q Consensus 30 N~~Ha~dv~-------~~l~~~~~~a~l~aal~HDv~HpG~~ 64 (80)
.+.|...|. ..+. .+.-.+++||++||+|.....
T Consensus 9 r~~Hsl~Va~~a~~lA~~~~-~d~e~a~~AGLLHDIGk~~~~ 49 (158)
T TIGR00488 9 RYQHCLGVGQTAKQLAEANK-LDSKKAEIAGAYHDLAKFLPK 49 (158)
T ss_pred HHHHHHHHHHHHHHHHHHhC-cCHHHHHHHHHHHHHhccCCH
Confidence 567887776 2222 222358899999999985433
No 28
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=75.02 E-value=4.3 Score=33.22 Aligned_cols=37 Identities=22% Similarity=0.206 Sum_probs=22.9
Q ss_pred CCCCCC---hhhhhhhhhhchHH-----HHHHHHHHHHHhcCCCC
Q psy17172 25 TNPYHN---SIHATDIKRHLTHL-----EIMASLLAAVAHDLDHP 61 (80)
Q Consensus 25 ~~pyHN---~~Ha~dv~~~l~~~-----~~~a~l~aal~HDv~Hp 61 (80)
..+||. ..|...+.+.++.+ ..-.+.+||++||+|-+
T Consensus 373 ~d~yH~ytVDeHTL~~l~~~~~~~~~~~~~~lL~LAALlHDIGKg 417 (693)
T PRK00227 373 REPSHIHTIDEHSLNTVANCALETVTVARPDLLLLGALYHDIGKG 417 (693)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHhhhccCccHHHHHHHHHHhhcCC
Confidence 567775 34666555433221 12246899999999876
No 29
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=74.32 E-value=3.2 Score=34.19 Aligned_cols=16 Identities=31% Similarity=0.295 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhcCCCC
Q psy17172 46 IMASLLAAVAHDLDHP 61 (80)
Q Consensus 46 ~~a~l~aal~HDv~Hp 61 (80)
..++.+||++||+|.+
T Consensus 465 ~~~L~lAaLlHDiGKg 480 (850)
T TIGR01693 465 PELLYLAALLHDIGKG 480 (850)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 3478999999999974
No 30
>PRK05007 PII uridylyl-transferase; Provisional
Probab=72.94 E-value=3 Score=34.77 Aligned_cols=38 Identities=24% Similarity=0.282 Sum_probs=25.9
Q ss_pred CCCCCCCh---hhhhhhhhhchHH--------------------HHHHHHHHHHHhcCCCC
Q psy17172 24 GTNPYHNS---IHATDIKRHLTHL--------------------EIMASLLAAVAHDLDHP 61 (80)
Q Consensus 24 ~~~pyHN~---~Ha~dv~~~l~~~--------------------~~~a~l~aal~HDv~Hp 61 (80)
+..+||-. .|...|...+..+ ....+.+||++||+|-+
T Consensus 453 Q~d~~H~ytVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lL~lAaLlHDIGKg 513 (884)
T PRK05007 453 QFDLFHAYTVDEHTIRVLLKLESFADEETRQRHPLCVELYPRLPKKELLLLAALFHDIAKG 513 (884)
T ss_pred ccCccccCcHhHHHHHHHHHHHHHhcccccccchHHHHHHHhcCChhHHHHHHHHHhhcCC
Confidence 35678876 7877777433211 23478999999999865
No 31
>COG4341 Predicted HD phosphohydrolase [General function prediction only]
Probab=71.53 E-value=2.7 Score=29.08 Aligned_cols=48 Identities=25% Similarity=0.361 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhCCCCCCCCChhhhhhhhh--hchHHHHHHHHHHHHHhcCCC
Q psy17172 11 VWKLFSLIEEGYHGTNPYHNSIHATDIKR--HLTHLEIMASLLAAVAHDLDH 60 (80)
Q Consensus 11 l~~fl~~i~~~Y~~~~pyHN~~Ha~dv~~--~l~~~~~~a~l~aal~HDv~H 60 (80)
...|+..-...|. ..|-=-..|+...+. .=+.-+ -+++.|||.||+||
T Consensus 13 ~~~F~~~g~e~y~-ge~VTq~eHaLQ~AtlAerdGa~-~~lVaaALLHDiGh 62 (186)
T COG4341 13 AYLFLRHGDEGYS-GEPVTQLEHALQCATLAERDGAD-TALVAAALLHDIGH 62 (186)
T ss_pred HHHHHHccccccc-cCcchhhhhHHHHhHHHHhcCCc-HHHHHHHHHHhHHH
Confidence 3446666666785 777777888877761 111111 26788999999997
No 32
>PRK00106 hypothetical protein; Provisional
Probab=70.59 E-value=6.3 Score=31.41 Aligned_cols=50 Identities=12% Similarity=0.138 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhhCCCCCCCCChhhhhhhh-------hhchHHHHHHHHHHHHHhcCCCC
Q psy17172 9 VRVWKLFSLIEEGYHGTNPYHNSIHATDIK-------RHLTHLEIMASLLAAVAHDLDHP 61 (80)
Q Consensus 9 ~~l~~fl~~i~~~Y~~~~pyHN~~Ha~dv~-------~~l~~~~~~a~l~aal~HDv~Hp 61 (80)
..+.++|..+.-... -.. -.|.|+..|+ ..+. .+.--+.+|||.||+|-.
T Consensus 332 ~e~~~~lg~l~~r~s-y~q-nl~~HSv~VA~lA~~lA~~lg-ld~e~a~~AGLLHDIGK~ 388 (535)
T PRK00106 332 PDLIKIMGRLQFRTS-YGQ-NVLRHSVEVGKLAGILAGELG-ENVALARRAGFLHDMGKA 388 (535)
T ss_pred HHHHHHHHHHhhhcc-CCC-cHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHhccCc
Confidence 456677777765443 112 2789998887 1222 245578899999999865
No 33
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional
Probab=69.88 E-value=7.4 Score=30.07 Aligned_cols=15 Identities=7% Similarity=-0.162 Sum_probs=12.9
Q ss_pred HHHHHHHHhcCCCCC
Q psy17172 48 ASLLAAVAHDLDHPG 62 (80)
Q Consensus 48 a~l~aal~HDv~HpG 62 (80)
.+-+||+|||+|-|.
T Consensus 248 ~lR~AaLlHDiGK~~ 262 (417)
T PRK13298 248 DIRFSYLCQFLGSMI 262 (417)
T ss_pred HHHHHHHHhhhcCCC
Confidence 578999999999874
No 34
>TIGR01596 cas3_HD CRISPR-associated endonuclease Cas3-HD. CRISPR/Cas systems are widespread, mobile systems for host defense against invasive elements such as phage. In these systems, Cas3 designates one of the core proteins shared widely by multiple types of CRISPR/Cas system. This model represents an HD-like endonuclease that occurs either separately or as the N-terminal region of Cas3, the helicase-containing CRISPR-associated protein.
Probab=69.19 E-value=6.1 Score=25.44 Aligned_cols=16 Identities=25% Similarity=0.121 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhcCCCC
Q psy17172 46 IMASLLAAVAHDLDHP 61 (80)
Q Consensus 46 ~~a~l~aal~HDv~Hp 61 (80)
.-.+.++|+.||+|--
T Consensus 31 ~~~~~~~~~lHDiGK~ 46 (177)
T TIGR01596 31 RELLDLLALLHDIGKI 46 (177)
T ss_pred HHHHHHHHHHccCccC
Confidence 4478889999999964
No 35
>PRK05092 PII uridylyl-transferase; Provisional
Probab=69.00 E-value=4.3 Score=33.90 Aligned_cols=14 Identities=29% Similarity=0.415 Sum_probs=12.3
Q ss_pred HHHHHHHHhcCCCC
Q psy17172 48 ASLLAAVAHDLDHP 61 (80)
Q Consensus 48 a~l~aal~HDv~Hp 61 (80)
.+.+||++||+|.+
T Consensus 532 ~L~lAaLlHDIGKg 545 (931)
T PRK05092 532 ALYVAVLLHDIAKG 545 (931)
T ss_pred HHHHHHHHHHhhcC
Confidence 68999999999864
No 36
>PRK03381 PII uridylyl-transferase; Provisional
Probab=65.32 E-value=8.6 Score=31.62 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=23.0
Q ss_pred CCCCCCh---hhhhhhhhhchHH-----HHHHHHHHHHHhcCCCC
Q psy17172 25 TNPYHNS---IHATDIKRHLTHL-----EIMASLLAAVAHDLDHP 61 (80)
Q Consensus 25 ~~pyHN~---~Ha~dv~~~l~~~-----~~~a~l~aal~HDv~Hp 61 (80)
..+||.. .|...+.+.+..+ +.-.+.+||++||+|-+
T Consensus 413 ~~~~H~ytVd~Htl~~l~~~~~~~~~~~~~~lL~lAaLlHDiGKg 457 (774)
T PRK03381 413 RDPVHRWTVDRHLVETAVRAAALTRRVARPDLLLLGALLHDIGKG 457 (774)
T ss_pred CCCCccChHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCC
Confidence 5677764 4766665433221 11236899999999864
No 37
>PRK12704 phosphodiesterase; Provisional
Probab=61.16 E-value=14 Score=29.13 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhhCCCCCCCCChhhhhhhh-------h--hchHHHHHHHHHHHHHhcCCCC
Q psy17172 10 RVWKLFSLIEEGYHGTNPYHNSIHATDIK-------R--HLTHLEIMASLLAAVAHDLDHP 61 (80)
Q Consensus 10 ~l~~fl~~i~~~Y~~~~pyHN~~Ha~dv~-------~--~l~~~~~~a~l~aal~HDv~Hp 61 (80)
.+.+++..+ .|+....=.-+.|+..|+ . .+++. .+..||+.||+|-.
T Consensus 318 ~i~~ll~~l--~~R~~~~qn~l~Hs~~Va~lA~~lA~~lgld~~---~a~~AgLLHDIGK~ 373 (520)
T PRK12704 318 ELIKLLGRL--KYRTSYGQNVLQHSIEVAHLAGLMAAELGLDVK---LAKRAGLLHDIGKA 373 (520)
T ss_pred HHHHHHHHh--hccCcCCCcHhHHHHHHHHHHHHHHHHhCcCHH---HHHHHHHHHccCcC
Confidence 355666666 333111112457988887 1 23333 35689999999975
No 38
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=59.64 E-value=16 Score=28.77 Aligned_cols=49 Identities=14% Similarity=0.260 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhCCCCCCCCChhhhhhhh-------hhchHHHHHHHHHHHHHhcCCCC
Q psy17172 10 RVWKLFSLIEEGYHGTNPYHNSIHATDIK-------RHLTHLEIMASLLAAVAHDLDHP 61 (80)
Q Consensus 10 ~l~~fl~~i~~~Y~~~~pyHN~~Ha~dv~-------~~l~~~~~~a~l~aal~HDv~Hp 61 (80)
.+.+++..++ |+....--.+.|+..|+ ..+. ++.-.+..||+.||+|..
T Consensus 312 ~~~~~l~~l~--~r~~~~~~~l~Hs~~VA~lA~~LA~~lg-ld~~~a~~AGLLHDIGK~ 367 (514)
T TIGR03319 312 ELIKLLGRLK--FRTSYGQNVLQHSIEVAHLAGIMAAELG-EDVKLAKRAGLLHDIGKA 367 (514)
T ss_pred HHHHHHHHhh--ccccCCccHHHHHHHHHHHHHHHHHHhC-cCHHHHHHHHHHHhcCcc
Confidence 3455565544 33111112578998887 1221 122244589999999876
No 39
>TIGR02692 tRNA_CCA_actino tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase.
Probab=58.92 E-value=7.9 Score=29.77 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=21.9
Q ss_pred CChhhhhhhhhhchHH----HHHHHHHHHHHhcCCCCC
Q psy17172 29 HNSIHATDIKRHLTHL----EIMASLLAAVAHDLDHPG 62 (80)
Q Consensus 29 HN~~Ha~dv~~~l~~~----~~~a~l~aal~HDv~HpG 62 (80)
--+.|...|++.+..+ .-..+.+||++||+|-|.
T Consensus 258 ~v~~Htl~vl~~~~~l~~~~~~~~l~lAaLLHDiGK~~ 295 (466)
T TIGR02692 258 DVYEHSLTVLRQAIDLEDDGPDLVLRWAALLHDIGKPA 295 (466)
T ss_pred cHHHHHHHHHHHHHhccccccCHHHHHHHHHhhccCCC
Confidence 3456776666433211 123689999999999764
No 40
>PRK04374 PII uridylyl-transferase; Provisional
Probab=58.80 E-value=14 Score=30.96 Aligned_cols=14 Identities=36% Similarity=0.460 Sum_probs=12.0
Q ss_pred HHHHHHHHhcCCCC
Q psy17172 48 ASLLAAVAHDLDHP 61 (80)
Q Consensus 48 a~l~aal~HDv~Hp 61 (80)
.+.+|+++||+|-+
T Consensus 488 lL~lAaLlHDIGKg 501 (869)
T PRK04374 488 LLLLAGLFHDIAKG 501 (869)
T ss_pred HHHHHHHHHhccCC
Confidence 57999999999764
No 41
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=54.97 E-value=15 Score=30.58 Aligned_cols=14 Identities=29% Similarity=0.406 Sum_probs=12.1
Q ss_pred HHHHHHHHHhcCCC
Q psy17172 47 MASLLAAVAHDLDH 60 (80)
Q Consensus 47 ~a~l~aal~HDv~H 60 (80)
..+.+||++||+|-
T Consensus 474 ~~L~lAaLlHDIGK 487 (854)
T PRK01759 474 TLLYIAALFHDIAK 487 (854)
T ss_pred HHHHHHHHHHhhcC
Confidence 46799999999975
No 42
>PF09337 zf-H2C2: His(2)-Cys(2) zinc finger; InterPro: IPR015416 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents an H2C2-type zinc finger that binds to histone upstream activating sequence (UAS) elements found in histone gene promoters []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].
Probab=53.40 E-value=7.2 Score=20.33 Aligned_cols=13 Identities=38% Similarity=0.820 Sum_probs=10.6
Q ss_pred hcCCCCCCchHHH
Q psy17172 56 HDLDHPGVNQPFL 68 (80)
Q Consensus 56 HDv~HpG~~N~fl 68 (80)
|+.+|+|.+-.+.
T Consensus 1 H~~~H~Gi~kT~~ 13 (39)
T PF09337_consen 1 HNQGHPGINKTTA 13 (39)
T ss_pred CCccCCCHHHHHH
Confidence 7889999987654
No 43
>KOG3424|consensus
Probab=52.04 E-value=4.7 Score=26.48 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=21.1
Q ss_pred HhcCCCCCCchHHHHhhcChhHHhcC
Q psy17172 55 AHDLDHPGVNQPFLIATSNHLAALYE 80 (80)
Q Consensus 55 ~HDv~HpG~~N~fl~~t~~~LA~lYn 80 (80)
.-|+=|||..|.=-...+-.||.+|.
T Consensus 24 vvdvlHPG~a~vsK~EirEKla~mYk 49 (132)
T KOG3424|consen 24 VVDVLHPGKANVSKTEIREKLAKMYK 49 (132)
T ss_pred eEEEecCCCCCCCHHHHHHHHHHHhc
Confidence 45788999999877777888888883
No 44
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=51.02 E-value=12 Score=27.57 Aligned_cols=34 Identities=15% Similarity=0.210 Sum_probs=24.4
Q ss_pred Chhhhhhhh-------h--hchHHHHHHHHHHHHHhcCCCCCCchH
Q psy17172 30 NSIHATDIK-------R--HLTHLEIMASLLAAVAHDLDHPGVNQP 66 (80)
Q Consensus 30 N~~Ha~dv~-------~--~l~~~~~~a~l~aal~HDv~HpG~~N~ 66 (80)
-+.|+..|+ . .+++ --+.+||+.||+|=....+.
T Consensus 197 ~~~HSl~VA~~A~~LA~~~g~d~---~~a~~AGLLHDIGK~~~~~~ 239 (342)
T PRK07152 197 RYKHCLRVAQLAAELAKKNNLDP---KKAYYAGLYHDITKEWDEEK 239 (342)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCH---HHHHHHHHHHHhhccCCHHH
Confidence 788998887 1 2333 45678999999998654444
No 45
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=49.47 E-value=38 Score=26.32 Aligned_cols=45 Identities=13% Similarity=0.156 Sum_probs=32.3
Q ss_pred HHHHHHHHHhhCCCCCCCCChhhhhhhh-------------hhchHHHHHHHHHHHHHhcCCC
Q psy17172 11 VWKLFSLIEEGYHGTNPYHNSIHATDIK-------------RHLTHLEIMASLLAAVAHDLDH 60 (80)
Q Consensus 11 l~~fl~~i~~~Y~~~~pyHN~~Ha~dv~-------------~~l~~~~~~a~l~aal~HDv~H 60 (80)
....+..+..+|. - +..||..|. ..+++.+...+-.||+.||+|-
T Consensus 309 ~~~s~~~l~~ry~-~----d~~ha~~v~~~a~~Lf~~l~~~~~l~~~~~~LL~~Aa~LhdiG~ 366 (496)
T PRK11031 309 RSRTLRNIQRRFQ-I----DTEQAQRVAKLADNFLQQVENEWHLEPRSRELLISACQLHEIGL 366 (496)
T ss_pred HHHHHHHHHHHcC-c----CHHHHHHHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHhcCC
Confidence 3445777888885 2 345776666 2456778889999999999983
No 46
>PF13328 HD_4: HD domain; PDB: 3NR1_B.
Probab=46.94 E-value=10 Score=24.49 Aligned_cols=32 Identities=28% Similarity=0.455 Sum_probs=20.6
Q ss_pred CCCCCChhhhhhhhhhchHHH-HHHHHHHHHHhcC
Q psy17172 25 TNPYHNSIHATDIKRHLTHLE-IMASLLAAVAHDL 58 (80)
Q Consensus 25 ~~pyHN~~Ha~dv~~~l~~~~-~~a~l~aal~HDv 58 (80)
+.|| +.|...|+..+.... --..++||+.||+
T Consensus 17 g~py--~~H~~~va~~l~~~~~d~~~i~aalLHD~ 49 (153)
T PF13328_consen 17 GEPY--ISHPLEVAEILAELGLDEETIAAALLHDV 49 (153)
T ss_dssp --BT--THHHHHHHHHHHTS---HHHHHHHHHTTH
T ss_pred CCcH--HHHHHHHHHHHHHcCCCHHHHhhheeecH
Confidence 7788 469999985543321 1257889999997
No 47
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=45.02 E-value=22 Score=29.48 Aligned_cols=46 Identities=17% Similarity=0.264 Sum_probs=29.8
Q ss_pred HHHHHHHHhhCCCCCCCCChhhhhhhhhhchHHHH-HHHHHHHHHhcCC
Q psy17172 12 WKLFSLIEEGYHGTNPYHNSIHATDIKRHLTHLEI-MASLLAAVAHDLD 59 (80)
Q Consensus 12 ~~fl~~i~~~Y~~~~pyHN~~Ha~dv~~~l~~~~~-~a~l~aal~HDv~ 59 (80)
+.|......+-.++-|| ..|+..|+..+..+.. ...++|||.||+-
T Consensus 39 ~~~a~~~H~gr~sGepy--i~Hpl~vA~iLa~~~~D~~ti~AaLLHD~v 85 (743)
T PRK10872 39 WAYCLQQTQGHPDASLL--LWRGVEMVEILSTLSMDIDTLRAALLFPLA 85 (743)
T ss_pred HHHHHHhccCCCCCChh--hhhHHHHHHHHHHcCCCHHHHHHHHhhhhH
Confidence 33443333332236788 5899999977654333 3678899999984
No 48
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=43.07 E-value=24 Score=29.59 Aligned_cols=14 Identities=21% Similarity=0.349 Sum_probs=12.3
Q ss_pred HHHHHHHHhcCCCC
Q psy17172 48 ASLLAAVAHDLDHP 61 (80)
Q Consensus 48 a~l~aal~HDv~Hp 61 (80)
.+.+||++||+|-+
T Consensus 499 lL~lAaLlHDIGKg 512 (895)
T PRK00275 499 LLYIAGLYHDIGKG 512 (895)
T ss_pred HHHHHHHHHhhhcC
Confidence 67999999999865
No 49
>KOG1573|consensus
Probab=41.90 E-value=32 Score=23.96 Aligned_cols=33 Identities=24% Similarity=0.170 Sum_probs=21.2
Q ss_pred CCCCCChhhhhhhhhh----chHHHHHHHHHHHHHhcCC
Q psy17172 25 TNPYHNSIHATDIKRH----LTHLEIMASLLAAVAHDLD 59 (80)
Q Consensus 25 ~~pyHN~~Ha~dv~~~----l~~~~~~a~l~aal~HDv~ 59 (80)
+.-.=|..||...++. .-+.++ +-++||+||+|
T Consensus 92 DlDepni~Ha~QtAE~iR~~~Pd~dW--lHLtaLiHDLG 128 (204)
T KOG1573|consen 92 DLDEPNIQHALQTAEAIRKDYPDEDW--LHLTALIHDLG 128 (204)
T ss_pred CCchHHHHHHHHHHHHHHHhCCCccH--HHHHHHHHHHH
Confidence 4455577777776632 333444 56789999986
No 50
>PRK12705 hypothetical protein; Provisional
Probab=39.30 E-value=47 Score=26.40 Aligned_cols=48 Identities=13% Similarity=0.180 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhhCCCCCCCCChhhhhhhhh---------hchHHHHHHHHHHHHHhcCCCC
Q psy17172 9 VRVWKLFSLIEEGYHGTNPYHNSIHATDIKR---------HLTHLEIMASLLAAVAHDLDHP 61 (80)
Q Consensus 9 ~~l~~fl~~i~~~Y~~~~pyHN~~Ha~dv~~---------~l~~~~~~a~l~aal~HDv~Hp 61 (80)
..+..++..++ |+....---+.|+..|+. .+++. .+..||+.||+|..
T Consensus 305 ~~li~~Lg~L~--~R~sygqnvl~HSl~VA~lA~~LA~~lGld~d---~a~~AGLLHDIGK~ 361 (508)
T PRK12705 305 PGLVRLLGRLY--FRTSYGQNVLSHSLEVAHLAGIIAAEIGLDPA---LAKRAGLLHDIGKS 361 (508)
T ss_pred HHHHHHHHHHh--hcccCCchHHHHHHHHHHHHHHHHHHcCcCHH---HHHHHHHHHHcCCc
Confidence 44555665553 431111124679888871 23332 24579999999985
No 51
>COG3294 HD supefamily hydrolase [General function prediction only]
Probab=36.06 E-value=28 Score=25.43 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHhcCCCC
Q psy17172 44 LEIMASLLAAVAHDLDHP 61 (80)
Q Consensus 44 ~~~~a~l~aal~HDv~Hp 61 (80)
.+....+++|..||+|+.
T Consensus 95 D~~vivlLga~LHDIGns 112 (269)
T COG3294 95 DSPVIVLLGAYLHDIGNS 112 (269)
T ss_pred hhhHHHHHHHHHHhccch
Confidence 345688999999999964
No 52
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=36.02 E-value=34 Score=28.16 Aligned_cols=33 Identities=27% Similarity=0.509 Sum_probs=23.9
Q ss_pred CCCCCChhhhhhhhhhchHHHH-HHHHHHHHHhcCC
Q psy17172 25 TNPYHNSIHATDIKRHLTHLEI-MASLLAAVAHDLD 59 (80)
Q Consensus 25 ~~pyHN~~Ha~dv~~~l~~~~~-~a~l~aal~HDv~ 59 (80)
+.|| ..|+..|+..+.++.. ...+.||+.||+-
T Consensus 42 GePY--i~Hpl~VA~iLa~l~~D~~ti~AaLLHDvv 75 (702)
T PRK11092 42 GEPY--ITHPVAVACILAEMRLDYETLMAALLHDVI 75 (702)
T ss_pred CCcH--HHHHHHHHHHHHHcCCCHHHHHHhcccchh
Confidence 5688 6899999976653321 2468999999984
No 53
>KOG0324|consensus
Probab=35.40 E-value=41 Score=23.95 Aligned_cols=33 Identities=27% Similarity=0.431 Sum_probs=26.9
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCCC----Chhhhhhhh
Q psy17172 5 NLDVVRVWKLFSLIEEGYHGTNPYH----NSIHATDIK 38 (80)
Q Consensus 5 ~i~~~~l~~fl~~i~~~Y~~~~pyH----N~~Ha~dv~ 38 (80)
.++.+.+.+||.++-..|+ .+.|| |-.|-.+.+
T Consensus 84 d~~~~~v~~~le~L~~ey~-G~~YhL~~kNCNHFsn~l 120 (214)
T KOG0324|consen 84 DLTEDDVRRILEELSEEYR-GNSYHLLTKNCNHFSNEL 120 (214)
T ss_pred CCCHHHHHHHHHHHHhhcC-CceehhhhhccchhHHHH
Confidence 4678999999999999998 99997 555665554
No 54
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=34.77 E-value=21 Score=26.92 Aligned_cols=34 Identities=12% Similarity=0.173 Sum_probs=22.7
Q ss_pred Chhhhhhhhh---hch---HHHHHHHHHHHHHhcCCCCCC
Q psy17172 30 NSIHATDIKR---HLT---HLEIMASLLAAVAHDLDHPGV 63 (80)
Q Consensus 30 N~~Ha~dv~~---~l~---~~~~~a~l~aal~HDv~HpG~ 63 (80)
-+.|...|.. .+. +.+.-.+..||+.||+|....
T Consensus 188 l~~Hs~rVa~lA~~LA~~~~~D~~ll~aAALLHDIGK~k~ 227 (339)
T PRK12703 188 LIRHVKTVYKLAMRIADCINADRRLVAAGALLHDIGRTKT 227 (339)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcccccc
Confidence 6788888871 111 134446778999999986654
No 55
>PRK10854 exopolyphosphatase; Provisional
Probab=33.15 E-value=98 Score=24.16 Aligned_cols=46 Identities=11% Similarity=0.009 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhhCCCCCCCCChhhhhhhh-------h-------h-chHHHHHHHHHHHHHhcCC
Q psy17172 9 VRVWKLFSLIEEGYHGTNPYHNSIHATDIK-------R-------H-LTHLEIMASLLAAVAHDLD 59 (80)
Q Consensus 9 ~~l~~fl~~i~~~Y~~~~pyHN~~Ha~dv~-------~-------~-l~~~~~~a~l~aal~HDv~ 59 (80)
+.+..-+..+...|. . +..||..|. . . +++.+...+-.||+.||+|
T Consensus 313 d~~~~s~~~la~ry~-~----d~~ha~~V~~~a~~LFd~l~~~h~~~~~~~~~~LL~~Aa~LhdiG 373 (513)
T PRK10854 313 DIRSRTAKSLANHYN-I----DREQARRVLETTMQLYEQWREQNPKLAHPQLEALLKWAAMLHEVG 373 (513)
T ss_pred cHHHHHHHHHHHHcC-C----CHHHHHHHHHHHHHHHHhhhhhhcccCCHHHHHHHHHHHHHHhcC
Confidence 344556677778886 3 345666665 1 1 3667778899999999998
No 56
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=33.06 E-value=32 Score=18.11 Aligned_cols=16 Identities=0% Similarity=0.071 Sum_probs=10.7
Q ss_pred cccccCHHHHHHHHHH
Q psy17172 2 EHFNLDVVRVWKLFSL 17 (80)
Q Consensus 2 ~~f~i~~~~l~~fl~~ 17 (80)
+.|+||..+|++.+..
T Consensus 24 ~~ygVp~sTL~~r~~g 39 (45)
T PF05225_consen 24 KKYGVPRSTLRRRLRG 39 (45)
T ss_dssp HHHT--HHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHcC
Confidence 4689999999976653
No 57
>PF12917 HD_2: HD containing hydrolase-like enzyme ; PDB: 3MZO_B.
Probab=32.21 E-value=46 Score=23.73 Aligned_cols=50 Identities=16% Similarity=0.212 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhhCCCCCCC----CC-hhhhhhhh-----------hhchHHHHHHHHHHHHHhcCC
Q psy17172 10 RVWKLFSLIEEGYHGTNPY----HN-SIHATDIK-----------RHLTHLEIMASLLAAVAHDLD 59 (80)
Q Consensus 10 ~l~~fl~~i~~~Y~~~~py----HN-~~Ha~dv~-----------~~l~~~~~~a~l~aal~HDv~ 59 (80)
+++.-|..++.-+|++.-| || +.|++-|+ ..-..+++-.++.-|++||+.
T Consensus 5 ~f~~~l~~le~I~R~pg~fk~~~~nVA~HSf~Va~iA~~Lg~iee~~G~~vd~~~lyekAL~HD~~ 70 (215)
T PF12917_consen 5 QFFQSLSRLETIIRWPGMFKFQEHNVAEHSFKVAMIAQFLGDIEEQFGNEVDWKELYEKALNHDYP 70 (215)
T ss_dssp HHHHHHHHTTSSBSSTSS--SS--BHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTGG
T ss_pred HHHHHHHhhHHHHHccCccCcchhhHHHHHHHHHHHHHHHHHHHHHhCCccCHHHHHHHHhccccH
Confidence 4455566666666643333 22 24666666 233456777999999999984
No 58
>COG5385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.13 E-value=28 Score=24.42 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=18.6
Q ss_pred hchHHHHHHHHHHHHHhcCCCC
Q psy17172 40 HLTHLEIMASLLAAVAHDLDHP 61 (80)
Q Consensus 40 ~l~~~~~~a~l~aal~HDv~Hp 61 (80)
-++..|+.+++.+-+|||+=-|
T Consensus 8 tlsgpDlaAlLcsRvCHDiISP 29 (214)
T COG5385 8 TLSGPDLAALLCSRVCHDIISP 29 (214)
T ss_pred ccccccHHHHHHHHHHhhccCc
Confidence 3577788999999999999766
No 59
>PRK03059 PII uridylyl-transferase; Provisional
Probab=31.80 E-value=29 Score=29.01 Aligned_cols=15 Identities=27% Similarity=0.313 Sum_probs=12.9
Q ss_pred HHHHHHHHHhcCCCC
Q psy17172 47 MASLLAAVAHDLDHP 61 (80)
Q Consensus 47 ~a~l~aal~HDv~Hp 61 (80)
..+.+||+.||+|-|
T Consensus 478 ~lL~LAaLlHDIGKg 492 (856)
T PRK03059 478 WLLYVAALFHDIAKG 492 (856)
T ss_pred hHHHHHHHHHhhccC
Confidence 468999999999865
No 60
>COG1353 Predicted CRISPR-associated polymerase [Defense mechanisms]
Probab=31.55 E-value=37 Score=28.28 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCchHHHHhhcChh
Q psy17172 44 LEIMASLLAAVAHDLDHPGVNQPFLIATSNHL 75 (80)
Q Consensus 44 ~~~~a~l~aal~HDv~HpG~~N~fl~~t~~~L 75 (80)
.|...+.++||.||++ .|.+++.++.
T Consensus 3 ~~~~~~~i~aLLHD~g------k~~~r~~~~~ 28 (799)
T COG1353 3 NEFEELKIAALLHDIG------KFTQRAKSGR 28 (799)
T ss_pred hHHHHHHHHHHhcCCc------hhhhcccCcc
Confidence 4667889999999998 6666666654
No 61
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=30.93 E-value=28 Score=28.39 Aligned_cols=33 Identities=30% Similarity=0.456 Sum_probs=23.9
Q ss_pred CCCCCChhhhhhhhhhchHHHH-HHHHHHHHHhcCC
Q psy17172 25 TNPYHNSIHATDIKRHLTHLEI-MASLLAAVAHDLD 59 (80)
Q Consensus 25 ~~pyHN~~Ha~dv~~~l~~~~~-~a~l~aal~HDv~ 59 (80)
+-|| ..|...|+..+..+.. ...++||+.||+-
T Consensus 17 g~PY--i~Hpl~VA~iL~~~~~D~~~i~AaLLHDvv 50 (683)
T TIGR00691 17 GEPY--IIHPLAVALILAELGMDEETVCAALLHDVI 50 (683)
T ss_pred CCcH--HHHHHHHHHHHHHhCCCHHHHHHHhccchH
Confidence 5688 5799999976653321 2468899999984
No 62
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=28.61 E-value=17 Score=23.96 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=16.3
Q ss_pred cCCCCCCchHHHHhhcChhHHhcC
Q psy17172 57 DLDHPGVNQPFLIATSNHLAALYE 80 (80)
Q Consensus 57 Dv~HpG~~N~fl~~t~~~LA~lYn 80 (80)
|+-|||..+.=...-+..||.+|+
T Consensus 27 ~v~Hpg~~TpSr~eirekLA~~~~ 50 (132)
T PTZ00071 27 EVLHPGKGTVSKKDIKEKLAKQYK 50 (132)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHhC
Confidence 677888766555556667777664
No 63
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=28.54 E-value=75 Score=26.41 Aligned_cols=40 Identities=30% Similarity=0.465 Sum_probs=29.1
Q ss_pred CCCCCChhhhhhhhhhchHHHH-HHHHHHHHHhcCC-CCCCchH
Q psy17172 25 TNPYHNSIHATDIKRHLTHLEI-MASLLAAVAHDLD-HPGVNQP 66 (80)
Q Consensus 25 ~~pyHN~~Ha~dv~~~l~~~~~-~a~l~aal~HDv~-HpG~~N~ 66 (80)
..|| ..|...|+..+..+.. ...++||+.||+- -.+.+..
T Consensus 46 GePY--i~Hpl~Va~iLael~~d~~tl~AaLLHD~vEDt~~t~e 87 (701)
T COG0317 46 GEPY--ISHPLEVAEILAELHMDMETLAAALLHDTIEDTPVTEE 87 (701)
T ss_pred CCch--hhCHHHHHHHHHHccCCHHHHHHHHccchHhcCCCCHH
Confidence 7888 7899999977766643 3677899999984 3444443
No 64
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=28.02 E-value=18 Score=22.66 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=14.8
Q ss_pred cCCCCCCchHHHHhhcChhHHhcC
Q psy17172 57 DLDHPGVNQPFLIATSNHLAALYE 80 (80)
Q Consensus 57 Dv~HpG~~N~fl~~t~~~LA~lYn 80 (80)
|+-|||..+-=...-+..||.+|+
T Consensus 22 ~v~h~g~~tpsr~eirekLa~~~~ 45 (99)
T PRK01178 22 EVYHEGSATPSRKDVRKKLAAMLN 45 (99)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHC
Confidence 667888655544455666666664
No 65
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=26.23 E-value=41 Score=24.93 Aligned_cols=17 Identities=24% Similarity=0.243 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhcCCC
Q psy17172 44 LEIMASLLAAVAHDLDH 60 (80)
Q Consensus 44 ~~~~a~l~aal~HDv~H 60 (80)
++.=.++.+|+.||+|-
T Consensus 181 ~n~dll~agalLHDiGK 197 (314)
T PRK13480 181 LNKDLLYAGIILHDLGK 197 (314)
T ss_pred cCHHHHHHHHHHHHhhh
Confidence 33345889999999983
No 66
>PF02163 Peptidase_M50: Peptidase family M50; InterPro: IPR008915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains metallopeptidases belonging to MEROPS peptidase family M50 (S2P protease family, clan MM). Members of the M50 metallopeptidase family include: mammalian sterol-regulatory element binding protein (SREBP) site 2 protease, Escherichia coli protease EcfE, stage IV sporulation protein FB and various hypothetical bacterial and eukaryotic homologues. A number of proteins are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity.; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3B4R_A 3ID4_A 3ID2_A 2ZPL_B 3ID1_A 2ZPM_A 3ID3_B 2HGA_A.
Probab=26.19 E-value=21 Score=23.61 Aligned_cols=16 Identities=44% Similarity=0.740 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhcCCCC
Q psy17172 46 IMASLLAAVAHDLDHP 61 (80)
Q Consensus 46 ~~a~l~aal~HDv~Hp 61 (80)
.++++++-.+|+++|-
T Consensus 3 ~~~~~i~i~~HE~gH~ 18 (192)
T PF02163_consen 3 ILALLISIVLHELGHA 18 (192)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccc
Confidence 4678889999999884
No 67
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=26.07 E-value=21 Score=21.49 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=12.5
Q ss_pred cCCCCCCchHHHHhhcChhHHhcC
Q psy17172 57 DLDHPGVNQPFLIATSNHLAALYE 80 (80)
Q Consensus 57 Dv~HpG~~N~fl~~t~~~LA~lYn 80 (80)
|+.|||...-=....+..||.+||
T Consensus 4 ~v~h~g~~Tpsr~ei~~klA~~~~ 27 (84)
T PF01282_consen 4 EVLHPGKPTPSRKEIREKLAAMLN 27 (84)
T ss_dssp EEE-SSSSS--HHHHHHHHHHHHT
T ss_pred EEECCCCCCCCHHHHHHHHHHHhC
Confidence 566788555544555556666654
No 68
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=25.22 E-value=77 Score=23.62 Aligned_cols=17 Identities=35% Similarity=0.391 Sum_probs=15.3
Q ss_pred hhchHHHHHHHHHHHHH
Q psy17172 39 RHLTHLEIMASLLAAVA 55 (80)
Q Consensus 39 ~~l~~~~~~a~l~aal~ 55 (80)
+.+++.++.|+.+|+++
T Consensus 122 Erls~~Q~iAV~lA~~G 138 (293)
T COG2962 122 ERLSRLQWIAVGLAAAG 138 (293)
T ss_pred hhccHHHHHHHHHHHHH
Confidence 79999999999999875
No 69
>PF13518 HTH_28: Helix-turn-helix domain
Probab=25.00 E-value=72 Score=16.17 Aligned_cols=19 Identities=16% Similarity=0.352 Sum_probs=15.8
Q ss_pred cccccCHHHHHHHHHHHHh
Q psy17172 2 EHFNLDVVRVWKLFSLIEE 20 (80)
Q Consensus 2 ~~f~i~~~~l~~fl~~i~~ 20 (80)
+.|+|+..++.+++...+.
T Consensus 20 ~~~gis~~tv~~w~~~y~~ 38 (52)
T PF13518_consen 20 REFGISRSTVYRWIKRYRE 38 (52)
T ss_pred HHHCCCHhHHHHHHHHHHh
Confidence 3689999999999888776
No 70
>PF11212 DUF2999: Protein of unknown function (DUF2999); InterPro: IPR021376 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=20.85 E-value=72 Score=19.23 Aligned_cols=18 Identities=6% Similarity=0.252 Sum_probs=14.3
Q ss_pred cccccCHHHHHHHHHHHH
Q psy17172 2 EHFNLDVVRVWKLFSLIE 19 (80)
Q Consensus 2 ~~f~i~~~~l~~fl~~i~ 19 (80)
+.++||++++...+..+-
T Consensus 37 ~qLGip~eKLQ~lm~~VM 54 (82)
T PF11212_consen 37 QQLGIPQEKLQQLMAQVM 54 (82)
T ss_pred HHcCCCHHHHHHHHHHHh
Confidence 468899999998877664
No 71
>PF05153 DUF706: Family of unknown function (DUF706) ; InterPro: IPR007828 Inositol oxygenase (1.13.99.1 from EC) is involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. It may be also involved in plant ascorbate biosynthesis [, ].; GO: 0005506 iron ion binding, 0050113 inositol oxygenase activity, 0019310 inositol catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 2HUO_A 3BXD_A 2IBN_A.
Probab=20.72 E-value=1e+02 Score=22.52 Aligned_cols=46 Identities=15% Similarity=0.202 Sum_probs=22.7
Q ss_pred HHHHHHHHhhCCCCCCCCChhhhhhhhhhch----HHHHHHHHHHHHHhcCC
Q psy17172 12 WKLFSLIEEGYHGTNPYHNSIHATDIKRHLT----HLEIMASLLAAVAHDLD 59 (80)
Q Consensus 12 ~~fl~~i~~~Y~~~~pyHN~~Ha~dv~~~l~----~~~~~a~l~aal~HDv~ 59 (80)
...|..+-...-.++..=|..|+...++.+. +.++ +-+++++||+|
T Consensus 45 ~~~L~~LvDeSDPD~d~~~i~H~lQTAEaiR~d~~~~dW--~~LtGLiHDLG 94 (253)
T PF05153_consen 45 LELLNTLVDESDPDTDLPQIQHALQTAEAIRRDHPDPDW--MQLTGLIHDLG 94 (253)
T ss_dssp HHHGGG---TT-TT--S-HHHHHHHHHHHHHHHSTT-HH--HHHHHHHTTGG
T ss_pred HHHHHHhccCccCCCchhHHHHHHHHHHHHHHhCCCcch--hhheehhccch
Confidence 3344444333333555667777777664332 2344 45789999987
No 72
>PHA03375 hypothetical protein; Provisional
Probab=20.25 E-value=1.1e+02 Score=25.75 Aligned_cols=35 Identities=17% Similarity=0.336 Sum_probs=25.6
Q ss_pred HHHHHHhhCCCCCCCCChhhhhhhhhhchHHHHHHHHHHHHHhcCC
Q psy17172 14 LFSLIEEGYHGTNPYHNSIHATDIKRHLTHLEIMASLLAAVAHDLD 59 (80)
Q Consensus 14 fl~~i~~~Y~~~~pyHN~~Ha~dv~~~l~~~~~~a~l~aal~HDv~ 59 (80)
|+.++|+-+. .++|||..= .|.|.-++|++-+|-+
T Consensus 258 flLELqKlwl-~V~yhn~vT----------~dFF~~v~~~~h~d~~ 292 (844)
T PHA03375 258 FLLELQKLWL-GVSYHNAVT----------TDFFNVVFAAFHRDKG 292 (844)
T ss_pred HHHHHhhhhh-eeeecchhh----------HHHHHHHHHHHhhhhh
Confidence 7999999998 999999832 3455566666666543
Done!