RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17172
         (80 letters)



>d1tbfa_ a.211.1.2 (A:) cGMP-specific 3',5'-cyclic phosphodiesterase
           pde5a1-Ibmx {Human (Homo sapiens) [TaxId: 9606]}
          Length = 326

 Score = 76.6 bits (188), Expect = 3e-19
 Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 13/92 (14%)

Query: 1   MEHFNLDVVRVWKLFSLIEEGYHGTNPYHNSIHATD-------------IKRHLTHLEIM 47
           +++F +    + +    +++ Y     YHN  HA +             I+  LT LEI+
Sbjct: 52  VQNFQMKHEVLCRWILSVKKNYRKNVAYHNWRHAFNTAQCMFAALKAGKIQNKLTDLEIL 111

Query: 48  ASLLAAVAHDLDHPGVNQPFLIATSNHLAALY 79
           A L+AA++HDLDHPGV+  FLI T++ LA +Y
Sbjct: 112 ALLIAALSHDLDHPGVSNQFLINTNSELALMY 143


>d1y2ka1 a.211.1.2 (A:86-411) Catalytic domain of cyclic nucleotide
           phosphodiesterase pde4d {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 326

 Score = 69.3 bits (169), Expect = 2e-16
 Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 13/92 (14%)

Query: 1   MEHFNLDVVRVWKLFSLIEEGYHGTNPYHNSIHATD-------------IKRHLTHLEIM 47
           ++ F + V  +      +E+ YH    YHN+IHA D             ++   T LEI+
Sbjct: 47  LKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDLEIL 106

Query: 48  ASLLAAVAHDLDHPGVNQPFLIATSNHLAALY 79
           A++ A+  HD+DHPGV+  FLI T++ LA +Y
Sbjct: 107 AAIFASAIHDVDHPGVSNQFLINTNSELALMY 138


>d3dy8a1 a.211.1.2 (A:182-505) High-affinity cGMP-specific
           3',5'-cyclic phosphodiesterase 9A, PDE9A {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 324

 Score = 68.5 bits (167), Expect = 4e-16
 Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 14/92 (15%)

Query: 1   MEHFNLDVVRVWKLFSLIEEGYHGTNPYHNSIHATD-------------IKRHLTHLEIM 47
           +  F+++ V + +    + + Y   NP+HN  H                ++   +  +I+
Sbjct: 44  VRDFSINPVTLRRWLFCVHDNYRN-NPFHNFRHCFCVAQMMYSMVWLCSLQEKFSQTDIL 102

Query: 48  ASLLAAVAHDLDHPGVNQPFLIATSNHLAALY 79
             + AA+ HDLDHPG N  + I     LA  Y
Sbjct: 103 ILMTAAICHDLDHPGYNNTYQINARTELAVRY 134


>d1taza_ a.211.1.2 (A:) Catalytic domain of cyclic nucleotide
           phosphodiesterase 1b, PDE1B {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 357

 Score = 67.0 bits (163), Expect = 2e-15
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 14/93 (15%)

Query: 1   MEHFNLDVVRVWKLFSLIEEGYH-GTNPYHNSIHATDI-------------KRHLTHLEI 46
           +  F +  V +      +E GY    NPYHN IHA D+                L+ +E+
Sbjct: 49  ISRFKIPTVFLMSFLDALETGYGKYKNPYHNQIHAADVTQTVHCFLLRTGMVHCLSEIEL 108

Query: 47  MASLLAAVAHDLDHPGVNQPFLIATSNHLAALY 79
           +A + AA  HD +H G    F I T +  A +Y
Sbjct: 109 LAIIFAAAIHDYEHTGTTNSFHIQTKSECAIVY 141


>d1so2a_ a.211.1.2 (A:) cGMP-inhibited 3',5'-cyclic
           phosphodiesterase B, pde3b {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 415

 Score = 53.2 bits (127), Expect = 1e-10
 Identities = 19/57 (33%), Positives = 28/57 (49%)

Query: 23  HGTNPYHNSIHATDIKRHLTHLEIMASLLAAVAHDLDHPGVNQPFLIATSNHLAALY 79
              +  +       +  ++  LE+MA  +AA  HD DHPG    FL+AT+   A LY
Sbjct: 130 SSKSCSNPDESYGCLSSNIPALELMALYVAAAMHDYDHPGRTNAFLVATNAPQAVLY 186



 Score = 40.1 bits (93), Expect = 5e-06
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 1  MEHFNLDVVRVWKLFSLIEEGYHGTNPYHNSIHATD 36
          +E F +   +    F  +E GY    PYHN IHATD
Sbjct: 52 LEIFKIPTQQFMNYFRALENGYRD-IPYHNRIHATD 86


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.136    0.419 

Gapped
Lambda     K      H
   0.267   0.0552    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 307,410
Number of extensions: 11331
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 7
Length of query: 80
Length of database: 2,407,596
Length adjustment: 46
Effective length of query: 34
Effective length of database: 1,776,016
Effective search space: 60384544
Effective search space used: 60384544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.3 bits)