RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17172
(80 letters)
>3ecm_A High affinity CAMP-specific and IBMX-insensitive 3',5'-cyclic
phosphodiesterase 8A...; phosphodiesterase 8A PDE8A
inhibitor selectivity; 1.90A {Homo sapiens} PDB: 3ecn_A*
Length = 338
Score = 98.0 bits (244), Expect = 1e-26
Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 13/92 (14%)
Query: 1 MEHFNLDVVRVWKLFSLIEEGYHGTNPYHNSIHATD-------------IKRHLTHLEIM 47
E + + +IE YH +NPYHNS H+ D IK L ++ +
Sbjct: 47 CEFLHCSESTLRSWLQIIEANYHSSNPYHNSTHSADVLHATAYFLSKERIKETLDPIDEV 106
Query: 48 ASLLAAVAHDLDHPGVNQPFLIATSNHLAALY 79
A+L+AA HD+DHPG FL + LA LY
Sbjct: 107 AALIAATIHDVDHPGRTNSFLCNAGSELAILY 138
>1tbf_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5A, hydrolase;
HET: VIA; 1.30A {Homo sapiens} SCOP: a.211.1.2 PDB:
1t9s_A* 1xoz_A* 1xp0_A* 2chm_A* 3tge_A* 3tgg_A* 3hc8_A*
3hdz_A* 1t9r_A* 3sie_A* 3shy_A* 3shz_A* 3b2r_A* 2h44_A*
2h42_A* 2h40_A* 1rkp_A* 1udt_A* 1udu_A* 1uho_A* ...
Length = 347
Score = 97.9 bits (244), Expect = 1e-26
Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 13/92 (14%)
Query: 1 MEHFNLDVVRVWKLFSLIEEGYHGTNPYHNSIHATD-------------IKRHLTHLEIM 47
+++F + + + +++ Y YHN HA + I+ LT LEI+
Sbjct: 73 VQNFQMKHEVLCRWILSVKKNYRKNVAYHNWRHAFNTAQCMFAALKAGKIQNKLTDLEIL 132
Query: 48 ASLLAAVAHDLDHPGVNQPFLIATSNHLAALY 79
A L+AA++HDLDHPGV+ FLI T++ LA +Y
Sbjct: 133 ALLIAALSHDLDHPGVSNQFLINTNSELALMY 164
>1f0j_A PDE4B, phosphodiesterase 4B; PDE phosphodiesterase, hydrolase;
1.77A {Homo sapiens} SCOP: a.211.1.2 PDB: 1ro6_A*
1ro9_A* 1ror_A* 3hmv_A* 1tb5_A* 1xm6_A* 1xlx_A* 1xm4_A*
1xlz_A* 1xmu_A* 1xmy_A* 1xn0_A* 1xos_A* 1xot_B* 1y2h_A*
1y2j_A* 3kkt_A* 3g4i_A* 3g4k_A* 3g4l_A* ...
Length = 377
Score = 96.1 bits (239), Expect = 1e-25
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 13/92 (14%)
Query: 1 MEHFNLDVVRVWKLFSLIEEGYHGTNPYHNSIHATD-------------IKRHLTHLEIM 47
++ F + +E+ YH YHNS+HA D + T LEI+
Sbjct: 55 LKTFRISSDTFITYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDAVFTDLEIL 114
Query: 48 ASLLAAVAHDLDHPGVNQPFLIATSNHLAALY 79
A++ AA HD+DHPGV+ FLI T++ LA +Y
Sbjct: 115 AAIFAAAIHDVDHPGVSNQFLINTNSELALMY 146
>3g4g_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D;
PDE4D, UCR2, alternative splicing, cytoplasm,
cytoskeleton, hydrolase, membrane; HET: D71; 2.30A {Homo
sapiens} PDB: 3g45_A*
Length = 421
Score = 94.6 bits (235), Expect = 5e-25
Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 13/92 (14%)
Query: 1 MEHFNLDVVRVWKLFSLIEEGYHGTNPYHNSIHATD-------------IKRHLTHLEIM 47
++ F + V + +E+ YH YHN+IHA D ++ T LEI+
Sbjct: 134 LKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDLEIL 193
Query: 48 ASLLAAVAHDLDHPGVNQPFLIATSNHLAALY 79
A++ A+ HD+DHPGV+ FLI T++ LA +Y
Sbjct: 194 AAIFASAIHDVDHPGVSNQFLINTNSELALMY 225
>1y2k_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D;
PDE4D, pyrazole, hydrolase; HET: 7DE; 1.36A {Homo
sapiens} SCOP: a.211.1.2 PDB: 1xon_A* 1xoq_A* 1xom_A*
1xor_A* 1y2c_A* 1y2d_A* 1y2e_A* 1y2b_A* 3iak_A* 3k4s_A*
1tbb_A* 1tb7_A* 3sl5_A* 3sl4_A* 2fm5_A* 3sl3_A* 2fm0_A*
3sl6_A* 3sl8_A* 1oyn_A* ...
Length = 349
Score = 93.7 bits (233), Expect = 5e-25
Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 13/92 (14%)
Query: 1 MEHFNLDVVRVWKLFSLIEEGYHGTNPYHNSIHATD-------------IKRHLTHLEIM 47
++ F + V + +E+ YH YHN+IHA D ++ T LEI+
Sbjct: 68 LKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDLEIL 127
Query: 48 ASLLAAVAHDLDHPGVNQPFLIATSNHLAALY 79
A++ A+ HD+DHPGV+ FLI T++ LA +Y
Sbjct: 128 AAIFASAIHDVDHPGVSNQFLINTNSELALMY 159
>1zkl_A HCP1, TM22, high-affinity CAMP-specific 3',5'-cyclic
phosphodiesterase 7A; PDE, hydrolase; HET: IBM; 1.67A
{Homo sapiens} PDB: 3g3n_A*
Length = 353
Score = 92.9 bits (231), Expect = 1e-24
Identities = 41/92 (44%), Positives = 61/92 (66%), Gaps = 13/92 (14%)
Query: 1 MEHFNLDVVRVWKLFSLIEEGYHGTNPYHNSIHATD-------------IKRHLTHLEIM 47
+E+F+LD++++ + +I+E YH NPYHN++HA D + +T +I+
Sbjct: 55 IEYFHLDMMKLRRFLVMIQEDYHSQNPYHNAVHAADVTQAMHCYLKEPKLANSVTPWDIL 114
Query: 48 ASLLAAVAHDLDHPGVNQPFLIATSNHLAALY 79
SL+AA HDLDHPGVNQPFLI T+++LA LY
Sbjct: 115 LSLIAAATHDLDHPGVNQPFLIKTNHYLATLY 146
>3qi3_A High affinity CGMP-specific 3',5'-cyclic phosphod 9A; mutation,
glutamine switch, hydrolase-hydrolase inhibitor CO; HET:
PDB; 2.30A {Homo sapiens} PDB: 3qi4_A*
Length = 533
Score = 90.1 bits (223), Expect = 3e-23
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 14/92 (15%)
Query: 1 MEHFNLDVVRVWKLFSLIEEGYHGTNPYHNSIHATD-------------IKRHLTHLEIM 47
+ F+++ V + + + + Y NP+HN H ++ + +I+
Sbjct: 225 VRDFSINPVTLRRWLFCVHDNYR-NNPFHNFRHCFCVAQMMYSMVWLCSLQEKFSQTDIL 283
Query: 48 ASLLAAVAHDLDHPGVNQPFLIATSNHLAALY 79
+ AA+ HDLDHPG N + I LA Y
Sbjct: 284 ILMTAAICHDLDHPGYNNTYQINARTELAVRY 315
>3itu_A CGMP-dependent 3',5'-cyclic phosphodiesterase; Zn-binding,
all-alpha-helical, alternative splicing, hydrolase,
membrane, polymorphism; HET: IBM; 1.58A {Homo sapiens}
PDB: 3itm_A* 1z1l_A
Length = 345
Score = 89.1 bits (221), Expect = 3e-23
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 14/92 (15%)
Query: 1 MEHFNLDVVRVWKLFSLIEEGYHGTNPYHNSIHATD-------------IKRHLTHLEIM 47
+ ++ +D + + ++++GY PYHN +HA + +L +EI
Sbjct: 55 INNYKIDCPTLARFCLMVKKGYR-DPPYHNWMHAFSVSHFCYLLYKNLELTNYLEDIEIF 113
Query: 48 ASLLAAVAHDLDHPGVNQPFLIATSNHLAALY 79
A ++ + HDLDH G N F +A+ + LAALY
Sbjct: 114 ALFISCMCHDLDHRGTNNSFQVASKSVLAALY 145
>2r8q_A Class I phosphodiesterase PDEB1; leishimaniasis, parasite inhibitor
selectivity, CAMP phosphodiesterase, hydrolase; HET:
IBM; 1.50A {Leishmania major}
Length = 359
Score = 88.4 bits (219), Expect = 7e-23
Identities = 27/93 (29%), Positives = 32/93 (34%), Gaps = 14/93 (15%)
Query: 1 MEHFNLDVVRVWKLFSLIEEGYHGTNPYHNSIHATD-------------IKRHLTHLEIM 47
E F + Y PYHN H D LT LE
Sbjct: 73 PEKFGCREQTLLNFILQCRRRYR-RVPYHNFYHVVDVCQTLHTYLYTGKASELLTELECY 131
Query: 48 ASLLAAVAHDLDHPGVNQPFLIATSNHLAALYE 80
L+ A+ HDLDH GVN F + T + L L
Sbjct: 132 VLLVTALVHDLDHMGVNNSFYLKTDSPLGILSS 164
>3dyn_A High affinity CGMP-specific 3',5'-cyclic phosphod 9A;
phophodiestrase, enzyme mechanism, hydrolase, manganes
binding, phosphoprotein; HET: PCG IBM; 2.10A {Homo
sapiens} SCOP: a.211.1.2 PDB: 3dyl_A* 3dy8_A* 3dyq_A*
3dys_A* 3jsi_A* 3jsw_A* 2yy2_A* 2hd1_A* 3k3e_A* 3k3h_A*
3n3z_A*
Length = 329
Score = 88.0 bits (218), Expect = 7e-23
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 14/92 (15%)
Query: 1 MEHFNLDVVRVWKLFSLIEEGYHGTNPYHNSIHATD-------------IKRHLTHLEIM 47
+ F+++ V + + + + Y NP+HN H ++ + +I+
Sbjct: 48 VRDFSINPVTLRRWLFCVHDNYR-NNPFHNFRHCFCVAQMMYSMVWLCSLQEKFSQTDIL 106
Query: 48 ASLLAAVAHDLDHPGVNQPFLIATSNHLAALY 79
+ AA+ HDLDHPG N + I LA Y
Sbjct: 107 ILMTAAICHDLDHPGYNNTYQINARTELAVRY 138
>1taz_A Calcium/calmodulin-dependent 3',5'-cyclic nucleot phosphodiesterase
1B; PDE1B, hydrolase; HET: CME; 1.77A {Homo sapiens}
SCOP: a.211.1.2
Length = 365
Score = 87.6 bits (217), Expect = 1e-22
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 14/93 (15%)
Query: 1 MEHFNLDVVRVWKLFSLIEEGYH-GTNPYHNSIHATD-------------IKRHLTHLEI 46
+ F + V + +E GY NPYHN IHA D + L+ +E+
Sbjct: 53 ISRFKIPTVFLMSFLDALETGYGKYKNPYHNQIHAADVTQTVHCFLLRTGMVHCLSEIEL 112
Query: 47 MASLLAAVAHDLDHPGVNQPFLIATSNHLAALY 79
+A + AA HD +H G F I T + A +Y
Sbjct: 113 LAIIFAAAIHDYEHTGTTNSFHIQTKSECAIVY 145
>3v93_A Cyclic nucleotide specific phosphodiesterase; parasite,
phosphodiesterases,, hydrolase; 2.00A {Trypanosoma
cruzi} PDB: 3v94_A*
Length = 345
Score = 85.2 bits (211), Expect = 8e-22
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 14/91 (15%)
Query: 3 HFNLDVVRVWKLFSLIEEGYHGTNPYHNSIHATD--------------IKRHLTHLEIMA 48
+ + + W E + NPYHN+IHA D + HLT LE A
Sbjct: 73 FASQEEAQKWAFLVAAVENNYRPNPYHNAIHAADVLQGTFSLVSAAKPLMEHLTPLECKA 132
Query: 49 SLLAAVAHDLDHPGVNQPFLIATSNHLAALY 79
+ AA+ HD+ HPG FL A + ++ +
Sbjct: 133 AAFAALTHDVCHPGRTNAFLAAVQDPVSFKF 163
Score = 24.0 bits (52), Expect = 6.2
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 30 NSIHATDIKRHLTHLEIMASLLAAVAHDLDHP 61
+ I TD+ H + + L+A D
Sbjct: 206 HLIGHTDMSLHSETVAKHGAKLSAGGFDCTCK 237
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle
dysfunction, inhibitor design, allosteric enzyme,
alternative splicing, CGMP binding; HET: WAN; 2.00A
{Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A
2k31_A*
Length = 878
Score = 85.2 bits (210), Expect = 2e-21
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 13/92 (14%)
Query: 1 MEHFNLDVVRVWKLFSLIEEGYHGTNPYHNSIHATD-------------IKRHLTHLEIM 47
+++F + + + +++ Y YHN HA + I+ LT LEI+
Sbjct: 588 VQNFQMKHEVLCRWILSVKKNYRKNVAYHNWRHAFNTAQCMFAALKAGKIQNKLTDLEIL 647
Query: 48 ASLLAAVAHDLDHPGVNQPFLIATSNHLAALY 79
A L+AA++HDLDH GVN ++ + + LA LY
Sbjct: 648 ALLIAALSHDLDHRGVNNSYIQRSEHPLAQLY 679
Score = 24.4 bits (52), Expect = 6.1
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 30 NSIHATDIKRHLTHLEIMASLLAAVAHDLDHP 61
+I ATD+ ++ L+ +L+ P
Sbjct: 721 QAILATDLALYIKRRGEFFELIRKNQFNLEDP 752
>2our_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A;
PDE10, substrate specificity, hydrolase; HET: CMP; 1.45A
{Homo sapiens} PDB: 2ous_A 2ouu_A* 3sn7_A* 3sni_A*
3snl_A* 4dff_A* 2wey_A* 2oun_A* 2oup_A 2ouq_A* 2ouv_A
2ouy_A* 4ael_A* 2y0j_A* 4ddl_A* 3uuo_A* 3ui7_A* 2o8h_A*
2ovv_A* 2ovy_A* ...
Length = 331
Score = 82.5 bits (204), Expect = 7e-21
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 12/89 (13%)
Query: 2 EHFNLDVVRVWKLFSLIEEGYHGTNPYHNSIHATDI-----------KRHLTHLEIMASL 50
++ ++ + +++ Y PYHN HA + T LE L
Sbjct: 54 GTSCFELEKLCRFIMSVKKNYR-RVPYHNWKHAVTVAHCMYAILQNNHTLFTDLERKGLL 112
Query: 51 LAAVAHDLDHPGVNQPFLIATSNHLAALY 79
+A + HDLDH G + +L + LAALY
Sbjct: 113 IACLCHDLDHRGFSNSYLQKFDHPLAALY 141
>3hr1_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A;
PDE 10A, PDE10 inhibitors, allosteric enzyme,
alternative splicing; HET: PF9; 1.53A {Rattus
norvegicus} PDB: 3hqy_A* 3hqz_A* 3hqw_A*
Length = 380
Score = 79.9 bits (197), Expect = 9e-20
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 14/90 (15%)
Query: 1 MEHFNLDVVRVWKLFSLIEEGYHGTNPYHNSIHATDI-----------KRHLTHLEIMAS 49
F L+ + + +++ Y PYHN HA + T LE
Sbjct: 86 TSCFELEKLCRF--IMSVKKNYR-RVPYHNWKHAVTVAHCMYAILQNNNGLFTDLERKGL 142
Query: 50 LLAAVAHDLDHPGVNQPFLIATSNHLAALY 79
L+A + HDLDH G + +L + LAALY
Sbjct: 143 LIACLCHDLDHRGFSNSYLQKFDHPLAALY 172
Score = 23.7 bits (51), Expect = 9.8
Identities = 5/33 (15%), Positives = 15/33 (45%)
Query: 29 HNSIHATDIKRHLTHLEIMASLLAAVAHDLDHP 61
+I ATD+ + + + + + + +L +
Sbjct: 213 RKAIIATDLALYFGNRKQLEEMYQTGSLNLHNQ 245
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains,
allosteric regulation hydrolase, membrane; 3.02A {Homo
sapiens}
Length = 691
Score = 72.8 bits (178), Expect = 4e-17
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 14/92 (15%)
Query: 1 MEHFNLDVVRVWKLFSLIEEGYHGTNPYHNSIHATD-------------IKRHLTHLEIM 47
+ ++ +D + + ++++GY PYHN +HA + +L +EI
Sbjct: 416 INNYKIDCPTLARFCLMVKKGYR-DPPYHNWMHAFSVSHFCYLLYKNLELTNYLEDIEIF 474
Query: 48 ASLLAAVAHDLDHPGVNQPFLIATSNHLAALY 79
A ++ + HDLDH G N F +A+ + LAALY
Sbjct: 475 ALFISCMCHDLDHRGTNNSFQVASKSVLAALY 506
>1so2_A CGMP-inhibited 3',5'-cyclic phosphodiesterase B; PDE3B
phosphodiesterase, hydrolase; HET: HG9 666; 2.40A {Homo
sapiens} SCOP: a.211.1.2 PDB: 1soj_A*
Length = 420
Score = 58.9 bits (142), Expect = 3e-12
Identities = 19/58 (32%), Positives = 28/58 (48%)
Query: 22 YHGTNPYHNSIHATDIKRHLTHLEIMASLLAAVAHDLDHPGVNQPFLIATSNHLAALY 79
+ + + ++ LE+MA +AA HD DHPG FL+AT+ A LY
Sbjct: 134 ISSKSCSNPDESYGCLSSNIPALELMALYVAAAMHDYDHPGRTNAFLVATNAPQAVLY 191
Score = 38.1 bits (88), Expect = 7e-05
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 1 MEHFNLDVVRVWKLFSLIEEGYHGTNPYHNSIHATDIKRHLTHL 44
+E F + + F +E GY PYHN IHATD+ + +L
Sbjct: 57 LEIFKIPTQQFMNYFRALENGYR-DIPYHNRIHATDVLHAVWYL 99
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.6 bits (58), Expect = 1.1
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 58 LDHPGVNQPFLIATSNHLAA 77
L H + L+ T++ A
Sbjct: 11 LSHGSLEHVLLVPTASFFIA 30
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling
protein, osmoregulation, OMPR, OMPC; 1.25A
{Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B
2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A
2y0q_A
Length = 115
Score = 25.8 bits (57), Expect = 1.3
Identities = 6/25 (24%), Positives = 12/25 (48%), Gaps = 3/25 (12%)
Query: 34 ATDIKRHLTHLEIMASLLAAVAHDL 58
+K+ ++ +A V+HDL
Sbjct: 50 RRSLKQLADDRTLL---MAGVSHDL 71
>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori
aliphatic amidase, hydrolase; 1.75A {Helicobacter
pylori} PDB: 2dyv_A 2e2l_A 2e2k_A
Length = 334
Score = 23.9 bits (52), Expect = 6.8
Identities = 5/22 (22%), Positives = 12/22 (54%)
Query: 10 RVWKLFSLIEEGYHGTNPYHNS 31
+V+ +FS++E +N+
Sbjct: 96 KVYGVFSIMERNPDSNKNPYNT 117
>1ijt_A FGF4, fibroblast growth factor 4; B-trefoil fold, hormone/growth
factor complex; 1.80A {Homo sapiens} SCOP: b.42.1.1
Length = 128
Score = 23.5 bits (50), Expect = 8.4
Identities = 8/48 (16%), Positives = 17/48 (35%)
Query: 8 VVRVWKLFSLIEEGYHGTNPYHNSIHATDIKRHLTHLEIMASLLAAVA 55
+ R+ +L+ + G+H I + LE+ V+
Sbjct: 2 IKRLRRLYCNVGIGFHLQALPDGRIGGAHADTRDSLLELSPVERGVVS 49
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.136 0.419
Gapped
Lambda K H
0.267 0.0704 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,293,193
Number of extensions: 63566
Number of successful extensions: 144
Number of sequences better than 10.0: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 37
Length of query: 80
Length of database: 6,701,793
Length adjustment: 49
Effective length of query: 31
Effective length of database: 5,333,664
Effective search space: 165343584
Effective search space used: 165343584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.5 bits)