BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17173
(1108 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KSY|A Chain A, Crystal Structure Of The Histone Domain, Dh-Ph Unit, And
Catalytic Unit Of The Ras Activator Son Of Sevenless
(Sos)
Length = 1049
Score = 823 bits (2127), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/1051 (43%), Positives = 659/1051 (62%), Gaps = 33/1051 (3%)
Query: 18 DFHEAYNENRWKGTLVSSLHSILKQVHNSLDINTDALYYTEXXXXXXXXXXXXXXXXXTT 77
+F N +W+G LV +L + QVH +L+ N DAL Y E +
Sbjct: 9 EFFSEENAPKWRGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNMLCQAQPR-SA 67
Query: 78 SDMEGKIKKYFPNPISEWTFNEAKQALEKGKKKSSLVISIDRVQNILQKEFYFRKVETNM 137
SD+E +++K FP+PI +W +A+ A+EK K+++ L + ++++ +L KE K++ +
Sbjct: 68 SDVEERVQKSFPHPIDKWAIADAQSAIEKRKRRNPLSLPVEKIHPLL-KEVLGYKIDHQV 126
Query: 138 XXXXXXXXXXXXXXXXKLVGNYVKNIRKVDISIQDIDVAMYADKALLELFFQ--EDDDPV 195
KLVGNYV+NIR +I+ QDI VAM ADK L+++F Q ED + +
Sbjct: 127 SVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCADKVLMDMFHQDVEDINIL 186
Query: 196 YLEPQVQSNNVVLHYEQVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLF 255
L + S + Y +V F+AE + +IREL LI+K+F E + L +V ++F
Sbjct: 187 SLTDEEPSTSGEQTYYDLVKAFMAEIRQYIRELNLIIKVFREPFVSNSKLFSANDVENIF 246
Query: 256 EIIEEIYNLTVCLLGAVEDISEMSSDDH---CIGSCXXXXXXXXXXXVYEKLLHNIVNQK 312
I +I+ L+V LLG +ED EM+ + +GSC YE +I+
Sbjct: 247 SRIVDIHELSVKLLGHIEDTVEMTDEGSPHPLVGSCFEDLAEELAFDPYESYARDILRPG 306
Query: 313 SIEVLSMHVTQPSILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYIKIFHSLTDS 372
+ +++P LQ G GFKE V+Y LP LL++P+YHC YFE +K ++
Sbjct: 307 FHDRFLSQLSKPGAALYLQSIGEGFKEAVQYVLPRLLLAPVYHCLHYFELLKQLEEKSED 366
Query: 373 SKDKECLEQAQGLLAPLQISLSKI---SLEKN--GKNACVRNYNRVKHLQ-SLEKIHELK 426
+DKECL+QA L +Q + KI SL K ++AC ++K Q +++K++E++
Sbjct: 367 QEDKECLKQAITALLNVQSGMEKICSKSLAKRRLSESACRFYSQQMKGKQLAIKKMNEIQ 426
Query: 427 KNVDGVDVRDLRPYLEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVP 486
KN+DG + +D+ EF E TL + K ER ++ FDG++I CKSN P
Sbjct: 427 KNIDGWEGKDIGQCCNEFIMEGTLTRVGAKH----ERHIFLFDGLMICCKSNH----GQP 478
Query: 487 INVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWF 546
+S E++ KE +F+RKV+IND ++T++ K+AFEI +D+ S+I KS E+K +W
Sbjct: 479 RLPGASNAEYRLKEKFFMRKVQINDKDDTNEYKHAFEIILKDENSVIFSAKSAEEKNNWM 538
Query: 547 SDLIMVNTKSMLERTLDSIILDEEKKHPLRMPSPEYYSFAEPDSCENIILEE--KQNTNM 604
+ LI + +S LER LD +L EEK+ +R+PS + Y FAEPDS ENII EE + +
Sbjct: 539 AALISLQYRSTLERMLDVTMLQEEKEEQMRLPSADVYRFAEPDSEENIIFEENMQPKAGI 598
Query: 605 PLIKGATLHKLIERLTYHIYADPAFIGTFLTTYRSFTTPTELLDLLIDRFNVPDPNKVFE 664
P+IK T+ KLIERLTYH+YADP F+ TFLTTYRSF P ELL L+I+RF +P+P E
Sbjct: 599 PIIKAGTVIKLIERLTYHMYADPNFVRTFLTTYRSFCKPQELLSLIIERFEIPEPEPT-E 657
Query: 665 NNNADIE--ESILREDIIRYKKELCQPVQFRVLNVFRQWVQHHFYDFQRDQNLLEKLKSF 722
+ IE + L ++ R++KE QPVQ RVLNV R WV+HHFYDF+RD LL++++ F
Sbjct: 658 ADRIAIENGDQPLSAELKRFRKEYIQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEF 717
Query: 723 LLNEISGKSLRKWADIVLNLIQRKEL--DLEKEITFAFNNSPPPIEVHVPI-NSIDEFNI 779
+ + GK+++KW + + +IQRK++ D F +SPP +E H+ I+ F++
Sbjct: 718 I-GTVRGKAMKKWVESITKIIQRKKIARDNGPGHNITFQSSPPTVEWHISRPGHIETFDL 776
Query: 780 LIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHTTNFTRWLE 839
L HP+EIARQLTLLE D +R+V+PSELVGSVWTK++K SPNL+K+++HTTN T W E
Sbjct: 777 LTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFE 836
Query: 840 KIIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTR 899
K IVE EN +ER+A+++RIIE++ V Q+LNNFNGVL V SAM S+ VYRL TF+ +P+R
Sbjct: 837 KCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSR 896
Query: 900 LQKVLEDARELNGDHFKKYQEKLRNINPPCIPFFGMYLTNILHIEEGNPDFLP--DSKLI 957
+K+LE+A EL+ DH+KKY KLR+INPPC+PFFG+YLTNIL EEGNP+ L +LI
Sbjct: 897 QKKILEEAHELSEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELI 956
Query: 958 NFTKRRKVAEIISEIQQYQNEPYCLSVVPIYREFFENLSPFEGIDDNEMCNILFEQSLLI 1017
NF+KRRKVAEI EIQQYQN+PYCL V + FFENL+P + E + LF +SL I
Sbjct: 957 NFSKRRKVAEITGEIQQYQNQPYCLRVESDIKRFFENLNPMGNSMEKEFTDYLFNKSLEI 1016
Query: 1018 EPRHATHVPKFPRKWPNISLKSPLVKIKKTR 1048
EPR+ +P+FP+K+ + LKSP V+ R
Sbjct: 1017 EPRNPKPLPRFPKKY-SYPLKSPGVRPSNPR 1046
>pdb|1XD4|A Chain A, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of
Sevenless (Sos)
pdb|1XD4|B Chain B, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of
Sevenless (Sos)
Length = 852
Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/857 (46%), Positives = 557/857 (64%), Gaps = 29/857 (3%)
Query: 210 YEQVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCLL 269
Y +V F+AE + +IREL LI+K+F E + L +V ++F I +I+ L+V LL
Sbjct: 4 YYDLVKAFMAEIRQYIRELNLIIKVFREPFVSNSKLFSANDVENIFSRIVDIHELSVKLL 63
Query: 270 GAVEDISEMSSDDH---CIGSCXXXXXXXXXXXVYEKLLHNIVNQKSIEVLSMHVTQPSI 326
G +ED EM+ + +GSC YE +I+ + +++P
Sbjct: 64 GHIEDTVEMTDEGSPHPLVGSCFEDLAEELAFDPYESYARDILRPGFHDRFLSQLSKPGA 123
Query: 327 LNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYIKIFHSLTDSSKDKECLEQAQGLL 386
LQ G GFKE V+Y LP LL++P+YHC YFE +K ++ +DKECL+QA L
Sbjct: 124 ALYLQSIGEGFKEAVQYVLPRLLLAPVYHCLHYFELLKQLEEKSEDQEDKECLKQAITAL 183
Query: 387 APLQISLSKI---SLEKN--GKNACVRNYNRVKHLQ-SLEKIHELKKNVDGVDVRDLRPY 440
+Q + KI SL K ++AC ++K Q +++K++E++KN+DG + +D+
Sbjct: 184 LNVQSGMEKICSKSLAKRRLSESACRFYSQQMKGKQLAIKKMNEIQKNIDGWEGKDIGQC 243
Query: 441 LEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKE 500
EF E TL + K ER ++ FDG++I CKSN P +S E++ KE
Sbjct: 244 CNEFIMEGTLTRVGAKH----ERHIFLFDGLMICCKSNH----GQPRLPGASNAEYRLKE 295
Query: 501 MYFLRKVEINDYENTDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVNTKSMLER 560
+F+RKV+IND ++T++ K+AFEI +D+ S+I KS E+K +W + LI + +S LER
Sbjct: 296 KFFMRKVQINDKDDTNEYKHAFEIILKDENSVIFSAKSAEEKNNWMAALISLQYRSTLER 355
Query: 561 TLDSIILDEEKKHPLRMPSPEYYSFAEPDSCENIILEE--KQNTNMPLIKGATLHKLIER 618
LD +L EEK+ +R+PS + Y FAEPDS ENII EE + +P+IK T+ KLIER
Sbjct: 356 MLDVTMLQEEKEEQMRLPSADVYRFAEPDSEENIIFEENMQPKAGIPIIKAGTVIKLIER 415
Query: 619 LTYHIYADPAFIGTFLTTYRSFTTPTELLDLLIDRFNVPDPNKVFENNNADIE--ESILR 676
LTYH+YADP F+ TFLTTYRSF P ELL L+I+RF +P+P E + IE + L
Sbjct: 416 LTYHMYADPNFVRTFLTTYRSFCKPQELLSLIIERFEIPEPEPT-EADRIAIENGDQPLS 474
Query: 677 EDIIRYKKELCQPVQFRVLNVFRQWVQHHFYDFQRDQNLLEKLKSFLLNEISGKSLRKWA 736
++ R++KE QPVQ RVLNV R WV+HHFYDF+RD LL++++ F+ + GK+++KW
Sbjct: 475 AELKRFRKEYIQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFI-GTVRGKAMKKWV 533
Query: 737 DIVLNLIQRKEL--DLEKEITFAFNNSPPPIEVHVPI-NSIDEFNILIAHPVEIARQLTL 793
+ + +IQRK++ D F +SPP +E H+ I+ F++L HP+EIARQLTL
Sbjct: 534 ESITKIIQRKKIARDNGPGHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTL 593
Query: 794 LEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHTTNFTRWLEKIIVEAENFDERLA 853
LE D +R+V+PSELVGSVWTK++K SPNL+K+++HTTN T W EK IVE EN +ER+A
Sbjct: 594 LESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVA 653
Query: 854 IMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDARELNGD 913
+++RIIE++ V Q+LNNFNGVL V SAM S+ VYRL TF+ +P+R +K+LE+A EL+ D
Sbjct: 654 VVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSED 713
Query: 914 HFKKYQEKLRNINPPCIPFFGMYLTNILHIEEGNPDFLP--DSKLINFTKRRKVAEIISE 971
H+KKY KLR+INPPC+PFFG+YLTNIL EEGNP+ L +LINF+KRRKVAEI E
Sbjct: 714 HYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGE 773
Query: 972 IQQYQNEPYCLSVVPIYREFFENLSPFEGIDDNEMCNILFEQSLLIEPRHATHVPKFPRK 1031
IQQYQN+PYCL V + FFENL+P + E + LF +SL IEPR+ +P+FP+K
Sbjct: 774 IQQYQNQPYCLRVESDIKRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRNPKPLPRFPKK 833
Query: 1032 WPNISLKSPLVKIKKTR 1048
+ + LKSP V+ R
Sbjct: 834 Y-SYPLKSPGVRPSNPR 849
>pdb|1XDV|A Chain A, Experimentally Phased Structure Of Human The Son Of
Sevenless Protein At 4.1 Ang.
pdb|1XDV|B Chain B, Experimentally Phased Structure Of Human The Son Of
Sevenless Protein At 4.1 Ang
Length = 847
Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/852 (46%), Positives = 556/852 (65%), Gaps = 29/852 (3%)
Query: 210 YEQVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCLL 269
Y +V F+AE + +IREL LI+K+F E + L +V ++F I +I+ L+V LL
Sbjct: 4 YYDLVKAFMAEIRQYIRELNLIIKVFREPFVSNSKLFSANDVENIFSRIVDIHELSVKLL 63
Query: 270 GAVEDISEMSSDDH---CIGSCXXXXXXXXXXXVYEKLLHNIVNQKSIEVLSMHVTQPSI 326
G +ED EM+ + +GSC YE +I+ + +++P
Sbjct: 64 GHIEDTVEMTDEGSPHPLVGSCFEDLAEELAFDPYESYARDILRPGFHDRFLSQLSKPGA 123
Query: 327 LNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYIKIFHSLTDSSKDKECLEQAQGLL 386
LQ G GFKE V+Y LP LL++P+YHC YFE +K ++ +DKECL+QA L
Sbjct: 124 ALYLQSIGEGFKEAVQYVLPRLLLAPVYHCLHYFELLKQLEEKSEDQEDKECLKQAITAL 183
Query: 387 APLQISLSKI---SLEKN--GKNACVRNYNRVKHLQ-SLEKIHELKKNVDGVDVRDLRPY 440
+Q + KI SL K ++AC ++K Q +++K++E++KN+DG + +D+
Sbjct: 184 LNVQSGMEKICSKSLAKRRLSESACRFYSQQMKGKQLAIKKMNEIQKNIDGWEGKDIGQC 243
Query: 441 LEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKE 500
EF E TL + K ER ++ FDG++I CKSN P +S E++ KE
Sbjct: 244 CNEFIMEGTLTRVGAKH----ERHIFLFDGLMICCKSNH----GQPRLPGASNAEYRLKE 295
Query: 501 MYFLRKVEINDYENTDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVNTKSMLER 560
+F+RKV+IND ++T++ K+AFEI +D+ S+I KS E+K +W + LI + +S LER
Sbjct: 296 KFFMRKVQINDKDDTNEYKHAFEIILKDENSVIFSAKSAEEKNNWMAALISLQYRSTLER 355
Query: 561 TLDSIILDEEKKHPLRMPSPEYYSFAEPDSCENIILEE--KQNTNMPLIKGATLHKLIER 618
LD +L EEK+ +R+PS + Y FAEPDS ENII EE + +P+IK T+ KLIER
Sbjct: 356 MLDVTMLQEEKEEQMRLPSADVYRFAEPDSEENIIFEENMQPKAGIPIIKAGTVIKLIER 415
Query: 619 LTYHIYADPAFIGTFLTTYRSFTTPTELLDLLIDRFNVPDPNKVFENNNADIE--ESILR 676
LTYH+YADP F+ TFLTTYRSF P ELL L+I+RF +P+P E + IE + L
Sbjct: 416 LTYHMYADPNFVRTFLTTYRSFCKPQELLSLIIERFEIPEPEPT-EADRIAIENGDQPLS 474
Query: 677 EDIIRYKKELCQPVQFRVLNVFRQWVQHHFYDFQRDQNLLEKLKSFLLNEISGKSLRKWA 736
++ R++KE QPVQ RVLNV R WV+HHFYDF+RD LL++++ F+ + GK+++KW
Sbjct: 475 AELKRFRKEYIQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFI-GTVRGKAMKKWV 533
Query: 737 DIVLNLIQRKEL--DLEKEITFAFNNSPPPIEVHVPI-NSIDEFNILIAHPVEIARQLTL 793
+ + +IQRK++ D F +SPP +E H+ I+ F++L HP+EIARQLTL
Sbjct: 534 ESITKIIQRKKIARDNGPGHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTL 593
Query: 794 LEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHTTNFTRWLEKIIVEAENFDERLA 853
LE D +R+V+PSELVGSVWTK++K SPNL+K+++HTTN T W EK IVE EN +ER+A
Sbjct: 594 LESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVA 653
Query: 854 IMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDARELNGD 913
+++RIIE++ V Q+LNNFNGVL V SAM S+ VYRL TF+ +P+R +K+LE+A EL+ D
Sbjct: 654 VVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSED 713
Query: 914 HFKKYQEKLRNINPPCIPFFGMYLTNILHIEEGNPDFLP--DSKLINFTKRRKVAEIISE 971
H+KKY KLR+INPPC+PFFG+YLTNIL EEGNP+ L +LINF+KRRKVAEI E
Sbjct: 714 HYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGE 773
Query: 972 IQQYQNEPYCLSVVPIYREFFENLSPFEGIDDNEMCNILFEQSLLIEPRHATHVPKFPRK 1031
IQQYQN+PYCL V + FFENL+P + E + LF +SL IEPR+ +P+FP+K
Sbjct: 774 IQQYQNQPYCLRVESDIKRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRNPKPLPRFPKK 833
Query: 1032 WPNISLKSPLVK 1043
+ + LKSP V+
Sbjct: 834 Y-SYPLKSPGVR 844
>pdb|2II0|A Chain A, Crystal Structure Of Catalytic Domain Of Son Of Sevenless
(Rem-Cdc25) In The Absence Of Ras
Length = 490
Score = 511 bits (1317), Expect = e-145, Method: Compositional matrix adjust.
Identities = 260/483 (53%), Positives = 347/483 (71%), Gaps = 12/483 (2%)
Query: 575 LRMPSPEYYSFAEPDSCENIILEE--KQNTNMPLIKGATLHKLIERLTYHIYADPAFIGT 632
+R+PS + Y FAEPDS ENII EE + +P+IK T+ KLIERLTYH+YADP F+ T
Sbjct: 8 MRLPSADVYRFAEPDSEENIIFEENMQPKAGIPIIKAGTVIKLIERLTYHMYADPNFVRT 67
Query: 633 FLTTYRSFTTPTELLDLLIDRFNVPDPNKVFENNNADIE--ESILREDIIRYKKELCQPV 690
FLTTYRSF P ELL L+I+RF +P+P E + IE + L ++ R++KE QPV
Sbjct: 68 FLTTYRSFCKPQELLSLIIERFEIPEPEPT-EADRIAIENGDQPLSAELKRFRKEYIQPV 126
Query: 691 QFRVLNVFRQWVQHHFYDFQRDQNLLEKLKSFLLNEISGKSLRKWADIVLNLIQRKEL-- 748
Q RVLNV R WV+HHFYDF+RD LL++++ F+ + GK+++KW + + +IQRK++
Sbjct: 127 QLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFI-GTVRGKAMKKWVESITKIIQRKKIAR 185
Query: 749 DLEKEITFAFNNSPPPIEVHVP-INSIDEFNILIAHPVEIARQLTLLEFDYFRSVKPSEL 807
D F +SPP +E H+ I+ F++L HP+EIARQLTLLE D +R+V+PSEL
Sbjct: 186 DNGPGHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESDLYRAVQPSEL 245
Query: 808 VGSVWTKKNKAEYSPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQK 867
VGSVWTK++K SPNL+K+++HTTN T W EK IVE EN +ER+A+++RIIE++ V Q+
Sbjct: 246 VGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQE 305
Query: 868 LNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDARELNGDHFKKYQEKLRNINP 927
LNNFNGVL V SAM S+ VYRL TF+ +P+R +K+LE+A EL+ DH+KKY KLR+INP
Sbjct: 306 LNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSEDHYKKYLAKLRSINP 365
Query: 928 PCIPFFGMYLTNILHIEEGNPDFLP--DSKLINFTKRRKVAEIISEIQQYQNEPYCLSVV 985
PC+PFFG+YLTNIL EEGNP+ L +LINF+KRRKVAEI EIQQYQN+PYCL V
Sbjct: 366 PCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQNQPYCLRVE 425
Query: 986 PIYREFFENLSPFEGIDDNEMCNILFEQSLLIEPRHATHVPKFPRKWPNISLKSPLVKIK 1045
+ FFENL+P + E + LF +SL IEPR+ +P+FP+K+ + LKSP V+
Sbjct: 426 SDIKRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRNPKPLPRFPKKY-SYPLKSPGVRPS 484
Query: 1046 KTR 1048
R
Sbjct: 485 NPR 487
>pdb|1NVU|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of The
Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVV|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of The
Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of The
Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVX|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of The
Ras-Specific Nucleotide Exchange Factor Sos
Length = 481
Score = 511 bits (1316), Expect = e-145, Method: Compositional matrix adjust.
Identities = 260/483 (53%), Positives = 347/483 (71%), Gaps = 12/483 (2%)
Query: 575 LRMPSPEYYSFAEPDSCENIILEE--KQNTNMPLIKGATLHKLIERLTYHIYADPAFIGT 632
+R+PS + Y FAEPDS ENII EE + +P+IK T+ KLIERLTYH+YADP F+ T
Sbjct: 2 MRLPSADVYRFAEPDSEENIIFEENMQPKAGIPIIKAGTVIKLIERLTYHMYADPNFVRT 61
Query: 633 FLTTYRSFTTPTELLDLLIDRFNVPDPNKVFENNNADIE--ESILREDIIRYKKELCQPV 690
FLTTYRSF P ELL L+I+RF +P+P E + IE + L ++ R++KE QPV
Sbjct: 62 FLTTYRSFCKPQELLSLIIERFEIPEPEPT-EADRIAIENGDQPLSAELKRFRKEYIQPV 120
Query: 691 QFRVLNVFRQWVQHHFYDFQRDQNLLEKLKSFLLNEISGKSLRKWADIVLNLIQRKEL-- 748
Q RVLNV R WV+HHFYDF+RD LL++++ F+ + GK+++KW + + +IQRK++
Sbjct: 121 QLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFI-GTVRGKAMKKWVESITKIIQRKKIAR 179
Query: 749 DLEKEITFAFNNSPPPIEVHVP-INSIDEFNILIAHPVEIARQLTLLEFDYFRSVKPSEL 807
D F +SPP +E H+ I+ F++L HP+EIARQLTLLE D +R+V+PSEL
Sbjct: 180 DNGPGHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESDLYRAVQPSEL 239
Query: 808 VGSVWTKKNKAEYSPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQK 867
VGSVWTK++K SPNL+K+++HTTN T W EK IVE EN +ER+A+++RIIE++ V Q+
Sbjct: 240 VGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQE 299
Query: 868 LNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDARELNGDHFKKYQEKLRNINP 927
LNNFNGVL V SAM S+ VYRL TF+ +P+R +K+LE+A EL+ DH+KKY KLR+INP
Sbjct: 300 LNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSEDHYKKYLAKLRSINP 359
Query: 928 PCIPFFGMYLTNILHIEEGNPDFLP--DSKLINFTKRRKVAEIISEIQQYQNEPYCLSVV 985
PC+PFFG+YLTNIL EEGNP+ L +LINF+KRRKVAEI EIQQYQN+PYCL V
Sbjct: 360 PCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQNQPYCLRVE 419
Query: 986 PIYREFFENLSPFEGIDDNEMCNILFEQSLLIEPRHATHVPKFPRKWPNISLKSPLVKIK 1045
+ FFENL+P + E + LF +SL IEPR+ +P+FP+K+ + LKSP V+
Sbjct: 420 SDIKRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRNPKPLPRFPKKY-SYPLKSPGVRPS 478
Query: 1046 KTR 1048
R
Sbjct: 479 NPR 481
>pdb|1XD2|C Chain C, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 484
Score = 511 bits (1316), Expect = e-145, Method: Compositional matrix adjust.
Identities = 260/483 (53%), Positives = 347/483 (71%), Gaps = 12/483 (2%)
Query: 575 LRMPSPEYYSFAEPDSCENIILEE--KQNTNMPLIKGATLHKLIERLTYHIYADPAFIGT 632
+R+PS + Y FAEPDS ENII EE + +P+IK T+ KLIERLTYH+YADP F+ T
Sbjct: 2 MRLPSADVYRFAEPDSEENIIFEENMQPKAGIPIIKAGTVIKLIERLTYHMYADPNFVRT 61
Query: 633 FLTTYRSFTTPTELLDLLIDRFNVPDPNKVFENNNADIE--ESILREDIIRYKKELCQPV 690
FLTTYRSF P ELL L+I+RF +P+P E + IE + L ++ R++KE QPV
Sbjct: 62 FLTTYRSFCKPQELLSLIIERFEIPEPEPT-EADRIAIENGDQPLSAELKRFRKEYIQPV 120
Query: 691 QFRVLNVFRQWVQHHFYDFQRDQNLLEKLKSFLLNEISGKSLRKWADIVLNLIQRKEL-- 748
Q RVLNV R WV+HHFYDF+RD LL++++ F+ + GK+++KW + + +IQRK++
Sbjct: 121 QLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFI-GTVRGKAMKKWVESITKIIQRKKIAR 179
Query: 749 DLEKEITFAFNNSPPPIEVHVP-INSIDEFNILIAHPVEIARQLTLLEFDYFRSVKPSEL 807
D F +SPP +E H+ I+ F++L HP+EIARQLTLLE D +R+V+PSEL
Sbjct: 180 DNGPGHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESDLYRAVQPSEL 239
Query: 808 VGSVWTKKNKAEYSPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQK 867
VGSVWTK++K SPNL+K+++HTTN T W EK IVE EN +ER+A+++RIIE++ V Q+
Sbjct: 240 VGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQE 299
Query: 868 LNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDARELNGDHFKKYQEKLRNINP 927
LNNFNGVL V SAM S+ VYRL TF+ +P+R +K+LE+A EL+ DH+KKY KLR+INP
Sbjct: 300 LNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSEDHYKKYLAKLRSINP 359
Query: 928 PCIPFFGMYLTNILHIEEGNPDFLP--DSKLINFTKRRKVAEIISEIQQYQNEPYCLSVV 985
PC+PFFG+YLTNIL EEGNP+ L +LINF+KRRKVAEI EIQQYQN+PYCL V
Sbjct: 360 PCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQNQPYCLRVE 419
Query: 986 PIYREFFENLSPFEGIDDNEMCNILFEQSLLIEPRHATHVPKFPRKWPNISLKSPLVKIK 1045
+ FFENL+P + E + LF +SL IEPR+ +P+FP+K+ + LKSP V+
Sbjct: 420 SDIKRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRNPKPLPRFPKKY-SYPLKSPGVRPS 478
Query: 1046 KTR 1048
R
Sbjct: 479 NPR 481
>pdb|1BKD|S Chain S, Complex Of Human H-Ras With Human Sos-1
Length = 477
Score = 510 bits (1313), Expect = e-144, Method: Compositional matrix adjust.
Identities = 259/477 (54%), Positives = 345/477 (72%), Gaps = 12/477 (2%)
Query: 576 RMPSPEYYSFAEPDSCENIILEE--KQNTNMPLIKGATLHKLIERLTYHIYADPAFIGTF 633
R+PS + Y FAEPDS ENII EE + +P+IK T+ KLIERLTYH+YADP F+ TF
Sbjct: 1 RLPSADVYRFAEPDSEENIIFEENMQPKAGIPIIKAGTVIKLIERLTYHMYADPNFVRTF 60
Query: 634 LTTYRSFTTPTELLDLLIDRFNVPDPNKVFENNNADIE--ESILREDIIRYKKELCQPVQ 691
LTTYRSF P ELL L+I+RF +P+P E + IE + L ++ R++KE QPVQ
Sbjct: 61 LTTYRSFCKPQELLSLIIERFEIPEPEPT-EADRIAIENGDQPLSAELKRFRKEYIQPVQ 119
Query: 692 FRVLNVFRQWVQHHFYDFQRDQNLLEKLKSFLLNEISGKSLRKWADIVLNLIQRKEL--D 749
RVLNV R WV+HHFYDF+RD LL++++ F+ + GK+++KW + + +IQRK++ D
Sbjct: 120 LRVLNVCRHWVEHHFYDFERDAYLLQRMEEFI-GTVRGKAMKKWVESITKIIQRKKIARD 178
Query: 750 LEKEITFAFNNSPPPIEVHVP-INSIDEFNILIAHPVEIARQLTLLEFDYFRSVKPSELV 808
F +SPP +E H+ I+ F++L HP+EIARQLTLLE D +R+V+PSELV
Sbjct: 179 NGPGHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESDLYRAVQPSELV 238
Query: 809 GSVWTKKNKAEYSPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKL 868
GSVWTK++K SPNL+K+++HTTN T W EK IVE EN +ER+A+++RIIE++ V Q+L
Sbjct: 239 GSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQEL 298
Query: 869 NNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDARELNGDHFKKYQEKLRNINPP 928
NNFNGVL V SAM S+ VYRL TF+ +P+R +K+LE+A EL+ DH+KKY KLR+INPP
Sbjct: 299 NNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSEDHYKKYLAKLRSINPP 358
Query: 929 CIPFFGMYLTNILHIEEGNPDFLP--DSKLINFTKRRKVAEIISEIQQYQNEPYCLSVVP 986
C+PFFG+YLTNIL EEGNP+ L +LINF+KRRKVAEI EIQQYQN+PYCL V
Sbjct: 359 CVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQNQPYCLRVES 418
Query: 987 IYREFFENLSPFEGIDDNEMCNILFEQSLLIEPRHATHVPKFPRKWPNISLKSPLVK 1043
+ FFENL+P + E + LF +SL IEPR+ +P+FP+K+ + LKSP V+
Sbjct: 419 DIKRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRNPKPLPRFPKKY-SYPLKSPGVR 474
>pdb|1DBH|A Chain A, Dbl And Pleckstrin Homology Domains From Hsos1
Length = 354
Score = 193 bits (491), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 127/359 (35%), Positives = 194/359 (54%), Gaps = 17/359 (4%)
Query: 210 YEQVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCLL 269
Y +V F AE + +IREL LI+K+F E + L +V ++F I +I+ L+V LL
Sbjct: 4 YYDLVKAFXAEIRQYIRELNLIIKVFREPFVSNSKLFSANDVENIFSRIVDIHELSVKLL 63
Query: 270 GAVEDISEMSSDDH---CIGSCXXXXXXXXXXXVYEKLLHNIVNQKSIEVLSMHVTQPSI 326
G +ED E + + +GSC YE +I+ + +++P
Sbjct: 64 GHIEDTVEXTDEGSPHPLVGSCFEDLAEELAFDPYESYARDILRPGFHDRFLSQLSKPGA 123
Query: 327 LNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYIKIFHSLTDSSKDKECLEQAQGLL 386
LQ G GFKE V+Y LP LL++P+YHC YFE +K ++ +DKECL+QA L
Sbjct: 124 ALYLQSIGEGFKEAVQYVLPRLLLAPVYHCLHYFELLKQLEEKSEDQEDKECLKQAITAL 183
Query: 387 APLQISLSKI---SLEKN--GKNACVRNYNRVKHLQ-SLEKIHELKKNVDGVDVRDLRPY 440
+Q KI SL K ++AC + K Q +++K +E++KN+DG + +D+
Sbjct: 184 LNVQSGXEKICSKSLAKRRLSESACRFYSQQXKGKQLAIKKXNEIQKNIDGWEGKDIGQC 243
Query: 441 LEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKE 500
EF E TL + K ER ++ FDG+ I CKSN P +S E++ KE
Sbjct: 244 CNEFIXEGTLTRVGAKH----ERHIFLFDGLXICCKSNH----GQPRLPGASNAEYRLKE 295
Query: 501 MYFLRKVEINDYENTDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVNTKSMLE 559
+F RKV+IND ++T++ K+AFEI +D+ S+I KS E+K +W + LI + +S LE
Sbjct: 296 KFFXRKVQINDKDDTNEYKHAFEIILKDENSVIFSAKSAEEKNNWXAALISLQYRSTLE 354
>pdb|2IJE|S Chain S, Crystal Structure Of The Cdc25 Domain Of Rasgrf1
Length = 240
Score = 149 bits (375), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 144/247 (58%), Gaps = 13/247 (5%)
Query: 781 IAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHTTNFTRWLEK 840
+ +EIA QLTLL+ F+S+ E G W K K E +P ++K KH + + ++
Sbjct: 3 LGSALEIAEQLTLLDHLVFKSIPYEEFFGQGWMKAEKYERTPYIMKTTKHFNHVSNFIAS 62
Query: 841 IIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRL 900
I+ E+ R + + + + + + + L+N+N VL +TS++ +A++RL+ T+ + +
Sbjct: 63 EIIRNEDISARASAIEKWVAVADICRCLHNYNAVLEITSSINRSAIFRLKKTWLKVSKQT 122
Query: 901 QKVLEDAREL--NGDHFKKYQEKLRNINPPCIPFFGMYLTNILHIEEGNPDFLPDSKLIN 958
+ +L+ ++L + FK +E LRN +PPC+P+ GMYLT+++ IEEG P++ D L+N
Sbjct: 123 KSLLDKLQKLVSSDGRFKNLRESLRNCDPPCVPYLGMYLTDLVFIEEGTPNYTEDG-LVN 181
Query: 959 FTKRRKVAEIISEIQQYQNEPYCLSVVPIYREFFENLSPFEGIDDNEMCN--ILFEQSLL 1016
F+K R ++ II EI+Q+Q Y + P ++ +D++ M + L+E SLL
Sbjct: 182 FSKMRMISHIIREIRQFQQTTYKIDPQPKVIQYL--------LDESFMLDEESLYESSLL 233
Query: 1017 IEPRHAT 1023
IEP+ T
Sbjct: 234 IEPKLPT 240
>pdb|1Q9C|A Chain A, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
pdb|1Q9C|B Chain B, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
pdb|1Q9C|C Chain C, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
pdb|1Q9C|D Chain D, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
pdb|1Q9C|E Chain E, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
pdb|1Q9C|F Chain F, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
pdb|1Q9C|G Chain G, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
pdb|1Q9C|H Chain H, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
pdb|1Q9C|I Chain I, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
Length = 191
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 94/176 (53%), Gaps = 2/176 (1%)
Query: 18 DFHEAYNENRWKGTLVSSLHSILKQVHNSLDINTDALYYTEXXXXXXXXXXXXXXXXXTT 77
+F N +W+G LV +L + QVH +L+ N DAL Y E +
Sbjct: 9 EFFSEENAPKWRGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNXLCQAQPR-SA 67
Query: 78 SDMEGKIKKYFPNPISEWTFNEAKQALEKGKKKSSLVISIDRVQNILQKEFYFRKVETNM 137
SD+E +++K FP+PI +W +A+ A+EK K+++ L + ++++ +L KE K++ +
Sbjct: 68 SDVEERVQKSFPHPIDKWAIADAQSAIEKRKRRNPLSLPVEKIHPLL-KEVLGYKIDHQV 126
Query: 138 XXXXXXXXXXXXXXXXKLVGNYVKNIRKVDISIQDIDVAMYADKALLELFFQEDDD 193
KL GNYV+NIR +I+ QDI VA ADK L + F Q+ +D
Sbjct: 127 SVYIVAVLEYISADILKLAGNYVRNIRHYEITKQDIKVAXCADKVLXDXFHQDVED 182
>pdb|1AWE|A Chain A, Human Sos1 Pleckstrin Homology (Ph) Domain, Nmr, 20
Structures
Length = 130
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 84/137 (61%), Gaps = 8/137 (5%)
Query: 423 HELKKNVDGVDVRDLRPYLEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKIS 482
+E++KN+DG + +D+ EF E TL + K ER ++ FDG++I CKSN
Sbjct: 2 NEIQKNIDGWEGKDIGQCCNEFIMEGTLTRVGAKH----ERHIFLFDGLMICCKSNH--- 54
Query: 483 VTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNAFEIAPRDQPSIIIVTKSPEDK 542
P +S E++ KE +F+RKV+IND ++T++ K+AFEI +D+ S+I KS E+K
Sbjct: 55 -GQPRLPGASNAEYRLKEKFFMRKVQINDKDDTNEYKHAFEIILKDENSVIFSAKSAEEK 113
Query: 543 KSWFSDLIMVNTKSMLE 559
+W + LI + +S LE
Sbjct: 114 NNWMAALISLQYRSTLE 130
>pdb|3QXL|A Chain A, Crystal Structure Of The Cdc25 Domain From Ral-Specific
Guanine- Nucleotide Exchange Factor Ralgps1a
pdb|3QXL|B Chain B, Crystal Structure Of The Cdc25 Domain From Ral-Specific
Guanine- Nucleotide Exchange Factor Ralgps1a
Length = 271
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 99/175 (56%), Gaps = 3/175 (1%)
Query: 777 FNILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHTTNFTR 836
F++L P E A Q+TL++ F++++P EL W+KK K +PN++ + +
Sbjct: 26 FDVLKVTPEEFASQITLMDIPVFKAIQPEELASCGWSKKEKHSLAPNVVAFTRRFNQVSF 85
Query: 837 WLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQAL 896
W+ + I+ A+ R I++ +++ L +LNN + +++V SA+ SA ++RL T+ L
Sbjct: 86 WVVREILTAQTLKIRAEILSHFVKIAKKLLELNNLHSLMSVVSALQSAPIFRLTKTWALL 145
Query: 897 PTRLQKVLEDARELNG--DHFKKYQEKLRNIN-PPCIPFFGMYLTNILHIEEGNP 948
+ + E L D++K+ +E +R++ P IP+ G+YL ++++I+ P
Sbjct: 146 NRKDKTTFEKLDYLMSKEDNYKRTREYIRSLKMVPSIPYLGIYLLDLIYIDSAYP 200
>pdb|1PMS|A Chain A, Pleckstrin Homology Domain Of Son Of Sevenless 1 (Sos1)
With Glycine-Serine Added To The N-Terminus, Nmr, 20
Structures
Length = 136
Score = 97.1 bits (240), Expect = 5e-20, Method: Composition-based stats.
Identities = 52/139 (37%), Positives = 85/139 (61%), Gaps = 8/139 (5%)
Query: 418 SLEKIHELKKNVDGVDVRDLRPYLEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKS 477
+++K++E++KN+DG + +D+ EF E TL + K ER ++ FDG++I CKS
Sbjct: 6 AIKKMNEIQKNIDGWEGKDIGQCCNEFIMEGTLTRVGAKH----ERHIFLFDGLMICCKS 61
Query: 478 NKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNAFEIAPRDQPSIIIVTK 537
N P +S E++ KE +F+RKV+IND ++T + K+AFEI +D S+I K
Sbjct: 62 NHG----QPRLPGASSAEYRLKEKFFMRKVQINDKDDTSEYKHAFEIILKDGNSVIFSAK 117
Query: 538 SPEDKKSWFSDLIMVNTKS 556
S E+K +W + LI + +S
Sbjct: 118 SAEEKNNWMAALISLQYRS 136
>pdb|2BYV|E Chain E, Structure Of The Camp Responsive Exchange Factor Epac2 In
Its Auto-Inhibited State
Length = 999
Score = 76.3 bits (186), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 104/222 (46%), Gaps = 6/222 (2%)
Query: 761 SPPPIEVHVPINSIDEFNILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEY 820
+P P + ++ F ++ + ++A Q+T +++ F V EL+ + + N +
Sbjct: 740 TPLPEQEGPTTGTVGTFELMSSK--DLAYQMTTYDWELFNCVHELELIYHTFGRHNFKKT 797
Query: 821 SPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSA 880
+ NL ++ W+ + +R+ ++ + I++ ++ N N A+
Sbjct: 798 TANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMG 857
Query: 881 MGSAAVYRLRFTFQALPTRLQKVLEDARELN--GDHFKKYQEKLRNINPPCIPFFGMYLT 938
+ + AV RL T++ LP++ +K + L + + Y+ + PP IPF + +
Sbjct: 858 LSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAAKLEPPLIPFMPLLIK 917
Query: 939 NILHIEEGNPDFLPDSKLINFTKRRKVAEIISEIQQYQNEPY 980
++ EGN F+ + L+NF K R +A ++ Y+++P+
Sbjct: 918 DMTFTHEGNKTFIDN--LVNFEKMRMIANTARTVRYYRSQPF 957
>pdb|4F7Z|A Chain A, Conformational Dynamics Of Exchange Protein Directly
Activated By Camp
Length = 999
Score = 76.3 bits (186), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 104/222 (46%), Gaps = 6/222 (2%)
Query: 761 SPPPIEVHVPINSIDEFNILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEY 820
+P P + ++ F ++ + ++A Q+T +++ F V EL+ + + N +
Sbjct: 740 TPLPEQEGPTTGTVGTFELMSSK--DLAYQMTTYDWELFNCVHELELIYHTFGRHNFKKT 797
Query: 821 SPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSA 880
+ NL ++ W+ + +R+ ++ + I++ ++ N N A+
Sbjct: 798 TANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMG 857
Query: 881 MGSAAVYRLRFTFQALPTRLQKVLEDARELN--GDHFKKYQEKLRNINPPCIPFFGMYLT 938
+ + AV RL T++ LP++ +K + L + + Y+ + PP IPF + +
Sbjct: 858 LSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAAKLEPPLIPFMPLLIK 917
Query: 939 NILHIEEGNPDFLPDSKLINFTKRRKVAEIISEIQQYQNEPY 980
++ EGN F+ + L+NF K R +A ++ Y+++P+
Sbjct: 918 DMTFTHEGNKTFIDN--LVNFEKMRMIANTARTVRYYRSQPF 957
>pdb|3CF6|E Chain E, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 694
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 104/222 (46%), Gaps = 6/222 (2%)
Query: 761 SPPPIEVHVPINSIDEFNILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEY 820
+P P + ++ F ++ + ++A Q+T +++ F V EL+ + + N +
Sbjct: 435 TPLPEQEGPTTGTVGTFELMSSK--DLAYQMTTYDWELFNCVHELELIYHTFGRHNFKKT 492
Query: 821 SPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSA 880
+ NL ++ W+ + +R+ ++ + I++ ++ N N A+
Sbjct: 493 TANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMG 552
Query: 881 MGSAAVYRLRFTFQALPTRLQKVLEDARELN--GDHFKKYQEKLRNINPPCIPFFGMYLT 938
+ + AV RL T++ LP++ +K + L + + Y+ + PP IPF + +
Sbjct: 553 LSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAAKLEPPLIPFMPLLIK 612
Query: 939 NILHIEEGNPDFLPDSKLINFTKRRKVAEIISEIQQYQNEPY 980
++ EGN F+ + L+NF K R +A ++ Y+++P+
Sbjct: 613 DMTFTHEGNKTFIDN--LVNFEKMRMIANTARTVRYYRSQPF 652
>pdb|2PZ1|A Chain A, Crystal Structure Of Auto-Inhibited Asef
Length = 466
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 77/387 (19%), Positives = 147/387 (37%), Gaps = 71/387 (18%)
Query: 213 VVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCLLGAV 272
V+N+ ++ E+ +I+ L+ I + + + K + +++ ++F IE+IY + A+
Sbjct: 122 VINEILSTERDYIKHLRDICEGYVRQCRKRADMFSEEQLRTIFGNIEDIYRCQKAFVKAL 181
Query: 273 ED--------ISEMSSDDHCIGSCXXXXXXXXXXXVYEKLLHNIVNQKSIEVLSMHVTQP 324
E +SE+ G+C +Y + +N N +
Sbjct: 182 EQRFNRERPHLSEL-------GAC--FLEHQADFQIYSEYCNNHPNA---------CVEL 223
Query: 325 SILNTLQFAGYGFKEC------VKYYLPNLLMSPLYHCNLY----FEYIKIFHSLTDSSK 374
S L L Y F+ C + L L++P+ Y E +K H K
Sbjct: 224 SRLTKLSKYVYFFEACRLLQKMIDISLDGFLLTPVQKICKYPLQLAELLKYTHPQHRDFK 283
Query: 375 DKECLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKNVDGVDV 434
D E A KN R + L++++KI + + +++ +
Sbjct: 284 DVEAALHAM-------------------KNVAQLINERKRRLENIDKIAQWQSSIEDWEG 324
Query: 435 RDLRPYLEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQY 494
DL E L + + +R + FD LI CK + + +V+ +
Sbjct: 325 EDLLVRSSELIYSGELTRVTQPQAKSQQRMFFLFDHQLIYCKKD-----LLRRDVLYYKG 379
Query: 495 EFKCKEMYFLRKVEINDYENTD---DIKNAFEI---APRDQPSIIIVTKSPEDKKSWFSD 548
+M L V++ D ++ D IKNAF + A D S ++ T+ PE K+ W
Sbjct: 380 RL---DMDGLEVVDLEDGKDRDLHVSIKNAFRLHRGATGD--SHLLCTRKPEQKQRWLKA 434
Query: 549 LIMVNTKSMLERTLDSIILDEEKKHPL 575
+ L++ I + ++K +
Sbjct: 435 FAREREQVQLDQETGFSITELQRKQAM 461
>pdb|2DX1|A Chain A, Crystal Structure Of Rhogef Protein Asef
Length = 482
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 73/358 (20%), Positives = 135/358 (37%), Gaps = 71/358 (19%)
Query: 213 VVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCLLGAV 272
V+N+ ++ E+ +I+ L+ I + + + K +++ ++F IE+IY + A+
Sbjct: 159 VINEILSTERDYIKHLRDICEGYVRQCRKRADXFSEEQLRTIFGNIEDIYRCQKAFVKAL 218
Query: 273 ED--------ISEMSSDDHCIGSCXXXXXXXXXXXVYEKLLHNIVNQKSIEVLSMHVTQP 324
E +SE+ G+C +Y + +N N +
Sbjct: 219 EQRFNRERPHLSEL-------GACFLEHQADFQ--IYSEYCNNHPNA---------CVEL 260
Query: 325 SILNTLQFAGYGFKEC------VKYYLPNLLMSPLYHCNLY----FEYIKIFHSLTDSSK 374
S L L Y F+ C + L L++P+ Y E +K H K
Sbjct: 261 SRLTKLSKYVYFFEACRLLQKXIDISLDGFLLTPVQKICKYPLQLAELLKYTHPQHRDFK 320
Query: 375 DKECLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKNVDGVDV 434
D E A KN R + L++++KI + + +++ +
Sbjct: 321 DVEAALHAX-------------------KNVAQLINERKRRLENIDKIAQWQSSIEDWEG 361
Query: 435 RDLRPYLEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQY 494
DL E L + + +R + FD LI CK + + +V+ +
Sbjct: 362 EDLLVRSSELIYSGELTRVTQPQAKSQQRXFFLFDHQLIYCKKD-----LLRRDVLYYKG 416
Query: 495 EFKCKEMYFLRKVEINDYENTD---DIKNAFEI---APRDQPSIIIVTKSPEDKKSWF 546
+ L V++ D ++ D IKNAF + A D S ++ T+ PE K+ W
Sbjct: 417 RL---DXDGLEVVDLEDGKDRDLHVSIKNAFRLHRGATGD--SHLLCTRKPEQKQRWL 469
>pdb|2AZN|A Chain A, X-Ray Structure Of
2,5-Diamino-6-Ribosylamino-4(3h)-Pyrimidinone 5-
Phosphate Reductase
pdb|2AZN|B Chain B, X-Ray Structure Of
2,5-Diamino-6-Ribosylamino-4(3h)-Pyrimidinone 5-
Phosphate Reductase
pdb|2AZN|C Chain C, X-Ray Structure Of
2,5-Diamino-6-Ribosylamino-4(3h)-Pyrimidinone 5-
Phosphate Reductase
pdb|2AZN|D Chain D, X-Ray Structure Of
2,5-Diamino-6-Ribosylamino-4(3h)-Pyrimidinone 5-
Phosphate Reductase
pdb|2AZN|E Chain E, X-Ray Structure Of
2,5-Diamino-6-Ribosylamino-4(3h)-Pyrimidinone 5-
Phosphate Reductase
pdb|2AZN|F Chain F, X-Ray Structure Of
2,5-Diamino-6-Ribosylamino-4(3h)-Pyrimidinone 5-
Phosphate Reductase
Length = 219
Score = 31.6 bits (70), Expect = 2.9, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 26/42 (61%)
Query: 393 LSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKNVDGVDV 434
+S + +GK A + N +R+ + L ++H+++ NVDG+ V
Sbjct: 7 ISNVGXTLDGKLATINNDSRISCEEDLIRVHKIRANVDGIXV 48
>pdb|1N4A|A Chain A, The Ligand Bound Structure Of E.coli Btuf, The Periplasmic
Binding Protein For Vitamin B12
pdb|1N4A|B Chain B, The Ligand Bound Structure Of E.coli Btuf, The Periplasmic
Binding Protein For Vitamin B12
pdb|1N4D|A Chain A, The Ligand-Free Structure Of E Coli Btuf, The Periplasmic
Binding Protein For Vitamin B12
pdb|1N4D|B Chain B, The Ligand-Free Structure Of E Coli Btuf, The Periplasmic
Binding Protein For Vitamin B12
Length = 252
Score = 31.2 bits (69), Expect = 3.0, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 969 ISEIQQYQNEPYCLSVVPIYREFFENLSPFEGIDDNEMCNILFEQSL 1015
I +I+QY E + V+P+ ++FE SP + ++CN L + L
Sbjct: 199 IPKIKQYWGEQLKIPVIPLTSDWFERASPRIILAAQQLCNALSQVDL 245
>pdb|4DBL|E Chain E, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|J Chain J, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4FI3|F Chain F, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 255
Score = 31.2 bits (69), Expect = 3.6, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 969 ISEIQQYQNEPYCLSVVPIYREFFENLSPFEGIDDNEMCNIL 1010
I +I+QY E + V+P+ ++FE SP + ++CN L
Sbjct: 201 IPKIKQYWGEQLKIPVIPLTSDWFERASPRIILAAQQLCNAL 242
>pdb|1N2Z|A Chain A, 2.0 Angstrom Structure Of Btuf, The Vitamin B12 Binding
Protein Of E. Coli
pdb|1N2Z|B Chain B, 2.0 Angstrom Structure Of Btuf, The Vitamin B12 Binding
Protein Of E. Coli
Length = 245
Score = 30.8 bits (68), Expect = 3.8, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 969 ISEIQQYQNEPYCLSVVPIYREFFENLSPFEGIDDNEMCNIL 1010
I +I+QY E + V+P+ ++FE SP + ++CN L
Sbjct: 200 IPKIKQYWGEQLKIPVIPLTSDWFERASPRIILAAQQLCNAL 241
>pdb|2QI9|F Chain F, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 245
Score = 30.8 bits (68), Expect = 3.8, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 969 ISEIQQYQNEPYCLSVVPIYREFFENLSPFEGIDDNEMCNIL 1010
I +I+QY E + V+P+ ++FE SP + ++CN L
Sbjct: 200 IPKIKQYWGEQLKIPVIPLTSDWFERASPRIILAAQQLCNAL 241
>pdb|3LS8|A Chain A, Crystal Structure Of Human Pik3c3 In Complex With 3-[4-(4-
Morpholinyl)thieno[3,2-D]pyrimidin-2-Yl]-Phenol
pdb|3LS8|B Chain B, Crystal Structure Of Human Pik3c3 In Complex With 3-[4-(4-
Morpholinyl)thieno[3,2-D]pyrimidin-2-Yl]-Phenol
Length = 614
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 501 MYFLRKVEINDYENTDDIKNAFEIAPRD 528
MY L+ V+ YEN DDIKN E +D
Sbjct: 129 MYLLQLVQALKYENFDDIKNGLEPTKKD 156
>pdb|3IHY|A Chain A, Human Pik3c3 Crystal Structure
pdb|3IHY|B Chain B, Human Pik3c3 Crystal Structure
pdb|3IHY|C Chain C, Human Pik3c3 Crystal Structure
pdb|3IHY|D Chain D, Human Pik3c3 Crystal Structure
pdb|3IHY|E Chain E, Human Pik3c3 Crystal Structure
Length = 600
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 501 MYFLRKVEINDYENTDDIKNAFEIAPRD 528
MY L+ V+ YEN DDIKN E +D
Sbjct: 115 MYLLQLVQALKYENFDDIKNGLEPTKKD 142
>pdb|1TXD|A Chain A, Crystal Structure Of The Dh/ph Domains Of
Leukemia-associated Rhogef
pdb|1X86|A Chain A, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|C Chain C, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|E Chain E, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|G Chain G, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
Length = 385
Score = 30.0 bits (66), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 11/82 (13%)
Query: 211 EQVVNDFVAEEKLFIRELKLILKIFYEELNK---ITPLKEIKEVHSLFEIIEEIYNLTVC 267
++V+N+ E+ +R LK++ ++FY+ +++ ++P E+ +F +E+I L +
Sbjct: 26 QEVINELFYTERAHVRTLKVLDQVFYQRVSREGILSP----SELRKIFSNLEDILQLHIG 81
Query: 268 L---LGAVEDISEMSSDDHCIG 286
L + AV +E S D IG
Sbjct: 82 LNEQMKAVRKRNETSVIDQ-IG 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,623,303
Number of Sequences: 62578
Number of extensions: 1321623
Number of successful extensions: 3247
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 3133
Number of HSP's gapped (non-prelim): 48
length of query: 1108
length of database: 14,973,337
effective HSP length: 109
effective length of query: 999
effective length of database: 8,152,335
effective search space: 8144182665
effective search space used: 8144182665
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)