Query psy17173
Match_columns 1108
No_of_seqs 570 out of 2622
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 23:45:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17173.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17173hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3629|consensus 100.0 6.7E-56 1.5E-60 490.2 33.8 389 600-1027 60-480 (728)
2 smart00147 RasGEF Guanine nucl 100.0 2.6E-48 5.6E-53 426.2 25.9 237 779-1021 1-242 (242)
3 cd00155 RasGEF Guanine nucleot 100.0 1.1E-46 2.4E-51 412.2 25.3 232 779-1016 1-237 (237)
4 KOG4424|consensus 100.0 3.5E-42 7.6E-47 388.7 26.5 299 210-552 67-368 (623)
5 KOG2996|consensus 100.0 1.4E-39 3E-44 363.1 24.5 298 212-552 200-510 (865)
6 KOG3542|consensus 100.0 2.5E-38 5.4E-43 356.4 31.8 200 778-980 863-1066(1283)
7 KOG2378|consensus 100.0 3.3E-38 7.1E-43 345.3 26.9 390 605-1021 68-573 (573)
8 PF00617 RasGEF: RasGEF domain 100.0 2.8E-39 6.1E-44 341.0 15.8 184 780-964 1-188 (188)
9 KOG3518|consensus 100.0 3.4E-37 7.4E-42 325.2 15.2 300 208-551 119-430 (521)
10 KOG2070|consensus 100.0 1.7E-34 3.7E-39 318.1 23.9 310 202-551 93-404 (661)
11 KOG3523|consensus 100.0 2.1E-34 4.5E-39 326.1 23.6 308 208-549 256-590 (695)
12 KOG3541|consensus 100.0 1.8E-31 3.8E-36 290.3 20.8 398 604-1023 23-464 (477)
13 KOG3520|consensus 100.0 3.5E-30 7.5E-35 313.9 17.8 306 207-552 388-720 (1167)
14 KOG4305|consensus 100.0 5.8E-30 1.3E-34 311.7 16.6 330 208-559 334-692 (1029)
15 KOG3521|consensus 100.0 1.6E-28 3.5E-33 279.4 22.4 313 208-557 176-530 (846)
16 smart00325 RhoGEF Guanine nucl 100.0 1.1E-28 2.3E-33 258.4 16.6 178 213-395 1-180 (180)
17 cd00160 RhoGEF Guanine nucleot 100.0 2.3E-28 5.1E-33 256.0 17.5 178 210-394 1-181 (181)
18 KOG3417|consensus 100.0 2.5E-29 5.3E-34 319.0 10.5 460 580-1050 6-495 (840)
19 PLN00154 histone H2A; Provisio 99.9 2.1E-28 4.6E-33 232.3 7.9 90 103-193 27-117 (136)
20 PTZ00252 histone H2A; Provisio 99.9 6.9E-28 1.5E-32 227.8 8.0 87 107-193 18-106 (134)
21 PLN00153 histone H2A; Provisio 99.9 1.1E-27 2.4E-32 226.8 7.8 90 104-193 14-103 (129)
22 PLN00157 histone H2A; Provisio 99.9 1.1E-27 2.4E-32 227.6 7.3 91 103-193 15-105 (132)
23 PTZ00017 histone H2A; Provisio 99.9 1.3E-27 2.8E-32 228.2 7.7 91 103-193 16-106 (134)
24 PLN00156 histone H2AX; Provisi 99.9 1.1E-27 2.5E-32 228.6 6.8 91 103-193 18-108 (139)
25 KOG1756|consensus 99.9 1.7E-27 3.6E-32 220.2 6.3 100 94-193 6-106 (131)
26 smart00414 H2A Histone 2A. 99.9 3.6E-27 7.7E-32 219.8 8.3 88 106-193 1-88 (106)
27 KOG4240|consensus 99.9 2.5E-27 5.4E-32 287.3 6.6 293 210-558 633-933 (1025)
28 PF00621 RhoGEF: RhoGEF domain 99.9 3.8E-25 8.2E-30 230.8 16.7 178 213-395 1-180 (180)
29 COG5262 HTA1 Histone H2A [Chro 99.9 3.2E-26 6.9E-31 207.0 6.5 90 103-192 15-104 (132)
30 KOG3519|consensus 99.9 2.1E-25 4.6E-30 277.7 15.0 258 208-482 335-599 (756)
31 KOG1757|consensus 99.9 1.9E-26 4.2E-31 206.2 3.2 89 101-189 17-106 (131)
32 cd00074 H2A Histone 2A; H2A is 99.9 1.9E-25 4.1E-30 211.0 8.4 95 105-199 11-105 (115)
33 KOG0689|consensus 99.9 1.2E-25 2.5E-30 257.3 7.7 291 212-556 65-363 (448)
34 KOG3522|consensus 99.9 2.2E-24 4.8E-29 253.2 12.8 264 213-515 4-274 (925)
35 cd01261 PH_SOS Son of Sevenles 99.9 1.7E-21 3.7E-26 184.4 13.1 112 441-556 1-112 (112)
36 KOG3531|consensus 99.9 1.4E-22 3E-27 236.4 4.5 295 213-551 537-842 (1036)
37 COG5422 ROM1 RhoGEF, Guanine n 99.8 6.8E-21 1.5E-25 222.8 11.2 317 208-554 483-835 (1175)
38 KOG3524|consensus 99.8 2.6E-19 5.7E-24 206.2 11.8 310 209-550 384-708 (850)
39 PF00618 RasGEF_N: RasGEF N-te 99.7 1.7E-18 3.8E-23 164.7 8.1 103 606-722 1-104 (104)
40 smart00229 RasGEFN Guanine nuc 99.7 7E-18 1.5E-22 166.5 12.3 121 605-744 3-124 (127)
41 cd01224 PH_Collybistin Collybi 99.7 3.9E-17 8.5E-22 152.1 12.9 98 443-551 1-105 (109)
42 cd01218 PH_phafin2 Phafin2 Pl 99.7 3.4E-16 7.4E-21 146.9 13.5 100 441-555 1-100 (104)
43 cd01220 PH_CDEP Chondrocyte-de 99.7 3.5E-16 7.5E-21 146.4 13.4 97 443-553 1-97 (99)
44 cd06224 REM Guanine nucleotide 99.7 3.7E-16 8.1E-21 153.0 12.3 102 611-727 1-103 (122)
45 cd01219 PH_FGD FGD (faciogenit 99.6 2.9E-15 6.3E-20 141.5 13.2 99 443-553 1-99 (101)
46 PLN00155 histone H2A; Provisio 99.6 1.9E-16 4.1E-21 128.1 3.0 45 104-148 14-58 (58)
47 cd01222 PH_clg Clg (common-sit 99.6 2E-14 4.4E-19 133.1 12.4 92 442-553 2-95 (97)
48 cd01223 PH_Vav Vav pleckstrin 99.5 2.5E-14 5.5E-19 134.5 9.7 104 442-554 2-112 (116)
49 KOG3417|consensus 99.5 8.2E-14 1.8E-18 177.8 12.4 223 783-1022 609-835 (840)
50 cd01228 PH_BCR-related BCR (br 99.5 8.2E-14 1.8E-18 124.9 8.1 95 442-554 1-95 (96)
51 cd01232 PH_TRIO Trio pleckstri 99.5 4.9E-13 1.1E-17 127.7 12.2 105 442-553 3-112 (114)
52 cd01226 PH_exo84 Exocyst compl 99.3 1.7E-11 3.7E-16 113.0 11.5 95 444-552 2-97 (100)
53 cd01227 PH_Dbs Dbs (DBL's big 99.3 3.1E-11 6.7E-16 117.9 12.9 107 442-556 1-118 (133)
54 cd01225 PH_Cool_Pix Cool (clon 99.2 1.5E-10 3.2E-15 107.5 12.3 107 432-551 1-107 (111)
55 cd01221 PH_ephexin Ephexin Ple 99.2 1.5E-10 3.2E-15 111.5 11.6 96 442-550 1-119 (125)
56 PF00125 Histone: Core histone 98.9 6.5E-10 1.4E-14 99.2 4.0 73 108-180 2-75 (75)
57 PF00169 PH: PH domain; Inter 98.7 1.6E-07 3.5E-12 87.9 12.8 97 445-553 2-103 (104)
58 smart00233 PH Pleckstrin homol 98.5 1.4E-06 3E-11 80.3 11.5 96 445-552 2-100 (102)
59 PF15405 PH_5: Pleckstrin homo 98.4 5.2E-07 1.1E-11 89.6 8.2 100 444-553 1-135 (135)
60 PF15411 PH_10: Pleckstrin hom 98.4 1.8E-06 3.8E-11 83.3 11.0 104 442-549 5-116 (116)
61 KOG4269|consensus 98.2 5.7E-07 1.2E-11 107.9 3.0 249 213-510 336-611 (1112)
62 cd00821 PH Pleckstrin homology 98.2 5.1E-06 1.1E-10 75.7 8.7 93 447-551 2-95 (96)
63 cd01246 PH_oxysterol_bp Oxyste 98.1 2.7E-05 5.8E-10 71.7 11.4 90 446-551 1-90 (91)
64 cd01233 Unc104 Unc-104 pleckst 98.1 3E-05 6.5E-10 73.3 11.7 93 444-552 2-97 (100)
65 cd01260 PH_CNK Connector enhan 98.0 6.7E-05 1.4E-09 70.2 11.3 90 446-551 2-95 (96)
66 cd01247 PH_GPBP Goodpasture an 97.9 8.6E-05 1.9E-09 68.8 10.7 89 447-551 2-90 (91)
67 cd00900 PH-like Pleckstrin hom 97.9 0.00012 2.7E-09 67.0 10.8 91 447-551 2-98 (99)
68 cd01252 PH_cytohesin Cytohesin 97.8 0.00021 4.6E-09 70.4 12.6 94 446-555 2-115 (125)
69 cd01238 PH_Tec Tec pleckstrin 97.8 0.00015 3.3E-09 69.2 10.2 93 445-551 1-105 (106)
70 smart00427 H2B Histone H2B. 97.7 7.2E-05 1.6E-09 67.5 6.5 75 33-107 4-87 (89)
71 cd01250 PH_centaurin Centaurin 97.6 0.00041 8.8E-09 64.2 10.6 92 446-551 1-93 (94)
72 cd01229 PH_etc2 Epithelial cel 97.5 0.00041 8.9E-09 65.1 8.1 92 462-553 27-127 (129)
73 PTZ00463 histone H2B; Provisio 97.4 0.00024 5.1E-09 66.8 5.9 79 30-108 28-115 (117)
74 PLN00158 histone H2B; Provisio 97.4 0.00027 5.9E-09 66.5 6.3 78 29-106 26-112 (116)
75 cd01241 PH_Akt Akt pleckstrin 97.4 0.0011 2.5E-08 62.7 10.5 91 445-552 2-101 (102)
76 cd01235 PH_SETbf Set binding f 97.4 0.0017 3.7E-08 61.2 11.2 90 447-552 2-100 (101)
77 cd01264 PH_melted Melted pleck 97.4 0.001 2.3E-08 62.5 9.5 90 447-551 3-99 (101)
78 cd01266 PH_Gab Gab (Grb2-assoc 97.4 0.0012 2.6E-08 63.3 10.1 78 459-552 18-107 (108)
79 cd01251 PH_centaurin_alpha Cen 97.3 0.0015 3.3E-08 62.0 10.3 93 446-554 1-101 (103)
80 KOG0931|consensus 97.3 0.001 2.3E-08 75.4 9.4 125 419-553 392-525 (627)
81 cd01257 PH_IRS Insulin recepto 97.2 0.0038 8.2E-08 59.0 11.3 92 444-551 2-100 (101)
82 COG5247 BUR6 Class 2 transcrip 97.1 0.00067 1.4E-08 61.5 5.2 73 114-186 23-95 (113)
83 KOG1729|consensus 97.1 0.00024 5.1E-09 78.9 2.3 111 434-559 36-146 (288)
84 cd01265 PH_PARIS-1 PARIS-1 ple 97.1 0.0045 9.9E-08 57.9 10.5 88 447-552 2-93 (95)
85 cd01244 PH_RasGAP_CG9209 RAS_G 97.0 0.0067 1.5E-07 57.0 10.6 75 460-551 21-97 (98)
86 cd01245 PH_RasGAP_CG5898 RAS G 97.0 0.0035 7.5E-08 58.8 8.6 88 448-551 3-97 (98)
87 cd01253 PH_beta_spectrin Beta- 96.9 0.0055 1.2E-07 58.2 9.7 80 459-551 22-103 (104)
88 cd01230 PH_EFA6 EFA6 Pleckstri 96.8 0.0095 2.1E-07 57.8 10.4 101 443-552 9-110 (117)
89 cd01236 PH_outspread Outspread 96.8 0.0098 2.1E-07 56.5 10.1 78 460-551 24-102 (104)
90 KOG0930|consensus 96.8 0.0057 1.2E-07 65.6 9.3 102 445-562 261-384 (395)
91 cd01255 PH_TIAM TIAM Pleckstri 96.7 0.017 3.7E-07 56.3 11.0 93 461-553 49-154 (160)
92 PF15413 PH_11: Pleckstrin hom 96.2 0.062 1.4E-06 51.9 11.9 103 446-551 1-111 (112)
93 KOG1659|consensus 95.5 0.019 4.2E-07 59.5 5.2 72 113-184 12-83 (224)
94 PF00808 CBFD_NFYB_HMF: Histon 95.5 0.025 5.5E-07 48.9 5.1 64 114-177 2-65 (65)
95 KOG1744|consensus 95.4 0.014 3E-07 56.2 3.4 79 28-106 35-122 (127)
96 cd01256 PH_dynamin Dynamin ple 95.4 0.16 3.6E-06 46.7 10.0 76 461-551 20-103 (110)
97 KOG0690|consensus 95.3 0.017 3.7E-07 63.9 4.2 107 445-565 16-128 (516)
98 PF15410 PH_9: Pleckstrin homo 95.2 0.09 2E-06 51.3 8.6 94 457-551 23-116 (119)
99 smart00803 TAF TATA box bindin 95.2 0.037 8.1E-07 47.8 5.1 64 114-178 2-65 (65)
100 cd01263 PH_anillin Anillin Ple 95.0 0.14 3E-06 50.1 9.2 93 447-551 4-121 (122)
101 cd01237 Unc112 Unc-112 pleckst 94.4 0.24 5.2E-06 46.9 8.7 79 462-552 21-102 (106)
102 PF15409 PH_8: Pleckstrin homo 94.2 0.58 1.3E-05 43.0 10.6 74 459-551 13-87 (89)
103 cd01254 PH_PLD Phospholipase D 93.8 0.59 1.3E-05 45.8 10.8 36 515-551 85-120 (121)
104 COG2036 HHT1 Histones H3 and H 93.3 0.12 2.5E-06 47.6 4.5 68 110-178 15-82 (91)
105 KOG3524|consensus 93.1 0.29 6.3E-06 59.2 8.5 170 212-396 397-571 (850)
106 PLN00035 histone H4; Provision 93.0 0.17 3.7E-06 47.5 5.2 63 115-178 30-92 (103)
107 cd00076 H4 Histone H4, one of 92.9 0.18 3.9E-06 45.9 5.1 63 115-178 14-76 (85)
108 PTZ00267 NIMA-related protein 92.8 0.68 1.5E-05 56.4 11.6 101 442-552 375-475 (478)
109 KOG0521|consensus 91.5 2.3 5.1E-05 54.3 14.3 263 258-552 89-367 (785)
110 cd01243 PH_MRCK MRCK (myotonic 90.7 4.9 0.00011 38.9 12.2 41 514-554 74-120 (122)
111 cd01242 PH_ROK Rok (Rho- assoc 90.3 2.4 5.3E-05 40.3 9.6 87 459-551 19-108 (112)
112 cd01249 PH_oligophrenin Oligop 89.0 2.2 4.7E-05 40.4 8.3 47 502-549 54-101 (104)
113 smart00417 H4 Histone H4. 88.7 0.59 1.3E-05 41.4 4.1 60 115-175 14-73 (74)
114 PTZ00015 histone H4; Provision 87.0 1.2 2.5E-05 42.1 5.1 63 115-178 31-93 (102)
115 cd07981 TAF12 TATA Binding Pro 85.9 1.6 3.5E-05 38.6 5.2 64 116-179 3-66 (72)
116 cd07979 TAF9 TATA Binding Prot 85.4 1.2 2.6E-05 43.4 4.6 61 118-179 5-65 (117)
117 KOG2059|consensus 85.1 6.1 0.00013 48.6 11.1 94 442-552 563-663 (800)
118 KOG3522|consensus 84.8 4.7 0.0001 50.5 10.1 244 208-479 13-270 (925)
119 PF12814 Mcp5_PH: Meiotic cell 81.0 14 0.00031 36.2 10.3 35 519-554 88-122 (123)
120 PF14593 PH_3: PH domain; PDB: 80.9 25 0.00055 33.5 11.4 90 441-555 10-101 (104)
121 cd08048 TAF11 TATA Binding Pro 77.6 6 0.00013 36.2 5.9 63 115-178 17-82 (85)
122 KOG1451|consensus 76.6 1.9E+02 0.0042 35.4 19.3 38 512-549 325-363 (812)
123 PF15277 Sec3-PIP2_bind: Exocy 76.3 19 0.00042 33.4 9.0 58 494-553 31-88 (91)
124 PTZ00283 serine/threonine prot 73.9 49 0.0011 40.5 14.5 34 518-551 454-487 (496)
125 cd01231 PH_Lnk LNK-family Plec 73.7 4.9 0.00011 37.6 4.2 34 518-551 73-106 (107)
126 PF15406 PH_6: Pleckstrin homo 71.7 8.6 0.00019 36.5 5.4 31 519-550 80-110 (112)
127 PF15404 PH_4: Pleckstrin homo 71.2 35 0.00076 36.0 10.4 34 446-479 1-34 (185)
128 KOG3219|consensus 70.7 4.4 9.6E-05 42.4 3.6 64 114-178 112-176 (195)
129 cd01259 PH_Apbb1ip Apbb1ip (Am 67.4 12 0.00027 35.8 5.5 101 447-556 3-111 (114)
130 PF04719 TAFII28: hTAFII28-lik 66.9 8.6 0.00019 35.6 4.3 63 115-178 24-88 (90)
131 cd01240 PH_beta-ARK Beta adren 66.8 13 0.00028 35.3 5.4 95 444-553 3-98 (116)
132 cd08050 TAF6 TATA Binding Prot 66.7 7.6 0.00017 45.2 5.0 53 126-178 10-62 (343)
133 cd01234 PH_CADPS CADPS (Ca2+-d 60.8 14 0.00031 34.8 4.5 92 445-552 3-109 (117)
134 PF02969 TAF: TATA box binding 58.4 20 0.00044 31.2 4.8 62 115-178 4-66 (66)
135 PLN00158 histone H2B; Provisio 56.1 21 0.00046 34.3 5.0 62 117-178 30-91 (116)
136 cd03569 VHS_Hrs_Vps27p VHS dom 48.4 1.5E+02 0.0032 29.9 10.1 70 609-710 2-77 (142)
137 PLN00188 enhanced disease resi 48.1 92 0.002 39.3 10.0 100 443-554 3-110 (719)
138 cd03567 VHS_GGA VHS domain fam 46.0 1.6E+02 0.0035 29.6 9.8 72 611-711 1-75 (139)
139 PF15408 PH_7: Pleckstrin homo 46.0 12 0.00027 33.7 1.6 88 447-550 1-94 (104)
140 smart00428 H3 Histone H3. 44.6 44 0.00095 31.9 5.1 49 130-178 51-99 (105)
141 KOG3723|consensus 44.2 9.2 0.0002 45.7 0.7 96 445-555 736-838 (851)
142 PF08458 PH_2: Plant pleckstri 42.9 2.8E+02 0.006 26.8 10.1 37 519-556 70-106 (110)
143 PLN02866 phospholipase D 40.7 1.1E+02 0.0024 40.3 9.5 39 514-553 269-307 (1068)
144 smart00576 BTP Bromodomain tra 40.1 52 0.0011 29.4 4.7 58 121-179 13-70 (77)
145 smart00427 H2B Histone H2B. 39.1 54 0.0012 30.3 4.6 60 119-178 6-65 (89)
146 PF00125 Histone: Core histone 38.3 37 0.0008 29.9 3.5 40 31-70 6-49 (75)
147 cd01239 PH_PKD Protein kinase 36.3 3.4E+02 0.0075 26.4 9.7 67 445-527 1-73 (117)
148 KOG1657|consensus 35.3 36 0.00078 37.3 3.5 73 112-184 72-144 (236)
149 KOG3751|consensus 33.1 1.5E+02 0.0032 35.9 8.1 107 443-558 316-429 (622)
150 COG5208 HAP5 CCAAT-binding fac 31.9 77 0.0017 33.5 5.0 75 113-187 108-182 (286)
151 cd03568 VHS_STAM VHS domain fa 29.8 3.3E+02 0.0072 27.5 9.2 70 612-710 1-73 (144)
152 PF15630 CENP-S: Kinetochore c 29.2 66 0.0014 28.9 3.5 69 111-183 5-76 (76)
153 PTZ00463 histone H2B; Provisio 29.1 94 0.002 30.1 4.7 60 119-178 33-92 (117)
154 KOG1739|consensus 28.5 85 0.0019 37.4 5.1 95 443-554 23-117 (611)
155 smart00288 VHS Domain present 27.0 4.1E+02 0.0089 26.3 9.2 70 612-710 1-73 (133)
156 KOG1924|consensus 26.3 1.5E+02 0.0032 37.6 6.8 14 930-943 401-414 (1102)
157 cd07978 TAF13 The TATA Binding 23.1 92 0.002 29.0 3.4 37 144-182 33-69 (92)
158 KOG1585|consensus 22.3 1.4E+02 0.003 33.0 5.0 39 123-161 173-214 (308)
159 KOG0869|consensus 22.1 1.6E+02 0.0034 30.0 5.0 63 115-178 33-97 (168)
160 KOG0932|consensus 21.6 1E+02 0.0022 37.4 4.2 34 517-550 581-614 (774)
161 KOG0705|consensus 20.5 97 0.0021 37.8 3.7 40 520-559 446-485 (749)
No 1
>KOG3629|consensus
Probab=100.00 E-value=6.7e-56 Score=490.17 Aligned_cols=389 Identities=24% Similarity=0.350 Sum_probs=313.0
Q ss_pred cCCCcccccccCHHHHHHHHccC-CCCChhHHHHHHHhccccCCHHHHHHHHHHhcCCCCCCcccccCccchhhhhhHHH
Q psy17173 600 QNTNMPLIKGATLHKLIERLTYH-IYADPAFIGTFLTTYRSFTTPTELLDLLIDRFNVPDPNKVFENNNADIEESILRED 678 (1108)
Q Consensus 600 ~~~~~~~IkagTL~kLIe~Lt~~-~~~D~~f~~~FLlTyrsFttp~~LL~~Li~Ry~~~~~~~~~~~~~~~~~~~~~~~~ 678 (1108)
+.++.+.||||||++||++|+.. ...|..|+.+||.|||+||++..||++|.+||...+..+ ++. +
T Consensus 60 e~~k~r~ikAGTlE~LVe~Ll~~~~~~D~~~~svFlaTyR~Ftst~~vL~llldRye~e~s~~---------~se--s-- 126 (728)
T KOG3629|consen 60 ESVKERLIKAGTLERLVECLLGSDDMMDSRHFSVFLATYRSFTSTAIVLDLLLDRYELENSVN---------GSE--S-- 126 (728)
T ss_pred cchhhhhhhcchHHHHHHHHhcCCCCcchhHHHHHHHHhhcccccHHHHHHHHHHHHhhhcCC---------chH--H--
Confidence 56788999999999999998754 578999999999999999999999999999998433211 111 1
Q ss_pred HHHHhhhccchhhhHHHHHHHHHHhhcccccccCHHHHHHHHHHHhhhccCch--hHHHHHHHHHHHHHhhhhhhhhhhc
Q psy17173 679 IIRYKKELCQPVQFRVLNVFRQWVQHHFYDFQRDQNLLEKLKSFLLNEISGKS--LRKWADIVLNLIQRKELDLEKEITF 756 (1108)
Q Consensus 679 ~~~~~~~~~~~vq~rVl~vl~~Wi~~~~~DF~~d~~ll~~L~~Fl~~~v~~~~--~~k~~~~l~~~l~r~~~~~~~~~~~ 756 (1108)
+ ..+|..|- +|+.|++.|+.||...+.+..++..+|+....++. .+..+.-.+...+|. ..
T Consensus 127 -~-------~~v~naI~-il~~WL~~~pEDF~~~~~~~~~ls~lL~~g~~~~~~e~ra~a~l~r~~~~ri-~~------- 189 (728)
T KOG3629|consen 127 -A-------LLVQNAIR-ILMCWLETYPEDFYDSDKDFAMLSSLLDFGGRNKLTELRAKARLQREVFKRI-GG------- 189 (728)
T ss_pred -H-------HHHHHHHH-HHHHHHHhChHhhcCccHHHHHHHHHHHhcCCCCcccchhHHHHHHHHHHhc-cc-------
Confidence 1 12444444 99999999999999877788777777774333321 111111112222221 11
Q ss_pred ccCCCCCCccccccCCCCccccccccCHHHHHHHHhHHHHHHhcCCChhhhhcccccCCCCC-CCCchHHHHHHHHhhHh
Q psy17173 757 AFNNSPPPIEVHVPINSIDEFNILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKA-EYSPNLIKIMKHTTNFT 835 (1108)
Q Consensus 757 ~~~~~pp~i~~~~~~p~~~~~~ll~~~p~eiA~QLTl~e~~lf~~I~~~Ell~~~w~k~~~~-~~~pni~~~i~~fn~ls 835 (1108)
.-..-|..+.... .++...+++..+....||+|||++|.++|+++-|+.|++++|+++|+. +.+|.+.+.|..||.++
T Consensus 190 ~~~~LP~~~~~~~-d~~~~~~dv~~f~~d~iAEQLT~~DA~LFk~l~phqClGcvWs~Rd~~ghl~ptvrATi~QFN~vs 268 (728)
T KOG3629|consen 190 MQAALPSLGQYVA-DMGNKMFDVGKFNCDQIAEQLTFWDAALFKELLPHQCLGCVWSKRDTAGHLVPTVRATIEQFNSVS 268 (728)
T ss_pred cccCCCccccccC-CCCccchhhhhhhHHHHHHHHHHHHHHHHHHhhhHhcccceeccCCCcccccchHHHHHHHHHHHH
Confidence 0011121222111 122367888999999999999999999999999999999999998864 67999999999999999
Q ss_pred hHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHhhcccccccchhhhhcCChHHHHHHHHHHhh--hh
Q psy17173 836 RWLEKIIVEA-ENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDAREL--NG 912 (1108)
Q Consensus 836 ~wv~~~IL~~-~~~~~Ra~~i~kfI~vA~~~~~l~NFns~~aI~sgL~s~~I~RLk~Tw~~l~~~~~k~l~~l~~l--~~ 912 (1108)
.-|.++||.. -.+++||++|+|||+||.+|+-+.||.++.||+++|++.+|+|||.+|..++.+....|++|.++ .+
T Consensus 269 ~~Vvssilg~~lrp~qRAkiieKWI~iA~E~rllknfssl~avvsalqs~pihrlk~aw~~v~rdsls~f~els~ifse~ 348 (728)
T KOG3629|consen 269 QRVVSSILGPDLRPEQRAKIIEKWIDIARECRLLKNFSSLKAVVSALQSEPIHRLKSAWNSVPRDSISQFRELSSIFSED 348 (728)
T ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHhhhccceeeeccccccHHHHHHhhhccCchhHHHHHHHHHhhcccc
Confidence 9999999974 48899999999999999999999999999999999999999999999999999999999999988 35
Q ss_pred hhHHHHHHHHhcC-----------------------CCCcccchhhhHhHHHHHHhcCCCCCCCCCcccHHHHHHHHHHH
Q psy17173 913 DHFKKYQEKLRNI-----------------------NPPCIPFFGMYLTNILHIEEGNPDFLPDSKLINFTKRRKVAEII 969 (1108)
Q Consensus 913 ~n~~~yR~~l~~~-----------------------~~p~IPflGv~L~DL~~i~egnp~~~~~~~lINf~K~r~i~~ii 969 (1108)
+|+.+-|+.|-+. ....|||||.||+||++++++.+|+.++ |+|||+|+|+.++++
T Consensus 349 ~n~~~sReLL~qeGtsksspLe~s~k~a~~r~qr~~~qGtVPyLGtFLtDLvMlDtA~~d~~e~-glINFeKRRkEFeVl 427 (728)
T KOG3629|consen 349 GNQGNSRELLIQEGTSKSSPLEASPKRAHARWQRQDKQGTVPYLGTFLTDLVMLDTAMNDYPEE-GLINFEKRRKEFEVL 427 (728)
T ss_pred cCCcchhHHHHHhcccccCCCCcchhhhhhhhhhccCCcccchHHHHHHHHHHHhhcccCCccc-ccchHhhhhHHHHHH
Confidence 7787888776431 1346999999999999999999999974 899999999999999
Q ss_pred HHHHHHhc--CCCCCCCchHHHHHHHhcCCCCCCCchhhHHHHHHHhhhccCCCCCCCCC
Q psy17173 970 SEIQQYQN--EPYCLSVVPIYREFFENLSPFEGIDDNEMCNILFEQSLLIEPRHATHVPK 1027 (1108)
Q Consensus 970 ~~i~~~Q~--~~Y~~~~~~~i~~~l~~l~~~~~~~e~e~~d~ly~~Sl~iEPr~~~~~~~ 1027 (1108)
.+|+.+|+ ..|++.++..+++||.-+.+ ++| |..|.+|+++||.....+|.
T Consensus 428 a~lrllQsaar~Ynl~pd~~f~aWf~~l~~---ltE----~es~~~s~eiE~p~~~stp~ 480 (728)
T KOG3629|consen 428 AKLRLLQSAARHYNLHPDEEFGAWFQVLEQ---LTE----DESIIQSCEIEKPPMHSTPD 480 (728)
T ss_pred HHHHHHHHHhhccCCCchHHHHHHHHhccC---CcH----HHHHHHhhcccCCCCCCCCC
Confidence 99999999 68999999999999986543 455 45899999999988776653
No 2
>smart00147 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases.
Probab=100.00 E-value=2.6e-48 Score=426.19 Aligned_cols=237 Identities=40% Similarity=0.759 Sum_probs=223.0
Q ss_pred ccccCHHHHHHHHhHHHHHHhcCCChhhhhcccccCCCCCCCCc-hHHHHHHHHhhHhhHHHHHhcCCCCHHHHHHHHHH
Q psy17173 779 ILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSP-NLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMTR 857 (1108)
Q Consensus 779 ll~~~p~eiA~QLTl~e~~lf~~I~~~Ell~~~w~k~~~~~~~p-ni~~~i~~fn~ls~wv~~~IL~~~~~~~Ra~~i~k 857 (1108)
+++++|.|||+|||++|+++|++|++.||++..|++.+....+| ||.+++++||.++.||+.+||.++++++|++++++
T Consensus 1 ~l~~~~~eiA~QlTl~d~~~f~~I~~~El~~~~~~~~~~~~~~p~~i~~~~~~~n~is~wv~~~Il~~~~~~~R~~~i~~ 80 (242)
T smart00147 1 LLLLDPKELAEQLTLLDFELFRKIDPSELLGSVWGKRSKKSPSPLNLERFIERFNEVSNWVATEILKQTTPKDRAELLSK 80 (242)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 46899999999999999999999999999999999888777788 99999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCChhHHHHHHHhhcccccccchhhhhcCChHHHHHHHHHHhh--hhhhHHHHHHHHhcCC-CCcccchh
Q psy17173 858 IIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDAREL--NGDHFKKYQEKLRNIN-PPCIPFFG 934 (1108)
Q Consensus 858 fI~vA~~~~~l~NFns~~aI~sgL~s~~I~RLk~Tw~~l~~~~~k~l~~l~~l--~~~n~~~yR~~l~~~~-~p~IPflG 934 (1108)
||+||.+|+++|||||++||++||++++|+||+.||+.|+++.++.+++|.++ +.+||++||+.++++. +|||||+|
T Consensus 81 fI~ia~~l~~l~Nfns~~aI~~~L~~~~I~RL~~tw~~l~~~~~~~~~~L~~l~s~~~n~~~yR~~l~~~~~~p~IP~lg 160 (242)
T smart00147 81 FIQVAKHCRELNNFNSLMAIVSALSSSPISRLKKTWEKLPSKYKKLFEELEELLSPERNFKNYREALSSCNLPPCVPFLG 160 (242)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHhCChHHhhhHHHHHHCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCccchH
Confidence 99999999999999999999999999999999999999999999999999998 5689999999999998 99999999
Q ss_pred hhHhHHHHHHhcCCCCCCCCCcccHHHHHHHHHHHHHHHHHhcCCCCCCCc-hHHHHHHHhcCCCCCCCchhhHHHHHHH
Q psy17173 935 MYLTNILHIEEGNPDFLPDSKLINFTKRRKVAEIISEIQQYQNEPYCLSVV-PIYREFFENLSPFEGIDDNEMCNILFEQ 1013 (1108)
Q Consensus 935 v~L~DL~~i~egnp~~~~~~~lINf~K~r~i~~ii~~i~~~Q~~~Y~~~~~-~~i~~~l~~l~~~~~~~e~e~~d~ly~~ 1013 (1108)
++|+||+++++|+|++.+ +|+|||.|+++++++|.+++.||+.+|+|.++ +.||.++.++. ..+++ +|.+|++
T Consensus 161 ~~l~dl~~~~~~~~~~~~-~~~iNf~k~~~i~~~i~~~~~~Q~~~y~~~~~~~~iq~~l~~~~--~~~~~---~~~~~~~ 234 (242)
T smart00147 161 VLLKDLTFIDEGNPDFLE-NGLVNFEKRRKIAEILREIRQLQSQPYNLRPNRSDIQSLLQQLL--DHLDE---EEELYQL 234 (242)
T ss_pred HHHHHHHHHHccCccccc-CCcccHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHH--hhcCC---HHHHHHH
Confidence 999999999999999985 48999999999999999999999999999999 99999999862 23333 2469999
Q ss_pred hhhccCCC
Q psy17173 1014 SLLIEPRH 1021 (1108)
Q Consensus 1014 Sl~iEPr~ 1021 (1108)
|+++|||.
T Consensus 235 S~~~EP~~ 242 (242)
T smart00147 235 SLKIEPRV 242 (242)
T ss_pred HHHhCCCC
Confidence 99999984
No 3
>cd00155 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases. Small GTP-binding proteins of the Ras superfamily function as molecular switches in fundamental events such as signal transduction, cytoskeleton dynamics and intracellular trafficking. Guanine-nucleotide-exchange factors (GEFs) positively regulate these GTP-binding proteins in response to a variety of signals. GEFs catalyze the dissociation of GDP from the inactive GTP-binding proteins. GTP can then bind and induce structural changes that allow interaction with effectors.
Probab=100.00 E-value=1.1e-46 Score=412.19 Aligned_cols=232 Identities=39% Similarity=0.720 Sum_probs=218.0
Q ss_pred ccccCHHHHHHHHhHHHHHHhcCCChhhhhcccccCCCCC-CCCchHHHHHHHHhhHhhHHHHHhcCCCCHHHHHHHHHH
Q psy17173 779 ILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKA-EYSPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMTR 857 (1108)
Q Consensus 779 ll~~~p~eiA~QLTl~e~~lf~~I~~~Ell~~~w~k~~~~-~~~pni~~~i~~fn~ls~wv~~~IL~~~~~~~Ra~~i~k 857 (1108)
++++||.+||+|||++|+++|++|+|.||++..|.+..+. +.+|+|.+++++||.++.||+.+||.++++++|++++++
T Consensus 1 ~l~~d~~eiA~QlTl~~~~lf~~I~~~El~~~~~~~~~~~~~~~p~i~~~~~~~n~ls~wv~~~Il~~~~~~~R~~~i~~ 80 (237)
T cd00155 1 FLSLDPKELAEQLTLLDFELFRKIEPFELLGSLWSKKDKNIHLSPNLERFIERFNNLSNWVASEILLCTNPKKRARLLSK 80 (237)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 5789999999999999999999999999999999887655 379999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCChhHHHHHHHhhcccccccchhhhhcCChHHHHHHHHHHhh--hhhhHHHHHHHHhcC--CCCcccch
Q psy17173 858 IIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDAREL--NGDHFKKYQEKLRNI--NPPCIPFF 933 (1108)
Q Consensus 858 fI~vA~~~~~l~NFns~~aI~sgL~s~~I~RLk~Tw~~l~~~~~k~l~~l~~l--~~~n~~~yR~~l~~~--~~p~IPfl 933 (1108)
||+||.+|+++||||+++||++||++++|.||++||+.|+++.++.+++|..+ .++||++||+.++++ .+|||||+
T Consensus 81 ~I~ia~~l~~l~Nfns~~aI~~~L~~~~I~RL~~tw~~l~~~~~~~~~~l~~l~~~~~n~~~yr~~l~~~~~~~p~IP~l 160 (237)
T cd00155 81 FIQVAKHCRELNNFNSLMAIVSALSSSPISRLKKTWEVLSSKLKKLFEELEELVDPSRNFKNYRKLLKSVGPNPPCVPFL 160 (237)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHhCCccchhHHHHHHHCCHHHHHHHHHHHHHhCcHhhHHHHHHHHHhcCCCCCCeeeh
Confidence 99999999999999999999999999999999999999999999999999998 468999999999999 89999999
Q ss_pred hhhHhHHHHHHhcCCCCCCCCCcccHHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHhcCCCCCCCchhhHHHHHHH
Q psy17173 934 GMYLTNILHIEEGNPDFLPDSKLINFTKRRKVAEIISEIQQYQNEPYCLSVVPIYREFFENLSPFEGIDDNEMCNILFEQ 1013 (1108)
Q Consensus 934 Gv~L~DL~~i~egnp~~~~~~~lINf~K~r~i~~ii~~i~~~Q~~~Y~~~~~~~i~~~l~~l~~~~~~~e~e~~d~ly~~ 1013 (1108)
|+||+||+++++|+|++.+ +++|||.|++++++++.++.+||+.+|.+.+++.||.||.++.. ..++ +|++|++
T Consensus 161 g~~l~dl~~~~e~~~~~~~-~~~iN~~K~~~i~~~i~~~~~~Q~~~Y~~~~~~~iq~~l~~~~~-~~~~----~~~l~~~ 234 (237)
T cd00155 161 GVYLKDLTFLHEGNPDFLE-GNLVNFEKRRKIAEILREIRQLQSNSYELNRDEDILAFLWKLLE-LILN----EDELYEL 234 (237)
T ss_pred hHHHHHHHHHHccCCccCc-CCCccHHHHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHhccc-cCCC----HHHHHHH
Confidence 9999999999999999986 48999999999999999999999999999999999999998753 2233 3669999
Q ss_pred hhh
Q psy17173 1014 SLL 1016 (1108)
Q Consensus 1014 Sl~ 1016 (1108)
|++
T Consensus 235 Sl~ 237 (237)
T cd00155 235 SLE 237 (237)
T ss_pred hcC
Confidence 985
No 4
>KOG4424|consensus
Probab=100.00 E-value=3.5e-42 Score=388.74 Aligned_cols=299 Identities=16% Similarity=0.351 Sum_probs=264.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHhHhhhccCHHHHHHHHHH-HHHHHHHhhccCCCCCcchhH
Q psy17173 210 YEQVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVC-LLGAVEDISEMSSDDHCIGSC 288 (1108)
Q Consensus 210 y~evi~ELi~TEr~Yv~~L~~ii~~f~~pl~~~~~l~~~~~i~~IFsNIeeI~~~~~~-fL~~Le~~~~~~~~~~~IG~~ 288 (1108)
...+++||+.||+.||+.|..+.++|+.+|.... ..+.+.+..|||||..||.||.. ||..|+.+. ||++
T Consensus 67 ~~~iaqEll~tE~~Yv~~L~lLd~~F~~~L~~~~-~~~~~~v~~lf~nIssi~~fh~qfllp~l~~r~--------Iadv 137 (623)
T KOG4424|consen 67 LRHIAQELLDTERTYVKRLHLLDQVFCRRLLEEA-SIPADVITGLFGNISSIHNFHGQFLLPELEKRI--------IADV 137 (623)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhhH--------HHHH
Confidence 3459999999999999999999999999998877 45569999999999999999965 566666554 9999
Q ss_pred HHhhhhcccchhHHHHHhhhccHHHHHHHHHHhcC-hhhHHHHHHhcccccccccccccccccccccchHhHHHHHHHHH
Q psy17173 289 FEEFAEDAEFDVYEKLLHNIVNQKSIEVLSMHVTQ-PSILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYIKIFH 367 (1108)
Q Consensus 289 F~~~a~~~~f~~Y~~Yc~N~~~~~a~~~l~~l~~~-~~~~~~~~~~~~~~~~~~~~~L~slLi~PvQRI~rY~LLLkeLl 367 (1108)
|.++| +.|++|++|++|| +.|.+.++.+.++ |.|...+.+ .+..++|..++|+++||.||||||||.|||++++
T Consensus 138 ~qKlA--PFLKmYseY~kny--drA~~L~~~lt~rsp~F~~vl~~-Iek~~~cg~l~LqhhMiePVQRIPRYeLLLk~yl 212 (623)
T KOG4424|consen 138 FQKLA--PFLKMYSEYAKNY--DRALKLFQTLTSRSPQFRKVVEE-IEKQPECGGLKLQHHMIEPVQRVPRYELLLQDYL 212 (623)
T ss_pred HHHhh--hHHHHHHHHHhcc--hhHHHHHHHHHhhChHHHHHHHH-HhhchhcCCccchhheechhhhhhHHHHHHHHHH
Confidence 99997 5589999999999 7999999999988 777666654 6777889999999999999999999999999999
Q ss_pred hcCCCCc-hHHHHHHHHHHHHHHHHHHhhhhhhhcCcccccchhhhhhhHHHHHHHHHHHhhccCCCcccccccccceee
Q psy17173 368 SLTDSSK-DKECLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKNVDGVDVRDLRPYLEEFYR 446 (1108)
Q Consensus 368 K~Tp~~h-D~~~L~~A~~~~~~v~~~ine~~~~k~~~~~~~~~~e~~rk~~~~~kl~eiq~~I~g~~~~~l~~~~r~li~ 446 (1108)
+++|++. |+.+++.|++.|...++++|.+ ++++++.+++.++|+.+.+ ..+|..|+|+||+
T Consensus 213 ~~lp~~d~D~~d~~ksLe~I~~aA~HsNaa----------------i~k~E~~~kLlevqe~LG~--e~dIV~PsreLiK 274 (623)
T KOG4424|consen 213 LYLPPDDPDYKDLKKSLELISTAASHSNAA----------------ITKMERLQKLLEVQEQLGN--EEDIVSPSRELIK 274 (623)
T ss_pred HhCCCCCcchHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHhCC--CccccCcHHHHhh
Confidence 9999999 9999999999999999999998 6899999999999999976 4788889999999
Q ss_pred eeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCccccccEEeec
Q psy17173 447 EDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNAFEIAP 526 (1108)
Q Consensus 447 eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~~aF~I~~ 526 (1108)
||.+.|++.+.....+||+|||||++++|+++... .+.+|....++.++.+.+.+... .+..+.|.+.+
T Consensus 275 EG~l~Kis~k~~~~qeRylfLFNd~~lyc~~r~~~----------~~~k~~~r~~~s~~~~~v~~~~~-~~~~~tF~~~G 343 (623)
T KOG4424|consen 275 EGQLQKISAKNGTTQERYLFLFNDILLYCKPRKRL----------PGSKYEVRARCSISHMQVQEDDN-EELPHTFILTG 343 (623)
T ss_pred ccceeeeeccCCCcceeEEEEehhHHHhhhhhhhc----------ccceeccceeeccCcchhccccc-ccCCceEEEec
Confidence 99999999875555799999999999999998743 23588889999999988865443 35789999998
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17173 527 RDQPSIIIVTKSPEDKKSWFSDLIMV 552 (1108)
Q Consensus 527 ~~~~~~~l~a~s~eeK~~Wm~~L~~l 552 (1108)
+ +.++.|.|.|.++|+.|+++|...
T Consensus 344 ~-~r~vel~a~t~~ek~eWv~~I~~~ 368 (623)
T KOG4424|consen 344 K-KRGVELQARTEQEKKEWVQAIQDA 368 (623)
T ss_pred c-cceEEeecCchhhHHHHHHHHHHH
Confidence 6 568999999999999999999887
No 5
>KOG2996|consensus
Probab=100.00 E-value=1.4e-39 Score=363.06 Aligned_cols=298 Identities=19% Similarity=0.315 Sum_probs=244.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHhHhhhccCHHHHHHHHHHHHHHHHHhhccCCCCCcchhHHHh
Q psy17173 212 QVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCLLGAVEDISEMSSDDHCIGSCFEE 291 (1108)
Q Consensus 212 evi~ELi~TEr~Yv~~L~~ii~~f~~pl~~~~~l~~~~~i~~IFsNIeeI~~~~~~fL~~Le~~~~~~~~~~~IG~~F~~ 291 (1108)
-.++||.+||..|++.|..|++.|++||+.- .++.|+..||.|||||..+|+.||++++..+..... +.+|.+|++
T Consensus 200 cClrEi~~TE~kY~~tL~sI~k~f~~PLk~~---l~~ad~~ivFiNieel~klHt~ll~ei~~sv~v~~~-qtl~qVFik 275 (865)
T KOG2996|consen 200 CCLREIQQTEEKYTQTLESIEKTFMEPLKRF---LPPADYNIVFINIEELNKLHTALLAEIEYSVKVAGG-QTLYQVFIK 275 (865)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChhhhheeEecHHHHHHHHHHHHHHhHHHhhCCCc-ccHHHHHHH
Confidence 3899999999999999999999999999864 335899999999999999999999999999988766 899999999
Q ss_pred hhhcccchhHHHHHhhhccHHHHHHHHHHhcChhhH-HHHHHhcccccccccccccccccccccchHhHHHHHHHHHhcC
Q psy17173 292 FAEDAEFDVYEKLLHNIVNQKSIEVLSMHVTQPSIL-NTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYIKIFHSLT 370 (1108)
Q Consensus 292 ~a~~~~f~~Y~~Yc~N~~~~~a~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~~L~slLi~PvQRI~rY~LLLkeLlK~T 370 (1108)
+. .+|-+|+.||+|. +.|+..++++++..+.. ..+++ |.......++.|.++|..||||++||+||||||+|||
T Consensus 276 yk--er~liYG~YCS~~--e~a~k~ln~llktrEdv~~kleE-ct~r~nngkF~l~DLL~VPmQRvlKYhLLLkEL~kht 350 (865)
T KOG2996|consen 276 YK--ERLLIYGKYCSNV--ESARKLLNELLKTREDVSRKLEE-CTARANNGKFTLRDLLVVPMQRVLKYHLLLKELVKHT 350 (865)
T ss_pred HH--HHHhhhhhhhccc--hHHHHHHHHHHHHhHHHHHHHHH-HHhhhcCCceeeceeeeeeHHHHHHHHHHHHHHHHhc
Confidence 94 5699999999999 59999999999765544 44443 4444555689999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHhhhhhhhcCcccccchhhhhhhHHHHHHHHHHHhhccCCCc--ccccccccceeeee
Q psy17173 371 DSSKDKECLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKNVDGVDV--RDLRPYLEEFYRED 448 (1108)
Q Consensus 371 p~~hD~~~L~~A~~~~~~v~~~ine~~~~k~~~~~~~~~~e~~rk~~~~~kl~eiq~~I~g~~~--~~l~~~~r~li~eG 448 (1108)
.+..+.++|+.|+++|++++.+|||. +|+.+.+..+.++|.+|++... .+.| +---+|
T Consensus 351 ~~a~ek~~LkeAleaM~Dla~yiNEv----------------kRD~etlr~I~efq~SIenL~~pl~~~G----RpkiDG 410 (865)
T KOG2996|consen 351 DEASEKRNLKEALEAMEDLAQYINEV----------------KRDNETLRVIDEFQLSIENLSQPLHDFG----RPKIDG 410 (865)
T ss_pred ccCChhhhHHHHHHHHHHHHHHHhHh----------------hcchHHHHHHHHHHHhHHhhcchHHHhC----CCCcCc
Confidence 98887779999999999999999987 6777777899999999998765 4444 444578
Q ss_pred eeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCC---------Ccccc
Q psy17173 449 TLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYEN---------TDDIK 519 (1108)
Q Consensus 449 ~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d---------~~~~~ 519 (1108)
++...+......++||+||||.++|+||++.. .|.+++.+.+....+.|.+- +-.++
T Consensus 411 Elki~s~~~~tkqdRyiFLfDkvviVCKrkG~--------------sy~lke~i~l~~y~m~d~~~~~kd~kk~~~~~ws 476 (865)
T KOG2996|consen 411 ELKITSTQAHTKQDRYIFLFDKVVIVCKRKGD--------------SYELKEIIYLNAYKMSDDPIDDKDNKKVSTITWS 476 (865)
T ss_pred eEEEeehhcCCccceEEeEecceEEEeeccCc--------------chhHHHHHHHHhhccccCCCCchhhhhccceeee
Confidence 88866553333369999999999999998754 56666655555555444331 22256
Q ss_pred ccEEee-cCCCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17173 520 NAFEIA-PRDQPSIIIVTKSPEDKKSWFSDLIMV 552 (1108)
Q Consensus 520 ~aF~I~-~~~~~~~~l~a~s~eeK~~Wm~~L~~l 552 (1108)
+.|.|. .++...+.|+|+|.+-|+.||+++.|.
T Consensus 477 ~~f~lI~tqg~ngl~fy~Kte~~kkkWmeqfema 510 (865)
T KOG2996|consen 477 YGFYLIHTQGRNGLEFYCKTEDLKKKWMEQFEMA 510 (865)
T ss_pred eeEEEEEEcCCcceEEEEecHHHHHHHHHHHHHH
Confidence 788877 455668999999999999999999764
No 6
>KOG3542|consensus
Probab=100.00 E-value=2.5e-38 Score=356.38 Aligned_cols=200 Identities=28% Similarity=0.512 Sum_probs=185.7
Q ss_pred cccccCHHHHHHHHhHHHHHHhcCCChhhhhcccccCCCCCCCCchHHHHHHHHhhHhhHHHHHhcCCCCHHHHHHHHHH
Q psy17173 778 NILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMTR 857 (1108)
Q Consensus 778 ~ll~~~p~eiA~QLTl~e~~lf~~I~~~Ell~~~w~k~~~~~~~pni~~~i~~fn~ls~wv~~~IL~~~~~~~Ra~~i~k 857 (1108)
.++.++..|+|.|||+-||++|++|.|.|++...+. -+.+..+|++.++-+.||+-+.||+++||.+.+..+|+++|++
T Consensus 863 slLqLst~eVAtQLsmrdF~lFrnIEPTEyiDdLFK-L~SKtg~~~LkrFE~l~NqEtfWVAsEIltE~nqlKRmKiIKh 941 (1283)
T KOG3542|consen 863 SLLQLSTQEVATQLSMRDFSLFRNIEPTEYIDDLFK-LDSKTGSPKLKRFEQLFNQETFWVASEILTERNQLKRMKIIKH 941 (1283)
T ss_pred hHhhhHHHHHHHHhhhhhhhhHhcCChHHHHHHHHh-hccccCCccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999987763 3334568999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCChhHHHHHHHhhcccccccchhhhhcCChHHHHHHHHHHhh--hhhhHHHHHHHHhcC--CCCcccch
Q psy17173 858 IIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDAREL--NGDHFKKYQEKLRNI--NPPCIPFF 933 (1108)
Q Consensus 858 fI~vA~~~~~l~NFns~~aI~sgL~s~~I~RLk~Tw~~l~~~~~k~l~~l~~l--~~~n~~~yR~~l~~~--~~p~IPfl 933 (1108)
||+||.+|++++|||+++||++||+-++|.||+.||+.+|.|+.+.|++++.| ++.|+.+||..|.+. .||.||.+
T Consensus 942 FIKiAlhCReckNFNSMFAIiSGLnla~VaRLr~tWEklpsKYek~lqdlqdlfDPSRNMaKYRn~L~sq~~qPPiiPlf 1021 (1283)
T KOG3542|consen 942 FIKIALHCRECKNFNSMFAIISGLNLAAVARLRSTWEKLPSKYEKMLQDLQDLFDPSRNMAKYRNHLASQAQQPPIIPLF 1021 (1283)
T ss_pred HHHHHHHHHHhcchhhHHHHHhcCchHHHHHHhhhHhhccHHHHHHHHHHHHhhCchhhHHHHHHHHHhhccCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999 679999999999764 79999999
Q ss_pred hhhHhHHHHHHhcCCCCCCCCCcccHHHHHHHHHHHHHHHHHhcCCC
Q psy17173 934 GMYLTNILHIEEGNPDFLPDSKLINFTKRRKVAEIISEIQQYQNEPY 980 (1108)
Q Consensus 934 Gv~L~DL~~i~egnp~~~~~~~lINf~K~r~i~~ii~~i~~~Q~~~Y 980 (1108)
.++-+||+|++|||.++.+ |||||+|+|+|++-|..+.+.-+.+|
T Consensus 1022 PViKKDlTFlHeGNdskvd--gLvNFEKLRmIaKeIR~V~rmsSanm 1066 (1283)
T KOG3542|consen 1022 PVIKKDLTFLHEGNDSKVD--GLVNFEKLRMIAKEIRGVMRMSSANM 1066 (1283)
T ss_pred hheeccceeeecCCchhhh--ccccHHHHHHHHHHHHHHHhhccCCC
Confidence 9999999999999999986 79999999999999998877665544
No 7
>KOG2378|consensus
Probab=100.00 E-value=3.3e-38 Score=345.30 Aligned_cols=390 Identities=21% Similarity=0.338 Sum_probs=293.4
Q ss_pred ccccccCHHHHHHHHccC----CCCC--hhHHHHHHHhccccCCHHHHHHHHHHhcCCCCCCcccccCccchhhhhhHHH
Q psy17173 605 PLIKGATLHKLIERLTYH----IYAD--PAFIGTFLTTYRSFTTPTELLDLLIDRFNVPDPNKVFENNNADIEESILRED 678 (1108)
Q Consensus 605 ~~IkagTL~kLIe~Lt~~----~~~D--~~f~~~FLlTyrsFttp~~LL~~Li~Ry~~~~~~~~~~~~~~~~~~~~~~~~ 678 (1108)
-.|.+||.+|+.|.|... ...| ..|++-|++||+-|++..+|-+.|...|...+-...+++. ..
T Consensus 68 YtVmsGtpEKILE~lLe~~lda~~dd~tdt~l~DFilth~vFMp~~~lC~aL~~hy~~~p~~g~e~~~----------~~ 137 (573)
T KOG2378|consen 68 YTVMSGTPEKILEHLLETRLDALGDDITDTFLEDFILTHDVFMPDNQLCNALLSHYHATPYQGTEQEI----------TV 137 (573)
T ss_pred eEEecCCHHHHHHHHHhhchhhhccchHHHHHHHHHHHhhhccCcHHHHHHHHHHhccCcCCCchhhh----------hh
Confidence 367899999999999754 1222 4699999999999999999999999999876543211110 00
Q ss_pred HHHHhhhccchhhhHHHHHHHHHHhhcccccccCHHHHHHHHHHHhhhccCc----hhHHHHHH----------------
Q psy17173 679 IIRYKKELCQPVQFRVLNVFRQWVQHHFYDFQRDQNLLEKLKSFLLNEISGK----SLRKWADI---------------- 738 (1108)
Q Consensus 679 ~~~~~~~~~~~vq~rVl~vl~~Wi~~~~~DF~~d~~ll~~L~~Fl~~~v~~~----~~~k~~~~---------------- 738 (1108)
-.-+.||+.++.+|+.-+..-+..|+..-.-|+.+....+... .++++.+.
T Consensus 138 ---------~r~Kr~vl~lv~qw~aly~~~l~ed~va~~fl~~ly~~V~dD~~~~~l~E~~l~~~~~i~~~~~~~~~~pq 208 (573)
T KOG2378|consen 138 ---------VRCKRRVLRLVSQWCALYGDLLQEDPVANSFLEELYCLVIDDRRLYGLREDILERIQSIRLSTRENNQSPQ 208 (573)
T ss_pred ---------HhHHHHHHHHHHHHHHHHhhhcccChhHHHHHHHHHHHHhhhHHhhhhhHHHHHHHHHHhccccccccChh
Confidence 0124689999999999887666667644333333332111110 11111111
Q ss_pred ----------------------------------------------------HHHHHHHhhhhhhhhh--hcccCC----
Q psy17173 739 ----------------------------------------------------VLNLIQRKELDLEKEI--TFAFNN---- 760 (1108)
Q Consensus 739 ----------------------------------------------------l~~~l~r~~~~~~~~~--~~~~~~---- 760 (1108)
|...+.++.+-++..+ ..+++.
T Consensus 209 kk~k~L~~~f~~~d~~~tr~~v~~sDev~~~vy~~Dhsy~tl~~~vs~svqEI~~~va~k~~~seel~LV~v~s~GEkv~ 288 (573)
T KOG2378|consen 209 KKHKALFLQFGVLDEALTRCPVRGSDEVFCIVYLPDHSYVTLRIRVSASVQEILEAVAEKLGYSEELILVKVSSSGEKVI 288 (573)
T ss_pred hhcchHHHhccchhhccccCCccCCCeeeEEEEecCceEEEEEeechhHHHHHHHHHHHHhccccceeEEEEccCCceee
Confidence 1111111111000000 000000
Q ss_pred -CCCC--------------------ccccccCCCC-----ccccccccCHHHHHHHHhHHHHHHhcCCChhhhhcccccC
Q psy17173 761 -SPPP--------------------IEVHVPINSI-----DEFNILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTK 814 (1108)
Q Consensus 761 -~pp~--------------------i~~~~~~p~~-----~~~~ll~~~p~eiA~QLTl~e~~lf~~I~~~Ell~~~w~k 814 (1108)
.|.. ++.-.+.|.. ..-.|.-+++.++|.|||++||.+|+.|+-.|++.++..+
T Consensus 289 lqPnd~~v~tsL~ln~rLfv~~re~~~~LvP~peq~gpt~g~~~l~lv~s~dlA~qLt~fdw~Lfnsih~~ElI~y~i~~ 368 (573)
T KOG2378|consen 289 LQPNDRAVFTSLGLNSRLFVVNREEIDLLVPLPEQEGPTPGSSILHLVSSKDLAHQLTLFDWSLFNSIHENELIHYVIGG 368 (573)
T ss_pred ecCCcceeeeeecccceEEEEchHhhhhcCCChhhcCCCCCcceeeeccHHHHHHHHHHHHHHHHhhhhHhHhhHhhhcc
Confidence 0000 0000111211 2234556899999999999999999999999999998874
Q ss_pred C-CCCCCCchHHHHHHHHhhHhhHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHhhcccccccchhhh
Q psy17173 815 K-NKAEYSPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTF 893 (1108)
Q Consensus 815 ~-~~~~~~pni~~~i~~fn~ls~wv~~~IL~~~~~~~Ra~~i~kfI~vA~~~~~l~NFns~~aI~sgL~s~~I~RLk~Tw 893 (1108)
. .....+-|+..+..+||.+..||+++|+-+..+..|+++++|||++|.+|++..|.++++||+.||++.+|+||..||
T Consensus 369 q~~~~~~tanleLl~~R~neVq~wv~tei~lc~ql~kr~qllkkfiKiaal~ke~~~l~sffAV~~GL~~~avSrl~~tw 448 (573)
T KOG2378|consen 369 QIPCDRNTANLELLLRRFNEVQHWVATEILLCQQLGKRCQLLKKFIKIAALCKEGENLNSFFAVVMGLSNRAVSRLDLTW 448 (573)
T ss_pred cCCCCccchhHHHHHHHHhhchhhhhchhhhhcchhHHHHHHHHHHHHHHHHHhhccccchHHHhhcchhHHHHhhhccc
Confidence 3 334457899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHhh--hhhhHHHHHHHHhcCCCCcccchhhhHhHHHHHHhcCCCCCCCCCcccHHHHHHHHHHHHH
Q psy17173 894 QALPTRLQKVLEDAREL--NGDHFKKYQEKLRNINPPCIPFFGMYLTNILHIEEGNPDFLPDSKLINFTKRRKVAEIISE 971 (1108)
Q Consensus 894 ~~l~~~~~k~l~~l~~l--~~~n~~~yR~~l~~~~~p~IPflGv~L~DL~~i~egnp~~~~~~~lINf~K~r~i~~ii~~ 971 (1108)
+.+|.+.++.++++.++ +..|++.||...+...||.|||+...|+|++|+++||.++++ |+|||+|+++++++.+.
T Consensus 449 eklP~k~kk~~s~~enl~dP~~nhr~yR~l~~km~pp~ipf~PlllkD~tf~heGnkt~v~--glVNfEKmhmiA~~~Rt 526 (573)
T KOG2378|consen 449 EKLPYKFKKLFSELENLLDPCRNHRTYRLLSSKMSPPYIPFMPLLLKDLTFIHEGNKTFVD--GLVNFEKMHMIAKTART 526 (573)
T ss_pred ccCchHHHhHHHHHHhcCCchhhhHHHHHHHHhcCCCCCCccchhhhhceeeccchHHHHh--cchhHHHHHHHHHHHHH
Confidence 99999999999999998 678999999999999999999999999999999999999996 79999999999999999
Q ss_pred HHHHhcCCCCC-CCc--hHHHHHHHhcCCCCCCCchhhHHHHHHHhhhccCCC
Q psy17173 972 IQQYQNEPYCL-SVV--PIYREFFENLSPFEGIDDNEMCNILFEQSLLIEPRH 1021 (1108)
Q Consensus 972 i~~~Q~~~Y~~-~~~--~~i~~~l~~l~~~~~~~e~e~~d~ly~~Sl~iEPr~ 1021 (1108)
+++|.++|++- .+. .+.++|+.++..++ ++..|+++|+++|||.
T Consensus 527 ~r~cRS~p~~~~a~~~h~e~rSyVrql~VID------nQ~~L~qLS~~lEpr~ 573 (573)
T KOG2378|consen 527 LRHCRSQPLNPGAPHEHQETRSYVRQLRVID------NQRKLSQLSYELEPRS 573 (573)
T ss_pred HHHHhcCCCCCCCcccchhHHHHHhhHeeec------cHHHHHHHhhhcCCCC
Confidence 99999999883 332 46788998876543 2578999999999983
No 8
>PF00617 RasGEF: RasGEF domain; InterPro: IPR001895 Ras proteins are membrane-associated molecular switches that bind GTP and GDP and slowly hydrolyze GTP to GDP []. The balance between the GTP bound (active) and GDP bound (inactive) states is regulated by the opposite action of proteins activating the GTPase activity and that of proteins which promote the loss of bound GDP and the uptake of fresh GTP [, ]. The latter proteins are known as guanine-nucleotide dissociation stimulators (GDSs) (or also as guanine-nucleotide releasing (or exchange) factors (GRFs)). Proteins that act as GDS can be classified into at least two families, on the basis of sequence similarities, the CDC24 family (see IPR001331 from INTERPRO) and the CDC25 family. The size of the proteins of the CDC25 family range from 309 residues (LTE1) to 1596 residues (sos). The sequence similarity shared by all these proteins is limited to a region of about 250 amino acids generally located in their C-terminal section (currently the only exceptions are sos and ralGDS where this domain makes up the central part of the protein). This domain has been shown, in CDC25 an SCD25, to be essential for the activity of these proteins.; GO: 0005085 guanyl-nucleotide exchange factor activity, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IJE_S 3T6G_A 1NVW_S 1BKD_S 1XDV_A 2II0_A 1NVU_S 1NVX_S 1NVV_S 1XD4_B ....
Probab=100.00 E-value=2.8e-39 Score=341.02 Aligned_cols=184 Identities=43% Similarity=0.785 Sum_probs=168.9
Q ss_pred cccCHHHHHHHHhHHHHHHhcCCChhhhhcccccCCCCCC-CCchHHHHHHHHhhHhhHHHHHhcCCCCHHHHHHHHHHH
Q psy17173 780 LIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAE-YSPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMTRI 858 (1108)
Q Consensus 780 l~~~p~eiA~QLTl~e~~lf~~I~~~Ell~~~w~k~~~~~-~~pni~~~i~~fn~ls~wv~~~IL~~~~~~~Ra~~i~kf 858 (1108)
++++|.+||+|||++|+++|++|+|.|++...|.+.+... .+|++.+++++||.+++||..+||.++++++|++++++|
T Consensus 1 ~~~~~~~iA~qlt~~~~~lf~~I~~~e~~~~~~~~~~~~~~~~~~i~~~~~~~n~ls~wv~~~Il~~~~~~~R~~~i~~~ 80 (188)
T PF00617_consen 1 LDIDPEEIARQLTLLDSELFRKIKPSELLYSVWSKSDKKENQSPNINKLIDRFNKLSNWVISEILSQPDPEERAKIIEKF 80 (188)
T ss_dssp -CS-HHHHHHHHHHHHHHHHHTSSHHHHHGGGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCCccChhHHHHHHHhhhHHHHHHHHhhccccHHHHHHHHHHH
Confidence 5789999999999999999999999999999998754332 489999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCChhHHHHHHHhhcccccccchhhhhcCChHHHHHHHHHHhh--hhhhHHHHHHHHhcCCC-Ccccchhh
Q psy17173 859 IEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDAREL--NGDHFKKYQEKLRNINP-PCIPFFGM 935 (1108)
Q Consensus 859 I~vA~~~~~l~NFns~~aI~sgL~s~~I~RLk~Tw~~l~~~~~k~l~~l~~l--~~~n~~~yR~~l~~~~~-p~IPflGv 935 (1108)
|+||.+|+++|||+|+|||++||++++|.||++||+.++++.++.++++..+ +++||++||.+++++++ |||||+|+
T Consensus 81 I~va~~l~~l~Nf~s~~aI~~~L~s~~i~rL~~tw~~l~~~~~~~~~~l~~l~~~~~~~~~yr~~~~~~~~~~~IP~lg~ 160 (188)
T PF00617_consen 81 IQVAKKLYELGNFNSLMAILSALNSSSIQRLKKTWKSLSKKSKKTFEELESLFSPSNNYKNYREALKKCNPQPCIPFLGI 160 (188)
T ss_dssp HHHHHHHHHTTBHHHHHHHHHHHTSHHHHT-HHHHHTSHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTSTSSSSB--HHH
T ss_pred HhHHHHHHHhcCchHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHhhcccchhhHHHHHhhcccccCceecccHH
Confidence 9999999999999999999999999999999999999999999999999998 57899999999998887 99999999
Q ss_pred hHhHHHHHHhcCCCCCCCCCcccHHHHHH
Q psy17173 936 YLTNILHIEEGNPDFLPDSKLINFTKRRK 964 (1108)
Q Consensus 936 ~L~DL~~i~egnp~~~~~~~lINf~K~r~ 964 (1108)
||+||+++++|+|+++++ ++|||.|+|+
T Consensus 161 ~l~dl~~~~~~~~~~~~~-~liN~~K~r~ 188 (188)
T PF00617_consen 161 FLKDLIFIEEGNPDFIDD-GLINFEKCRK 188 (188)
T ss_dssp HHHHHHHHHHHS-SECTT-TCEEHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCC-ccCCcccccC
Confidence 999999999999999974 6999999985
No 9
>KOG3518|consensus
Probab=100.00 E-value=3.4e-37 Score=325.15 Aligned_cols=300 Identities=18% Similarity=0.319 Sum_probs=249.9
Q ss_pred ccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCC-CCHHhHhhhccCHHHHHHHHHHHHHHHHHhhccCCCCCc
Q psy17173 208 LHYEQ-VVNDFVAEEKLFIRELKLILKIFYEELNKI-TPL-KEIKEVHSLFEIIEEIYNLTVCLLGAVEDISEMSSDDHC 284 (1108)
Q Consensus 208 ~sy~e-vi~ELi~TEr~Yv~~L~~ii~~f~~pl~~~-~~l-~~~~~i~~IFsNIeeI~~~~~~fL~~Le~~~~~~~~~~~ 284 (1108)
+.|-+ |+.||++|||+||+||+.|++.|+.-++.. .++ ..-+.+..+||||++|+.||..++.+|+.+-... ..
T Consensus 119 l~~ldriaieildtertyvedl~aiie~yld~i~edqeklkl~ldaisalfg~ie~ifafnkel~n~ldaadld~---v~ 195 (521)
T KOG3518|consen 119 LLHLDRIAIEILDTERTYVEDLKAIIEDYLDCIREDQEKLKLGLDAISALFGCIEDIFAFNKELLNDLDAADLDC---VA 195 (521)
T ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhccCcHHHHHHHhhhHHHHHHHHHHHHHHHhhcccch---HH
Confidence 56654 999999999999999999999999999843 222 2348999999999999999999999999874443 55
Q ss_pred chhHHHhhhhcccchhHHHHHhhhccHHHHHHHHHHhcChhhHHHHHHhcccccccccccccccccccccchHhHHHHHH
Q psy17173 285 IGSCFEEFAEDAEFDVYEKLLHNIVNQKSIEVLSMHVTQPSILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYIK 364 (1108)
Q Consensus 285 IG~~F~~~a~~~~f~~Y~~Yc~N~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~slLi~PvQRI~rY~LLLk 364 (1108)
|..||.+- ..+|..|++||.|| +..+.+|..+++++-+..++++..+.. .+.++|.+||++|||||.||+|+|.
T Consensus 196 ia~cfve~--s~efe~yieyctny--~rmmatl~~~~q~~ilaka~qerq~al--~hsl~l~ayllkpvqrilkyhlfle 269 (521)
T KOG3518|consen 196 IAECFVEK--SEEFEDYIEYCTNY--HRMMATLTECMQNKILAKAFQERQEAL--KHSLPLGAYLLKPVQRILKYHLFLE 269 (521)
T ss_pred HHHHHHhc--chhHHHHHHHHhhh--HHHHHHHHHHHHhHHHHHHHHHHHHHH--hcccchhHHHHHHHHHHHHHHHHHH
Confidence 99999765 56799999999999 799999999999999999998744433 3458899999999999999999999
Q ss_pred HHHhcCCCC-c--hHHHHHHHHHHHHHHHHHHhhhhhhhcCcccccchhhhhhhHHHHHHHHHHHhhccCCCcccccc--
Q psy17173 365 IFHSLTDSS-K--DKECLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKNVDGVDVRDLRP-- 439 (1108)
Q Consensus 365 eLlK~Tp~~-h--D~~~L~~A~~~~~~v~~~ine~~~~k~~~~~~~~~~e~~rk~~~~~kl~eiq~~I~g~~~~~l~~-- 439 (1108)
+++||.+.+ | ++..+..|.+.|...+..||+. +++.+.++++.+||..+..|.+.++.-
T Consensus 270 ~i~k~l~~~thpeel~qvk~ahd~m~~qa~~inde----------------kkkaeh~erlgeiqs~lqkwkadeiqi~d 333 (521)
T KOG3518|consen 270 EIEKHLDKDTHPEELDQVKDAHDTMQRQAAHINDE----------------KKKAEHAERLGEIQSLLQKWKADEIQIPD 333 (521)
T ss_pred HHHhcCCCCCChHHHHHHHHHHHHHHHHHHHhcch----------------hHHHHHHHHHHHHHHHHHhcccccccCCc
Confidence 999999977 5 8899999999999999999998 789999999999999999999843322
Q ss_pred --cccceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCcc
Q psy17173 440 --YLEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDD 517 (1108)
Q Consensus 440 --~~r~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~ 517 (1108)
..+.|+.||++...+.+ .+|.+|||+.+|+++|++.. .|.+|..|...++.+++.--. .
T Consensus 334 lsaygdllleatfr~agak----~~rllflfdellli~kkr~a--------------nf~~k~~ilc~nlmlne~icp-e 394 (521)
T KOG3518|consen 334 LSAYGDLLLEATFRIAGAK----NERLLFLFDELLLITKKRDA--------------NFTCKAHILCGNLMLNEVICP-E 394 (521)
T ss_pred hhhhHHHHHHHHHHHhccc----ccchHHHHHhHHhheeecCC--------------ceeeehhhhccchhhheeccC-C
Confidence 26789999999877766 48999999999999998765 788888776666555443211 1
Q ss_pred ccccEEeecCCCC--eEEEEeCCHHHHHHHHHHHHH
Q psy17173 518 IKNAFEIAPRDQP--SIIIVTKSPEDKKSWFSDLIM 551 (1108)
Q Consensus 518 ~~~aF~I~~~~~~--~~~l~a~s~eeK~~Wm~~L~~ 551 (1108)
-.-.|++.+-+++ .++|.|+|.++|.-||..|..
T Consensus 395 eplsfqv~~fdnpkaq~~fma~sme~kr~wm~elkr 430 (521)
T KOG3518|consen 395 EPLSFQVFHFDNPKAQHTFMAKSMEDKRLWMLELKR 430 (521)
T ss_pred CCceeEEEecCCcchhhhhhhhhhHHHHHHHHHHHH
Confidence 2357888866554 699999999999999998854
No 10
>KOG2070|consensus
Probab=100.00 E-value=1.7e-34 Score=318.07 Aligned_cols=310 Identities=17% Similarity=0.307 Sum_probs=267.3
Q ss_pred ccccccccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHhHhhhccCHHHHHHHHHHHHHHHHHhhccCC
Q psy17173 202 QSNNVVLHYEQ-VVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCLLGAVEDISEMSS 280 (1108)
Q Consensus 202 ~~~~~~~sy~e-vi~ELi~TEr~Yv~~L~~ii~~f~~pl~~~~~l~~~~~i~~IFsNIeeI~~~~~~fL~~Le~~~~~~~ 280 (1108)
.+..+..+|+. |.+.||+||+.|+++|+.++..|+.||.....+++ .++..+.||+++|+.|++.|+.+||+|.+.+.
T Consensus 93 ~t~~~~~~Yr~vVLk~~lesEkey~~eLq~lL~t~L~Plq~s~iLs~-~ey~~LmgNfeeI~t~~qdL~~qlEec~~~~~ 171 (661)
T KOG2070|consen 93 DTTAINKSYRNVVLKNILESEKEYSKELQTLLSTYLRPLQTSEILSS-AEYSYLMGNFEEICTFQQDLVQQLEECTKLPE 171 (661)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccch-HHHHHHhcchHHhHhHHHHHHHHHHHhhcCch
Confidence 33344478888 78999999999999999999999999999888776 89999999999999999999999999998888
Q ss_pred CCCcchhHHHhhhhcccchhHHHHHhhhccHHHHHHHHHHhcChhhHHHHHHhcccccccccccccccccccccchHhHH
Q psy17173 281 DDHCIGSCFEEFAEDAEFDVYEKLLHNIVNQKSIEVLSMHVTQPSILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYF 360 (1108)
Q Consensus 281 ~~~~IG~~F~~~a~~~~f~~Y~~Yc~N~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~slLi~PvQRI~rY~ 360 (1108)
..++||.||+..|...+ .+|..||.|| |.|+.+|.+. ..++.++++..+...+. -+.|..-|.+|+.|+.||+
T Consensus 172 ~q~RVGg~fln~ap~mk-t~~~aYcanH--P~AV~VL~k~--~dELek~me~Qgasspg--~lvLttgLSkPfrrldkY~ 244 (661)
T KOG2070|consen 172 AQQRVGGCFLNLAPQMK-TLYLAYCANH--PSAVNVLTKH--SDELEKFMETQGASSPG--ILVLTTGLSKPFRRLDKYP 244 (661)
T ss_pred hhhhhhhHHHhhhHHHH-HHHHHHHhcC--chhhhHHHHh--HHHHHHHHHhcCCCCCC--eEEEecccchHHHHHHHHH
Confidence 88999999999886654 8999999999 8999999988 66788888876665332 2678889999999999999
Q ss_pred HHHHHHHhcCCCCc-hHHHHHHHHHHHHHHHHHHhhhhhhhcCcccccchhhhhhhHHHHHHHHHHHhhccCCCcccccc
Q psy17173 361 EYIKIFHSLTDSSK-DKECLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKNVDGVDVRDLRP 439 (1108)
Q Consensus 361 LLLkeLlK~Tp~~h-D~~~L~~A~~~~~~v~~~ine~~~~k~~~~~~~~~~e~~rk~~~~~kl~eiq~~I~g~~~~~l~~ 439 (1108)
-||+||.+|.++.| |+.|++.+..+++++...|.+. |++|... |+-+-..|.+|.|.|+..
T Consensus 245 ~lLQELERhme~~HpDrgD~qrs~avfk~~~~~Cq~l---------------RkqKEle---LqiLt~~i~~w~g~d~s~ 306 (661)
T KOG2070|consen 245 TLLQELERHMEDYHPDRGDIQRSMAVFKNLSAQCQEL---------------RKQKELE---LQILTEPIRNWEGDDIST 306 (661)
T ss_pred HHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHH---------------Hhhhhhh---hhhhcccccccccchhhh
Confidence 99999999999999 9999999999999999999776 4555553 344467889999977764
Q ss_pred cccceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCcccc
Q psy17173 440 YLEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIK 519 (1108)
Q Consensus 440 ~~r~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~ 519 (1108)
.+.+|+-|.+....++... +|||+.||.++|++....++++ .|.+.+++++.++.|+..+|++...
T Consensus 307 -lG~iiymg~v~Vqy~~ad~-~dRy~~LF~~~llflsvs~rMs------------~fIyegKlp~tG~iV~klEdte~~~ 372 (661)
T KOG2070|consen 307 -LGNIIYMGQVLVQYAGADE-KDRYLLLFPNVLLFLSVSPRMS------------GFIYEGKLPTTGMIVTKLEDTENHR 372 (661)
T ss_pred -ccceEeeeehhhhhcCcch-hhheeeeccceeeeeEeccccc------------hhhhccccccceeEEeehhhhhccc
Confidence 3467777777654443333 4999999999999999988876 6888889999999999999999999
Q ss_pred ccEEeecCCCCeEEEEeCCHHHHHHHHHHHHH
Q psy17173 520 NAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIM 551 (1108)
Q Consensus 520 ~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~ 551 (1108)
|+|+|.+..-..++..|.++.+-++|++++..
T Consensus 373 nafeis~~ti~rIv~~c~~~~~l~~wve~ln~ 404 (661)
T KOG2070|consen 373 NAFEISGSTIERIVVSCNNQQDLQEWVEHLNK 404 (661)
T ss_pred ccccccccchhheeeccCChHHHHHHHHHhhh
Confidence 99999987667899999999999999998864
No 11
>KOG3523|consensus
Probab=100.00 E-value=2.1e-34 Score=326.13 Aligned_cols=308 Identities=16% Similarity=0.222 Sum_probs=254.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHhHhhhccCHHHHHHHHHHHHHHHHHhhccCCCCCcchh
Q psy17173 208 LHYEQVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCLLGAVEDISEMSSDDHCIGS 287 (1108)
Q Consensus 208 ~sy~evi~ELi~TEr~Yv~~L~~ii~~f~~pl~~~~~l~~~~~i~~IFsNIeeI~~~~~~fL~~Le~~~~~~~~~~~IG~ 287 (1108)
...||+..|+|.+|.+|++.|++++..|+.--.-...+. +.|-+.+||||.++.+++..||.+||.+++.+.-...|.|
T Consensus 256 rklQEa~FEviTSEaSYl~SLnllv~hF~~s~~l~~~Ls-~~d~~~LFSni~~V~~~Serfl~dLE~r~e~ni~i~dicD 334 (695)
T KOG3523|consen 256 RKLQEAKFEVITSEASYLRSLNLLVDHFMNSKELRSTLS-ASDRHHLFSNIQDVREVSERFLCDLEARLEENIFIDDICD 334 (695)
T ss_pred HHHHhhhheeehhhHHHHHHHHHHHHHHhhhHHHHHhcC-hHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCchhhHHHH
Confidence 345789999999999999999999999998855444444 4899999999999999999999999999998866677999
Q ss_pred HHHhhhhcccchhHHHHHhhhccHHHHHHHHHHh-cChhhHHHHHHhcccccccccccccccccccccchHhHHHHHHHH
Q psy17173 288 CFEEFAEDAEFDVYEKLLHNIVNQKSIEVLSMHV-TQPSILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYIKIF 366 (1108)
Q Consensus 288 ~F~~~a~~~~f~~Y~~Yc~N~~~~~a~~~l~~l~-~~~~~~~~~~~~~~~~~~~~~~~L~slLi~PvQRI~rY~LLLkeL 366 (1108)
|..++|+ ..|.+|..||.|+. ---.++.+++ .++.|...+.. -+..+.|.+++|.||||.|||||+||+|||+.+
T Consensus 335 iv~~ha~-~~f~vYv~Y~tNQ~--YQeRT~qrL~~~n~~F~e~l~r-LE~~p~C~~Lpl~SFLiLPmQRITRL~LLl~nI 410 (695)
T KOG3523|consen 335 IVEDHAA-KHFSVYVKYCTNQV--YQERTLQRLLTENPAFREVLER-LESSPKCQGLPLRSFLILPMQRITRLPLLLDNI 410 (695)
T ss_pred HHHHhcc-cccceeehhccchH--HHHHHHHHHHhcChHHHHHHHH-HhcCccccCCCchhhhhchHHHHHHHHHHHHHH
Confidence 9999984 57999999999974 5566788887 45666655554 567788999999999999999999999999999
Q ss_pred HhcCCCCc-hHHHHHHHHHHHHHHHHHHhhhhhhhcCcccccchhhhhhhHHHHHHHHHHHhhccCCCc--ccccccccc
Q psy17173 367 HSLTDSSK-DKECLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKNVDGVDV--RDLRPYLEE 443 (1108)
Q Consensus 367 lK~Tp~~h-D~~~L~~A~~~~~~v~~~ine~~~~k~~~~~~~~~~e~~rk~~~~~kl~eiq~~I~g~~~--~~l~~~~r~ 443 (1108)
++.|++.. +|+.-..|+++++.|+..||+. .++++..+.|..|++.++-.+. ..+...+|+
T Consensus 411 l~rt~~~ser~~~a~~Al~av~klVr~CNe~----------------a~rMertEeli~i~~~leF~kvK~~PLiS~sRw 474 (695)
T KOG3523|consen 411 LKRTEEGSERYETATKALKAVSKLVRDCNEG----------------ARRMERTEELIRISRQLEFKKVKAFPLVSQSRW 474 (695)
T ss_pred HhhcCCCCHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHhhccccccceeeeccchhh
Confidence 99999988 9999999999999999999987 5788888899999999975444 667777999
Q ss_pred eeeeeeeEEEeC--------CCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCC-
Q psy17173 444 FYREDTLMKYDG--------KSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYEN- 514 (1108)
Q Consensus 444 li~eG~L~k~~~--------~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d- 514 (1108)
|++.|+|+.... .++..+..|+|||||+||+||++... .|.+...-+.+.+.+...+.
T Consensus 475 Lvk~GELt~l~~~~~s~~l~~k~~~~~vylfLFnD~Llitk~k~~~-------------~f~V~Dya~r~~l~ve~~e~~ 541 (695)
T KOG3523|consen 475 LVKRGELTQLVERRASPLLFSKRLSKTVYLFLFNDLLLITKKKSEG-------------SFQVFDYAPRSLLQVEKCEPE 541 (695)
T ss_pred hhhccccceeecccccchhhcccccceeeeeeecceeeEeeecCCC-------------ceEEeeccchhhhhhhhcCcc
Confidence 999999975542 22334689999999999999998874 57777766666666665551
Q ss_pred ---C------ccccccEEee---c-CC-CCeEEEEeCCHHHHHHHHHHH
Q psy17173 515 ---T------DDIKNAFEIA---P-RD-QPSIIIVTKSPEDKKSWFSDL 549 (1108)
Q Consensus 515 ---~------~~~~~aF~I~---~-~~-~~~~~l~a~s~eeK~~Wm~~L 549 (1108)
. ...+|.|.+. + .+ +..+.|.|.|..+|++||.++
T Consensus 542 ~~lp~~~~~~~~~~hlF~ltLl~N~~~~~~e~lL~a~s~Sd~~RWi~Al 590 (695)
T KOG3523|consen 542 LKLPGGANSLSSRPHLFLLTLLSNHQGRQTELLLSAESQSDRQRWISAL 590 (695)
T ss_pred cCCCCCCcccccccceEEEehhhccCCCceeeeecCCchHHHHHHHHhc
Confidence 1 1124778887 2 22 237999999999999999988
No 12
>KOG3541|consensus
Probab=99.98 E-value=1.8e-31 Score=290.30 Aligned_cols=398 Identities=18% Similarity=0.240 Sum_probs=274.9
Q ss_pred cccccccCHHHHHHHHcc--CCCCCh--hHHHHHHHhccccCCHHHHHHHHHHhcCCCCCCcccccCccchhhhhhHHHH
Q psy17173 604 MPLIKGATLHKLIERLTY--HIYADP--AFIGTFLTTYRSFTTPTELLDLLIDRFNVPDPNKVFENNNADIEESILREDI 679 (1108)
Q Consensus 604 ~~~IkagTL~kLIe~Lt~--~~~~D~--~f~~~FLlTyrsFttp~~LL~~Li~Ry~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (1108)
+.....|+.++++.+|.. +.+.|. -|+..++..-++|+.|.+++..+-+. .++.++... + |...+....
T Consensus 23 ~g~~~sgsrda~~~hlvptrd~~~dr~~c~I~S~~~ssd~~~~p~d~la~vgq~-~i~~ke~~~-~-----g~~~l~aa~ 95 (477)
T KOG3541|consen 23 VGQKSSGSRDADKCHLVPTRDRRPDRRRCYIFSNLSSSDSFSAPHDLLAEVGQS-GIDSKEALA-G-----GGAGLQAAQ 95 (477)
T ss_pred cccccccccccchhhcCCccccCCccceeecccccccccccCCcHHHHHHHHhc-ccCchhhhc-C-----CCcchhhhh
Confidence 345678999999999974 346777 78889999999999999999666543 222222111 0 111111122
Q ss_pred HHHhhhccchhhhHHHHHHHHHHhhcccccccCHHHHHHHHHHHhh----hcc-----CchhHHHHHHHHHHHHHhhhhh
Q psy17173 680 IRYKKELCQPVQFRVLNVFRQWVQHHFYDFQRDQNLLEKLKSFLLN----EIS-----GKSLRKWADIVLNLIQRKELDL 750 (1108)
Q Consensus 680 ~~~~~~~~~~vq~rVl~vl~~Wi~~~~~DF~~d~~ll~~L~~Fl~~----~v~-----~~~~~k~~~~l~~~l~r~~~~~ 750 (1108)
..+..-...+.| .++..|..+.||||.. +.++..+.+.... ... ++..+.......-....+....
T Consensus 96 ~~~f~l~a~~hq----rl~~ew~~nipydf~h-e~~~~el~~l~~~r~t~~l~t~~sv~~~~~ql~q~klp~~r~~rSQl 170 (477)
T KOG3541|consen 96 GGIFSLDAGHHQ----RLLAEWGGNIPYDFRH-EAEQLELYDLEMGRQTLELGTTISVGPKIEQLVQYKLPKNRHKRSQL 170 (477)
T ss_pred hhhhccCChHHH----HHHHHHhhcCCCchhh-HHHHHHHHHHHhhhHHHhhhccccccccHHHHHHhhcccchhhHhHh
Confidence 222111122223 4788999999999974 5555555543321 110 0111111110000000000000
Q ss_pred h----hhhhcc--cCCCCCCccccccCCC-CccccccccCHHHHHHHHhHHHHHHhcCCChhhhhcccccCCC-------
Q psy17173 751 E----KEITFA--FNNSPPPIEVHVPINS-IDEFNILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKN------- 816 (1108)
Q Consensus 751 ~----~~~~~~--~~~~pp~i~~~~~~p~-~~~~~ll~~~p~eiA~QLTl~e~~lf~~I~~~Ell~~~w~k~~------- 816 (1108)
+ .++..+ .....+.+. ..+.+. ...+--.+.++.++|+|||.|++..|..|.+.||+...-+...
T Consensus 171 ~~nll~kl~~~~~a~~q~~i~~-~kpl~a~~~~ll~~c~dal~laqqlt~Ie~~rls~i~~EelvqiL~sdp~sei~~~~ 249 (477)
T KOG3541|consen 171 DINLLSKLLGSGGAMYQNGIIV-SKPLAALIETLLPKCVDALDLAQQLTHIESCRLSLIPHEELVQILDSDPESEILESL 249 (477)
T ss_pred hHHHHHHhhcCCcccccccccc-cCCchHHHhhhhhccccHHHHHHHHHHHHHHHHhccCHHHHHHHHhcCcHHHHHHHh
Confidence 0 000000 000000000 000111 1334445789999999999999999999999999875432220
Q ss_pred ------CCCCCchHHHHHHHHhhHhhHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHhhcccccccch
Q psy17173 817 ------KAEYSPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLR 890 (1108)
Q Consensus 817 ------~~~~~pni~~~i~~fn~ls~wv~~~IL~~~~~~~Ra~~i~kfI~vA~~~~~l~NFns~~aI~sgL~s~~I~RLk 890 (1108)
+....-.+.++++|||++|..++++||.....+.|++++++||++|.+|.++||||++|||+.|++-++|.|||
T Consensus 250 ~~~l~~k~~~~ysie~y~~wfn~Lsa~~Atevlk~~kk~~rsamlef~iD~arec~nignfnSmmai~~~lnL~avarlk 329 (477)
T KOG3541|consen 250 VGLLAMKFPYDYSIERYMSWFNHLSALCATEVLKAAKKQTRSAMLEFLIDLARECFNIGNFNSMMAIGPGLNLNAVARLK 329 (477)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhccCCCCchHHHHH
Confidence 11123479999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCChHHHHHHHHHHhhhhhhHHHHHHHHhcC-----------CCCcccchhhhHhHHHHHHhcCCCCCCCCCcccH
Q psy17173 891 FTFQALPTRLQKVLEDARELNGDHFKKYQEKLRNI-----------NPPCIPFFGMYLTNILHIEEGNPDFLPDSKLINF 959 (1108)
Q Consensus 891 ~Tw~~l~~~~~k~l~~l~~l~~~n~~~yR~~l~~~-----------~~p~IPflGv~L~DL~~i~egnp~~~~~~~lINf 959 (1108)
+||..|.......++.-.+ +.+||.+||..++.. ....|||+..+|+|+.+++.+.+.++++ |.|||
T Consensus 330 ktw~kv~taK~e~lehqmd-ps~nflsyr~t~Kaa~wrs~sang~~ekaviPff~l~Lkdl~~i~~~h~~~l~N-ghinf 407 (477)
T KOG3541|consen 330 KTWIKVRTAKFEALEHQMD-PSSNFLSYRLTDKAAKWRSPSANGAPEKAVIPFFTLFLKDLLDISARHRLFLPN-GHINF 407 (477)
T ss_pred HHHHHHHHHHHHHHHhcCC-chhhhHHHHHHHHHHhhcCccccCCCccccccchhhhHHHHHHHHhhhcccCCC-chhHH
Confidence 9999997666555554222 568999999988743 1245999999999999999999999984 89999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHhcCCCCCCCchhhHHHHHHHhhhccCCCCC
Q psy17173 960 TKRRKVAEIISEIQQYQNEPYCLSVVPIYREFFENLSPFEGIDDNEMCNILFEQSLLIEPRHAT 1023 (1108)
Q Consensus 960 ~K~r~i~~ii~~i~~~Q~~~Y~~~~~~~i~~~l~~l~~~~~~~e~e~~d~ly~~Sl~iEPr~~~ 1023 (1108)
.|+..|...++++..|+.....|..+|.+++|+..... ++| +.+...|++.||++..
T Consensus 408 ~k~~~i~~qlr~v~~W~~v~c~fek~p~v~sylliaev---lse----~alm~~sfe~epPen~ 464 (477)
T KOG3541|consen 408 LKFVGIEGQLRTVELWSGVACPFEKVPNVNSYLLIAEV---LSE----PALMRASFESEPPENI 464 (477)
T ss_pred HHHHhHHhhhhhhhhhhcccchHhhCchHHhHHhhhhh---ccc----chhhhheecccCCcch
Confidence 99999999999999999999999999999999975432 333 5699999999998753
No 13
>KOG3520|consensus
Probab=99.97 E-value=3.5e-30 Score=313.95 Aligned_cols=306 Identities=15% Similarity=0.275 Sum_probs=254.6
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHhHhhhccCHHHHHHHHHHHHHHHHHhhccCCC-CCcc
Q psy17173 207 VLHYEQVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCLLGAVEDISEMSSD-DHCI 285 (1108)
Q Consensus 207 ~~sy~evi~ELi~TEr~Yv~~L~~ii~~f~~pl~~~~~l~~~~~i~~IFsNIeeI~~~~~~fL~~Le~~~~~~~~-~~~I 285 (1108)
+.-+||||.||+.||+..|+.|+++..+|+.||..... ++++++..||.|+++|+++|..|+..|.++.+.+.. ...|
T Consensus 388 ~iKRQEvI~EL~~TE~~HVRTLKIl~~vF~q~m~~e~~-~~~~~l~~LFP~LdeL~eiH~~f~~~lk~rr~e~~~vI~~I 466 (1167)
T KOG3520|consen 388 VVKRQEVIYELFQTERHHVRTLKILDRVFYQPMMEELL-FPQEELNKLFPCLDELIEIHSSFLQRLKERRKESLVVIKRI 466 (1167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhccchHHHH
Confidence 36789999999999999999999999999999998655 456999999999999999999999999999998876 6789
Q ss_pred hhHHHhhhhcc----cchhHHHHHhhhccHHHHHHHHHHh-cChhhHHHHHHhcccccccccccccccccccccchHhHH
Q psy17173 286 GSCFEEFAEDA----EFDVYEKLLHNIVNQKSIEVLSMHV-TQPSILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYF 360 (1108)
Q Consensus 286 G~~F~~~a~~~----~f~~Y~~Yc~N~~~~~a~~~l~~l~-~~~~~~~~~~~~~~~~~~~~~~~L~slLi~PvQRI~rY~ 360 (1108)
||+.+.+...+ ..++|+.||+++ ..|.+.|+.+. +++.|..|++. ++.++.|+++.|++.++.-+|||+|||
T Consensus 467 GDlLl~~FsGe~ae~L~~~~a~FCs~q--~~ALe~~K~k~~KD~rFq~fvkk-aeS~p~cRRL~lkd~I~~v~QRLTKYP 543 (1167)
T KOG3520|consen 467 GDLLLDQFSGENAERLKKTYAQFCSRQ--SIALEQLKTKQAKDKRFQAFVKK-AESNPVCRRLGLKDCILLVTQRLTKYP 543 (1167)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHhhcc--HHHHHHHHHHHhccHHHHHHHHH-hhcchHHHhhcchHHHHHHHHHHhhch
Confidence 99998864322 147999999999 59999999988 77888877775 888999999999999999999999999
Q ss_pred HHHHHHHhcCCCCc-hHHHHHHHHHHHHHHHHHHhhhhhhhcCcccccchhhhhhhHHHHHHHHHHHhhccC--------
Q psy17173 361 EYIKIFHSLTDSSK-DKECLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKNVDG-------- 431 (1108)
Q Consensus 361 LLLkeLlK~Tp~~h-D~~~L~~A~~~~~~v~~~ine~~~~k~~~~~~~~~~e~~rk~~~~~kl~eiq~~I~g-------- 431 (1108)
|||+.|+|||.+.. ++++|++|++..++|..+||.+ ++..|+..|+.+||+.++.
T Consensus 544 LLle~I~k~T~~~~~E~e~L~~Al~~~K~IL~~Vn~a----------------V~~~E~~~RL~eiq~RlD~~s~~~~~~ 607 (1167)
T KOG3520|consen 544 LLLERILKYTEDNTTEREKLQRALELVKEILSAVDQA----------------VKEAEKKQRLEEIQRRLDAKSLSKYKN 607 (1167)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHhccchhhhhccc
Confidence 99999999999887 9999999999999999999998 5777777899999998871
Q ss_pred ---CCcccccccccceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEE------Ee
Q psy17173 432 ---VDVRDLRPYLEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKE------MY 502 (1108)
Q Consensus 432 ---~~~~~l~~~~r~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~------~i 502 (1108)
|...|+.+ |+||++|.|.....++|- ++.|+.|++|+||+..++.. +|.|+. -+
T Consensus 608 ~~~F~kldLt~--rkLihdG~Ltwk~~~gk~-~dv~vlLLtD~LvlLqeqD~--------------Kyifksl~~~spVi 670 (1167)
T KOG3520|consen 608 GEEFRKLDLTR--RKLIHDGPLTWKTARGKT-KDVHVLLLTDILVLLQEKDQ--------------KYIFKSLDKKSPVI 670 (1167)
T ss_pred cchhhhhhhhh--hheeccCceEEeeccCch-hhhHHHHHHHHHHHhhhcCc--------------eeEeeccccCCCce
Confidence 22266775 899999999955444443 69999999999999988766 455543 35
Q ss_pred eccCeEEeecCCCccccccEEee-cCC-CC-eEEEEeCCHHHHHHHHHHHHHH
Q psy17173 503 FLRKVEINDYENTDDIKNAFEIA-PRD-QP-SIIIVTKSPEDKKSWFSDLIMV 552 (1108)
Q Consensus 503 ~l~~~~I~d~~d~~~~~~aF~I~-~~~-~~-~~~l~a~s~eeK~~Wm~~L~~l 552 (1108)
+|..+-|++.... +.+|-|. ..+ +. -|-+.|.|.+||+.||+.|.+.
T Consensus 671 sL~~livRevAtd---~ka~FlIs~s~~~pqmYEL~a~T~serntW~~li~~~ 720 (1167)
T KOG3520|consen 671 SLQKLIVREVATD---EKAFFLISMSDQGPEMYELVAQSKSERNTWIQLIQDA 720 (1167)
T ss_pred ehHHHHHHHHhcc---ccceEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHH
Confidence 6666644444322 3455554 332 23 6999999999999999988654
No 14
>KOG4305|consensus
Probab=99.96 E-value=5.8e-30 Score=311.70 Aligned_cols=330 Identities=17% Similarity=0.181 Sum_probs=250.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHh----HhhhccCHHHHHHHHHHHHHHHHHhhccCCCCC
Q psy17173 208 LHYEQVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKE----VHSLFEIIEEIYNLTVCLLGAVEDISEMSSDDH 283 (1108)
Q Consensus 208 ~sy~evi~ELi~TEr~Yv~~L~~ii~~f~~pl~~~~~l~~~~~----i~~IFsNIeeI~~~~~~fL~~Le~~~~~~~~~~ 283 (1108)
.-+|++|.|++.||++||+||+.+.+.|++||.+...+++ ++ +..+|+|+++|+.+|..||.+|..+.+..+...
T Consensus 334 ikRQe~I~Eli~tE~d~v~dLel~re~y~kpl~~S~iipE-~~~~~Fi~~vF~n~~~ii~ln~~LL~aL~~r~k~~G~V~ 412 (1029)
T KOG4305|consen 334 IKRQEAIFELIYTEEDFVADLELAREIYRKPLLESSIIPE-QERAEFIAHVFGNIEEIIQLNEKLLKALRVRQKLSGVVE 412 (1029)
T ss_pred hhhhheeEEEEeehhHHHHHHHHHHHHHhChHhhhccCcc-chhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCCccc
Confidence 4678899999999999999999999999999999866654 66 899999999999999999999999999988888
Q ss_pred cchhHHHhhhhcccchhHHHHHhhhccHHHHHHHHHH-hcChhhHHHHHHhcccccccccccccccccccccchHhHHHH
Q psy17173 284 CIGSCFEEFAEDAEFDVYEKLLHNIVNQKSIEVLSMH-VTQPSILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEY 362 (1108)
Q Consensus 284 ~IG~~F~~~a~~~~f~~Y~~Yc~N~~~~~a~~~l~~l-~~~~~~~~~~~~~~~~~~~~~~~~L~slLi~PvQRI~rY~LL 362 (1108)
.|||||+.+. +.|+.|..||+|+ +.+...+... ..+|.|+.++.. ++.-++++++.|.+||.+|+||+.|||||
T Consensus 413 ~IGdIll~~l--p~~~~yi~Y~a~q--~~ak~lie~k~k~n~~Fa~fl~~-~~~sp~~rkl~L~~FL~kp~sRl~RYpLl 487 (1029)
T KOG4305|consen 413 GIGDILLAWL--PKAEPYISYGANQ--AYAKALIEQKKKQNPRFARFLKE-CESSPESRKLDLVSFLTKPTSRLQRYPLL 487 (1029)
T ss_pred hHHHHHHHHh--hhhhHHHHHHhhh--HHHHHHHHHHhccCchHHHHHHH-HHhChhhhccchhhhhccccchhheeeHH
Confidence 9999998874 6689999999998 4777777766 466788877764 78889999999999999999999999999
Q ss_pred HHHHHhcC-CCCc-hHHHHHHHHHHHHHHHHHHhhhhhhhcCcccccchhhhhhhHHHHHHHHHHHhhccCC----Cccc
Q psy17173 363 IKIFHSLT-DSSK-DKECLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKNVDGV----DVRD 436 (1108)
Q Consensus 363 LkeLlK~T-p~~h-D~~~L~~A~~~~~~v~~~ine~~~~k~~~~~~~~~~e~~rk~~~~~kl~eiq~~I~g~----~~~~ 436 (1108)
|+++|||| |.+| |++.|.+|+..+++++..||.. .+..++-.++.+++..+--- .++-
T Consensus 488 lr~ILk~TdP~n~~D~q~L~~aI~~ir~l~~~iN~~----------------~g~aen~~~l~~l~~qllfe~~e~~~L~ 551 (1029)
T KOG4305|consen 488 LREILKHTDPENHPDLQLLKKAIEIIRGLLSEINQG----------------SGEAENRCRLEELSQQLLFEPGEAVNLG 551 (1029)
T ss_pred HHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHhChh----------------hccchhhhhHHHHHHHhhcccccccccc
Confidence 99999999 8888 9999999999999999999997 23334445666666665322 1255
Q ss_pred ccccccceeeeeeeEEEeCCCCcce-eEEEEeecCeEEEEecCCCCc-ccc-cccc------------ccCcceeE-EEE
Q psy17173 437 LRPYLEEFYREDTLMKYDGKSNRLT-ERKVYFFDGVLILCKSNKKIS-VTV-PINV------------VSSQYEFK-CKE 500 (1108)
Q Consensus 437 l~~~~r~li~eG~L~k~~~~~~~~~-er~~FLF~d~Ll~~k~~~~~~-~~~-~~~~------------~~~~~~y~-~k~ 500 (1108)
+..+.|.|+.+|.+.+....+.+.. +-|.|||+|.||++.+.+... ... +++. ..++..|+ ++.
T Consensus 552 l~d~~R~l~fkgil~~~~~~~~~~~~~~~~fLl~d~lLLt~~~k~~~~~~~~kvf~RPiPl~lL~~~~~~dn~~~k~Y~s 631 (1029)
T KOG4305|consen 552 LNDPERKLIFKGILKRKELSKTDGTKEDYIFLLLDNLLLTRKVKQNNKRHRHKVFSRPIPLDLLSLSPSEDNPSYKSYKS 631 (1029)
T ss_pred ccChhhhcceeeeeeeccccccCCCccceeehhhhhhhhhhhhhhccccccceeeccCcchhhhcccccccchhhhccCC
Confidence 5666799999999986554333222 448888888888877665432 111 1111 11233333 334
Q ss_pred EeeccCeEEeecCCC-ccccccEEeecC-CCCeEEEEeCCHHHHHHHHHHHHHHHhhHHHH
Q psy17173 501 MYFLRKVEINDYENT-DDIKNAFEIAPR-DQPSIIIVTKSPEDKKSWFSDLIMVNTKSMLE 559 (1108)
Q Consensus 501 ~i~l~~~~I~d~~d~-~~~~~aF~I~~~-~~~~~~l~a~s~eeK~~Wm~~L~~l~~~s~l~ 559 (1108)
.++...+.+.-..+. .+.+|.|..... -+.+|++++.+..+++.|+++|.+.|.+....
T Consensus 632 p~~~~~~~v~l~~~~~s~~~~~~~~~~ga~~~~ftly~~s~~~r~~w~ekI~~aq~~~le~ 692 (1029)
T KOG4305|consen 632 PIPLASVTVALPDKPTSNVKNFFLYLGGARGASFTLYAESLNGRDQWVEKIKQAQKRSLER 692 (1029)
T ss_pred CCcchhhhhhcccCCCCCccchhheeccccceEEEeeccchHHhhhHHhhhhHHHHhhhhh
Confidence 566666443222222 233444443322 25689999999999999999998877666543
No 15
>KOG3521|consensus
Probab=99.96 E-value=1.6e-28 Score=279.39 Aligned_cols=313 Identities=18% Similarity=0.284 Sum_probs=247.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCCCCHHhHhhhccCHHHHHHHHHHHHH-H----HHHhhccC
Q psy17173 208 LHYEQVVNDFVAEEKLFIRELKLILKIFYEELNK---ITPLKEIKEVHSLFEIIEEIYNLTVCLLG-A----VEDISEMS 279 (1108)
Q Consensus 208 ~sy~evi~ELi~TEr~Yv~~L~~ii~~f~~pl~~---~~~l~~~~~i~~IFsNIeeI~~~~~~fL~-~----Le~~~~~~ 279 (1108)
...|++|+||+.||-.||+.|..+++.|..-|.. ..-+. +-+-..+|+|+..|.++|+.|-. - |++..+..
T Consensus 176 ~kqQeAiWELvtTE~~YIrkL~~~tdlllacL~nlQe~GlL~-dVeaerlFsNv~~l~~~n~slW~~~l~P~laksr~Tg 254 (846)
T KOG3521|consen 176 CKQQEAIWELVTTEFRYIRKLLRYTDLLLACLLNLQECGLLK-DVEAERLFSNVPTLFNVNRSLWLQVLEPILAKSRETG 254 (846)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh-hhHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3457899999999999999999999988776654 33333 36778899999999999998743 2 33443443
Q ss_pred CCCC--cchhHHHhhhhcccchhHHHHHhhhccHHHHHHHHHHhcChhhHHHHHHhcccccccccccccccccccccchH
Q psy17173 280 SDDH--CIGSCFEEFAEDAEFDVYEKLLHNIVNQKSIEVLSMHVTQPSILNTLQFAGYGFKECVKYYLPNLLMSPLYHCN 357 (1108)
Q Consensus 280 ~~~~--~IG~~F~~~a~~~~f~~Y~~Yc~N~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~slLi~PvQRI~ 357 (1108)
.... -+-..|+.|+ .-|..|..||..+ ..++..+.++.++.+.+..+..+|+..+.|.++.|.+.|++||||++
T Consensus 255 epLd~~~lq~GFl~f~--s~f~pY~~ycle~--s~cm~y~rel~~~n~lFrafvtW~Ekqk~c~RqkL~D~l~kPmQRLT 330 (846)
T KOG3521|consen 255 EPLDPNYLQNGFLDFG--SWFRPYTNYCLEH--SDCMKYIRELLKENELFRAFVTWAEKQKNCDRQKLIDTLSKPMQRLT 330 (846)
T ss_pred CCCChHHHHHHHHHHH--HhhhHHHHHHHHH--hHHHHHHHHHhccchHHHHHHHHHHhhhhhhhHHHHHHhhhHHHHhh
Confidence 3322 2456788885 5599999999998 59999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhcCcccccchhhhhhhHHHHHHHHHHHhhccCCCccc-
Q psy17173 358 LYFEYIKIFHSLTDSSKDKECLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKNVDGVDVRD- 436 (1108)
Q Consensus 358 rY~LLLkeLlK~Tp~~hD~~~L~~A~~~~~~v~~~ine~~~~k~~~~~~~~~~e~~rk~~~~~kl~eiq~~I~g~~~~~- 436 (1108)
||+|||+.++|+|++..+++.+...+..++....+||.. .|..+.-++|...-..|++++..|
T Consensus 331 KY~LLLkAVlK~t~d~~e~Eai~aMi~svEsf~~~vN~~----------------l~qrqererL~~vm~rIe~ydvVd~ 394 (846)
T KOG3521|consen 331 KYPLLLKAVLKVTTDEREREAISAMIDSVESFTAHVNKE----------------LRQRQERERLAAVMRRIEGYDVVDQ 394 (846)
T ss_pred hhHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHH----------------HhhhHHHHHHHHHHHhcCcccccCC
Confidence 999999999999998889999999999999999999986 233333445666666666665422
Q ss_pred -----------------c--------cccccceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCcccccccccc
Q psy17173 437 -----------------L--------RPYLEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVS 491 (1108)
Q Consensus 437 -----------------l--------~~~~r~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~ 491 (1108)
+ ....|.|++||.+.+..+++.| -+.|+|||.|+||+||+..++..
T Consensus 395 ~sdevdknLK~~~~~~Dl~apm~g~~~~htRqLlleGdlrmKegk~sK-~DVhcfLfTDllLVcK~v~k~~d-------- 465 (846)
T KOG3521|consen 395 DSDEVDKNLKLFLNLLDLTAPMHGRKPEHTRQLLLEGDLRMKEGKGSK-ADVHCFLFTDLLLVCKKVQKKAD-------- 465 (846)
T ss_pred cHHHHHHHhhhhhhhhccccCCCCCChhhhhhhhhccceecccCCCcc-cceeeeeehhHHHHhHHHhhhcc--------
Confidence 1 1124899999999977775444 49999999999999998765322
Q ss_pred CcceeE-EEEEeeccCeEEeecCCCccccccEEeecCC-----CCeEEEEeCCHHHHHHHHHHHHHHHhhHH
Q psy17173 492 SQYEFK-CKEMYFLRKVEINDYENTDDIKNAFEIAPRD-----QPSIIIVTKSPEDKKSWFSDLIMVNTKSM 557 (1108)
Q Consensus 492 ~~~~y~-~k~~i~l~~~~I~d~~d~~~~~~aF~I~~~~-----~~~~~l~a~s~eeK~~Wm~~L~~l~~~s~ 557 (1108)
..+ ++-.+.++++.+....|. |.|.++.-. ...|++.|..++....|+++|.+++....
T Consensus 466 ---rlKVIRpPll~dklv~q~~~dp----nsf~lVhLtEFh~a~~ayt~hcs~p~d~~~W~D~l~~Aq~~~Q 530 (846)
T KOG3521|consen 466 ---RLKVIRPPLLMDKLVCQYLRDP----NSFLLVHLTEFHTAQAAYTMHCSGPEDTLRWTDMLKMAQDELQ 530 (846)
T ss_pred ---cceeeccchhhcceeeeecCCC----CceEEEeechhhhhhhhheeecCChhhHHHHHHHHHHHHHHHH
Confidence 333 445788899999888776 567766322 33699999999999999999998876654
No 16
>smart00325 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases. Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage.
Probab=99.96 E-value=1.1e-28 Score=258.39 Aligned_cols=178 Identities=25% Similarity=0.393 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHhHhhhccCHHHHHHHHHHHHHHHHHhhccCC-CCCcchhHHHh
Q psy17173 213 VVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCLLGAVEDISEMSS-DDHCIGSCFEE 291 (1108)
Q Consensus 213 vi~ELi~TEr~Yv~~L~~ii~~f~~pl~~~~~l~~~~~i~~IFsNIeeI~~~~~~fL~~Le~~~~~~~-~~~~IG~~F~~ 291 (1108)
||+||++||++||++|+.+++.|..|+.......+++++..||+||++|+.+|+.|+.+|+++.+.|. ....||++|.+
T Consensus 1 ii~Eli~tE~~Yv~~L~~l~~~y~~~l~~~~~~~~~~~~~~iF~~i~~i~~~h~~~l~~l~~~~~~~~~~~~~i~~~f~~ 80 (180)
T smart00325 1 VLKELLQTERNYVRDLKLLVEVFLKPLKKELKLLSPNELETLFGNIEEIYEFHRDFLDELEERIEEWDDSPERIGDVFLK 80 (180)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHH
Confidence 58999999999999999999999999999764566799999999999999999999999999999884 46889999998
Q ss_pred hhhcccchhHHHHHhhhccHHHHHHHHHHhcChhhHHHHHHhcccccccccccccccccccccchHhHHHHHHHHHhcCC
Q psy17173 292 FAEDAEFDVYEKLLHNIVNQKSIEVLSMHVTQPSILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYIKIFHSLTD 371 (1108)
Q Consensus 292 ~a~~~~f~~Y~~Yc~N~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~slLi~PvQRI~rY~LLLkeLlK~Tp 371 (1108)
+ ...|++|..||.|+ +.+.+.+.++.+++.+..+++.... .+.+.+++|.+||++||||++||++||++|+|+||
T Consensus 81 ~--~~~~~~Y~~Y~~~~--~~~~~~l~~~~~~~~f~~~~~~~~~-~~~~~~~~l~~~L~~PvqRl~rY~lll~~l~k~t~ 155 (180)
T smart00325 81 L--EEFFKIYSEYCSNH--PDALELLKKLKKNPRFQKFLKEIES-SPQCRRLTLESLLLKPVQRLTKYPLLLKELLKHTP 155 (180)
T ss_pred h--hHHHHHHHHHHHhH--HHHHHHHHHhhcChhHHHHHHHHhC-ChhhccCCHHHHHhHHHHHhccHHHHHHHHHHhCC
Confidence 8 45689999999999 6999999998888999988876433 34445689999999999999999999999999999
Q ss_pred CCc-hHHHHHHHHHHHHHHHHHHhh
Q psy17173 372 SSK-DKECLEQAQGLLAPLQISLSK 395 (1108)
Q Consensus 372 ~~h-D~~~L~~A~~~~~~v~~~ine 395 (1108)
++| |+..|++|++.++.++..||+
T Consensus 156 ~~~~d~~~l~~a~~~~~~~~~~iNe 180 (180)
T smart00325 156 EDHEDREDLKKALKAIKELANQVNE 180 (180)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 999 999999999999999999986
No 17
>cd00160 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
Probab=99.96 E-value=2.3e-28 Score=255.98 Aligned_cols=178 Identities=25% Similarity=0.377 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHhHhhhccCHHHHHHHHHHHHHHHHHhhccCC-CCCcchhH
Q psy17173 210 YEQVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCLLGAVEDISEMSS-DDHCIGSC 288 (1108)
Q Consensus 210 y~evi~ELi~TEr~Yv~~L~~ii~~f~~pl~~~~~l~~~~~i~~IFsNIeeI~~~~~~fL~~Le~~~~~~~-~~~~IG~~ 288 (1108)
+++|++||++||++||++|+.+++.|..|+.......+++++..||+||++|+++|+.|+.+|+++...|. ....||+|
T Consensus 1 r~~vi~Eli~tE~~Yv~~L~~l~~~y~~~l~~~~~~~~~~~~~~iF~~i~~i~~~h~~~l~~l~~~~~~~~~~~~~i~~~ 80 (181)
T cd00160 1 RQEVIKELLQTERNYVRDLKLLVEVFLKPLDKELLPLSPEEVELLFGNIEEIYEFHRIFLKSLEERVEEWDKSGPRIGDV 80 (181)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhccCcccchHHHH
Confidence 36799999999999999999999999999998765244589999999999999999999999999999886 46789999
Q ss_pred HHhhhhcccchhHHHHHhhhccHHHHHHHHHHhc-ChhhHHHHHHhcccccccccccccccccccccchHhHHHHHHHHH
Q psy17173 289 FEEFAEDAEFDVYEKLLHNIVNQKSIEVLSMHVT-QPSILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYIKIFH 367 (1108)
Q Consensus 289 F~~~a~~~~f~~Y~~Yc~N~~~~~a~~~l~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~slLi~PvQRI~rY~LLLkeLl 367 (1108)
|.++.. .|++|..||.|+ +.+...+.++.+ ++.+..++..... ...++.|.+||++||||++||+|||++|+
T Consensus 81 f~~~~~--~~~~Y~~Y~~~~--~~~~~~l~~~~~~~~~f~~~~~~~~~---~~~~~~l~~~L~~PvQRl~rY~lLL~~l~ 153 (181)
T cd00160 81 FLKLAP--FFKIYSEYCSNH--PDALELLKKLKKFNKFFQEFLEKAES---ECGRLKLESLLLKPVQRLTKYPLLLKELL 153 (181)
T ss_pred HHHhhh--HHHHHHHHHhCh--HHHHHHHHHHHHccHHHHHHHHHHHH---hcccCCHHHHhhhhHHHhchHHHHHHHHH
Confidence 999864 689999999999 689999999984 6666666654222 45668999999999999999999999999
Q ss_pred hcCCCCc-hHHHHHHHHHHHHHHHHHHh
Q psy17173 368 SLTDSSK-DKECLEQAQGLLAPLQISLS 394 (1108)
Q Consensus 368 K~Tp~~h-D~~~L~~A~~~~~~v~~~in 394 (1108)
|+||++| |+..|+.|+..++.+++.||
T Consensus 154 k~t~~~~~d~~~l~~a~~~~~~~~~~iN 181 (181)
T cd00160 154 KHTPDGHEDREDLKKALEAIKEVASQVN 181 (181)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 9999999 99999999999999999987
No 18
>KOG3417|consensus
Probab=99.96 E-value=2.5e-29 Score=318.97 Aligned_cols=460 Identities=22% Similarity=0.327 Sum_probs=328.2
Q ss_pred CCCCCcCCCCCCCceEEecc--cCCCcccccccCHHHHHHHHccCCCCChhHHHHHHHhccccCCHHHHHHHHHHhcCCC
Q psy17173 580 PEYYSFAEPDSCENIILEEK--QNTNMPLIKGATLHKLIERLTYHIYADPAFIGTFLTTYRSFTTPTELLDLLIDRFNVP 657 (1108)
Q Consensus 580 p~~~~~~epds~~~I~fe~~--~~~~~~~IkagTL~kLIe~Lt~~~~~D~~f~~~FLlTyrsFttp~~LL~~Li~Ry~~~ 657 (1108)
.+.+.+..|+...++.+.+. ...+.+..+.+|+..+.+++......+...+..++.+...|++..+++...+..|...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~ 85 (840)
T KOG3417|consen 6 SSKESFSVPDHALTLEFIDRLESTKSNLSSPSGSLESVLENIDTLANPDPRSQSSSLPTNDPNRTLQALASVQQESFDLD 85 (840)
T ss_pred ccCCCCCCcchhcchhhhhhhhcccccccccCCcccccccccCcccCcchhhhhccCCcCCCcccccchhhccccccCcc
Confidence 44567778888777777664 2346678899999999999998888899999999999999999999999999999987
Q ss_pred CCCcccccCcc--chhhhhh----HHHHHH----Hhh---hccchhhhHHHHHHHHHHhhcccccccCHHHHHHHHHHHh
Q psy17173 658 DPNKVFENNNA--DIEESIL----REDIIR----YKK---ELCQPVQFRVLNVFRQWVQHHFYDFQRDQNLLEKLKSFLL 724 (1108)
Q Consensus 658 ~~~~~~~~~~~--~~~~~~~----~~~~~~----~~~---~~~~~vq~rVl~vl~~Wi~~~~~DF~~d~~ll~~L~~Fl~ 724 (1108)
.+......... ..+.... ..+... ++. .....++.-.+..+..|+...+..|...+.+.+.....-.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (840)
T KOG3417|consen 86 GPVRTSVKSLKSIYVNSHRYSVKSLRLFQHLLTVLQQSENSPSNLLREESCKSVPEWIEAFPLTFKESPQLNKSTTELNF 165 (840)
T ss_pred cccccccccccccccccceecccccchhhhhhcccccCcCCccccccccccchhhhhhhcCCccccccHHHHhHHhhhhh
Confidence 76542210000 0000000 000000 000 0111234455788889999888877665555444333222
Q ss_pred hhccCchhHHHHHHHHHHHHHhhhhhhhhhhcccCCCCCCccccccCCC-CccccccccCHHHHHHHHhH-HHHHHhcCC
Q psy17173 725 NEISGKSLRKWADIVLNLIQRKELDLEKEITFAFNNSPPPIEVHVPINS-IDEFNILIAHPVEIARQLTL-LEFDYFRSV 802 (1108)
Q Consensus 725 ~~v~~~~~~k~~~~l~~~l~r~~~~~~~~~~~~~~~~pp~i~~~~~~p~-~~~~~ll~~~p~eiA~QLTl-~e~~lf~~I 802 (1108)
... ...+... + ..+..... ..+...... +.... ....+. ...|++++.+|.++|+|+|. +|...|++|
T Consensus 166 ~~~-~~~~~~~---~-~~~~~~s~---~~~~~~~~~-~~~~~-~~~~~~~~~~f~~~~~~~~e~~~~lt~lle~~~~~~i 235 (840)
T KOG3417|consen 166 LSL-APDHEES---S-VLLDSSSL---PSIRYSRNS-TQRTS-SPIKKLDARIFDFLRLTPRELSEQLTSLLESPDFRKI 235 (840)
T ss_pred hhh-ccccchh---h-cccccccc---cccchhhhc-ccccc-ccccchhheeeeccccchhhhcccccccccccccccc
Confidence 100 0000000 0 00000000 000000000 00000 001122 26788999999999999996 999999999
Q ss_pred ChhhhhcccccCCCCCCCCchHHHHHHHHhhHhhHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHhhc
Q psy17173 803 KPSELVGSVWTKKNKAEYSPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMG 882 (1108)
Q Consensus 803 ~~~Ell~~~w~k~~~~~~~pni~~~i~~fn~ls~wv~~~IL~~~~~~~Ra~~i~kfI~vA~~~~~l~NFns~~aI~sgL~ 882 (1108)
.+.|++++.|.+.++...+||+.+++.++|.++.||..+|+..+.+++|+.++.++|++|.++.+++|||++|++++|++
T Consensus 236 q~~e~~~~~~~~~~~~~~~P~~~~~~~~~~~~s~wv~~~il~~e~l~~r~~~~~~~L~~a~~~~el~n~~~~~~~v~~~~ 315 (840)
T KOG3417|consen 236 QPFELLSQSWLKKDKKINSPNIESSTSRFNHLSSWVEQEILNAEQLEERAEVILHFLEVAAKLSELNNLNSLMEVVSGLQ 315 (840)
T ss_pred CHHHHHHhhhhhcccccCCCchhhhhhcccchHHHHHHHHhccccHHHHHHhhHHHHHHhhhhhhccccccHHHHHhccc
Confidence 99999999999999989999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhhcCChHHHHHHHHHHhh--hhhhHHHHHHHHhcCCC-CcccchhhhHhH-HHHHHhcCCCCCC--CCCc
Q psy17173 883 SAAVYRLRFTFQALPTRLQKVLEDAREL--NGDHFKKYQEKLRNINP-PCIPFFGMYLTN-ILHIEEGNPDFLP--DSKL 956 (1108)
Q Consensus 883 s~~I~RLk~Tw~~l~~~~~k~l~~l~~l--~~~n~~~yR~~l~~~~~-p~IPflGv~L~D-L~~i~egnp~~~~--~~~l 956 (1108)
+++|+||++||+.++.+..+.+..+..+ ..+||++||..+.+++. |||||+|+||.| ++.+++++|++.. +...
T Consensus 316 ~s~i~~L~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~yr~~l~~~~~~~~ip~~~~~l~d~~~~l~~~~p~~~~~~~~~e 395 (840)
T KOG3417|consen 316 SSPISRLKKTGSYLSSEIKKKLILLTELTSLLDNVQNYRRYLQSCNISPCIPILGVYLLDSLVKLNEALPTKLLRIGERE 395 (840)
T ss_pred cchhhhhhhhhccccccchhhhhhHHHHhhcchHHHHHHHHhhhcccCccccccccccHHHHHhhhhcCCcccccccccc
Confidence 9999999999999998655555555544 45699999999999999 999999999999 9999999999985 3348
Q ss_pred ccHHHHHHHHHHHHHHHHHhcCCCCCCCchHHHH--HHHhcCCCCCCCchhhHHHHHHHhhhccCCCCCCC-----CCCC
Q psy17173 957 INFTKRRKVAEIISEIQQYQNEPYCLSVVPIYRE--FFENLSPFEGIDDNEMCNILFEQSLLIEPRHATHV-----PKFP 1029 (1108)
Q Consensus 957 INf~K~r~i~~ii~~i~~~Q~~~Y~~~~~~~i~~--~l~~l~~~~~~~e~e~~d~ly~~Sl~iEPr~~~~~-----~~~~ 1029 (1108)
++|.|++.+++++.+|+.+|+..|+-...+-... ++.+.... ...+...+|++|++|+.+||.....+ +..|
T Consensus 396 ~~~~~~~~~~~i~~elq~l~~~~~~~~~e~~~~~~~~~~~~~~~-~~~~~~~~d~l~~~sl~~ep~~~~~~~~~~~~~~~ 474 (840)
T KOG3417|consen 396 LSFSKLKVLLEIISELQDLQNKELHAPLEKVDKGTPLISSNLDL-EELERITEDALYEESLLLEPLALSNPTPPGKESKP 474 (840)
T ss_pred ccchhhhHHHHHHHHHHHHhccccccchhhhcCccccccccccH-HHHHhcccccccccchhcCcccccCCCCCccccCC
Confidence 9999999999999999999998874333322221 22221111 22344567899999999999765542 3345
Q ss_pred CCCCCCccCCCCccccCCCcc
Q psy17173 1030 RKWPNISLKSPLVKIKKTRVL 1050 (1108)
Q Consensus 1030 ~k~~~~~~~~~~~~~~~~~~~ 1050 (1108)
.+....+.|+.++.|+.+...
T Consensus 475 ~~~~~~~~~~~~v~~~~~~~~ 495 (840)
T KOG3417|consen 475 DVSVKVVRSASLVSPKTSPAL 495 (840)
T ss_pred CCCccccccccccccCCcccc
Confidence 555567777777777766533
No 19
>PLN00154 histone H2A; Provisional
Probab=99.95 E-value=2.1e-28 Score=232.27 Aligned_cols=90 Identities=22% Similarity=0.389 Sum_probs=83.8
Q ss_pred HHHcCCCCCCcccchhHHHhhHhhcc-ccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhcCh
Q psy17173 103 ALEKGKKKSSLVISIDRVQNILQKEF-YFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMYADK 181 (1108)
Q Consensus 103 ~~~~~~~r~~l~fpv~~~~~~l~~~~-~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~~D~ 181 (1108)
...++|+|||||||||||||+||+|. |++||+++||||||||||||||||||||||+++++++.||+|+||++|++||+
T Consensus 27 k~~srS~rAgL~FPVgRi~r~Lk~g~~~~~RVga~ApVYLAAVLEYLtAEVLELAGNaA~d~kk~RItPrHi~lAIrnDe 106 (136)
T PLN00154 27 KPTSRSSRAGLQFPVGRIHRQLKQRVSAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE 106 (136)
T ss_pred CCcCcccccCccCchHHHHHHHHhhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhCCceecHHHhhhhccCcH
Confidence 45578899999999999999999998 56899999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCCCC
Q psy17173 182 ALLELFFQEDDD 193 (1108)
Q Consensus 182 eL~~l~~~d~~~ 193 (1108)
||+.||. ..+.
T Consensus 107 EL~~Ll~-~TIa 117 (136)
T PLN00154 107 ELDTLIK-GTIA 117 (136)
T ss_pred HHHHHhc-CCcc
Confidence 9999996 4433
No 20
>PTZ00252 histone H2A; Provisional
Probab=99.94 E-value=6.9e-28 Score=227.76 Aligned_cols=87 Identities=24% Similarity=0.391 Sum_probs=82.5
Q ss_pred CCCCCCcccchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHh--cCcccccccchhhHHhcChhhh
Q psy17173 107 GKKKSSLVISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKN--IRKVDISIQDIDVAMYADKALL 184 (1108)
Q Consensus 107 ~~~r~~l~fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~--~~~~~itp~~i~~a~~~D~eL~ 184 (1108)
+|+||||+||||||||+|++|+|+.||+++|+||||||||||++||||||||++++ .++.||+|+||++|++||+||+
T Consensus 18 rS~rAGL~FPVgRi~R~Lr~g~ya~RIga~ApVYLAAVLEYLtaEVLELAgnaa~d~~~kk~RItPrHi~lAIrNDeEL~ 97 (134)
T PTZ00252 18 RSAKAGLIFPVGRVGSLLRRGQYARRIGASGAVYMAAVLEYLTAELLELSVKAAAQQAKKPKRLTPRTVTLAVRHDDDLG 97 (134)
T ss_pred cccccCccCchHHHHHHHHcCCcccccCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccHHHHHhhccChHHHH
Confidence 78899999999999999999999999999999999999999999999999999976 7889999999999999999999
Q ss_pred hhhccCCCC
Q psy17173 185 ELFFQEDDD 193 (1108)
Q Consensus 185 ~l~~~d~~~ 193 (1108)
.||....+.
T Consensus 98 ~Ll~~vTIa 106 (134)
T PTZ00252 98 SLLKNVTLS 106 (134)
T ss_pred HHHcCCccC
Confidence 999765544
No 21
>PLN00153 histone H2A; Provisional
Probab=99.94 E-value=1.1e-27 Score=226.78 Aligned_cols=90 Identities=27% Similarity=0.403 Sum_probs=85.5
Q ss_pred HHcCCCCCCcccchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhcChhh
Q psy17173 104 LEKGKKKSSLVISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMYADKAL 183 (1108)
Q Consensus 104 ~~~~~~r~~l~fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~~D~eL 183 (1108)
..++|+||||+||||||||+||+|+|+.||+++||||||||||||++||||||||++++.++.+|+|+|+++|++||+||
T Consensus 14 ~~srS~ragL~FpVgRi~R~Lr~g~~a~Rvga~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~RItPrHi~lAI~nDeEL 93 (129)
T PLN00153 14 AVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEEL 93 (129)
T ss_pred ccCcccccCcccchHHHHHHHhcCchhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHhhccCcHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCC
Q psy17173 184 LELFFQEDDD 193 (1108)
Q Consensus 184 ~~l~~~d~~~ 193 (1108)
+.||....+.
T Consensus 94 ~~Ll~~vTIa 103 (129)
T PLN00153 94 GKLLGEVTIA 103 (129)
T ss_pred HHHHCCCccC
Confidence 9999765544
No 22
>PLN00157 histone H2A; Provisional
Probab=99.94 E-value=1.1e-27 Score=227.60 Aligned_cols=91 Identities=27% Similarity=0.395 Sum_probs=85.6
Q ss_pred HHHcCCCCCCcccchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhcChh
Q psy17173 103 ALEKGKKKSSLVISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMYADKA 182 (1108)
Q Consensus 103 ~~~~~~~r~~l~fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~~D~e 182 (1108)
...++|+||||+||||||||+|++|+|+.||+++|+||||||||||++||||||||++++.++.+|+|+|+++|++||+|
T Consensus 15 k~~srS~ragL~FPVgRi~R~Lk~g~~a~RIg~~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~RItPrHi~lAI~nDeE 94 (132)
T PLN00157 15 KATSRSAKAGLQFPVGRIARYLKAGKYATRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVRNDEE 94 (132)
T ss_pred CCcCcccccCcccchHHHHHHHhcCchhhhcCCCcHhHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHhhcccCcHH
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCC
Q psy17173 183 LLELFFQEDDD 193 (1108)
Q Consensus 183 L~~l~~~d~~~ 193 (1108)
|+.||..-.+.
T Consensus 95 L~~Ll~~vtIa 105 (132)
T PLN00157 95 LSKLLGGVTIA 105 (132)
T ss_pred HHHHHcCceec
Confidence 99999755443
No 23
>PTZ00017 histone H2A; Provisional
Probab=99.94 E-value=1.3e-27 Score=228.19 Aligned_cols=91 Identities=30% Similarity=0.427 Sum_probs=85.9
Q ss_pred HHHcCCCCCCcccchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhcChh
Q psy17173 103 ALEKGKKKSSLVISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMYADKA 182 (1108)
Q Consensus 103 ~~~~~~~r~~l~fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~~D~e 182 (1108)
+..++|+||||+||||||||+|++|+|+.||+++|+||||||||||++||||||||+++++++.+|+|+||++|++||+|
T Consensus 16 k~~srS~ragL~FPVgRi~R~Lk~g~~a~RV~a~A~VYLAAVLEYLtaEILELAgNaa~d~kk~RItPrHi~lAI~nDeE 95 (134)
T PTZ00017 16 KPVSRSAKAGLQFPVGRVHRYLKKGRYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAAKDNKKKRITPRHIQLAIRNDEE 95 (134)
T ss_pred CcccccccCCcccchHHHHHHHhccchhccccccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHhhccCcHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCC
Q psy17173 183 LLELFFQEDDD 193 (1108)
Q Consensus 183 L~~l~~~d~~~ 193 (1108)
|+.||....+.
T Consensus 96 L~~Ll~~vtIa 106 (134)
T PTZ00017 96 LNKLLAGVTIA 106 (134)
T ss_pred HHHHHcCCccc
Confidence 99999766554
No 24
>PLN00156 histone H2AX; Provisional
Probab=99.94 E-value=1.1e-27 Score=228.59 Aligned_cols=91 Identities=26% Similarity=0.391 Sum_probs=85.9
Q ss_pred HHHcCCCCCCcccchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhcChh
Q psy17173 103 ALEKGKKKSSLVISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMYADKA 182 (1108)
Q Consensus 103 ~~~~~~~r~~l~fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~~D~e 182 (1108)
+..++|+||||+||||||||+|++|+|+.||+++||||||||||||++||||||||++++.++.+|+|+|+++|++||+|
T Consensus 18 k~~srS~rAgL~FPVgRi~R~Lk~g~ya~RVga~ApVYLAAVLEYLtaEVLELAgNaa~d~kk~RItPrHi~lAIrnDeE 97 (139)
T PLN00156 18 KSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEE 97 (139)
T ss_pred CCcCcccccCcccchHHHHHHHhcCChhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHhhccCcHH
Confidence 44568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCC
Q psy17173 183 LLELFFQEDDD 193 (1108)
Q Consensus 183 L~~l~~~d~~~ 193 (1108)
|+.||....+.
T Consensus 98 L~~Ll~~vTIa 108 (139)
T PLN00156 98 LSKLLGSVTIA 108 (139)
T ss_pred HHHHHCCCccC
Confidence 99999765544
No 25
>KOG1756|consensus
Probab=99.94 E-value=1.7e-27 Score=220.22 Aligned_cols=100 Identities=24% Similarity=0.409 Sum_probs=89.7
Q ss_pred hhhHHHHH-HHHHcCCCCCCcccchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc
Q psy17173 94 EWTFNEAK-QALEKGKKKSSLVISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQD 172 (1108)
Q Consensus 94 ~~~~~~~~-~~~~~~~~r~~l~fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~ 172 (1108)
+|+-.+.+ .+..++|.|||||||||||||+||+|+|++||+++||||+|||||||+|||||+|||+++++++.+|+|+|
T Consensus 6 k~gk~~~~~~~~~srs~~agl~fPvgri~r~Lr~~~~~~ri~~gapV~laavLeYL~Aeile~agnaardnkk~ri~PrH 85 (131)
T KOG1756|consen 6 KGGKAKPRAKAKSSRSSRAGLQFPVGRIHRLLRKGRYAQRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRITPRH 85 (131)
T ss_pred CCCcccchhhhhcchhhhcccccCHHHHHHHHHccchhhhccCCChHHHHHHHHHHHHHHHHHhHHHhhhcCccccChHH
Confidence 44433333 45567889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhcChhhhhhhccCCCC
Q psy17173 173 IDVAMYADKALLELFFQEDDD 193 (1108)
Q Consensus 173 i~~a~~~D~eL~~l~~~d~~~ 193 (1108)
+++|||||+||..|++.-.+.
T Consensus 86 ~~lAI~NDeEL~~lL~~vtIa 106 (131)
T KOG1756|consen 86 LQLAIRNDEELNKLLGKVTIA 106 (131)
T ss_pred HHHHHhCcHHHHHHhccceec
Confidence 999999999999999755543
No 26
>smart00414 H2A Histone 2A.
Probab=99.94 E-value=3.6e-27 Score=219.79 Aligned_cols=88 Identities=26% Similarity=0.462 Sum_probs=84.1
Q ss_pred cCCCCCCcccchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhcChhhhh
Q psy17173 106 KGKKKSSLVISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMYADKALLE 185 (1108)
Q Consensus 106 ~~~~r~~l~fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~~D~eL~~ 185 (1108)
++|+||||+||||||||+||+|+|++||+++|+||||||||||++||||||||+++++++.+|||+|+++|++||+||++
T Consensus 1 srS~ragL~fPVgRi~r~Lk~~~~~~Rv~~~A~VyLaAvLEYLtaEILeLagn~a~~~k~~rItp~hi~lAi~nD~EL~~ 80 (106)
T smart00414 1 SRSARAGLQFPVGRIHRLLRKGTYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKRRITPRHLQLAIRNDEELNK 80 (106)
T ss_pred CccccCCccCchHHHHHHHHcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHhhhccCCHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCC
Q psy17173 186 LFFQEDDD 193 (1108)
Q Consensus 186 l~~~d~~~ 193 (1108)
||..-.+.
T Consensus 81 L~~~vti~ 88 (106)
T smart00414 81 LLKGVTIA 88 (106)
T ss_pred HHcCcccC
Confidence 99775544
No 27
>KOG4240|consensus
Probab=99.93 E-value=2.5e-27 Score=287.26 Aligned_cols=293 Identities=18% Similarity=0.326 Sum_probs=224.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCH---HhHhhhccCHHHHHHHHHH-HHHHHHHhhccCCCCCcc
Q psy17173 210 YEQVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEI---KEVHSLFEIIEEIYNLTVC-LLGAVEDISEMSSDDHCI 285 (1108)
Q Consensus 210 y~evi~ELi~TEr~Yv~~L~~ii~~f~~pl~~~~~l~~~---~~i~~IFsNIeeI~~~~~~-fL~~Le~~~~~~~~~~~I 285 (1108)
...+++|+|+||+.||++|..+.++|+..+.+......+ .-...||||+++||+||.. ||..||..-..|.. |
T Consensus 633 ~~~~m~ellqterayv~~L~~~l~~y~~e~d~~~~~i~~~~Lnk~~~ifgnmeeiy~fhn~~~L~eLe~y~~~pE~---V 709 (1025)
T KOG4240|consen 633 KRHVMRELLQTERAYVRDLEECLEGYLAEMDSPMKEILPPLLNKKEIIFGNMEEIYEFHNDIFLSELEKYEQLPED---V 709 (1025)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhccccccchHHHHHhhHHHHHHHHhhHHHHHhhhhccCHHH---H
Confidence 355999999999999999999999999998876222111 2456699999999999765 99999999888866 9
Q ss_pred hhHHHhhhhcccchhHHHHHhhhccHHHHHHHHHHhcChhhHHHHHHhcccccccccccccccccccccchHhHHHHHHH
Q psy17173 286 GSCFEEFAEDAEFDVYEKLLHNIVNQKSIEVLSMHVTQPSILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYIKI 365 (1108)
Q Consensus 286 G~~F~~~a~~~~f~~Y~~Yc~N~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~slLi~PvQRI~rY~LLLke 365 (1108)
|.||++++ +.|++|..||.|- +.+..... +-....++.-++. +....+.+.+||++|||||+||.|||++
T Consensus 710 g~~fle~~--d~fqly~~Yc~nk--e~S~ql~~-~~a~~~ff~e~qr-----~~~l~l~~~S~l~kpvqritkYqlllke 779 (1025)
T KOG4240|consen 710 GHCFLERA--DDFQLYAKYCQNK--ELSNQLIR-LHAGCSFFQEIQR-----RHGLELSISSYLIKPVQRITKYQLLLKE 779 (1025)
T ss_pred HHHHHHHH--HHHHHHHHHHhCC--cchHHHHH-hcccccccHHHHH-----HhhhhhhhHHHHhHHHHHHHHHHHHHHH
Confidence 99999985 5589999999996 34443333 3333334434442 2333468899999999999999999999
Q ss_pred HHhcCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhcCcccccchhhhhhhHHHHHHHHHHHhhccCCCc--ccccccccc
Q psy17173 366 FHSLTDSSKDKECLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKNVDGVDV--RDLRPYLEE 443 (1108)
Q Consensus 366 LlK~Tp~~hD~~~L~~A~~~~~~v~~~ine~~~~k~~~~~~~~~~e~~rk~~~~~kl~eiq~~I~g~~~--~~l~~~~r~ 443 (1108)
|++... .-..+|+.|+++|-.|-..+|+. + . ...++|+++ .++| +
T Consensus 780 ll~~c~--e~~~~lkd~l~~ml~v~k~~nd~---------m--------------h----~~~~~~~d~nl~~lg----~ 826 (1025)
T KOG4240|consen 780 LLKCCC--EGTGDLKDALEVMLSVPKKVNDS---------M--------------H----LIALEGYDGNLDELG----K 826 (1025)
T ss_pred HHHhhh--hchHHHHHHHHHHHhhhhhcccc---------c--------------C----HHHHhhhhhhHHHHH----H
Confidence 999443 25667888999999998888875 1 1 123456666 3455 8
Q ss_pred eeeeeeeEEEeCC--CCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCcccccc
Q psy17173 444 FYREDTLMKYDGK--SNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNA 521 (1108)
Q Consensus 444 li~eG~L~k~~~~--~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~~a 521 (1108)
+|++|.+..|+.+ .++..+||+|||+-.+|+||+...++ ...+|-++++++++.+.|.+...|+.++++
T Consensus 827 ~~~q~~f~vw~~k~l~rk~~erhlfl~ei~ivf~K~~~~s~---------~~~~~~~~~~l~~~e~gite~v~Gd~~kf~ 897 (1025)
T KOG4240|consen 827 LIMQDSFSVWKPKALARKGMERHLFLFEISIVFCKRIEESS---------ERIKYVSKKKLPMSEVGITEHVEGDPCKFE 897 (1025)
T ss_pred HHhhccceeecHHHHhhhhHHHHHHHHHHHHHHHHHHHhcc---------CCCcchhhccCCHHhhcchhhcccCceEEE
Confidence 9999999988553 23557999999999999999876432 135777888899999999988888766544
Q ss_pred EEeecCCCCeEEEEeCCHHHHHHHHHHHHHHHhhHHH
Q psy17173 522 FEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVNTKSML 558 (1108)
Q Consensus 522 F~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~~~s~l 558 (1108)
... +.....|++.|.|.+-|..|++.|+.+.++.+.
T Consensus 898 ~~~-g~~~~~~~~~a~~~~~K~~W~~~ir~~~~~~~~ 933 (1025)
T KOG4240|consen 898 LWV-GRTESVIDLKASNHETKQKWVKEIREVLQERTI 933 (1025)
T ss_pred Eec-cCCCcceeeecCCcchhhhhccchHHHHHHHHH
Confidence 443 333568999999999999999999999777753
No 28
>PF00621 RhoGEF: RhoGEF domain; InterPro: IPR000219 The Rho family GTPases Rho, Rac and CDC42 regulate a diverse array of cellular processes. Like all members of the Ras superfamily, the Rho proteins cycle between active GTP-bound and inactive GDP-bound conformational states. Activation of Rho proteins through release of bound GDP and subsequent binding of GTP, is catalysed by guanine nucleotide exchange factors (GEFs) in the Dbl family. The proteins encoded by members of the Dbl family share a common domain, presented in this entry, of about 200 residues (designated the Dbl homology or DH domain) that has been shown to encode a GEF activity specific for a number of Rho family members. In addition, all family members possess a second, shared domain designated the pleckstrin homology (PH) domain (IPR001849 from INTERPRO). Trio and its homologue UNC-73 are unique within the Dbl family insomuch as they encode two distinct DH/PH domain modules. The PH domain is invariably located immediately C-terminal to the DH domain and this invariant topography suggests a functional interdependence between these two structural modules. Biochemical data have established the role of the conserved DH domain in Rho GTPase interaction and activation, and the role of the tandem PH domain in intracellular targeting and/or regulation of DH domain function. The DH domain of Dbl has been shown to mediate oligomerisation that is mostly homophilic in nature. In addition to the tandem DH/PH domains Dbl family GEFs contain diverse structural motifs like serine/threonine kinase, RBD, PDZ, RGS, IQ, REM, Cdc25, RasGEF, CH, SH2, SH3, EF, spectrin or Ig. The DH domain is composed of three structurally conserved regions separated by more variable regions. It does not share significant sequence homology with other subtypes of small G-protein GEF motifs such as the Cdc25 domain and the Sec7 domain, which specifically interact with Ras and ARF family small GTPases, respectively, nor with other Rho protein interactive motifs, indicating that the Dbl family proteins are evolutionarily unique. The DH domain is composed of 11 alpha helices that are folded into a flattened, elongated alpha-helix bundle in which two of the three conserved regions, conserved region 1 (CR1) and conserved region 3 (CR3), are exposed near the centre of one surface. CR1 and CR3, together with a part of alpha-6 and the DH/PH junction site, constitute the Rho GTPase interacting pocket.; GO: 0005089 Rho guanyl-nucleotide exchange factor activity, 0035023 regulation of Rho protein signal transduction, 0005622 intracellular; PDB: 3MPX_A 2RGN_E 2Z0Q_A 3T06_A 3KZ1_A 1XCG_E 2KR9_A 1BY1_A 1RJ2_J 1KZG_C ....
Probab=99.93 E-value=3.8e-25 Score=230.75 Aligned_cols=178 Identities=24% Similarity=0.355 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHhHhhhccCHHHHHHHHHHHHHHHHHhhccCCCCCcchhHHHhh
Q psy17173 213 VVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCLLGAVEDISEMSSDDHCIGSCFEEF 292 (1108)
Q Consensus 213 vi~ELi~TEr~Yv~~L~~ii~~f~~pl~~~~~l~~~~~i~~IFsNIeeI~~~~~~fL~~Le~~~~~~~~~~~IG~~F~~~ 292 (1108)
||+||++||+.|+++|+.+++.|+.|+.......+..++..||+||++|+++|+.|+..|+.+.+.+.....||++|.++
T Consensus 1 vi~ELi~tE~~y~~~L~~l~~~~~~~l~~~~~~l~~~~~~~lf~~i~~l~~~h~~ll~~L~~~~~~~~~~~~i~~if~~~ 80 (180)
T PF00621_consen 1 VINELIETERSYVEDLEILVEVFLKPLRKRSPLLSEDEIKSLFGNIEELIEIHQQLLESLEERMKEWSNIQSIGDIFLKF 80 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHhcchhhhhhHHHHHHHHHHHHHHhhhccchhhhhhhhc
Confidence 78999999999999999999999999998434445589999999999999999999999999887776688999999884
Q ss_pred hhcccchhHHHHHhhhccHHHHHHHHHHhcChh-hHHHHHHhcccccccccccccccccccccchHhHHHHHHHHHhcCC
Q psy17173 293 AEDAEFDVYEKLLHNIVNQKSIEVLSMHVTQPS-ILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYIKIFHSLTD 371 (1108)
Q Consensus 293 a~~~~f~~Y~~Yc~N~~~~~a~~~l~~l~~~~~-~~~~~~~~~~~~~~~~~~~L~slLi~PvQRI~rY~LLLkeLlK~Tp 371 (1108)
...+.+|..||.|+ +.+...+.++.+++. +..+++. +...+....+++.++|++|+|||+||+++|++|+|+|+
T Consensus 81 --~~~~~~Y~~Y~~~~--~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~l~~~l~~Piqrl~rY~lll~~llk~t~ 155 (180)
T PF00621_consen 81 --EPFLKVYISYCSNY--PDALSLLEELRKKNSEFKKFLEE-IENSPESKRLSLSSLLIKPIQRLPRYPLLLKRLLKNTP 155 (180)
T ss_dssp --TTGGHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH-HHTSHHCTTSTHHHHTTHHHHHHHHHHHHHHHHHHTSS
T ss_pred --cccccceeccchhe--echhhhhhHHHhhcccccccccc-ccccccccCCCHHHHHHHhhhHHHHHHHHHHHHHHcCC
Confidence 34578999999999 689999999887766 6666664 33344456688999999999999999999999999999
Q ss_pred CCc-hHHHHHHHHHHHHHHHHHHhh
Q psy17173 372 SSK-DKECLEQAQGLLAPLQISLSK 395 (1108)
Q Consensus 372 ~~h-D~~~L~~A~~~~~~v~~~ine 395 (1108)
++| |+..|++|+..++++...||+
T Consensus 156 ~~~~d~~~L~~a~~~i~~l~~~in~ 180 (180)
T PF00621_consen 156 PDHPDYKSLQKALDQIKELIQHINE 180 (180)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHHhCc
Confidence 999 999999999999999999986
No 29
>COG5262 HTA1 Histone H2A [Chromatin structure and dynamics]
Probab=99.93 E-value=3.2e-26 Score=206.95 Aligned_cols=90 Identities=28% Similarity=0.448 Sum_probs=85.0
Q ss_pred HHHcCCCCCCcccchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhcChh
Q psy17173 103 ALEKGKKKSSLVISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMYADKA 182 (1108)
Q Consensus 103 ~~~~~~~r~~l~fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~~D~e 182 (1108)
..++++.||+|+||||||||+||+++|..|||++|+||++||||||+|||||||||+|++.++++|+|+|+++|||||+|
T Consensus 15 ~~~s~sa~agl~fpvgrvkr~lk~~~~~~Rig~~A~Vyl~AvleYL~aEilelAgNaA~d~kkkri~PrHlqlAIrnD~E 94 (132)
T COG5262 15 VSQSRSAKAGLIFPVGRVKRLLKKGNYRMRIGAGAPVYLAAVLEYLAAEILELAGNAARDNKKKRIIPRHLQLAIRNDEE 94 (132)
T ss_pred hccchhhhcCccccHHHHHHHHHcCccceeecCCcHHHHHHHHHHHHHHHHHHhhhhhhhcCcceechHHHHHHhcCcHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCC
Q psy17173 183 LLELFFQEDD 192 (1108)
Q Consensus 183 L~~l~~~d~~ 192 (1108)
|+.+.+.-.+
T Consensus 95 L~~l~~~~tI 104 (132)
T COG5262 95 LNKLLGDVTI 104 (132)
T ss_pred HHHHhhhhee
Confidence 9999875544
No 30
>KOG3519|consensus
Probab=99.92 E-value=2.1e-25 Score=277.71 Aligned_cols=258 Identities=17% Similarity=0.203 Sum_probs=213.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHhHhhhccCHHHHHHHHHHHHHHHHHhhccC--CC-CCc
Q psy17173 208 LHYEQVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCLLGAVEDISEMS--SD-DHC 284 (1108)
Q Consensus 208 ~sy~evi~ELi~TEr~Yv~~L~~ii~~f~~pl~~~~~l~~~~~i~~IFsNIeeI~~~~~~fL~~Le~~~~~~--~~-~~~ 284 (1108)
.....|++|+++||++|+++|+.++..|+.++.+.......+.+..+||||++|+.|+..||+.|++..+.. .. ...
T Consensus 335 ~~~~~vi~E~l~tE~~Yv~~L~~~~~~yl~~~~k~~~~~~~~~~~~~f~ni~~i~~f~~~fl~~L~~~~~~~~~~~~~~~ 414 (756)
T KOG3519|consen 335 KKRTKVIKELLDTEKNYVKDLNALCEGYLPPQNKRARGLSVNQLDLLFGNIEDILRFQKEFLKTLEQQINPELIPPSLSE 414 (756)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhccccHHHHHHHccCHHHHHHHHHHHHHHHHHhcchhhcchhHhH
Confidence 344569999999999999999999999999986666666679999999999999999999999999999876 33 678
Q ss_pred chhHHHhhhhcccchhHHHHHhhhccHHHHHHHHHHhcChhhHHHHHHhcccccccccccccccccccccchHhHHHHHH
Q psy17173 285 IGSCFEEFAEDAEFDVYEKLLHNIVNQKSIEVLSMHVTQPSILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYIK 364 (1108)
Q Consensus 285 IG~~F~~~a~~~~f~~Y~~Yc~N~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~slLi~PvQRI~rY~LLLk 364 (1108)
||.||+.+ .+.|.+|.+||+++ +.+...+.++.+++++..++..+...-. -....|.+||++|||||+||||||+
T Consensus 415 ig~~fL~~--~~~f~~ys~yc~~h--~~~~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~~L~s~l~~pvqri~kYPLll~ 489 (756)
T KOG3519|consen 415 IGPVFLEQ--LDVFKIYSEYCNNH--PKAQKKLSKLKKKKKVKEFLEACNLLQQ-HSNSSLSSFLLKPVQRICKYPLLLN 489 (756)
T ss_pred HHHHHHHh--cccceeechhhhcc--chHHHHHHHHhhhhhhhhhhhhhhhhhc-cccCCchhhhccHHHHhccCchhhh
Confidence 99999987 46799999999999 6999999999999999999887444322 2238899999999999999999999
Q ss_pred HHHhcCCCCc-hHHHHHHHHHHHHHHHHHHhhhhhhhcCcccccchhhhhhhHHHHHHHHHHHhh---ccCCCccccccc
Q psy17173 365 IFHSLTDSSK-DKECLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKN---VDGVDVRDLRPY 440 (1108)
Q Consensus 365 eLlK~Tp~~h-D~~~L~~A~~~~~~v~~~ine~~~~k~~~~~~~~~~e~~rk~~~~~kl~eiq~~---I~g~~~~~l~~~ 440 (1108)
++++.|+.+| ||..+..|..+|+.++..||++.......+ ..++.+...|.. +++|+|..+...
T Consensus 490 elld~t~~~~~~~~~l~~a~~~m~~~~~~INe~~~~~e~~~------------~~~~~~~~~q~~~~~~~~~~~~~~~~~ 557 (756)
T KOG3519|consen 490 ELLDSTPLESSDYVPLSAALPAMKTVASLINEMKRKLESYS------------SFLDKIAAEQSGSNSLELSEGELLLDN 557 (756)
T ss_pred hhhhhccCCcchhhhhhhhhhhhhhHHHHHhhhhccccchh------------HHHHHhhhhhccchhhhccCCCccccc
Confidence 9999999999 999999999999999999999711111111 113444444444 899999766667
Q ss_pred ccceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCc
Q psy17173 441 LEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKIS 482 (1108)
Q Consensus 441 ~r~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~ 482 (1108)
+.+++..|...+..........+++|||+..+++|+.....+
T Consensus 558 Ss~l~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~c~~~~~~~ 599 (756)
T KOG3519|consen 558 SSELLLSGPSLKIRQFQSDSQQRQFFLFDNQLVYCKRSSTSR 599 (756)
T ss_pred ccceeeccchhhhhhhhcchhhhhheecccceeEeecccccc
Confidence 889999999886655322235899999999999999886544
No 31
>KOG1757|consensus
Probab=99.92 E-value=1.9e-26 Score=206.23 Aligned_cols=89 Identities=24% Similarity=0.394 Sum_probs=83.2
Q ss_pred HHHHHcCCCCCCcccchhHHHhhHhhcccc-ccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhc
Q psy17173 101 KQALEKGKKKSSLVISIDRVQNILQKEFYF-RKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMYA 179 (1108)
Q Consensus 101 ~~~~~~~~~r~~l~fpv~~~~~~l~~~~~~-~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~~ 179 (1108)
.....++++||||||||+||||+||..+.+ .|||++++||+|||||||||||||||||++++++.+||||+||++|++.
T Consensus 17 ~~k~vs~s~raGlqFpVgRihr~LK~r~t~h~rVGataavy~aaileYLTaEVLeLAgNasKdLKvKRitprHlqLAiRG 96 (131)
T KOG1757|consen 17 KAKAVSRSARAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 96 (131)
T ss_pred hhhhhhHHHhcccccchHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHcccccccceeeeccchhheeeecC
Confidence 345567899999999999999999988876 8999999999999999999999999999999999999999999999999
Q ss_pred Chhhhhhhcc
Q psy17173 180 DKALLELFFQ 189 (1108)
Q Consensus 180 D~eL~~l~~~ 189 (1108)
|+||+.|+..
T Consensus 97 DeELDtLIk~ 106 (131)
T KOG1757|consen 97 DEELDTLIKA 106 (131)
T ss_pred cHHHHHHHHH
Confidence 9999999853
No 32
>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.
Probab=99.92 E-value=1.9e-25 Score=211.03 Aligned_cols=95 Identities=25% Similarity=0.403 Sum_probs=87.4
Q ss_pred HcCCCCCCcccchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhcChhhh
Q psy17173 105 EKGKKKSSLVISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMYADKALL 184 (1108)
Q Consensus 105 ~~~~~r~~l~fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~~D~eL~ 184 (1108)
.++|+||||+|||+||||+||+|.|++||+++|+||||||||||++||||||||++++.++++|+|+||.+|++||+||+
T Consensus 11 ~s~s~ragL~fPV~ri~R~Lk~~~~a~RVs~~A~VyLaAvLEYL~aEIlelA~n~ak~~k~krItp~hi~lAi~nD~EL~ 90 (115)
T cd00074 11 RSRSARAGLQFPVGRIHRYLKKGRYAERVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKKRITPRHLQLAVRNDEELN 90 (115)
T ss_pred cccccccCccCcHHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHhccHHHH
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCCcCCC
Q psy17173 185 ELFFQEDDDPVYLEP 199 (1108)
Q Consensus 185 ~l~~~d~~~~~~~~~ 199 (1108)
+||....+...+-.|
T Consensus 91 ~L~~~vtI~~ggv~p 105 (115)
T cd00074 91 KLLKGVTIASGGVLP 105 (115)
T ss_pred HHHcCCcccCCccCC
Confidence 999876654333333
No 33
>KOG0689|consensus
Probab=99.92 E-value=1.2e-25 Score=257.29 Aligned_cols=291 Identities=17% Similarity=0.262 Sum_probs=223.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---CCCHHhHhhhccCHHHHHHHHHH-HHHHHHHhhccCCCCCcchh
Q psy17173 212 QVVNDFVAEEKLFIRELKLILKIFYEELNKITP---LKEIKEVHSLFEIIEEIYNLTVC-LLGAVEDISEMSSDDHCIGS 287 (1108)
Q Consensus 212 evi~ELi~TEr~Yv~~L~~ii~~f~~pl~~~~~---l~~~~~i~~IFsNIeeI~~~~~~-fL~~Le~~~~~~~~~~~IG~ 287 (1108)
-|+.|++.||+.||++|..++.+|...+..... +.... +.|||||.+||++|.. |+.+++.+..... ..|.
T Consensus 65 ~v~~e~iaTE~~yv~~l~~~~~~y~~~~~~~~lp~~lrg~~--~iifgni~~i~~~h~~~fl~e~e~~~r~~~---~~~~ 139 (448)
T KOG0689|consen 65 FVLDELIATEVDYVKDLKSVVENYIELLDAEDLPEDLRGKD--KIIFGNIKEIYEFHKKEFLPELERCERDPL---ELGQ 139 (448)
T ss_pred HHHHHHHHHHHhhhhccccccccccccccccCCChhccCCc--eeeechHHHHHHhhcccCcchHHHhhhCHH---HHHH
Confidence 389999999999999999999999999977521 12223 4499999999999998 5999999887764 4999
Q ss_pred HHHhhhhcccchhHHHHHhhhccHHHHHHHHHHhcChhhHHHHHHhcccccccccccccccccccccchHhHHHHHHHHH
Q psy17173 288 CFEEFAEDAEFDVYEKLLHNIVNQKSIEVLSMHVTQPSILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYIKIFH 367 (1108)
Q Consensus 288 ~F~~~a~~~~f~~Y~~Yc~N~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~slLi~PvQRI~rY~LLLkeLl 367 (1108)
+|+++.+...+ .|..||+|.. .. ..+...-.+..+++... .+...++.|.+||++|||||.||+|||++++
T Consensus 140 ~f~kh~~k~~~-~y~~y~q~kp--~s----~~~~~~~~~~~~f~~~~--~~~~~~l~l~~~l~kPiQR~~kYqlLL~~~~ 210 (448)
T KOG0689|consen 140 AFAKHERKNSV-LYVTYCQNKP--KS----DYLLAEYDNEAFFQEYQ--TQLGHKLDLSSYLIKPVQRIMKYQLLLQDFL 210 (448)
T ss_pred HHHHHHHHhhh-hhhhhhcCCC--CC----cccceecccchhhHHHh--hhcccccccchhhhhhhHHHHHHHHHHHHHH
Confidence 99998665444 9999999962 33 11111222233344322 2344568999999999999999999999999
Q ss_pred hcCCCCc-hHHHHHHHHHHHHHHHHHHhhhhhhhcCcccccchhhhhhhHHHHHHHHHHHhhccCCCcccccccccceee
Q psy17173 368 SLTDSSK-DKECLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKNVDGVDVRDLRPYLEEFYR 446 (1108)
Q Consensus 368 K~Tp~~h-D~~~L~~A~~~~~~v~~~ine~~~~k~~~~~~~~~~e~~rk~~~~~kl~eiq~~I~g~~~~~l~~~~r~li~ 446 (1108)
|.+.... |...+.+|.+.|+.+...+|+. +++ ..+.|++|....+ +.+++
T Consensus 211 k~~~~~~~d~~~l~~a~e~m~~~~~~~~d~--------------------~~~-------~~l~g~e~~l~~q--G~l~~ 261 (448)
T KOG0689|consen 211 KFCEKAGDDTDALCKAEEVMRFVLKRCNDM--------------------MQV-------GRLQGFEGDLKAQ--GKLRR 261 (448)
T ss_pred HHhhhcchhHHHHHHHHHHHHHHHHHhHhh--------------------hcc-------chhcccccchHhh--ccccc
Confidence 9999988 9999999999999999888765 111 2345888844333 47899
Q ss_pred eeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCccccccEEeec
Q psy17173 447 EDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNAFEIAP 526 (1108)
Q Consensus 447 eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~~aF~I~~ 526 (1108)
++++....++.++.++|.+|||+.++|++|..... .....|.+|..|.+.++......+.+.+ .|+|+.
T Consensus 262 qd~f~v~~~~~~~~~~R~vflFe~~v~Fse~~~~~---------~~~~~y~yk~~ik~~~lgle~n~~~s~~--rF~i~~ 330 (448)
T KOG0689|consen 262 QDEFDVSHGRAGKKKDRRVFLFERLVVFSKLRKPE---------SGTETYVYKQHIKVNDLGLEENNDNSAS--RFEIWF 330 (448)
T ss_pred cCccceeeccccccchhhhhhhhhhhhhhhhhcCC---------CCCcceeeecchhhhheeeeccCCCCCc--chhhhh
Confidence 99988776655444699999999999999988742 2345899999999999888776666555 455554
Q ss_pred CC---CCeEEEEeCCHHHHHHHHHHHHHHHhhH
Q psy17173 527 RD---QPSIIIVTKSPEDKKSWFSDLIMVNTKS 556 (1108)
Q Consensus 527 ~~---~~~~~l~a~s~eeK~~Wm~~L~~l~~~s 556 (1108)
++ ...|++.|.|.++|+.|+.+|..+..+.
T Consensus 331 r~~~~~~~~vlqa~s~~~k~~W~~~i~~~l~~Q 363 (448)
T KOG0689|consen 331 RGRKKREAYVLQAGSKEIKYAWTRAISSLLWQQ 363 (448)
T ss_pred hcccccceeEEeeCCHHHHHHHHHHHHHHHHHH
Confidence 43 3489999999999999999999885444
No 34
>KOG3522|consensus
Probab=99.91 E-value=2.2e-24 Score=253.22 Aligned_cols=264 Identities=14% Similarity=0.222 Sum_probs=212.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHhHhhhccCHHHHHHHHHHHHHHHHHhhccCCCCCcchhHHHhh
Q psy17173 213 VVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCLLGAVEDISEMSSDDHCIGSCFEEF 292 (1108)
Q Consensus 213 vi~ELi~TEr~Yv~~L~~ii~~f~~pl~~~~~l~~~~~i~~IFsNIeeI~~~~~~fL~~Le~~~~~~~~~~~IG~~F~~~ 292 (1108)
++.+|+++|++|+..|..+++.|++||.....+.++.+++.||-||.||+++|..||.+|+.+...|...+.+|+.|...
T Consensus 4 v~~~l~~~Eq~yv~sL~t~vd~y~qpL~~~~~l~~~~~~~eif~~i~ell~~he~fl~~l~s~~~~w~~qq~vga~~v~~ 83 (925)
T KOG3522|consen 4 VLLQLIDREQSYVESLHTGVDRYVQPLKERKVLIDPRDVDEIFQNIPELLEIHEDFLEQLCSRDQQWDEQQKVGASFVYS 83 (925)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccccccccccCCchHHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh
Confidence 67899999999999999999999999999877787799999999999999999999999999999999999999999775
Q ss_pred hh-cccchhHHHHHhhhccHHHHHHHHHHhcChhhHHHHHHhcccccccccccccccccccccchHhHHHHHHHHHhcCC
Q psy17173 293 AE-DAEFDVYEKLLHNIVNQKSIEVLSMHVTQPSILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYIKIFHSLTD 371 (1108)
Q Consensus 293 a~-~~~f~~Y~~Yc~N~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~slLi~PvQRI~rY~LLLkeLlK~Tp 371 (1108)
.. ..-.++|..||+|+. .|...+.... +|.|.+|++ |+++| |+|+|.|||+ |+||||
T Consensus 84 fSk~~v~~~Y~~y~nn~~--~A~~~l~~~~-rpaf~~Fl~----------------l~~kP--r~P~y~lll~-mlkhtp 141 (925)
T KOG3522|consen 84 FSKTAVLAAYSKYVNNFK--RAKCALRNKK-RPAFSKFLE----------------LMIKP--RFPRYELLLQ-MLKHTP 141 (925)
T ss_pred hhHHHHHHHHHHHHhchh--HHHHHHHHhc-chHHHHHHH----------------HHhcc--CCchHHHHHH-HhhcCC
Confidence 33 333689999999995 7777777766 888887776 79999 9999999999 999999
Q ss_pred CCc-hHHHHHHHHHHHHHHHHHHhhhhhhhcCcccccchhhhhhhHHHHHHHHHHHhhccCC-Cc-ccccccccceeeee
Q psy17173 372 SSK-DKECLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKNVDGV-DV-RDLRPYLEEFYRED 448 (1108)
Q Consensus 372 ~~h-D~~~L~~A~~~~~~v~~~ine~~~~k~~~~~~~~~~e~~rk~~~~~kl~eiq~~I~g~-~~-~~l~~~~r~li~eG 448 (1108)
.+| |+..|+.|+..++.++..+|+. +|-.+.+++++++-+.|++- ++ .+++.+.|.|+++.
T Consensus 142 ~~Hpdr~~Lq~al~~~~~~ae~ine~----------------kr~a~~~~e~q~~~rei~~r~el~e~L~ag~r~lLl~d 205 (925)
T KOG3522|consen 142 LDHPDRLILQLALTLLETLAEKINEH----------------KRFADEINELQAALREIEVRSELMEDLGAGRRQLLLQD 205 (925)
T ss_pred cCCCchHHHHHHHHhhHHHHHHHhhh----------------hhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHH
Confidence 999 9999999999999999999986 34334444444444444432 22 66777779999998
Q ss_pred eeEEEeCCCCcceeEEEEeecCeEEEEecCCCCcccc---ccccccCcceeEEEEEeeccCeEEeecCCC
Q psy17173 449 TLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTV---PINVVSSQYEFKCKEMYFLRKVEINDYENT 515 (1108)
Q Consensus 449 ~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~---~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~ 515 (1108)
.+......+++ ++|-.|+|+|.++.++-+....... ...+......|+++.++++....|....++
T Consensus 206 l~se~vy~~rk-~d~~~~~~rd~i~~~~Lk~~sg~~r~~~t~as~vdt~ky~~lw~~~L~~~~vvks~~g 274 (925)
T KOG3522|consen 206 LVSETVYTGRK-KDRKAFLFRDLIVNTDLKRASGSSRKPSTAASVVDTAKYKLLWKDPLVFADVVKSRAG 274 (925)
T ss_pred Hhhhhhhcccc-chhhheeeeeeeeeeeeeeeeceecCCccccccccccceeeeeccccchhheeeeccc
Confidence 88866555554 5899999999999877553221111 122223344999999999998888774433
No 35
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.86 E-value=1.7e-21 Score=184.37 Aligned_cols=112 Identities=41% Similarity=0.661 Sum_probs=98.7
Q ss_pred ccceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCccccc
Q psy17173 441 LEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKN 520 (1108)
Q Consensus 441 ~r~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~~ 520 (1108)
|++||+||.|.+++.+.+..++||+|||||+||+||++..+.. ..|..++.|+++++++|+++.|.|.+|+++++|
T Consensus 1 ~~elI~EG~L~ki~~~~~~~q~R~~FLFd~~Li~CK~~~~~~~----~~g~~~~~y~~k~~~~l~~~~V~d~~d~~~~kn 76 (112)
T cd01261 1 CNEFIMEGTLTRVGPSKKAKHERHVFLFDGLMVLCKSNHGQPR----LPGASSAEYRLKEKFFMRKVDINDKPDSSEYKN 76 (112)
T ss_pred CccccccCcEEEEecccCCcceEEEEEecCeEEEEEeccCccc----ccccccceEEEEEEEeeeeeEEEEcCCCcccCc
Confidence 7899999999999976555579999999999999998764322 234455699999999999999999999999999
Q ss_pred cEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHHhhH
Q psy17173 521 AFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVNTKS 556 (1108)
Q Consensus 521 aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~~~s 556 (1108)
+|+|.+.++++++|+|+|++||++||++|.+++++|
T Consensus 77 aF~I~~~~~~s~~l~Akt~eeK~~Wm~~l~~~~~~~ 112 (112)
T cd01261 77 AFEIILKDGNSVIFSAKNAEEKNNWMAALISVQTKS 112 (112)
T ss_pred eEEEEcCCCCEEEEEECCHHHHHHHHHHHHHHhcCC
Confidence 999998877899999999999999999999998875
No 36
>KOG3531|consensus
Probab=99.86 E-value=1.4e-22 Score=236.41 Aligned_cols=295 Identities=17% Similarity=0.256 Sum_probs=235.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHhHhhhccCHHHHHHHHHHHHHHHHHhhccCCC--------CCc
Q psy17173 213 VVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCLLGAVEDISEMSSD--------DHC 284 (1108)
Q Consensus 213 vi~ELi~TEr~Yv~~L~~ii~~f~~pl~~~~~l~~~~~i~~IFsNIeeI~~~~~~fL~~Le~~~~~~~~--------~~~ 284 (1108)
+++|+..|||.|.+||+.+.-.|..-+........ .....+|.|++.++++|+.||+++|+++..|+. .++
T Consensus 537 ~~kel~~tERty~kdleV~tt~Frst~v~~dam~~-~~~s~l~~~~~pl~k~h~~fLk~ieeria~weGrsnani~~~~~ 615 (1036)
T KOG3531|consen 537 IVKELSDTERTYLKDLEVITTWFRSTVVKEDAMPN-ALKSLLFHNSTPLTKFHEGFLKEIEERIALWEGRSNANIVIEQR 615 (1036)
T ss_pred eecccccccccchhccceeeeeecceeecCccccc-chhhhhccCCChhhHHHHHHHHHHHHHHHhccCCCCCceeeeec
Confidence 79999999999999999998888887776555443 677789999999999999999999999999976 266
Q ss_pred chhHHHhhhhcccchhHHHHHhhhccHHHHHHHHHHhcChhhHHHHHHhccccccccc--ccccccccccccchHhHHHH
Q psy17173 285 IGSCFEEFAEDAEFDVYEKLLHNIVNQKSIEVLSMHVTQPSILNTLQFAGYGFKECVK--YYLPNLLMSPLYHCNLYFEY 362 (1108)
Q Consensus 285 IG~~F~~~a~~~~f~~Y~~Yc~N~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~--~~L~slLi~PvQRI~rY~LL 362 (1108)
|||+-++.+ ..+.+|.+|...+. .....+.. .-++...+...+..|+.... +++..||++|++|+..|.++
T Consensus 616 igDVmLk~m--~~l~i~~~~~q~h~--~~l~~~t~---~~k~~~r~~~v~kefelqkvcyLP~~~fllkpL~rllhyq~~ 688 (1036)
T KOG3531|consen 616 IGDVMLKNM--RSLKITTTTTQRHA--ETLTTLTT---TSKVLTRLEAVYKEFELQKVCYLPLNTFLLKPLSRLLHYQLA 688 (1036)
T ss_pred cCCcchhhh--hccchhhhhHHhHH--HHHHHHhh---cchhhhhHHhhhccHHhhhccccccchhhhccccHHHHHHHH
Confidence 999998764 34689999998873 33333333 33334444444444544444 55668999999999999999
Q ss_pred HHHHHhcCCCCc-hHHHHHHHHHHHHHHHHHHhhhhhhhcCcccccchhhhhhhHHHHHHHHHHHhhccCCCcccccccc
Q psy17173 363 IKIFHSLTDSSK-DKECLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKNVDGVDVRDLRPYL 441 (1108)
Q Consensus 363 LkeLlK~Tp~~h-D~~~L~~A~~~~~~v~~~ine~~~~k~~~~~~~~~~e~~rk~~~~~kl~eiq~~I~g~~~~~l~~~~ 441 (1108)
|..|..|..++| ||.+...+...+-+....|... +..++++.|||..+.+.+ .+..+.
T Consensus 689 LeRLc~~~~~~h~d~ad~~a~~~~~~~~tk~iqs~-------------------m~~~e~l~Elkrdl~s~e--~LV~p~ 747 (1036)
T KOG3531|consen 689 LERLCGHYSPTHEDFADCKAKPNPITEPTKPLQSV-------------------MIRTEKLRELKRDLASIE--NLVHPG 747 (1036)
T ss_pred HHHhhcccCCCccchHHHhhccccccccccccccc-------------------chhHHHHHHHHHhhhccc--cccCcc
Confidence 999999999999 9999777766665555444332 222348999999887654 455667
Q ss_pred cceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCcccccc
Q psy17173 442 EEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNA 521 (1108)
Q Consensus 442 r~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~~a 521 (1108)
|+||++|.+.|.++++- ++|++|||+|++|++.++..... .|++.+-+|+. +.+.+.+++-++.|.
T Consensus 748 rE~ir~g~llK~skkgL--qqrmfFLfsdillytsk~~~~~~-----------~fri~g~lP~~-l~~en~en~~s~p~~ 813 (1036)
T KOG3531|consen 748 REFIRSGCLLKLSKKGL--QQRMFFLFSDILLYTSKGPDVQK-----------CFRINGDLPLT-LTMENSENEWSVPHC 813 (1036)
T ss_pred hhhhhcCCchhhccccc--hhhhhhhhhhhheeccCCCChhh-----------eeEeccCCceE-eeeecccccccCCce
Confidence 89999999999887764 59999999999999988754432 89999999999 999999999999999
Q ss_pred EEeecCCCCeEEEEeCCHHHHHHHHHHHHH
Q psy17173 522 FEIAPRDQPSIIIVTKSPEDKKSWFSDLIM 551 (1108)
Q Consensus 522 F~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~ 551 (1108)
|-|.+. ++.++..|.+-+++++|+.++.+
T Consensus 814 ~ti~~~-qk~i~vsast~~~sk~~~~~r~~ 842 (1036)
T KOG3531|consen 814 FTISGA-QKQIYVSASTRRESKKWEFDRRK 842 (1036)
T ss_pred EEEecc-ceEEEEeccchhhhhhhhhccch
Confidence 998775 67899999999999999986644
No 37
>COG5422 ROM1 RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
Probab=99.83 E-value=6.8e-21 Score=222.77 Aligned_cols=317 Identities=15% Similarity=0.196 Sum_probs=228.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC---HHhHhhhccCHHHHHHHHHHHHHHHHHhhccCCCCCc
Q psy17173 208 LHYEQVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKE---IKEVHSLFEIIEEIYNLTVCLLGAVEDISEMSSDDHC 284 (1108)
Q Consensus 208 ~sy~evi~ELi~TEr~Yv~~L~~ii~~f~~pl~~~~~l~~---~~~i~~IFsNIeeI~~~~~~fL~~Le~~~~~~~~~~~ 284 (1108)
+.+||+|-|.+-|||+||++|+.|-+.|++||.+...+.. .+=++..|.||.+||.++.+|+++|.++....+-...
T Consensus 483 ~kRqe~I~evi~ter~FVk~le~lRD~~~K~L~~sn~Ip~n~r~~Fik~vf~~i~~i~avn~k~~~AL~~rQ~lsPiv~~ 562 (1175)
T COG5422 483 IKRQEAIYEVIYTERDFVKDLEYLRDTWIKPLEESNIIPENARRNFIKHVFANINEIYAVNSKLLKALTNRQCLSPIVNG 562 (1175)
T ss_pred HhhhhhhhheeeeccchhhhhHHHHHHHHHHHHHcCcCchhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcccccccccc
Confidence 6789999999999999999999999999999998766653 2456778999999999999999999998887766889
Q ss_pred chhHHHhhhhcccchhHHHHHhhhccHHHHHHHHHH-hcChhhHHHHHHhcccccccccccccccccccccchHhHHHHH
Q psy17173 285 IGSCFEEFAEDAEFDVYEKLLHNIVNQKSIEVLSMH-VTQPSILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYI 363 (1108)
Q Consensus 285 IG~~F~~~a~~~~f~~Y~~Yc~N~~~~~a~~~l~~l-~~~~~~~~~~~~~~~~~~~~~~~~L~slLi~PvQRI~rY~LLL 363 (1108)
|||+|+++ .+.|+.+..|.++. +-+.-.+... ..+|.|+.+--. -....+..++.|.+||.+|+-|..||+||+
T Consensus 563 I~DifL~~--vP~Fepfiky~a~~--~yaky~~erekS~np~fa~Fd~~-v~rl~~s~k~~ld~yLtk~~tr~~Ry~lL~ 637 (1175)
T COG5422 563 IADIFLDY--VPKFEPFIKYGASQ--PYAKYEFEREKSVNPNFARFDHE-VERLDESRKLELDGYLTKPTTRLARYPLLL 637 (1175)
T ss_pred hHHHHHhh--hhhhhHHHHhhccc--chhheeeeeccccCcchhhhhHH-HHhcchhhhhcccceecCCcccchhhHHHH
Confidence 99999998 47799999999996 2333333322 245666654432 233344556889999999999999999999
Q ss_pred HHHHhcCCCCc-hHHHHHHHHHHHHHHHHHHhhhhhhhcCcccccchhhhhhhHHHHHHHHHHHhhc-cC-CCccccccc
Q psy17173 364 KIFHSLTDSSK-DKECLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKNV-DG-VDVRDLRPY 440 (1108)
Q Consensus 364 keLlK~Tp~~h-D~~~L~~A~~~~~~v~~~ine~~~~k~~~~~~~~~~e~~rk~~~~~kl~eiq~~I-~g-~~~~~l~~~ 440 (1108)
++.+|.|.++. |++++-.+++++++....+|-....++++..+ ..+ -|+.+ .+ +-...+...
T Consensus 638 e~vlkftd~d~~D~e~i~kv~d~~reFlsrl~~esG~Ae~r~~~-------------~~l--~qql~fk~e~~~lgl~D~ 702 (1175)
T COG5422 638 EEVLKFTDPDNPDTEDIPKVIDMLREFLSRLNFESGKAENRGDL-------------FHL--NQQLLFKPEYVNLGLNDE 702 (1175)
T ss_pred hhhcccCCCCCcchhHhHHHHHHHHHHHHHHhHhhcccccchhh-------------hhh--hhhhccCchhhcccccch
Confidence 99999999988 99999999999999999999875555554432 111 11111 11 111334456
Q ss_pred ccceeeeeeeEEEeC---CCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeE-EEEEeeccCeEEeecCCCc
Q psy17173 441 LEEFYREDTLMKYDG---KSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFK-CKEMYFLRKVEINDYENTD 516 (1108)
Q Consensus 441 ~r~li~eG~L~k~~~---~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~-~k~~i~l~~~~I~d~~d~~ 516 (1108)
.|.+|++|.+.+-.. ++.-..+.++||+|.++++||.+...+.. ..+ +...+++.-.-+.-.+|..
T Consensus 703 ~rkii~kgvlk~ka~~~td~s~~~di~f~llDn~ll~~Kak~vnkw~----------~hkvfqrpipl~ll~i~~~eDsp 772 (1175)
T COG5422 703 YRKIIFKGVLKRKAKSKTDGSLRGDIQFFLLDNMLLFCKAKAVNKWR----------QHKVFQRPIPLELLFISPDEDSP 772 (1175)
T ss_pred hHHHHHhhhhhhhhhccCCcccccceeeeehhhHHHHhcccchhhhh----------hceeecCCCcchhhccccccCCc
Confidence 789999999984332 22222488999999999999987543211 111 1122333322222222211
Q ss_pred c------------------------ccccEEeecCCC-CeEEEEeCCHHHHHHHHHHHHHHHh
Q psy17173 517 D------------------------IKNAFEIAPRDQ-PSIIIVTKSPEDKKSWFSDLIMVNT 554 (1108)
Q Consensus 517 ~------------------------~~~aF~I~~~~~-~~~~l~a~s~eeK~~Wm~~L~~l~~ 554 (1108)
. --+.|+..+.+. ..++++|.+..-++.|++.+.+-|.
T Consensus 773 ~~~~y~~~~~s~~~l~pa~nt~~P~~a~~F~~~~~~~ry~itlYa~~~~g~d~~lE~i~nqQ~ 835 (1175)
T COG5422 773 DRAEYLKPAPSADVLDPAYNTKPPKNAYGFELYGNGQRYQITLYAETHAGRDTWLEHIKNQQD 835 (1175)
T ss_pred hhhhccCCCCcccccChhhhcCCccccceeeeecccccccccccccccchHHHHHHhhhhhhh
Confidence 1 123577776553 4899999999999999999976543
No 38
>KOG3524|consensus
Probab=99.79 E-value=2.6e-19 Score=206.24 Aligned_cols=310 Identities=15% Similarity=0.209 Sum_probs=231.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CCCCCHHhHhhhccCHHHHHHHHHHHHHHHHHhhccCCCCCc
Q psy17173 209 HYEQVVNDFVAEEKLFIRELKLILKIFYEELNKI----TPLKEIKEVHSLFEIIEEIYNLTVCLLGAVEDISEMSSDDHC 284 (1108)
Q Consensus 209 sy~evi~ELi~TEr~Yv~~L~~ii~~f~~pl~~~----~~l~~~~~i~~IFsNIeeI~~~~~~fL~~Le~~~~~~~~~~~ 284 (1108)
++-++-.++..||.+|+.-|+.+++.|..+|... ..+..+.++..||+|+++|+.+|......|++-...|.+.-.
T Consensus 384 ~r~~~~~~~y~tesnyv~il~Ti~~lf~~kleei~e~~~pil~~~eiktifgn~l~I~~vh~k~~D~l~~l~~nw~e~k~ 463 (850)
T KOG3524|consen 384 LRVKFKEALYCTESNYVFILRTIVALFFGKLEEILELHEPILARLEIKTIFGNTLLIVVVHKKNDDKLLDLAQNWIEAKE 463 (850)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhCCcccCchhhcccccCchhhhhhhccchHHHHHHHHhhHHHHH
Confidence 3455788999999999999999999998887654 344556899999999999999999999999999999977333
Q ss_pred chhHHHhhhhcccchhHHHHHhhhccHHHHHHHHHHh-cChhhHHHHHHhcccccccccccccccccccccchHhHHHHH
Q psy17173 285 IGSCFEEFAEDAEFDVYEKLLHNIVNQKSIEVLSMHV-TQPSILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYI 363 (1108)
Q Consensus 285 IG~~F~~~a~~~~f~~Y~~Yc~N~~~~~a~~~l~~l~-~~~~~~~~~~~~~~~~~~~~~~~L~slLi~PvQRI~rY~LLL 363 (1108)
+|+ +.|-.|++-+ ....+.+..+- ++|.|.++++ ..+.+++|.+..|.++++.||||++--.|||
T Consensus 464 el~-----------kayppyvnff--et~ke~~~~cdre~prfhaflK-inq~kpecgRq~l~dlmirpvqrlpsvilll 529 (850)
T KOG3524|consen 464 ELK-----------KAYPPYVNFF--ETIKELFDKCDRENPRFHAFLK-INQSKPECGRQKLTDLMIRPVQRLPSVILLL 529 (850)
T ss_pred HHH-----------HhccchhhHH--HHhHHHHHHHhccchHHHHHHH-ccccchhhhhhcccchhccchhhhhHHHHHH
Confidence 333 3355555555 35666666665 4567766555 6899999999999999999999999999999
Q ss_pred HHHHhcCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhcCcccccchhhhhhhHHHHHHHHHHHhhccCCCcccccccccc
Q psy17173 364 KIFHSLTDSSKDKECLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKNVDGVDVRDLRPYLEE 443 (1108)
Q Consensus 364 keLlK~Tp~~hD~~~L~~A~~~~~~v~~~ine~~~~k~~~~~~~~~~e~~rk~~~~~kl~eiq~~I~g~~~~~l~~~~r~ 443 (1108)
++|.| +..+.|+..+++|..++++|..+||+. +|+.+++..+.++-..|+||+..-+. ..|.
T Consensus 530 ndl~k-~s~N~dk~~leea~kaikev~khIned----------------Krkte~~~~ifdkf~diegcpa~lvs-snrs 591 (850)
T KOG3524|consen 530 NDMAK-KSDNKDKNNLEEAAKAIKEVLKHINED----------------KRKTENFISIFDKFTDIEGCPAILVS-SNRS 591 (850)
T ss_pred HHHHh-hccCcchhhHHHhhhhHHHHHHHhchh----------------HHHHHHHHHHHHHHHhhhcCchhhee-ccch
Confidence 99999 555569999999999999999999987 67888888887888888998763222 2356
Q ss_pred eeeeeeeE-EEeC-CCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeE-EeecCCCccccc
Q psy17173 444 FYREDTLM-KYDG-KSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVE-INDYENTDDIKN 520 (1108)
Q Consensus 444 li~eG~L~-k~~~-~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~-I~d~~d~~~~~~ 520 (1108)
||++=... .++. +..+..+..+|||+|++++|+.+.....++....+.....|+...-++|+.|+ |.|+..++++.|
T Consensus 592 fi~~lev~i~l~~~~~~rg~~~~l~lf~dvlei~k~r~~~~~tF~S~hs~tr~p~KhI~li~LntIr~V~dIrE~~~cpn 671 (850)
T KOG3524|consen 592 FIRELEVSIALTSPGLQRGAKMKLFLFHDVLEITKIRLARHASFASLHSRQRRPYKHIDLIQLNTIRSVFDIREIAKCPN 671 (850)
T ss_pred HHHHhhhhhhhcCcccccccceeeehhhhHHHHHHHhHhhhccccCCCCCCCCcccceeeccHHHHHHHhhhhhhccCcc
Confidence 66654442 1111 11222478899999999999988443333333334444458988899999876 566777788889
Q ss_pred cEEeecC--CCC---eEEEEeCCHH-HHHH-HHHHHH
Q psy17173 521 AFEIAPR--DQP---SIIIVTKSPE-DKKS-WFSDLI 550 (1108)
Q Consensus 521 aF~I~~~--~~~---~~~l~a~s~e-eK~~-Wm~~L~ 550 (1108)
||-+.-+ ++. ..+|...+.| -++. |++.|.
T Consensus 672 AF~lllr~~~EQ~~v~~~Fq~tdDE~p~e~~y~K~LC 708 (850)
T KOG3524|consen 672 AFVLLLRHRDEQGGIDTVFESNDDEDPSDMRYFKNLC 708 (850)
T ss_pred ceEEEEeCchhhcCeeEEEEecccccchhhHHHHHHh
Confidence 9988733 332 2335555555 3555 999886
No 39
>PF00618 RasGEF_N: RasGEF N-terminal motif; InterPro: IPR000651 The crystal structure of the guanine nucleotide exchange factor (GEF) region of human Sos1 complexes with Ras has been solved []. The structure consists of two distinct alpha helical structural domains: the N-terminal domain which seems to have a purely structural role and the C-terminal domain which is sufficient for catalytic activity and contains all residues that interact with Ras. A main feature of the catalytic domain is the protrusion of a helical hairpin important for the nucleotide-exchange mechanism. The N-terminal domain is likely to be important for the stability and correct placement of the hairpin structure. This entry represents a domain found in several GEF for Ras-like small GTPases which lies N-terminal to the RasGef (Cdc25-like) domain. ; GO: 0005085 guanyl-nucleotide exchange factor activity, 0051056 regulation of small GTPase mediated signal transduction, 0005622 intracellular; PDB: 3CF6_E 2BYV_E 1NVW_S 1BKD_S 1XDV_A 2II0_A 1NVU_S 1NVX_S 1NVV_S 1XD4_B ....
Probab=99.75 E-value=1.7e-18 Score=164.69 Aligned_cols=103 Identities=51% Similarity=0.799 Sum_probs=79.6
Q ss_pred cccccCHHHHHHHHccC-CCCChhHHHHHHHhccccCCHHHHHHHHHHhcCCCCCCcccccCccchhhhhhHHHHHHHhh
Q psy17173 606 LIKGATLHKLIERLTYH-IYADPAFIGTFLTTYRSFTTPTELLDLLIDRFNVPDPNKVFENNNADIEESILREDIIRYKK 684 (1108)
Q Consensus 606 ~IkagTL~kLIe~Lt~~-~~~D~~f~~~FLlTyrsFttp~~LL~~Li~Ry~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1108)
.|+||||++||++||.. ...|..|+++||+|||+|+||.+|+++|++||+...+.... + ...|. +
T Consensus 1 ~I~~gtl~~Li~~L~~~~~~~d~~f~~~FllTyr~F~tp~~Ll~~L~~ry~~~~~~~~~---------~--~~~~~---~ 66 (104)
T PF00618_consen 1 QIKAGTLEKLIERLTSSFNSDDEEFVDTFLLTYRSFTTPEELLDKLIQRYNIPPPNGLS---------Q--DESWD---Q 66 (104)
T ss_dssp EEEEE-HHHHHHHHCHC-SS-HHHHHHHHHHHHHHCS-HHHHHHHHHHHHT---SSS-H---------H--HHT-H---H
T ss_pred CeeeeCHHHHHHHHhcccccCCHHHHHHHHHHhHhhCCHHHHHHHHHHHhcccCCcccc---------c--cchhh---h
Confidence 37999999999999988 77899999999999999999999999999999865553211 0 11232 2
Q ss_pred hccchhhhHHHHHHHHHHhhcccccccCHHHHHHHHHH
Q psy17173 685 ELCQPVQFRVLNVFRQWVQHHFYDFQRDQNLLEKLKSF 722 (1108)
Q Consensus 685 ~~~~~vq~rVl~vl~~Wi~~~~~DF~~d~~ll~~L~~F 722 (1108)
+...++|.||+++++.||++||.||..|+.+++.|.+|
T Consensus 67 ~~~~~i~~rv~~~l~~Wi~~~~~df~~~~~l~~~l~~F 104 (104)
T PF00618_consen 67 DSQEPIRLRVLNVLKYWIENYPDDFRDDPELLEKLKQF 104 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHChHhhCCCHHHHHHHHcC
Confidence 23346899999999999999999999998899999887
No 40
>smart00229 RasGEFN Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal motif. A subset of guanine nucleotide exchange factor for Ras-like small GTPases appear to possess this domain N-terminal to the RasGef (Cdc25-like) domain. The recent crystal structureof Sos shows that this domain is alpha-helical and plays a "purely structural role" (Nature 394, 337-343).
Probab=99.75 E-value=7e-18 Score=166.55 Aligned_cols=121 Identities=42% Similarity=0.614 Sum_probs=96.4
Q ss_pred ccccccCHHHHHHHHccCCC-CChhHHHHHHHhccccCCHHHHHHHHHHhcCCCCCCcccccCccchhhhhhHHHHHHHh
Q psy17173 605 PLIKGATLHKLIERLTYHIY-ADPAFIGTFLTTYRSFTTPTELLDLLIDRFNVPDPNKVFENNNADIEESILREDIIRYK 683 (1108)
Q Consensus 605 ~~IkagTL~kLIe~Lt~~~~-~D~~f~~~FLlTyrsFttp~~LL~~Li~Ry~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1108)
+.|+|||+++||++||.+.. .|+.|+.+||+|||+||||.+|+++|++||..+.+.. |.. .
T Consensus 3 ~~i~~gtl~~Li~~L~~~~~~~d~~f~~~Flltyr~F~tp~~ll~~L~~rf~~~~~~~-----------------~~~-~ 64 (127)
T smart00229 3 GLIKGGTLEKLIEHLTEAFDKADPFFVETFLLTYRSFITTQELLQLLLYRYNAIPPES-----------------WVE-R 64 (127)
T ss_pred CeeeeecHHHHHHHHcCCCcCCCHHHHHHHHHHhhhhCCHHHHHHHHHHHhCCCCcHH-----------------HHH-H
Confidence 47899999999999998865 8999999999999999999999999999999876531 110 1
Q ss_pred hhccchhhhHHHHHHHHHHhhcccccccCHHHHHHHHHHHhhhccCchhHHHHHHHHHHHH
Q psy17173 684 KELCQPVQFRVLNVFRQWVQHHFYDFQRDQNLLEKLKSFLLNEISGKSLRKWADIVLNLIQ 744 (1108)
Q Consensus 684 ~~~~~~vq~rVl~vl~~Wi~~~~~DF~~d~~ll~~L~~Fl~~~v~~~~~~k~~~~l~~~l~ 744 (1108)
+.....+|.||++++++||+.||+||..++.+...|.+|++. +......++...+.+++.
T Consensus 65 ~~~~~~~~~rv~~~l~~Wv~~~~~dF~~~~~l~~~l~~f~~~-~~~~~~~~~~~~l~~~~~ 124 (127)
T smart00229 65 KVNPLRVKNRVLNILRHWVENYWQDFEDDPKLILRLLEFLDL-VDQEKGPGLVTSLQELLQ 124 (127)
T ss_pred HhhHHHHHHHHHHHHHHHHHHCCcccccCHHHHHHHHHHHHH-HhhCcCCCHHHHHHHHHH
Confidence 122235889999999999999999999999999999999984 333333444555555443
No 41
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.73 E-value=3.9e-17 Score=152.10 Aligned_cols=98 Identities=19% Similarity=0.338 Sum_probs=84.9
Q ss_pred ceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCccc----
Q psy17173 443 EFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDI---- 518 (1108)
Q Consensus 443 ~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~---- 518 (1108)
+||++|++.+++....+.++|++||||+.||+||+....+ ..|.||+++.|+.+.|.|.+|++..
T Consensus 1 eli~~Gel~~~s~~~g~~q~R~~FLFD~~LI~CKkd~~r~-----------~~~~yKgri~l~~~~I~d~~Dg~~~~~~~ 69 (109)
T cd01224 1 ELFLQGEATRQKQNKGWNSSRVLFLFDHQMVLCKKDLIRR-----------DHLYYKGRIDLDRCEVVNIRDGKMFSSGH 69 (109)
T ss_pred CceEeeeEEEEecccCCcccEEEEEecceEEEEecccccC-----------CcEEEEEEEEcccEEEEECCCCccccCCc
Confidence 6899999999986422226999999999999999876543 3899999999999999999998544
Q ss_pred --cccEEeecCC-CCeEEEEeCCHHHHHHHHHHHHH
Q psy17173 519 --KNAFEIAPRD-QPSIIIVTKSPEDKKSWFSDLIM 551 (1108)
Q Consensus 519 --~~aF~I~~~~-~~~~~l~a~s~eeK~~Wm~~L~~ 551 (1108)
+|||+|...+ +++++|+|+|+|+|++||++|..
T Consensus 70 ~~knafkl~~~~~~~~~~f~~Kt~e~K~~Wm~a~~~ 105 (109)
T cd01224 70 TIKNSLKIYSESTDEWYLFSFKSAERKHRWLSAFAL 105 (109)
T ss_pred eeEEEEEEEEcCCCeEEEEEECCHHHHHHHHHHHHH
Confidence 8999999887 67999999999999999999954
No 42
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.68 E-value=3.4e-16 Score=146.92 Aligned_cols=100 Identities=16% Similarity=0.277 Sum_probs=88.2
Q ss_pred ccceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCccccc
Q psy17173 441 LEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKN 520 (1108)
Q Consensus 441 ~r~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~~ 520 (1108)
+|.||+||.|+|++.++.+ +||+|||||+|||++....+ ..|++...++|.++.|.+.+|++..+|
T Consensus 1 gR~li~eG~L~K~~rk~~~--~R~ffLFnD~LvY~~~~~~~------------~~~~~~~~i~L~~~~v~~~~d~~~~~n 66 (104)
T cd01218 1 GRVLVGEGVLTKMCRKKPK--QRQFFLFNDILVYGNIVISK------------KKYNKQHILPLEGVQVESIEDDGIERN 66 (104)
T ss_pred CCEEEecCcEEEeecCCCc--eEEEEEecCEEEEEEeecCC------------ceeeEeeEEEccceEEEecCCcccccc
Confidence 4799999999999977654 89999999999999874332 279999999999999999999888999
Q ss_pred cEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHHhh
Q psy17173 521 AFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVNTK 555 (1108)
Q Consensus 521 aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~~~ 555 (1108)
+|.|.+. +++++++|+|++||.+||++|..+...
T Consensus 67 ~f~I~~~-~kSf~v~A~s~~eK~eWl~~i~~ai~~ 100 (104)
T cd01218 67 GWIIKTP-TKSFAVYAATETEKREWMLHINKCVTD 100 (104)
T ss_pred eEEEecC-CeEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 9999987 679999999999999999999877544
No 43
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.68 E-value=3.5e-16 Score=146.36 Aligned_cols=97 Identities=22% Similarity=0.357 Sum_probs=86.1
Q ss_pred ceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCccccccE
Q psy17173 443 EFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNAF 522 (1108)
Q Consensus 443 ~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~~aF 522 (1108)
+||+||.|.|+++++. ++|++|||||+||||.+....+ ..|++++.++|.++.|.+.+|..+..|+|
T Consensus 1 ~~ikEG~L~K~~~k~~--~~R~~FLFnD~LlY~~~~~~~~-----------~~y~~~~~i~L~~~~V~~~~~~~~~~~~F 67 (99)
T cd01220 1 EFIRQGCLLKLSKKGL--QQRMFFLFSDLLLYTSKSPTDQ-----------NSFRILGHLPLRGMLTEESEHEWGVPHCF 67 (99)
T ss_pred CeeeEEEEEEEeCCCC--ceEEEEEccceEEEEEeecCCC-----------ceEEEEEEEEcCceEEeeccCCcCCceeE
Confidence 6899999999988654 5999999999999999875433 38999999999999999999877789999
Q ss_pred EeecCCCCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17173 523 EIAPRDQPSIIIVTKSPEDKKSWFSDLIMVN 553 (1108)
Q Consensus 523 ~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~ 553 (1108)
+|.+. +++|+++|+|++||++||++|.++.
T Consensus 68 ~I~~~-~ks~~l~A~s~~Ek~~Wi~~i~~aI 97 (99)
T cd01220 68 TIFGG-QCAITVAASTRAEKEKWLADLSKAI 97 (99)
T ss_pred EEEcC-CeEEEEECCCHHHHHHHHHHHHHHh
Confidence 99976 6799999999999999999997753
No 44
>cd06224 REM Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also called REM domain (Ras exchanger motif). This domain is common in nucleotide exchange factors for Ras-like small GTPases and is typically found immediately N-terminal to the RasGef (Cdc25-like) domain. REM contacts the GTPase and is assumed to participate in the catalytic activity of the exchange factor. Proteins with the REM domain include Sos1 and Sos2, which relay signals from tyrosine-kinase mediated signalling to Ras, RasGRP1-4, RasGRF1,2, CNrasGEF, and RAP-specific nucleotide exchange factors, to name a few.
Probab=99.67 E-value=3.7e-16 Score=152.99 Aligned_cols=102 Identities=49% Similarity=0.829 Sum_probs=86.7
Q ss_pred CHHHHHHHHccCCC-CChhHHHHHHHhccccCCHHHHHHHHHHhcCCCCCCcccccCccchhhhhhHHHHHHHhhhccch
Q psy17173 611 TLHKLIERLTYHIY-ADPAFIGTFLTTYRSFTTPTELLDLLIDRFNVPDPNKVFENNNADIEESILREDIIRYKKELCQP 689 (1108)
Q Consensus 611 TL~kLIe~Lt~~~~-~D~~f~~~FLlTyrsFttp~~LL~~Li~Ry~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1108)
|+++||++||.+.. .|+.|+.+||+|||+|+||.+||++|++||+.+.+... + ...| ......+
T Consensus 1 tl~~Li~~L~~~~~~~d~~f~~~FllTyrsF~s~~~ll~~L~~rf~~~~~~~~--~----------~~~~---~~~~~~~ 65 (122)
T cd06224 1 TLEALIEHLTSTFDMPDPSFVSTFLLTYRSFTTPTELLEKLIERYEIAPPENL--E----------YNDW---DKKKSKP 65 (122)
T ss_pred CHHHHHHHHcCCCccccHHHHHHHHHHhhhhCCHHHHHHHHHHHhCCCCCCcc--c----------HHHH---HHHHHHH
Confidence 79999999999876 89999999999999999999999999999999876431 0 1112 2233457
Q ss_pred hhhHHHHHHHHHHhhcccccccCHHHHHHHHHHHhhhc
Q psy17173 690 VQFRVLNVFRQWVQHHFYDFQRDQNLLEKLKSFLLNEI 727 (1108)
Q Consensus 690 vq~rVl~vl~~Wi~~~~~DF~~d~~ll~~L~~Fl~~~v 727 (1108)
+|.||++++++|+++||+||..|+.+++.|.+|++...
T Consensus 66 ~~~~v~~~l~~Wv~~~~~df~~d~~l~~~l~~F~~~~~ 103 (122)
T cd06224 66 IRLRVLNVLRTWVENYPYDFFDDEELLELLEEFLNRLV 103 (122)
T ss_pred HHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHc
Confidence 89999999999999999999889999999999999544
No 45
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.63 E-value=2.9e-15 Score=141.45 Aligned_cols=99 Identities=15% Similarity=0.423 Sum_probs=85.3
Q ss_pred ceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCccccccE
Q psy17173 443 EFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNAF 522 (1108)
Q Consensus 443 ~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~~aF 522 (1108)
+||+||.|.|.+.+.+.+++||+|||||+||+|+++... ....|++++.++++++.|.+.. ....+|+|
T Consensus 1 e~ikeG~L~K~~~~~~~~k~RyffLFnd~Ll~~~~~~~~----------~~~~y~~~~~i~l~~~~v~~~~-~~~~~~~F 69 (101)
T cd01219 1 ELLKEGSVLKISSTTEKTEERYLFLFNDLLLYCVPRKMI----------GGSKFKVRARIDVSGMQVCEGD-NLERPHSF 69 (101)
T ss_pred CcccceEEEEEecCCCCceeEEEEEeCCEEEEEEccccc----------CCCcEEEEEEEecccEEEEeCC-CCCcCceE
Confidence 589999999999887777899999999999999975431 2247999999999999998764 44679999
Q ss_pred EeecCCCCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17173 523 EIAPRDQPSIIIVTKSPEDKKSWFSDLIMVN 553 (1108)
Q Consensus 523 ~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~ 553 (1108)
.|.+.+ .+|+++|+|++||++||++|.++.
T Consensus 70 ~I~~~~-rsf~l~A~s~eEk~~W~~ai~~~i 99 (101)
T cd01219 70 LVSGKQ-RCLELQARTQKEKNDWVQAIFSII 99 (101)
T ss_pred EEecCC-cEEEEEcCCHHHHHHHHHHHHHHh
Confidence 998874 799999999999999999998764
No 46
>PLN00155 histone H2A; Provisional
Probab=99.62 E-value=1.9e-16 Score=128.15 Aligned_cols=45 Identities=27% Similarity=0.466 Sum_probs=42.9
Q ss_pred HHcCCCCCCcccchhHHHhhHhhccccccccCCchHHHHHHHHHH
Q psy17173 104 LEKGKKKSSLVISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYV 148 (1108)
Q Consensus 104 ~~~~~~r~~l~fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl 148 (1108)
..++|+||||||||+||||+||+|+|+.||+++||||||||||||
T Consensus 14 ~~srS~rAgL~FPVgri~r~Lr~g~~a~Rvga~apVYlAAVLEYL 58 (58)
T PLN00155 14 AVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYL 58 (58)
T ss_pred ccCcccccccccchHHHHHHHhcCChhhcccCCcHHHHHHHHHhC
Confidence 357889999999999999999999999999999999999999997
No 47
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.57 E-value=2e-14 Score=133.14 Aligned_cols=92 Identities=16% Similarity=0.375 Sum_probs=80.5
Q ss_pred cceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCcccccc
Q psy17173 442 EEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNA 521 (1108)
Q Consensus 442 r~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~~a 521 (1108)
++|++||.+.....+ ++||+|||+++||+||+... .|+||.+|.++++.|.+..+++ .++
T Consensus 2 geLlleg~l~~~~~~----~eR~vFLFe~~ll~~K~~~~--------------~y~~K~~i~~~~l~i~e~~~~d--~~~ 61 (97)
T cd01222 2 GDLLLEGRFREHGGG----KPRLLFLFQTMLLIAKPRGD--------------KYQFKAYIPCKNLMLVEHLPGE--PLC 61 (97)
T ss_pred CceeeeceEEeecCC----CceEEEEecccEEEEEecCC--------------eeEEEEEEEecceEEecCCCCC--CcE
Confidence 589999999966654 48999999999999998654 7999999999999999987765 689
Q ss_pred EEeecCCCC--eEEEEeCCHHHHHHHHHHHHHHH
Q psy17173 522 FEIAPRDQP--SIIIVTKSPEDKKSWFSDLIMVN 553 (1108)
Q Consensus 522 F~I~~~~~~--~~~l~a~s~eeK~~Wm~~L~~l~ 553 (1108)
|.|.+.+++ +++|+|+|+++|+.||++|.++.
T Consensus 62 F~v~~~~~p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 62 FRVIPFDDPKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred EEEEecCCCceEEEEEecCHHHHHHHHHHHHHHh
Confidence 999877543 89999999999999999998753
No 48
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.53 E-value=2.5e-14 Score=134.45 Aligned_cols=104 Identities=17% Similarity=0.317 Sum_probs=85.3
Q ss_pred cceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecC--CCc---
Q psy17173 442 EEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYE--NTD--- 516 (1108)
Q Consensus 442 r~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~--d~~--- 516 (1108)
++++.+|+|.+......+.++||+||||.+||+||++.... ..++|.||+.+.|.++.|.+.. |++
T Consensus 2 GR~~~DGelk~k~~~~~k~k~RyiFLFDk~lI~CK~~~~~~---------~~~~Y~~Ke~~~l~~~~I~~~~~~d~~~~~ 72 (116)
T cd01223 2 GRPLLDGEVRIKASEDQKTKLRYIFLFDKAVIVCKALGDNT---------GDMQYTYKDIHDLADYKIENNPSRDTEGRD 72 (116)
T ss_pred CccccCCceEEeEeccCCCceeEEEEecceEEEEEecCCCC---------CCccEEhHHhhhhheeeeEecCccCcccCC
Confidence 47888999987666434346999999999999999875521 1468999999999998887754 554
Q ss_pred -cccccEEeecCCC-CeEEEEeCCHHHHHHHHHHHHHHHh
Q psy17173 517 -DIKNAFEIAPRDQ-PSIIIVTKSPEDKKSWFSDLIMVNT 554 (1108)
Q Consensus 517 -~~~~aF~I~~~~~-~~~~l~a~s~eeK~~Wm~~L~~l~~ 554 (1108)
.++|+|.|...++ ..++|+|+|+|+|++||++|.++.+
T Consensus 73 ~~~~~~f~L~~~~~~~~~~f~~Ktee~K~kWm~al~~a~s 112 (116)
T cd01223 73 TRWKYGFYLAHKQGKTGFTFYFKTEHLRKKWLKALEMAMS 112 (116)
T ss_pred cceEEEEEEEecCCCccEEEEeCCHHHHHHHHHHHHHHHh
Confidence 4789999998875 6899999999999999999988654
No 49
>KOG3417|consensus
Probab=99.49 E-value=8.2e-14 Score=177.81 Aligned_cols=223 Identities=22% Similarity=0.364 Sum_probs=179.3
Q ss_pred CHHHHHHHHhHHHHHHhcCCChhhhhcccccCCCCCCCCchHHHHHHHHhhHhhHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy17173 783 HPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMTRIIEMM 862 (1108)
Q Consensus 783 ~p~eiA~QLTl~e~~lf~~I~~~Ell~~~w~k~~~~~~~pni~~~i~~fn~ls~wv~~~IL~~~~~~~Ra~~i~kfI~vA 862 (1108)
...+++.++|+++..++-.+...+.. .|.+......+++...+..+++..+.|+...|........| ||+++
T Consensus 609 ~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~s------~~~~~ 680 (840)
T KOG3417|consen 609 KSAEIACQLTLLDAILTMEICIPRSL--LWAKVQNEEKSKKDLAFTETFNLVSFWSSTIILTQQPAKRS------FIHVA 680 (840)
T ss_pred hHHHHHhhhhhhhhHhhhchhhhhHH--HHhhhhhcccccchHHHHHHHhhhhhhhHHhhhccccccch------hHHHH
Confidence 66788889999988888777666655 56655566678889999999999999999999888777666 99999
Q ss_pred HHHhhcCChhHHHHHHHhhcccccccchhhhhcCChHHHHHHHHHHhh---hhhhHHHHHHHHhcCCCCcccchhhhHhH
Q psy17173 863 IVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDAREL---NGDHFKKYQEKLRNINPPCIPFFGMYLTN 939 (1108)
Q Consensus 863 ~~~~~l~NFns~~aI~sgL~s~~I~RLk~Tw~~l~~~~~k~l~~l~~l---~~~n~~~yR~~l~~~~~p~IPflGv~L~D 939 (1108)
.+|..++||.+++++.++|.+++++|+..+|....++....+..+..+ ..+++..||..+....+|||||+|++|+|
T Consensus 681 ~~~~~~~~~~~l~~~~s~l~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~cvP~~~~~l~d 760 (840)
T KOG3417|consen 681 KFCKIMKNFRTLMNINSALASSPIHRSTPLWRLEWPKDIREFSALSPLVIDKSNSSTYRRALLSVPEPPCVPFLGVILQD 760 (840)
T ss_pred hhhhhhCchhhhhHHHHHhccchhhhcchhhcccchhhHHHhhccccchhcccccHHHHHHHhcCCCCCCcCceeEEeec
Confidence 999999999999999999999999999999999999988888877766 23444555555656899999999999999
Q ss_pred HHHHHhcCCCCCCC-CCcccHHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHhcCCCCCCCchhhHHHHHHHhhhcc
Q psy17173 940 ILHIEEGNPDFLPD-SKLINFTKRRKVAEIISEIQQYQNEPYCLSVVPIYREFFENLSPFEGIDDNEMCNILFEQSLLIE 1018 (1108)
Q Consensus 940 L~~i~egnp~~~~~-~~lINf~K~r~i~~ii~~i~~~Q~~~Y~~~~~~~i~~~l~~l~~~~~~~e~e~~d~ly~~Sl~iE 1018 (1108)
|+|.++||||++++ ...+||.|+..+..+++.++.+|-..|.+......+..+.... .++ +..++++.+-
T Consensus 761 ltf~~~gnpd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~----~~~~~~~~~~ 831 (840)
T KOG3417|consen 761 LTFVHTGNPDYLDSVVNHGKFDKRTNIKDIVQEVQKFQYVGYKVNPIIDFQNDINKSL-----REE----EKWELSLKIK 831 (840)
T ss_pred ceeecCCCCCccccccchhHHHHHHHHHHHHHHHHHhcccccccCcchhhhhHHHHHH-----HHH----HHHHHHHhhh
Confidence 99999999999862 2467777877888888888888877777777766666665421 222 3677777776
Q ss_pred CCCC
Q psy17173 1019 PRHA 1022 (1108)
Q Consensus 1019 Pr~~ 1022 (1108)
||+.
T Consensus 832 ~~~~ 835 (840)
T KOG3417|consen 832 PRVE 835 (840)
T ss_pred cccc
Confidence 6653
No 50
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.48 E-value=8.2e-14 Score=124.88 Aligned_cols=95 Identities=17% Similarity=0.337 Sum_probs=80.7
Q ss_pred cceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCcccccc
Q psy17173 442 EEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNA 521 (1108)
Q Consensus 442 r~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~~a 521 (1108)
|+|+++|.|++++.++++ .|++|||||+|||++-...+. ....+|.++..|||.++.+.+. +
T Consensus 1 r~Lv~eg~lvel~~~~rK--~R~~FLFnDlLvc~~ik~~~~--------~k~~kY~~~w~IPL~dl~~~~~--------~ 62 (96)
T cd01228 1 RQLVKDSFLVELVEGSRK--LRHLFLFTDVLLCAKLKKTSR--------GKHQQYDCKWYIPLADLSFPSE--------P 62 (96)
T ss_pred CcccccceeeeehhCCCc--ceEEEeeccEEEEEEeeeccC--------ccccccceeEEEEhHHheecch--------h
Confidence 579999999999988776 999999999999999754311 1225899999999999999776 3
Q ss_pred EEeecCCCCeEEEEeCCHHHHHHHHHHHHHHHh
Q psy17173 522 FEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVNT 554 (1108)
Q Consensus 522 F~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~~ 554 (1108)
|.+..+.+++|+|+|+|+.||.+||++|..+|.
T Consensus 63 ~~~~~~~~KSf~~~asS~~Er~eW~~hI~~~~~ 95 (96)
T cd01228 63 FRIHNKNGKSYTFLLSSDYERSEWRESIQKLQK 95 (96)
T ss_pred hhccccCCceEEEEecCHHHHHHHHHHHHHHhc
Confidence 677677788999999999999999999988875
No 51
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.46 E-value=4.9e-13 Score=127.68 Aligned_cols=105 Identities=21% Similarity=0.319 Sum_probs=86.8
Q ss_pred cceeeeeeeEEEeCCC---CcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCccc
Q psy17173 442 EEFYREDTLMKYDGKS---NRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDI 518 (1108)
Q Consensus 442 r~li~eG~L~k~~~~~---~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~ 518 (1108)
++||++|.+..+.++. ++.++|++|||+++||+||+...++ +.++..|.||..++++++.+.+..+++++
T Consensus 3 G~Ll~Q~~f~v~~~~~~~~~K~~eR~vFLFe~~lvfsk~~~~~~-------~~~~~~Y~yK~~ikls~l~l~e~v~gd~~ 75 (114)
T cd01232 3 GKLLLQDTFQVWDPKAGLIQKGRERRVFLFEQSIIFAKEVKKKK-------QFGNPKYIYKSKLQVSKMGLTEHVEGDPC 75 (114)
T ss_pred CceEEEccEEEEeCCccccCCCceeEEEEeeceEEEEEEeccCC-------CCCceeEEEecceeeeeeEeEEccCCCCc
Confidence 4899999999888753 3447999999999999999875422 22456899999999999999999999888
Q ss_pred cccEEeecCC--CCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17173 519 KNAFEIAPRD--QPSIIIVTKSPEDKKSWFSDLIMVN 553 (1108)
Q Consensus 519 ~~aF~I~~~~--~~~~~l~a~s~eeK~~Wm~~L~~l~ 553 (1108)
++++....+. ..+|+++|.|+++|+.|+.+|.++.
T Consensus 76 kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il 112 (114)
T cd01232 76 RFALWSGDPPISDNRIILKANSQETKQEWVKKIREIL 112 (114)
T ss_pred eEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHHHHh
Confidence 7666665543 3589999999999999999998864
No 52
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.30 E-value=1.7e-11 Score=112.99 Aligned_cols=95 Identities=17% Similarity=0.287 Sum_probs=83.1
Q ss_pred eeeeeeeEEEeCCCCccee-EEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCccccccE
Q psy17173 444 FYREDTLMKYDGKSNRLTE-RKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNAF 522 (1108)
Q Consensus 444 li~eG~L~k~~~~~~~~~e-r~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~~aF 522 (1108)
+|++|.|.....+.++... .++|||||+||++.....+ +|++...++|.++.|.+++|++..+|+|
T Consensus 2 ~i~~G~l~e~~~~~~kp~~rv~~FLfND~Lvva~~~~~~-------------ky~~~~~~~L~~i~V~ni~D~~~~kNaf 68 (100)
T cd01226 2 VILYGELEEFDVETKKPVQRVMLFLLNDRLIVGNINAAG-------------KYVMESTYSLNSVAVVNVKDRENAKKVL 68 (100)
T ss_pred EEEcCcEEEechhhCCccceEEEEEeccEEEEEEecccc-------------eEEEEEEEehHHeEEEecCCCcCcCceE
Confidence 7899999999887665444 4599999999999887531 7999999999999999999999999999
Q ss_pred EeecCCCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17173 523 EIAPRDQPSIIIVTKSPEDKKSWFSDLIMV 552 (1108)
Q Consensus 523 ~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l 552 (1108)
.|... ..+++++|.|+++|.+||+.|..+
T Consensus 69 ki~t~-~~s~i~qaes~~~K~eWl~~le~a 97 (100)
T cd01226 69 KLLIF-PESRIYQCESARIKTEWFEELEQA 97 (100)
T ss_pred EEEeC-CccEEEEeCCHHHHHHHHHHHHHH
Confidence 99976 457899999999999999999764
No 53
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.29 E-value=3.1e-11 Score=117.90 Aligned_cols=107 Identities=16% Similarity=0.315 Sum_probs=84.0
Q ss_pred cceeeeeeeEEEeCCC----------CcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEee
Q psy17173 442 EEFYREDTLMKYDGKS----------NRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEIND 511 (1108)
Q Consensus 442 r~li~eG~L~k~~~~~----------~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d 511 (1108)
++||++|.+..+.+.+ .+.++||+|||++++|+||+..... .+..+..|.||..+.++++.+.+
T Consensus 1 G~ll~Qd~f~Vw~~~~~~~~~k~~~r~K~~eRhVFLFE~~viF~K~~~~~~------~~~~~p~Y~yK~~ikls~lglte 74 (133)
T cd01227 1 GKLLMQGSFSVWTDHKKGHTKKELARFKPMQRHIFLHEKAVLFCKKREENG------EGEKAPSYSFKQSLKMTAVGITE 74 (133)
T ss_pred CCceEecceEEEEccccccchhhhhccCCceeEEEEecceEEEEEEeccCC------CCCcceeEEEeeeEEeecccccc
Confidence 3799999999876532 1236999999999999999875321 12345689999999999999988
Q ss_pred cCCCccccccEEeecCC-CCeEEEEeCCHHHHHHHHHHHHHHHhhH
Q psy17173 512 YENTDDIKNAFEIAPRD-QPSIIIVTKSPEDKKSWFSDLIMVNTKS 556 (1108)
Q Consensus 512 ~~d~~~~~~aF~I~~~~-~~~~~l~a~s~eeK~~Wm~~L~~l~~~s 556 (1108)
..+++ ...|+|..++ ...|+++|+|++.|+.|+++|.++..+.
T Consensus 75 ~v~gd--~~kFeiw~~~~~~~yilqA~t~e~K~~Wv~~I~~iL~~Q 118 (133)
T cd01227 75 NVKGD--TKKFEIWYNAREEVYILQAPTPEIKAAWVNEIRKVLTSQ 118 (133)
T ss_pred cCCCC--ccEEEEEeCCCCcEEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence 76665 4567777655 4489999999999999999999974443
No 54
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.21 E-value=1.5e-10 Score=107.54 Aligned_cols=107 Identities=23% Similarity=0.387 Sum_probs=88.2
Q ss_pred CCcccccccccceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEee
Q psy17173 432 VDVRDLRPYLEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEIND 511 (1108)
Q Consensus 432 ~~~~~l~~~~r~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d 511 (1108)
|+|.++.. .+..|+-+.+...........|||++||...|+++..+.+.+ .|.|++++|++++.|+.
T Consensus 1 Weg~~i~~-lG~vi~mS~V~~~~~~~qe~~eRyLvLFp~~LlilS~s~r~s------------Gf~yqGkLPL~~i~v~~ 67 (111)
T cd01225 1 WEGQDIKT-LGNVIHMSQVAVQYGAGEEKRERYLVLFPNVLLMLSASPRMS------------GFIYQGKLPLTGIIVTR 67 (111)
T ss_pred CCCcchhh-cCceEEEEEEEEecCCccccceeEEEEcCceEEEEEcCCCcc------------ceEEeeeecccccEEec
Confidence 66755443 235666666655434333336999999999999999987755 69999999999999999
Q ss_pred cCCCccccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHH
Q psy17173 512 YENTDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIM 551 (1108)
Q Consensus 512 ~~d~~~~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~ 551 (1108)
.+|+++.+|+|+|.+..-+.+++.|.+.+|.++||..|..
T Consensus 68 lEd~e~~~~aFeI~G~li~~i~v~C~~~~e~~~Wl~hL~~ 107 (111)
T cd01225 68 LEDTEALKNAFEISGPLIERIVVVCNNPQDAQEWVELLNA 107 (111)
T ss_pred hHhccCccceEEEeccCcCcEEEEeCCHHHHHHHHHHHHh
Confidence 9999999999999998888999999999999999998865
No 55
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.18 E-value=1.5e-10 Score=111.49 Aligned_cols=96 Identities=16% Similarity=0.322 Sum_probs=76.9
Q ss_pred cceeeeeeeEEEeCCC-------C-cceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecC
Q psy17173 442 EEFYREDTLMKYDGKS-------N-RLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYE 513 (1108)
Q Consensus 442 r~li~eG~L~k~~~~~-------~-~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~ 513 (1108)
|+|++.|+|..+...+ + ..+.+|+|||||+||+||++.+ ..|.+....+.+.+.|.+.+
T Consensus 1 RwLvK~GEL~~l~~~~~~~~~~~k~~~~~vylfLFnDlLl~tkkK~~-------------~~f~V~dy~~r~~l~V~~~e 67 (125)
T cd01221 1 RWLVKRGELTQLEERGSSNILRKKLKARTIYLFLFNDLLLITKKKLG-------------STFVVFDYAPRSFLRVEKIE 67 (125)
T ss_pred CceEEEeeEEEEeccCCcchhcccccCCcEEEEEecceEEEEEecCC-------------CeEEEEeeccccceEEeecc
Confidence 6899999999875421 1 1258999999999999998764 38999999999999998877
Q ss_pred CCc----------cccccEEeec----CC-CCeEEEEeCCHHHHHHHHHHHH
Q psy17173 514 NTD----------DIKNAFEIAP----RD-QPSIIIVTKSPEDKKSWFSDLI 550 (1108)
Q Consensus 514 d~~----------~~~~aF~I~~----~~-~~~~~l~a~s~eeK~~Wm~~L~ 550 (1108)
+.+ ..+|.|.+.- .+ ...++|.|.|++||.+||++|.
T Consensus 68 ~~~~~~~~~~~~~~~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 68 PDNQKIPLGSNLVGRPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA 119 (125)
T ss_pred cccccccccccccCCCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence 653 3689999971 11 2379999999999999999984
No 56
>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]. Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....
Probab=98.93 E-value=6.5e-10 Score=99.20 Aligned_cols=73 Identities=18% Similarity=0.395 Sum_probs=68.8
Q ss_pred CCCCCcccchhHHHhhHhhccccc-cccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhcC
Q psy17173 108 KKKSSLVISIDRVQNILQKEFYFR-KVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMYAD 180 (1108)
Q Consensus 108 ~~r~~l~fpv~~~~~~l~~~~~~~-r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~~D 180 (1108)
+++.++.||+.|+.+.+..+.+.. |++++|.+||.+++||++.+|+++|++++...++..|+|+|+++|++.|
T Consensus 2 ~~~~~~~~~~~r~~r~i~~~~~~~~ris~~a~~~L~~~~E~~~~~il~~A~~~a~~~kR~tI~~~DI~~A~r~~ 75 (75)
T PF00125_consen 2 TRRLIPKFPFSRLLREIGEEILSKYRISSEALVALQSVLEYLLVEILEEAGNLARHAKRKTITPRDIQLAVRID 75 (75)
T ss_dssp HSHSSSHHHHHHHHHHHHHTTSSSSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBSEEGHHHHHHHHHHT
T ss_pred cccccCceEEeeeeehhhcccccccccccccchhhhhhhhhhhhhhhhHHHHHHhhcCCcEecHHHHHHHHhcC
Confidence 457788999999999999888884 9999999999999999999999999999999999999999999999875
No 57
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=98.72 E-value=1.6e-07 Score=87.88 Aligned_cols=97 Identities=24% Similarity=0.314 Sum_probs=83.9
Q ss_pred eeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCC-----cccc
Q psy17173 445 YREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENT-----DDIK 519 (1108)
Q Consensus 445 i~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~-----~~~~ 519 (1108)
+++|.|.+.+...+.++.||++|+++.|++++...... ....+..++|.++.|.+..+. ....
T Consensus 2 ~~~G~L~~~~~~~~~wk~r~~vL~~~~L~~~~~~~~~~------------~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~ 69 (104)
T PF00169_consen 2 IKEGWLLKKSSSRKKWKKRYFVLRDSYLLYYKSSKDKS------------DSKPKGSIPLDDCTVRPDPSSDFLSNKKRK 69 (104)
T ss_dssp EEEEEEEEEESSSSSEEEEEEEEETTEEEEESSTTTTT------------ESSESEEEEGTTEEEEEETSSTSTSTSSSS
T ss_pred EEEEEEEEECCCCCCeEEEEEEEECCEEEEEecCcccc------------ceeeeEEEEecCceEEEcCccccccccCCC
Confidence 78999998886666778999999999999999877422 566778899999999998877 3678
Q ss_pred ccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17173 520 NAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVN 553 (1108)
Q Consensus 520 ~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~ 553 (1108)
+.|.|...++.++.|.|.|+++++.|+++|..+.
T Consensus 70 ~~f~i~~~~~~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 70 NCFEITTPNGKSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp SEEEEEETTSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence 9999999877899999999999999999998754
No 58
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=98.47 E-value=1.4e-06 Score=80.34 Aligned_cols=96 Identities=25% Similarity=0.411 Sum_probs=78.9
Q ss_pred eeeeeeEEEeC-CCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCc--ccccc
Q psy17173 445 YREDTLMKYDG-KSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTD--DIKNA 521 (1108)
Q Consensus 445 i~eG~L~k~~~-~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~--~~~~a 521 (1108)
+++|.|.+... ....+++||++|+++.|.+++...... .......+++.++.|....+.+ ...+.
T Consensus 2 ~~~G~l~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~------------~~~~~~~i~l~~~~v~~~~~~~~~~~~~~ 69 (102)
T smart00233 2 IKEGWLYKKSGGKKKSWKKRYFVLFNSTLLYYKSEKAKK------------DYKPKGSIDLSGITVREAPDPDSAKKPHC 69 (102)
T ss_pred ceeEEEEEeCCCccCCceEEEEEEECCEEEEEeCCCccc------------cCCCceEEECCcCEEEeCCCCccCCCceE
Confidence 67899988776 344568999999999999999876522 2566778899999888877764 56899
Q ss_pred EEeecCCCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17173 522 FEIAPRDQPSIIIVTKSPEDKKSWFSDLIMV 552 (1108)
Q Consensus 522 F~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l 552 (1108)
|.|...++..+.|.|.|+++++.|+.+|..+
T Consensus 70 f~l~~~~~~~~~f~~~s~~~~~~W~~~i~~~ 100 (102)
T smart00233 70 FEIKTADRRSYLLQAESEEEREEWVDALRKA 100 (102)
T ss_pred EEEEecCCceEEEEcCCHHHHHHHHHHHHHh
Confidence 9999887779999999999999999999764
No 59
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=98.44 E-value=5.2e-07 Score=89.58 Aligned_cols=100 Identities=17% Similarity=0.250 Sum_probs=54.6
Q ss_pred eeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEE-EEeeccCeEEeecCCCcc-----
Q psy17173 444 FYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCK-EMYFLRKVEINDYENTDD----- 517 (1108)
Q Consensus 444 li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k-~~i~l~~~~I~d~~d~~~----- 517 (1108)
||++|.|.+-++++..+.|.++||||++||+||.+..++. .+|++. ..|||.-+.|...+|...
T Consensus 1 Li~~G~L~Rk~~~~~~~~di~~~LFDh~Lll~K~k~~~k~----------e~ykV~r~PIPLeLL~l~~~~d~~~~~~~~ 70 (135)
T PF15405_consen 1 LIYKGDLKRKGDNSFNWVDIHVYLFDHYLLLTKPKKVNKR----------EQYKVYRRPIPLELLVLESMDDPPPQRSIA 70 (135)
T ss_dssp ----------------S-EEEEEEESSEEEEEEEEEETTE----------EEEEESS--EEGGG-EEEE--TTTS-----
T ss_pred CccccccccccccccccceeEEEeeccEEEEEEEEecCCe----------EEEEEEECCcCHHHeeeecccCCCcccCcc
Confidence 5889999988777655569999999999999998754322 377775 478988888876443211
Q ss_pred ---------------------------ccccEEee--cCCCCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17173 518 ---------------------------IKNAFEIA--PRDQPSIIIVTKSPEDKKSWFSDLIMVN 553 (1108)
Q Consensus 518 ---------------------------~~~aF~I~--~~~~~~~~l~a~s~eeK~~Wm~~L~~l~ 553 (1108)
..+.|.+. ++.+.+++|+|.|+.+|+.|+++|...|
T Consensus 71 ~r~s~s~~~~~~~~~~~~~~~~~~~~~~~yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~qq 135 (135)
T PF15405_consen 71 KRPSSSLISSSSSNSNSPSNPNSSDSKSLYPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQQ 135 (135)
T ss_dssp ----S-------SHHHH--------TSSEEEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH-
T ss_pred cccccCccCCccCCCCccceeeeccCCCccCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhcC
Confidence 12345554 3334478999999999999999997654
No 60
>PF15411 PH_10: Pleckstrin homology domain
Probab=98.42 E-value=1.8e-06 Score=83.26 Aligned_cols=104 Identities=17% Similarity=0.271 Sum_probs=76.4
Q ss_pred cceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccc----cccccCcceeEEEEEeeccCeEEeecCC-Cc
Q psy17173 442 EEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVP----INVVSSQYEFKCKEMYFLRKVEINDYEN-TD 516 (1108)
Q Consensus 442 r~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~----~~~~~~~~~y~~k~~i~l~~~~I~d~~d-~~ 516 (1108)
++|+..|.+....++. .+|+++|||+.+|||||..+..+.... ...+.....+.+|++|.++++. +..+ +.
T Consensus 5 G~Lll~g~~~V~k~~~--erE~~vYLFe~illc~kE~~~~~~~~~~~~~~~~~~~~~~L~LKGrI~i~~i~--~v~~~s~ 80 (116)
T PF15411_consen 5 GELLLHGTLTVGKDDS--EREYEVYLFEKILLCCKEVKPKKKKSKQISSKKKKKKKTKLQLKGRIYISNIT--EVSSSSK 80 (116)
T ss_pred cceEEccEEEEEeCCc--ceeeeeeeeeeeEEEEecCccCccchhhcccccccCCCceEEEeeEEEEEeee--eeeccCC
Confidence 4899999999887644 369999999999999998865443211 1124567799999999999653 3332 22
Q ss_pred cccccEEeecCC---CCeEEEEeCCHHHHHHHHHHH
Q psy17173 517 DIKNAFEIAPRD---QPSIIIVTKSPEDKKSWFSDL 549 (1108)
Q Consensus 517 ~~~~aF~I~~~~---~~~~~l~a~s~eeK~~Wm~~L 549 (1108)
...+...|.-++ -..|++.++|+++.+.|-.+|
T Consensus 81 ~g~~~L~i~w~~d~e~~~F~lrf~nee~l~~W~~~L 116 (116)
T PF15411_consen 81 PGSYSLQISWKGDPELENFTLRFRNEEQLEQWRSAL 116 (116)
T ss_pred CCceEEEEEEcCCCCCceEEEEeCCHHHHHHHHhhC
Confidence 345677777532 348999999999999998764
No 61
>KOG4269|consensus
Probab=98.22 E-value=5.7e-07 Score=107.95 Aligned_cols=249 Identities=15% Similarity=0.221 Sum_probs=174.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC----CCHHhHhhhccCHHHHHHHHHHHHHHHHHhhccCCCCCcchhH
Q psy17173 213 VVNDFVAEEKLFIRELKLILKIFYEELNKITPL----KEIKEVHSLFEIIEEIYNLTVCLLGAVEDISEMSSDDHCIGSC 288 (1108)
Q Consensus 213 vi~ELi~TEr~Yv~~L~~ii~~f~~pl~~~~~l----~~~~~i~~IFsNIeeI~~~~~~fL~~Le~~~~~~~~~~~IG~~ 288 (1108)
+--.+...|..|.+.|+.++ .=++|++..... .....++.||--+.+||.+|..|...|....+.|..+.+.|..
T Consensus 336 ~dS~f~~~d~~~~~s~d~l~-l~~~p~~al~~tsqp~~~~~~~~t~~~k~s~i~~~hk~~~~~l~pk~q~~~sqs~~~~~ 414 (1112)
T KOG4269|consen 336 VDSGFLASDEHYSQSLDALL-LPMKPLKALATTSQPVLTKQQIETIFNKFSPIYEIHKEFYDNLHPKVQQWKSQSNSGGL 414 (1112)
T ss_pred Hhcccccccchhhcccchhh-cccccccccCCCCCCCccccccccccccCCCchhhhhhhccccCchhhhhhhhhccCcc
Confidence 44456677888999887763 223444443221 2337889999999999999999999999999999999999999
Q ss_pred HHhhhhcccchhHHHHHhh--hccHHHHHHHHHHhcC-hhhHHHHHHhcccccccc---------cccccccccccccch
Q psy17173 289 FEEFAEDAEFDVYEKLLHN--IVNQKSIEVLSMHVTQ-PSILNTLQFAGYGFKECV---------KYYLPNLLMSPLYHC 356 (1108)
Q Consensus 289 F~~~a~~~~f~~Y~~Yc~N--~~~~~a~~~l~~l~~~-~~~~~~~~~~~~~~~~~~---------~~~L~slLi~PvQRI 356 (1108)
|..++- .+-.|..+..| |. .+.+.-..+... +.+. -..+.+.-.+ .-+....|-+|+-|+
T Consensus 415 ~~~L~S--~l~n~~af~~~~sy~--~al~~~~~~~sss~qfq----~i~~~~~~~~n~~s~~sst~~~~~~~l~rpi~~~ 486 (1112)
T KOG4269|consen 415 FQKLAS--QLGNYLAFVDNESYL--VALEMAEKCASSSPQFQ----CISEQLVVGVNKDSKDSSTWKDEEWLLYRPIDRV 486 (1112)
T ss_pred chhhhh--hcchhhhhhcchhhh--hhcccccchhhcchhhh----hhhhhheecccccccccCCccchhhhhccchhhh
Confidence 999864 46789999988 52 333322222221 2222 1111111110 123556899999999
Q ss_pred HhHHHHHHHHHhcCCCCc-hHH----------HHHHHHHHHHHHHHHHhhhhhhhcCcccccchhhhhhhHHHHHHHHHH
Q psy17173 357 NLYFEYIKIFHSLTDSSK-DKE----------CLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHEL 425 (1108)
Q Consensus 357 ~rY~LLLkeLlK~Tp~~h-D~~----------~L~~A~~~~~~v~~~ine~~~~k~~~~~~~~~~e~~rk~~~~~kl~ei 425 (1108)
.+..+-|-++|||+|-.| |+- -|+.|+.....+...||+...+ | +|.+.
T Consensus 487 ~ss~~s~~~~lk~ppf~~pd~f~~~~~~i~~~Llrda~d~~~~~is~id~k~~~--------------~------r~~~f 546 (1112)
T KOG4269|consen 487 TSSTLSLHDLLKHPPFPHPDWFTNDSSVIQNELLRDALDISQNFISSIDEKIEP--------------R------RLLEF 546 (1112)
T ss_pred hHHHHHHHHHhCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHhhcccch--------------h------hhhhh
Confidence 999999999999999999 886 8888888888888888876111 1 22211
Q ss_pred HhhccCCCcccccccccceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeecc
Q psy17173 426 KKNVDGVDVRDLRPYLEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLR 505 (1108)
Q Consensus 426 q~~I~g~~~~~l~~~~r~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~ 505 (1108)
-+++ ..|++++++-+..+....++ -|++|||.+.++++|-.+.+. +.+..|.+++.|++.
T Consensus 547 ~ks~----------~~rq~L~d~f~~~v~~~~~~--~~~~~~~~~~ll~tk~~~~k~--------~~nq~y~~~~~Ipl~ 606 (1112)
T KOG4269|consen 547 LKSG----------ELRQLLKDVFFVEVEEAQRK--LRHVFLFTNSLLCTKLKKLKD--------GKNQQYDCKWYIPLK 606 (1112)
T ss_pred cccc----------hhHhhhhhheeecccccccc--chhhHHHhhccchhhhhhhcc--------cccccCceeEEEecc
Confidence 1111 23688888888877766554 799999999999999776432 245688999998888
Q ss_pred CeEEe
Q psy17173 506 KVEIN 510 (1108)
Q Consensus 506 ~~~I~ 510 (1108)
+..|.
T Consensus 607 d~~v~ 611 (1112)
T KOG4269|consen 607 DLQVN 611 (1112)
T ss_pred ccccC
Confidence 77653
No 62
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.21 E-value=5.1e-06 Score=75.68 Aligned_cols=93 Identities=26% Similarity=0.398 Sum_probs=73.7
Q ss_pred eeeeEEEeCCC-CcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCccccccEEee
Q psy17173 447 EDTLMKYDGKS-NRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNAFEIA 525 (1108)
Q Consensus 447 eG~L~k~~~~~-~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~~aF~I~ 525 (1108)
+|.|.+..... ..++.||++|+++.|.+++...... .+.....++|.++.|....+.+...++|.|.
T Consensus 2 ~G~l~~~~~~~~~~w~~~~~~L~~~~l~~~~~~~~~~------------~~~~~~~i~l~~~~v~~~~~~~~~~~~f~i~ 69 (96)
T cd00821 2 EGYLLKKTGKLRKGWKRRWFVLFNDLLLYYKKKSSKK------------SYKPKGSIPLSGAEVEESPDDSGRKNCFEIR 69 (96)
T ss_pred cchhhhhhChhhCCccEEEEEEECCEEEEEECCCCCc------------CCCCcceEEcCCCEEEECCCcCCCCcEEEEe
Confidence 45665544432 3447999999999999998775421 2456678889999998888876678999999
Q ss_pred cCCCCeEEEEeCCHHHHHHHHHHHHH
Q psy17173 526 PRDQPSIIIVTKSPEDKKSWFSDLIM 551 (1108)
Q Consensus 526 ~~~~~~~~l~a~s~eeK~~Wm~~L~~ 551 (1108)
...+..+.|.|.|++++..|+++|..
T Consensus 70 ~~~~~~~~~~~~s~~~~~~W~~~l~~ 95 (96)
T cd00821 70 TPDGRSYLLQAESEEEREEWIEALQS 95 (96)
T ss_pred cCCCcEEEEEeCCHHHHHHHHHHHhc
Confidence 87668999999999999999999864
No 63
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.12 E-value=2.7e-05 Score=71.69 Aligned_cols=90 Identities=18% Similarity=0.286 Sum_probs=69.5
Q ss_pred eeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCccccccEEee
Q psy17173 446 REDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNAFEIA 525 (1108)
Q Consensus 446 ~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~~aF~I~ 525 (1108)
++|-|.+.++..+.++.||++|.++.|.+.+..... .....+.++|..+.+... +. ..+.|.|.
T Consensus 1 ~~G~L~k~~~~~~~W~~r~~vl~~~~L~~~~~~~~~-------------~~~~~~~i~l~~~~~~~~-~~--~~~~F~i~ 64 (91)
T cd01246 1 VEGWLLKWTNYLKGWQKRWFVLDNGLLSYYKNKSSM-------------RGKPRGTILLSGAVISED-DS--DDKCFTID 64 (91)
T ss_pred CeEEEEEecccCCCceeeEEEEECCEEEEEecCccC-------------CCCceEEEEeceEEEEEC-CC--CCcEEEEE
Confidence 478888887766777899999999999998876542 123455677777665432 22 26899999
Q ss_pred cCCCCeEEEEeCCHHHHHHHHHHHHH
Q psy17173 526 PRDQPSIIIVTKSPEDKKSWFSDLIM 551 (1108)
Q Consensus 526 ~~~~~~~~l~a~s~eeK~~Wm~~L~~ 551 (1108)
..++..+.|.|.|.+++..||.+|..
T Consensus 65 ~~~~~~~~~~a~s~~e~~~Wi~al~~ 90 (91)
T cd01246 65 TGGDKTLHLRANSEEERQRWVDALEL 90 (91)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHh
Confidence 87778999999999999999999964
No 64
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=98.11 E-value=3e-05 Score=73.26 Aligned_cols=93 Identities=15% Similarity=0.175 Sum_probs=73.8
Q ss_pred eeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCcc---ccc
Q psy17173 444 FYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDD---IKN 520 (1108)
Q Consensus 444 li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~---~~~ 520 (1108)
.+++|-|.+.++..+.++.|++.|-+..|.+.|..+.. .-.+.|+|.++.|...++... -.|
T Consensus 2 v~k~G~L~Kkg~~~k~WkkRwfvL~~~~L~yyk~~~~~---------------~~~~~I~L~~~~v~~~~~~~~~~~~~~ 66 (100)
T cd01233 2 VSKKGYLNFPEETNSGWTRRFVVVRRPYLHIYRSDKDP---------------VERGVINLSTARVEHSEDQAAMVKGPN 66 (100)
T ss_pred cceeEEEEeeCCCCCCcEEEEEEEECCEEEEEccCCCc---------------cEeeEEEecccEEEEccchhhhcCCCc
Confidence 46889999988877778899999999999999886542 234667888887765555422 368
Q ss_pred cEEeecCCCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17173 521 AFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMV 552 (1108)
Q Consensus 521 aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l 552 (1108)
.|.|... +.+|.|+|.|++|+++||++|...
T Consensus 67 ~F~I~t~-~rt~~~~A~s~~e~~~Wi~ai~~~ 97 (100)
T cd01233 67 TFAVCTK-HRGYLFQALSDKEMIDWLYALNPL 97 (100)
T ss_pred EEEEECC-CCEEEEEcCCHHHHHHHHHHhhhh
Confidence 9999776 568999999999999999999654
No 65
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=97.98 E-value=6.7e-05 Score=70.23 Aligned_cols=90 Identities=19% Similarity=0.264 Sum_probs=69.7
Q ss_pred eeeeeEEEeCCCC----cceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCcccccc
Q psy17173 446 REDTLMKYDGKSN----RLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNA 521 (1108)
Q Consensus 446 ~eG~L~k~~~~~~----~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~~a 521 (1108)
++|-|.+.++.+. .++.|++.|-++.|.+.+..... ..++.|+|.+..|....+.. -.+.
T Consensus 2 ~~GwL~kk~~~~g~~~k~WkkrwfvL~~~~L~yyk~~~~~---------------~~~~~I~L~~~~v~~~~~~~-k~~~ 65 (96)
T cd01260 2 CDGWLWKRKKPGGFMGQKWARRWFVLKGTTLYWYRSKQDE---------------KAEGLIFLSGFTIESAKEVK-KKYA 65 (96)
T ss_pred ceeEEEEecCCCCccccCceeEEEEEECCEEEEECCCCCC---------------ccceEEEccCCEEEEchhcC-CceE
Confidence 4788887765433 56899999999999998876532 23467888888776554433 5789
Q ss_pred EEeecCCCCeEEEEeCCHHHHHHHHHHHHH
Q psy17173 522 FEIAPRDQPSIIIVTKSPEDKKSWFSDLIM 551 (1108)
Q Consensus 522 F~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~ 551 (1108)
|.|...+...|.|.|.|+++.++||.+|.+
T Consensus 66 F~I~~~~~~~~~f~a~s~~e~~~Wi~ai~~ 95 (96)
T cd01260 66 FKVCHPVYKSFYFAAETLDDLSQWVNHLIT 95 (96)
T ss_pred EEECCCCCcEEEEEeCCHHHHHHHHHHHHh
Confidence 999977657999999999999999999965
No 66
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=97.92 E-value=8.6e-05 Score=68.84 Aligned_cols=89 Identities=21% Similarity=0.346 Sum_probs=69.3
Q ss_pred eeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCccccccEEeec
Q psy17173 447 EDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNAFEIAP 526 (1108)
Q Consensus 447 eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~~aF~I~~ 526 (1108)
+|-|.|.+.--+.++.|+|.|=++.|.+.+...... ...++.|+|+.+.|...+ . .++.|+|..
T Consensus 2 ~G~L~K~~~~~k~Wk~RwFvL~~g~L~Yyk~~~~~~-------------~~~~G~I~L~~~~i~~~~-~--~~~~F~i~~ 65 (91)
T cd01247 2 NGVLSKWTNYINGWQDRYFVLKEGNLSYYKSEAEKS-------------HGCRGSIFLKKAIIAAHE-F--DENRFDISV 65 (91)
T ss_pred ceEEEEeccccCCCceEEEEEECCEEEEEecCccCc-------------CCCcEEEECcccEEEcCC-C--CCCEEEEEe
Confidence 577888877666678999999888999988755421 235688999988776432 2 258999987
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHH
Q psy17173 527 RDQPSIIIVTKSPEDKKSWFSDLIM 551 (1108)
Q Consensus 527 ~~~~~~~l~a~s~eeK~~Wm~~L~~ 551 (1108)
.++..|.|.|.|+++++.|+++|..
T Consensus 66 ~~~r~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 66 NENVVWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred CCCeEEEEEeCCHHHHHHHHHHHhh
Confidence 6668999999999999999999853
No 67
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=97.86 E-value=0.00012 Score=66.96 Aligned_cols=91 Identities=24% Similarity=0.420 Sum_probs=69.9
Q ss_pred eeeeEEEeCCC----CcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCccccccE
Q psy17173 447 EDTLMKYDGKS----NRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNAF 522 (1108)
Q Consensus 447 eG~L~k~~~~~----~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~~aF 522 (1108)
+|.+.....+. ..++.||++|+++.|.+++....... .. +.+++..+.|....++.+..+.|
T Consensus 2 ~g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~~~~~~~~~~~-----------~~---~~~~l~~~~v~~~~~~~~~~~~F 67 (99)
T cd00900 2 EGYLLKLGSDDVSKGKRWKRRWFFLFDDGLLLYKSDDKKEI-----------KP---GSIPLSEISVEEDPDGSDDPNCF 67 (99)
T ss_pred ccEEEEeCCCccccccCceeeEEEEECCEEEEEEcCCCCcC-----------CC---CEEEccceEEEECCCCCCCCceE
Confidence 45555554442 44579999999999999998865331 11 46778888877776665678999
Q ss_pred EeecCC--CCeEEEEeCCHHHHHHHHHHHHH
Q psy17173 523 EIAPRD--QPSIIIVTKSPEDKKSWFSDLIM 551 (1108)
Q Consensus 523 ~I~~~~--~~~~~l~a~s~eeK~~Wm~~L~~ 551 (1108)
.|...+ ...+.|.|.|.++++.|+.+|.+
T Consensus 68 ~i~~~~~~~~~~~~~~~~~~~~~~W~~al~~ 98 (99)
T cd00900 68 AIVTKDRGRRVFVFQADSEEEAQEWVEALQQ 98 (99)
T ss_pred EEECCCCCcEEEEEEcCCHHHHHHHHHHHhc
Confidence 999875 67999999999999999999864
No 68
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.84 E-value=0.00021 Score=70.40 Aligned_cols=94 Identities=18% Similarity=0.258 Sum_probs=72.3
Q ss_pred eeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCccccccEEee
Q psy17173 446 REDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNAFEIA 525 (1108)
Q Consensus 446 ~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~~aF~I~ 525 (1108)
++|-|.+.++..+.++.|++.|-++.|.+.+..... ..++.|+|.++.|...++. .-++.|+|.
T Consensus 2 k~G~L~K~~~~~~~WkkRwfvL~~~~L~yyk~~~~~---------------~~~g~I~L~~~~v~~~~~~-~~~~~F~i~ 65 (125)
T cd01252 2 REGWLLKQGGRVKTWKRRWFILTDNCLYYFEYTTDK---------------EPRGIIPLENVSIREVEDP-SKPFCFELF 65 (125)
T ss_pred cEEEEEEeCCCCCCeEeEEEEEECCEEEEEcCCCCC---------------CceEEEECCCcEEEEcccC-CCCeeEEEE
Confidence 578888887776777899999999998888754321 3467888998888766553 356789887
Q ss_pred cCCC--------------------CeEEEEeCCHHHHHHHHHHHHHHHhh
Q psy17173 526 PRDQ--------------------PSIIIVTKSPEDKKSWFSDLIMVNTK 555 (1108)
Q Consensus 526 ~~~~--------------------~~~~l~a~s~eeK~~Wm~~L~~l~~~ 555 (1108)
..++ ..|.|+|.|+++..+||++|..+...
T Consensus 66 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~ 115 (125)
T cd01252 66 SPSDKQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISP 115 (125)
T ss_pred CCccccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 5443 46889999999999999999876443
No 69
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=97.78 E-value=0.00015 Score=69.20 Aligned_cols=93 Identities=16% Similarity=0.205 Sum_probs=67.3
Q ss_pred eeeeeeEEEeCCCC-----cceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCc---
Q psy17173 445 YREDTLMKYDGKSN-----RLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTD--- 516 (1108)
Q Consensus 445 i~eG~L~k~~~~~~-----~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~--- 516 (1108)
|++|-|.+-+.+.+ .++.|+|.|=++.|.+.+..... .-.-++.|+|.++.+.+..+.+
T Consensus 1 ~k~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~-------------~~~~kG~I~L~~~~~ve~~~~~~~~ 67 (106)
T cd01238 1 ILESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFEK-------------RGSKKGSIDLSKIKCVETVKPEKNP 67 (106)
T ss_pred CcceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCccc-------------ccCcceeEECCcceEEEEecCCcCc
Confidence 57888887765443 45789999988888888865431 1234678888887665533221
Q ss_pred ----cccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHH
Q psy17173 517 ----DIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIM 551 (1108)
Q Consensus 517 ----~~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~ 551 (1108)
...+.|+|... +..+.+.|.|++|+++||++|.+
T Consensus 68 ~~~~~~~~~F~i~t~-~r~~yl~A~s~~er~~WI~ai~~ 105 (106)
T cd01238 68 PIPERFKYPFQVVHD-EGTLYVFAPTEELRKRWIKALKQ 105 (106)
T ss_pred ccccccCccEEEEeC-CCeEEEEcCCHHHHHHHHHHHHh
Confidence 23689999986 44777889999999999999975
No 70
>smart00427 H2B Histone H2B.
Probab=97.73 E-value=7.2e-05 Score=67.54 Aligned_cols=75 Identities=16% Similarity=0.341 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhcCCCCcCchHHHHHHHHHHHHHHHhccC---------CCCCChhhHHHHHHhhCCCCCchhhHHHHHHH
Q psy17173 33 VSSLHSILKQVHNSLDINTDALYYTEKLILKLLNLLCSK---------PLPLTTSDMEGKIKKYFPNPISEWTFNEAKQA 103 (1108)
Q Consensus 33 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 103 (1108)
-.-|+|||+||||+.+|...|...+++++-.++++++.. -.-.|.+|+...|..++|..|.++|++|+..|
T Consensus 4 ~~Yi~kvLKqVhpd~giS~kam~imnSfvnDiferIa~EAs~L~~~nkr~TltsreIqtAvrl~LpgeLakhAvsEgtkA 83 (89)
T smart00427 4 AIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASKLARYNKKSTLSSREIQTAVRLILPGELAKHAVSEGTKA 83 (89)
T ss_pred HHHHHHHHHHhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 346899999999999999999999999999999888753 23456778999999999999999999999999
Q ss_pred HHcC
Q psy17173 104 LEKG 107 (1108)
Q Consensus 104 ~~~~ 107 (1108)
+.+-
T Consensus 84 v~k~ 87 (89)
T smart00427 84 VTKY 87 (89)
T ss_pred HHhh
Confidence 8763
No 71
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.64 E-value=0.00041 Score=64.18 Aligned_cols=92 Identities=17% Similarity=0.243 Sum_probs=67.8
Q ss_pred eeeeeEEEeCC-CCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCccccccEEe
Q psy17173 446 REDTLMKYDGK-SNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNAFEI 524 (1108)
Q Consensus 446 ~eG~L~k~~~~-~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~~aF~I 524 (1108)
++|-|.+-+++ .+.++.||+.|-++.|.+.+..... .....+.+.+..+.|....+..+-.+.|.|
T Consensus 1 k~G~L~kk~~~~~~~W~kr~~~L~~~~l~~y~~~~~~-------------~~~~~~~i~l~~~~v~~~~~~~~~~~~f~i 67 (94)
T cd01250 1 KQGYLYKRSSKSNKEWKKRWFVLKNGQLTYHHRLKDY-------------DNAHVKEIDLRRCTVRHNGKQPDRRFCFEV 67 (94)
T ss_pred CcceEEEECCCcCCCceEEEEEEeCCeEEEEcCCccc-------------ccccceEEeccceEEecCccccCCceEEEE
Confidence 46888876654 4567899999998888887654431 112234577777777666555446789999
Q ss_pred ecCCCCeEEEEeCCHHHHHHHHHHHHH
Q psy17173 525 APRDQPSIIIVTKSPEDKKSWFSDLIM 551 (1108)
Q Consensus 525 ~~~~~~~~~l~a~s~eeK~~Wm~~L~~ 551 (1108)
...+ ..|.|+|.|.++.++|+.+|..
T Consensus 68 ~~~~-~~~~f~a~s~~~~~~Wi~al~~ 93 (94)
T cd01250 68 ISPT-KTWHFQADSEEERDDWISAIQE 93 (94)
T ss_pred EcCC-cEEEEECCCHHHHHHHHHHHhc
Confidence 9775 7899999999999999999853
No 72
>cd01229 PH_etc2 Epithelial cell transforming 2 (ECT2) pleckstrin homology (PH) domain. Epithelial cell transforming 2 (ECT2) pleckstrin homology (PH) domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.49 E-value=0.00041 Score=65.06 Aligned_cols=92 Identities=17% Similarity=0.274 Sum_probs=67.7
Q ss_pred eEEEEeecCeEEEEecCCCCccccc--cccccCcceeEEEEEeeccCeE-EeecCCCccccccEEeecCC-----CCeEE
Q psy17173 462 ERKVYFFDGVLILCKSNKKISVTVP--INVVSSQYEFKCKEMYFLRKVE-INDYENTDDIKNAFEIAPRD-----QPSII 533 (1108)
Q Consensus 462 er~~FLF~d~Ll~~k~~~~~~~~~~--~~~~~~~~~y~~k~~i~l~~~~-I~d~~d~~~~~~aF~I~~~~-----~~~~~ 533 (1108)
...+|||+|.|=+||++++.-.+.+ ...+.....|+-..-++|+.++ |.|+.|++++.++|-+..+. +.-|+
T Consensus 27 ~~tlFLfsD~lEi~kkR~kv~~~~KSP~~~~~~~~~~KHi~lmpLs~IkrVvdI~DtE~c~~aF~L~~R~p~d~~~~L~s 106 (129)
T cd01229 27 QVTLFLFNDCLEIARKRHKVIGTFKSPHGSTRPPASLKHIHLMPLSQIKKVLDIRDTEDCHNAFALLVRPPTEQANVLLS 106 (129)
T ss_pred eEEEEEecchHHHhhhcccccCCcCCCCCCCCCCcccceEEEeEhHHeEEEEeeeccccccceeEEEEeCCccchheEEE
Confidence 6899999999999999876554433 2223345678888889999886 78999999999999999543 22355
Q ss_pred EEe-CCHHHHHHHHHHHHHHH
Q psy17173 534 IVT-KSPEDKKSWFSDLIMVN 553 (1108)
Q Consensus 534 l~a-~s~eeK~~Wm~~L~~l~ 553 (1108)
|.- .-+-.|..|+..|.+..
T Consensus 107 F~l~~Ee~~K~~~Lk~Lcr~~ 127 (129)
T cd01229 107 FQMTSEELPKEVWLKMLCRHV 127 (129)
T ss_pred EEecCCcchHHHHHHHHHHHh
Confidence 544 33445999999887653
No 73
>PTZ00463 histone H2B; Provisional
Probab=97.44 E-value=0.00024 Score=66.81 Aligned_cols=79 Identities=15% Similarity=0.306 Sum_probs=68.1
Q ss_pred hhhHHHHHHHHHHhcCCCCcCchHHHHHHHHHHHHHHHhccC---------CCCCChhhHHHHHHhhCCCCCchhhHHHH
Q psy17173 30 GTLVSSLHSILKQVHNSLDINTDALYYTEKLILKLLNLLCSK---------PLPLTTSDMEGKIKKYFPNPISEWTFNEA 100 (1108)
Q Consensus 30 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 100 (1108)
.-|-.-|+|||+||||+.+|...|...+++++-.++++++.. -.-.|..|+...|..+.|..|.++|++|.
T Consensus 28 esy~~YI~KVLKqVhPd~gIS~kaM~ImnSfvnDifErIA~EAs~La~~nkr~TltsrEIQtAvrLlLpGELaKhAvsEG 107 (117)
T PTZ00463 28 DSYGLYIFKVLKQVHPDTGISRKSMNIMNSFLVDTFEKIATEASRLCKYTRRDTLSSREIQTAIRLVLPGELAKHAVSEG 107 (117)
T ss_pred chHHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHhhcccHHHHHhhhhHH
Confidence 346667999999999999999999999999999999888752 33456778999999999999999999999
Q ss_pred HHHHHcCC
Q psy17173 101 KQALEKGK 108 (1108)
Q Consensus 101 ~~~~~~~~ 108 (1108)
..|+.+-.
T Consensus 108 tkAv~k~~ 115 (117)
T PTZ00463 108 TKAVTKFT 115 (117)
T ss_pred HHHHHHhh
Confidence 99987643
No 74
>PLN00158 histone H2B; Provisional
Probab=97.44 E-value=0.00027 Score=66.54 Aligned_cols=78 Identities=18% Similarity=0.345 Sum_probs=68.5
Q ss_pred hhhhHHHHHHHHHHhcCCCCcCchHHHHHHHHHHHHHHHhccC---------CCCCChhhHHHHHHhhCCCCCchhhHHH
Q psy17173 29 KGTLVSSLHSILKQVHNSLDINTDALYYTEKLILKLLNLLCSK---------PLPLTTSDMEGKIKKYFPNPISEWTFNE 99 (1108)
Q Consensus 29 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 99 (1108)
+.-|-.-|+|||+||||+.+|...|...+++.+-.++++|+.. -.-.|..|+...|..++|..|.++|++|
T Consensus 26 ~esy~~YI~kVLKQVhPd~gIS~kaM~ImnSfvnDiferIA~EAs~La~~nkr~TltsrEIqtAvrLvLpgELaKhAvsE 105 (116)
T PLN00158 26 TETYKIYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKIATEAGKLARYNKKPTVTSREIQTAVRLILPGELAKHAVSE 105 (116)
T ss_pred cccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHhccHHHHHHHHHH
Confidence 4577788999999999999999999999999999998888752 2345778899999999999999999999
Q ss_pred HHHHHHc
Q psy17173 100 AKQALEK 106 (1108)
Q Consensus 100 ~~~~~~~ 106 (1108)
...|+.+
T Consensus 106 GtkAv~k 112 (116)
T PLN00158 106 GTKAVTK 112 (116)
T ss_pred HHHHHHH
Confidence 9999876
No 75
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.42 E-value=0.0011 Score=62.75 Aligned_cols=91 Identities=20% Similarity=0.186 Sum_probs=59.9
Q ss_pred eeeeeeEEEeCCCCcceeEEEEee-cCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeE-----EeecCCCccc
Q psy17173 445 YREDTLMKYDGKSNRLTERKVYFF-DGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVE-----INDYENTDDI 518 (1108)
Q Consensus 445 i~eG~L~k~~~~~~~~~er~~FLF-~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~-----I~d~~d~~~~ 518 (1108)
+++|-|.|.++.-+.++.||+.|- +..|++.+...... . .+.+++..+. +...++ .-
T Consensus 2 ~k~G~L~K~g~~~~~Wk~R~f~L~~~~~l~~yk~~~~~~-------------~--~~~i~l~~~~v~~~~~~~~~~--~~ 64 (102)
T cd01241 2 VKEGWLHKRGEYIKTWRPRYFLLKSDGSFIGYKEKPEDG-------------D--PFLPPLNNFSVAECQLMKTER--PR 64 (102)
T ss_pred cEEEEEEeecCCCCCCeeEEEEEeCCCeEEEEecCCCcc-------------C--ccccccCCeEEeeeeeeeccC--CC
Confidence 689999998887777789999999 56677666544211 0 1223344443 322222 23
Q ss_pred cccEEeecCC-CC--eEEEEeCCHHHHHHHHHHHHHH
Q psy17173 519 KNAFEIAPRD-QP--SIIIVTKSPEDKKSWFSDLIMV 552 (1108)
Q Consensus 519 ~~aF~I~~~~-~~--~~~l~a~s~eeK~~Wm~~L~~l 552 (1108)
.|.|.|...+ .. .-+|+|.|++|+++||++|..+
T Consensus 65 ~~~F~i~~~~~~~~~~r~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 65 PNTFIIRCLQWTTVIERTFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred cceEEEEeccCCcccCEEEEeCCHHHHHHHHHHHHhh
Confidence 5799998332 21 2378899999999999999653
No 76
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=97.38 E-value=0.0017 Score=61.16 Aligned_cols=90 Identities=12% Similarity=0.095 Sum_probs=61.9
Q ss_pred eeeeEEEeCCCCcceeEEEEeecC--eEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeec-CCC------cc
Q psy17173 447 EDTLMKYDGKSNRLTERKVYFFDG--VLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDY-ENT------DD 517 (1108)
Q Consensus 447 eG~L~k~~~~~~~~~er~~FLF~d--~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~-~d~------~~ 517 (1108)
+|-|.|.++..+.++.|++.|-++ .|.+.+..+. -..++.|+|+.+..... .+. ..
T Consensus 2 ~G~L~K~g~~~k~WkkRwFvL~~~~~~L~Yy~~~~~---------------~~~~g~I~L~~~~~v~~~~~~~~~~~~~~ 66 (101)
T cd01235 2 EGYLYKRGALLKGWKPRWFVLDPDKHQLRYYDDFED---------------TAEKGCIDLAEVKSVNLAQPGMGAPKHTS 66 (101)
T ss_pred eEEEEEcCCCCCCccceEEEEECCCCEEEEecCCCC---------------CccceEEEcceeEEEeecCCCCCCCCCCC
Confidence 678888777767778999999843 6777764432 22356777776554332 111 11
Q ss_pred ccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17173 518 IKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMV 552 (1108)
Q Consensus 518 ~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l 552 (1108)
-.+.|.|... +..|.|+|.|++++..|+++|.++
T Consensus 67 ~~~~f~i~t~-~r~~~~~a~s~~e~~~Wi~ai~~~ 100 (101)
T cd01235 67 RKGFFDLKTS-KRTYNFLAENINEAQRWKEKIQQC 100 (101)
T ss_pred CceEEEEEeC-CceEEEECCCHHHHHHHHHHHHhh
Confidence 2456777654 568999999999999999999764
No 77
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.38 E-value=0.001 Score=62.50 Aligned_cols=90 Identities=20% Similarity=0.222 Sum_probs=61.6
Q ss_pred eeeeEEEeC---CCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCC-Cc---ccc
Q psy17173 447 EDTLMKYDG---KSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYEN-TD---DIK 519 (1108)
Q Consensus 447 eG~L~k~~~---~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d-~~---~~~ 519 (1108)
+|.|.+-++ .-+.++-|++.|=+..|.+.|....... ..+.|+|+++..+...+ .. +..
T Consensus 3 ~G~l~k~~g~~r~~K~WkrRwF~L~~~~L~y~K~~~~~~~--------------~~g~IdL~~~~sVk~~~~~~~~~~~~ 68 (101)
T cd01264 3 EGQLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDP--------------DDCSIDLSKIRSVKAVAKKRRDRSLP 68 (101)
T ss_pred ceEEeecCccceeeecceeEEEEEeCCEEEEEeccCccCC--------------CCceEEcccceEEeeccccccccccC
Confidence 566766555 2334568888888888877765433111 13466777666544332 21 336
Q ss_pred ccEEeecCCCCeEEEEeCCHHHHHHHHHHHHH
Q psy17173 520 NAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIM 551 (1108)
Q Consensus 520 ~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~ 551 (1108)
|+|+|... ..+|.|+|.|++++++|+++|..
T Consensus 69 ~~Fei~tp-~rt~~l~A~se~e~e~WI~~i~~ 99 (101)
T cd01264 69 KAFEIFTA-DKTYILKAKDEKNAEEWLQCLNI 99 (101)
T ss_pred cEEEEEcC-CceEEEEeCCHHHHHHHHHHHHh
Confidence 89999876 47999999999999999999865
No 78
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=97.37 E-value=0.0012 Score=63.35 Aligned_cols=78 Identities=17% Similarity=0.185 Sum_probs=54.5
Q ss_pred cceeEEEEeecCeE-------EEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCC-----CccccccEEeec
Q psy17173 459 RLTERKVYFFDGVL-------ILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYEN-----TDDIKNAFEIAP 526 (1108)
Q Consensus 459 ~~~er~~FLF~d~L-------l~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d-----~~~~~~aF~I~~ 526 (1108)
.++.|++.|-++-+ .+.+..+ .-+.++.|+|+.+.+.+... .....+.|.|..
T Consensus 18 ~WkrRwFvL~~~~l~~~~~~L~Yyk~~~---------------~~k~~g~I~L~~~~~v~~~~~~~~~~~~~~~~f~i~t 82 (108)
T cd01266 18 KWVRRYFVLHCGDRERNLFALEYYKTSR---------------KFKLEFVIDLESCSQVDPGLLCTAGNCIFGYGFDIET 82 (108)
T ss_pred CcEEEEEEEeccccCCCcceEEEECCCC---------------CCccceEEECCccEEEcccccccccCcccceEEEEEe
Confidence 56789999987654 5554332 23456788888876654421 112345688885
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17173 527 RDQPSIIIVTKSPEDKKSWFSDLIMV 552 (1108)
Q Consensus 527 ~~~~~~~l~a~s~eeK~~Wm~~L~~l 552 (1108)
. +.+|.|.|.|+++++.||.+|.++
T Consensus 83 ~-~r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 83 I-VRDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred C-CccEEEEECCHHHHHHHHHHHHhh
Confidence 4 568999999999999999999764
No 79
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=97.34 E-value=0.0015 Score=62.04 Aligned_cols=93 Identities=15% Similarity=0.219 Sum_probs=62.3
Q ss_pred eeeeeEEEeCCC-CcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccC----eEEee-cCCC-cc-
Q psy17173 446 REDTLMKYDGKS-NRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRK----VEIND-YENT-DD- 517 (1108)
Q Consensus 446 ~eG~L~k~~~~~-~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~----~~I~d-~~d~-~~- 517 (1108)
++|-|.|.+++. +.++.|++.|=++.|.+.+...... -++.|+|.. +.|.. .+++ ..
T Consensus 1 KeG~L~K~g~~~~k~wkkRwFvL~~~~L~Yyk~~~d~~---------------~~G~I~L~~~~~~~~v~~~~~~~~~~~ 65 (103)
T cd01251 1 KEGFMEKTGPKHTEGFKKRWFTLDDRRLMYFKDPLDAF---------------AKGEVFLGSQEDGYEVREGLPPGTQGN 65 (103)
T ss_pred CceeEEecCCCCCCCceeEEEEEeCCEEEEECCCCCcC---------------cCcEEEeeccccceeEeccCCcccccc
Confidence 467888877653 5567899888888888887644311 223445543 22322 1221 11
Q ss_pred ccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHHh
Q psy17173 518 IKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVNT 554 (1108)
Q Consensus 518 ~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~~ 554 (1108)
..++|.|... +.+|.|.|.|++|+.+||++|..+..
T Consensus 66 ~~~~F~i~t~-~Rty~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 66 HWYGVTLVTP-ERKFLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred ccceEEEEeC-CeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 2349999876 67999999999999999999987643
No 80
>KOG0931|consensus
Probab=97.26 E-value=0.001 Score=75.38 Aligned_cols=125 Identities=12% Similarity=0.209 Sum_probs=95.5
Q ss_pred HHHHHHHHhhccCCCcccccccccceeeeeeeEEEeCCCC----cceeEEEEeecCeEEEEecCCCCccccccccccCcc
Q psy17173 419 LEKIHELKKNVDGVDVRDLRPYLEEFYREDTLMKYDGKSN----RLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQY 494 (1108)
Q Consensus 419 ~~kl~eiq~~I~g~~~~~l~~~~r~li~eG~L~k~~~~~~----~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~ 494 (1108)
+...+.+.+.|.|.+..-+.-++|+|+---.|..+..-.| ..++|-+|||||+||++|.-.+++ ...
T Consensus 392 VsqVqkVer~IVGkk~~vLs~phRRLVC~crL~eV~Dpnk~Qk~~ahqReVFLFNDllVV~K~~~kkk---------~s~ 462 (627)
T KOG0931|consen 392 VSQVQKVERAIVGKKPPVLSLPHRRLVCYCRLFEVPDPNKPQKLGAHQREVFLFNDLLVVTKIFQKKK---------TSV 462 (627)
T ss_pred HHHHHHHHHHHhcCCCcccccCCceEEEEEeeeecCCCCchhhcccccceeeeecchhhhhhhhccCc---------cee
Confidence 3456666777888877677778899999999988876433 235999999999999999754433 224
Q ss_pred eeEEEEEeeccCeEEeecCCCccccccEEeecCC----CC-eEEEEeCCHHHHHHHHHHHHHHH
Q psy17173 495 EFKCKEMYFLRKVEINDYENTDDIKNAFEIAPRD----QP-SIIIVTKSPEDKKSWFSDLIMVN 553 (1108)
Q Consensus 495 ~y~~k~~i~l~~~~I~d~~d~~~~~~aF~I~~~~----~~-~~~l~a~s~eeK~~Wm~~L~~l~ 553 (1108)
.|.|+..+.|-++.+..-+.+ -+.+++.|.... .+ -+.|.|.+.+++..+++++..-.
T Consensus 463 TYtf~qs~~Llgmhv~lFqn~-yY~fGitltsp~~g~e~k~~ihFnA~n~~dr~kFv~Dl~ESI 525 (627)
T KOG0931|consen 463 TYTFRQSFLLLGMHVQLFQNG-YYEFGITLTSPVPGSEKKVLIHFNAPNFQDRCKFVADLRESI 525 (627)
T ss_pred EeehhhhhhHHHHHHHHHhhc-cccCceEEeccCCCCceeEEEEecCCCHHHHHHHHHHHHHHH
Confidence 899999999999888766655 466777777332 12 68999999999999999998753
No 81
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=97.21 E-value=0.0038 Score=58.97 Aligned_cols=92 Identities=14% Similarity=0.173 Sum_probs=61.7
Q ss_pred eeeeeeeEEEeCCCCcceeEEEEeecC------eEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeec-CCCc
Q psy17173 444 FYREDTLMKYDGKSNRLTERKVYFFDG------VLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDY-ENTD 516 (1108)
Q Consensus 444 li~eG~L~k~~~~~~~~~er~~FLF~d------~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~-~d~~ 516 (1108)
.+++|-|.|.+. ++-|++.|=.+ .|-+.+..+.-.. ..-.-++.|+|+++..... +|.
T Consensus 2 v~k~GyL~K~K~----~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~----------~~~~p~~vI~L~~c~~v~~~~d~- 66 (101)
T cd01257 2 VRKSGYLRKQKS----MHKRFFVLRAESSGGPARLEYYENEKKFLQ----------KGSAPKRVIPLESCFNINKRADA- 66 (101)
T ss_pred ccEEEEEeEecC----cEeEEEEEecCCCCCCceEEEECChhhccc----------cCCCceEEEEccceEEEeecccc-
Confidence 467898888622 24688888766 5666665432100 0012345678887765433 333
Q ss_pred cccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHH
Q psy17173 517 DIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIM 551 (1108)
Q Consensus 517 ~~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~ 551 (1108)
.-+|+|.|...+ .+|.|.|.|++|+++|+++|..
T Consensus 67 k~~~~f~i~t~d-r~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 67 KHRHLIALYTRD-EYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred ccCeEEEEEeCC-ceEEEEeCCHHHHHHHHHHHhh
Confidence 346899999875 5999999999999999999965
No 82
>COG5247 BUR6 Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog) [Transcription]
Probab=97.15 E-value=0.00067 Score=61.45 Aligned_cols=73 Identities=15% Similarity=0.149 Sum_probs=68.0
Q ss_pred ccchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhcChhhhhh
Q psy17173 114 VISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMYADKALLEL 186 (1108)
Q Consensus 114 ~fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~~D~eL~~l 186 (1108)
.||+.||.+.++-..--.+|+..+||...-.||...++|..++++.++....+|+|-++|.-|+.+|+-.+=|
T Consensus 23 rFP~ar~KkIMQ~deDiGKV~q~tPVIaskalE~Fl~~iv~~s~k~aR~~~skR~t~e~lk~a~~sdekFdFL 95 (113)
T COG5247 23 RFPIARLKKIMQLDEDIGKVGQSTPVIASKALEMFLTEIVGLSLKEARKKSSKRMTSEFLKRATESDEKFDFL 95 (113)
T ss_pred cCCHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHhhhHHHHHH
Confidence 5999999999987776789999999999999999999999999999999999999999999999999887533
No 83
>KOG1729|consensus
Probab=97.10 E-value=0.00024 Score=78.87 Aligned_cols=111 Identities=16% Similarity=0.265 Sum_probs=87.2
Q ss_pred cccccccccceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecC
Q psy17173 434 VRDLRPYLEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYE 513 (1108)
Q Consensus 434 ~~~l~~~~r~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~ 513 (1108)
+..+..++|.|+++|.+++...+. ++.|++|||+|++.++.....+. .|.-...+++.++.+....
T Consensus 36 ~~~~~~~grv~~~q~~~~k~~rk~--~q~r~~~l~~D~~~~~~~~~~~~------------~~~~~~~~~le~~~~~~~~ 101 (288)
T KOG1729|consen 36 GHPCRECGRVLCRQGTLVKRCRKK--LQSRSFFLFNDILVYGNIVSDNK------------LLNKNHIIPLEGVSQESRS 101 (288)
T ss_pred cCcccccchhhhhhhhhHHHHhcc--cccccccccccchhhcccccCHH------------HHhHHhcccccchhhhhhc
Confidence 466777889999999997666654 57999999999999999876642 3444456666777777777
Q ss_pred CCccccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHHhhHHHH
Q psy17173 514 NTDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVNTKSMLE 559 (1108)
Q Consensus 514 d~~~~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~~~s~l~ 559 (1108)
+...+.+.+.|.+. .+++.+.+.+..||..|+..|..++....-.
T Consensus 102 ~~~~~~~~~~~~S~-~ks~~~~~as~~ek~e~~~~i~~~~~~~l~~ 146 (288)
T KOG1729|consen 102 DNERVRNGWQILSA-LKSFTVLAASQTEKNEWQNHITECVEDLLSK 146 (288)
T ss_pred cccccccchhhhcc-cchhhhhcchhhhhHHHHHHHHHHHHHHHHH
Confidence 77778888888776 5688999999999999998888776665543
No 84
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.08 E-value=0.0045 Score=57.86 Aligned_cols=88 Identities=20% Similarity=0.141 Sum_probs=59.5
Q ss_pred eeeeEEEeCC--CCcceeEEEEeec--CeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCccccccE
Q psy17173 447 EDTLMKYDGK--SNRLTERKVYFFD--GVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNAF 522 (1108)
Q Consensus 447 eG~L~k~~~~--~~~~~er~~FLF~--d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~~aF 522 (1108)
.|-|.|.+++ .+.++.|+|.|=+ ..|.+.+.... -.-++.|+|.++.+...++. -++.|
T Consensus 2 ~GyL~K~g~~~~~K~WkkRWFvL~~~~~~L~Yyk~~~d---------------~~p~G~I~L~~~~~~~~~~~--~~~~F 64 (95)
T cd01265 2 CGYLHKIEGKGPLRGRRSRWFALDDRTCYLYYYKDSQD---------------AKPLGRVDLSGAAFTYDPRE--EKGRF 64 (95)
T ss_pred cccEEEecCCCCCcCceeEEEEEcCCCcEEEEECCCCc---------------ccccceEECCccEEEcCCCC--CCCEE
Confidence 3566666553 2445677777653 35666654432 23456778888766543332 36899
Q ss_pred EeecCCCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17173 523 EIAPRDQPSIIIVTKSPEDKKSWFSDLIMV 552 (1108)
Q Consensus 523 ~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l 552 (1108)
.|... +..|.|.|.|+++++.||++|...
T Consensus 65 ~i~t~-~r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 65 EIHSN-NEVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred EEEcC-CcEEEEECCCHHHHHHHHHHHHhh
Confidence 99875 568999999999999999999653
No 85
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.98 E-value=0.0067 Score=56.96 Aligned_cols=75 Identities=13% Similarity=0.164 Sum_probs=58.0
Q ss_pred ceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCcc--ccccEEeecCCCCeEEEEeC
Q psy17173 460 LTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDD--IKNAFEIAPRDQPSIIIVTK 537 (1108)
Q Consensus 460 ~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~--~~~aF~I~~~~~~~~~l~a~ 537 (1108)
++.|+|.|=+..|.+.+.... .-++.|+|..+..+...+... ..|.|+|...+ ..+.++|.
T Consensus 21 ~KkRwF~Lt~~~L~Y~k~~~~----------------~~~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~~-r~~yi~a~ 83 (98)
T cd01244 21 FKKRYFQLTTTHLSWAKDVQC----------------KKSALIKLAAIKGTEPLSDKSFVNVDIITIVCED-DTMQLQFE 83 (98)
T ss_pred CceeEEEECCCEEEEECCCCC----------------ceeeeEEccceEEEEEcCCcccCCCceEEEEeCC-CeEEEECC
Confidence 468999999999999884432 446788888888765443323 35899998864 58999999
Q ss_pred CHHHHHHHHHHHHH
Q psy17173 538 SPEDKKSWFSDLIM 551 (1108)
Q Consensus 538 s~eeK~~Wm~~L~~ 551 (1108)
|++|+++||++|..
T Consensus 84 s~~E~~~Wi~al~k 97 (98)
T cd01244 84 APVEATDWLNALEK 97 (98)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999999964
No 86
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.98 E-value=0.0035 Score=58.78 Aligned_cols=88 Identities=17% Similarity=0.143 Sum_probs=57.6
Q ss_pred eeeEEEeCC-CCcceeEEEEeec----CeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCC-cccccc
Q psy17173 448 DTLMKYDGK-SNRLTERKVYFFD----GVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENT-DDIKNA 521 (1108)
Q Consensus 448 G~L~k~~~~-~~~~~er~~FLF~----d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~-~~~~~a 521 (1108)
|-|.|-+++ .+.++.|++.|=+ ..|-+.+..+... -++.+++..+.|....|. -+-.|.
T Consensus 3 G~l~K~g~~~~K~wK~rwF~l~~~~s~~~l~yf~~~~~~~---------------p~gli~l~~~~V~~v~ds~~~r~~c 67 (98)
T cd01245 3 GNLLKRTKSVTKLWKTLYFALILDGSRSHESLLSSPKKTK---------------PIGLIDLSDAYLYPVHDSLFGRPNC 67 (98)
T ss_pred CccccCCCCcccccceeEEEEecCCCCceEEEEcCCCCCC---------------ccceeeccccEEEEccccccCCCeE
Confidence 334444343 4445677777754 5666665544322 134678888888877664 223699
Q ss_pred EEeecCCC-CeEEEEeCCHHHHHHHHHHHHH
Q psy17173 522 FEIAPRDQ-PSIIIVTKSPEDKKSWFSDLIM 551 (1108)
Q Consensus 522 F~I~~~~~-~~~~l~a~s~eeK~~Wm~~L~~ 551 (1108)
|+|..... ..|.++|.+ +|+++||++|..
T Consensus 68 Fel~~~~~~~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 68 FQIVERALPTVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred EEEecCCCCeEEEEeCCH-HHHHHHHHHHhc
Confidence 99997765 567777777 999999999864
No 87
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.92 E-value=0.0055 Score=58.19 Aligned_cols=80 Identities=14% Similarity=0.127 Sum_probs=57.1
Q ss_pred cceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEE--EeeccCeEEeecCCCccccccEEeecCCCCeEEEEe
Q psy17173 459 RLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKE--MYFLRKVEINDYENTDDIKNAFEIAPRDQPSIIIVT 536 (1108)
Q Consensus 459 ~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~--~i~l~~~~I~d~~d~~~~~~aF~I~~~~~~~~~l~a 536 (1108)
.++.|++.|-+..|.+.+..+.... . ... .+.+.+..|.-..+...-+|.|.|...++..|.|.|
T Consensus 22 ~Wk~r~~vL~~~~L~~ykd~~~~~~-----------~--~~~~~~i~l~~~~i~~~~~~~k~~~~F~l~~~~~~~~~f~a 88 (104)
T cd01253 22 SWDNVYGVLCGQSLSFYKDEKMAAE-----------N--VHGEPPVDLTGAQCEVASDYTKKKHVFRLRLPDGAEFLFQA 88 (104)
T ss_pred CcceEEEEEeCCEEEEEecCccccc-----------C--CCCCCcEeccCCEEEecCCcccCceEEEEEecCCCEEEEEC
Confidence 4579999999999999885432110 0 011 345555555444343445799999877788999999
Q ss_pred CCHHHHHHHHHHHHH
Q psy17173 537 KSPEDKKSWFSDLIM 551 (1108)
Q Consensus 537 ~s~eeK~~Wm~~L~~ 551 (1108)
.|.++...|+.+|..
T Consensus 89 ~s~e~~~~Wi~aL~~ 103 (104)
T cd01253 89 PDEEEMSSWVRALKS 103 (104)
T ss_pred CCHHHHHHHHHHHhc
Confidence 999999999999853
No 88
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.82 E-value=0.0095 Score=57.80 Aligned_cols=101 Identities=14% Similarity=0.080 Sum_probs=69.6
Q ss_pred ceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCccee-EEEEEeeccCeEEeecCCCcccccc
Q psy17173 443 EFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEF-KCKEMYFLRKVEINDYENTDDIKNA 521 (1108)
Q Consensus 443 ~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y-~~k~~i~l~~~~I~d~~d~~~~~~a 521 (1108)
+...++.=.+...+++.++.+|+.|-...|.+.|-.+.... ...+ .+...|.|....+.-..|-..-+|.
T Consensus 9 K~~~~~~~kk~~~~~R~Wk~~y~vL~g~~L~~yKDe~~~~~---------~~~~~~~~~~Isi~~a~~~ia~dy~Kr~~V 79 (117)
T cd01230 9 KVHADPDCRKTPFGKRSWKMFYGILRGLVLYLQKDEHKPGK---------SLSETELKNAISIHHALATRASDYSKKPHV 79 (117)
T ss_pred EEEecCCCccCCCCCCcceEEEEEEECCEEEEEccCccccc---------ccccccccceEEeccceeEeeccccCCCcE
Confidence 33333333333334566789999999999999886643111 1122 3445666766554334445556899
Q ss_pred EEeecCCCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17173 522 FEIAPRDQPSIIIVTKSPEDKKSWFSDLIMV 552 (1108)
Q Consensus 522 F~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l 552 (1108)
|.|...++..|.|+|.+.+|.+.|+.+|..+
T Consensus 80 F~L~~~~g~~~lfqA~~~ee~~~Wi~~I~~~ 110 (117)
T cd01230 80 FRLRTADWREFLFQTSSLKELQSWIERINVV 110 (117)
T ss_pred EEEEcCCCCEEEEECCCHHHHHHHHHHHHHH
Confidence 9999988899999999999999999999754
No 89
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.80 E-value=0.0098 Score=56.46 Aligned_cols=78 Identities=13% Similarity=0.086 Sum_probs=53.8
Q ss_pred ceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeec-CCCccccccEEeecCCCCeEEEEeCC
Q psy17173 460 LTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDY-ENTDDIKNAFEIAPRDQPSIIIVTKS 538 (1108)
Q Consensus 460 ~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~-~d~~~~~~aF~I~~~~~~~~~l~a~s 538 (1108)
++-|++.|-++-+|+....+.. ...-++.|.|+.+..+.. .+..+-.++|.|... +..|.|.|.|
T Consensus 24 WkrRWFvL~~~~~L~y~~d~~~-------------~~~p~G~IdL~~~~~V~~~~~~~~~~~~f~I~tp-~R~f~l~Aet 89 (104)
T cd01236 24 WQRRWFILYDHGLLTYALDEMP-------------TTLPQGTIDMNQCTDVVDAEARTGQKFSICILTP-DKEHFIKAET 89 (104)
T ss_pred ccceEEEEeCCCEEEEeeCCCC-------------CcccceEEEccceEEEeecccccCCccEEEEECC-CceEEEEeCC
Confidence 4678899987777777543321 112245677776665433 233334689999876 5689999999
Q ss_pred HHHHHHHHHHHHH
Q psy17173 539 PEDKKSWFSDLIM 551 (1108)
Q Consensus 539 ~eeK~~Wm~~L~~ 551 (1108)
++|++.||++|..
T Consensus 90 e~E~~~Wi~~l~~ 102 (104)
T cd01236 90 KEEISWWLNMLMV 102 (104)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999853
No 90
>KOG0930|consensus
Probab=96.79 E-value=0.0057 Score=65.57 Aligned_cols=102 Identities=20% Similarity=0.301 Sum_probs=76.8
Q ss_pred eeeeeeEEEeCCC-CcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCccccccEE
Q psy17173 445 YREDTLMKYDGKS-NRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNAFE 523 (1108)
Q Consensus 445 i~eG~L~k~~~~~-~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~~aF~ 523 (1108)
-+||-|.|.++++ +.|+-|.+.|-+++|-+......+-+ ++.|+|.++.|+..+|. .-.|.|+
T Consensus 261 dREGWLlKlgg~rvktWKrRWFiLtdNCLYYFe~tTDKEP---------------rGIIpLeNlsir~VedP-~kP~cfE 324 (395)
T KOG0930|consen 261 DREGWLLKLGGNRVKTWKRRWFILTDNCLYYFEYTTDKEP---------------RGIIPLENLSIREVEDP-KKPNCFE 324 (395)
T ss_pred cccceeeeecCCcccchhheeEEeecceeeeeeeccCCCC---------------CcceeccccceeeccCC-CCCCeEE
Confidence 4689999987743 45678999999999999887654332 45789999999988876 4567888
Q ss_pred eecCCC---------------------CeEEEEeCCHHHHHHHHHHHHHHHhhHHHHHhh
Q psy17173 524 IAPRDQ---------------------PSIIIVTKSPEDKKSWFSDLIMVNTKSMLERTL 562 (1108)
Q Consensus 524 I~~~~~---------------------~~~~l~a~s~eeK~~Wm~~L~~l~~~s~l~~~l 562 (1108)
|..... ..|.++|.|+|||.+||++|....++-.+-.++
T Consensus 325 ly~ps~~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is~~Pfy~ml 384 (395)
T KOG0930|consen 325 LYIPSNKGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAISRDPFYEML 384 (395)
T ss_pred EecCCCCcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhccCcHHHHH
Confidence 772211 258999999999999999998876655554443
No 91
>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.
Probab=96.71 E-value=0.017 Score=56.31 Aligned_cols=93 Identities=9% Similarity=0.168 Sum_probs=66.4
Q ss_pred eeEEEEeecCe-EEEEecCCCCccccccc----cccCcceeEEEEEeeccCeEEeecCCCcc-ccccEEeecC-------
Q psy17173 461 TERKVYFFDGV-LILCKSNKKISVTVPIN----VVSSQYEFKCKEMYFLRKVEINDYENTDD-IKNAFEIAPR------- 527 (1108)
Q Consensus 461 ~er~~FLF~d~-Ll~~k~~~~~~~~~~~~----~~~~~~~y~~k~~i~l~~~~I~d~~d~~~-~~~aF~I~~~------- 527 (1108)
-+..+|.|... +++||...+.+..+++. ......-|+|+..+|++.+.|+.....+. ....|+|.+.
T Consensus 49 ~e~~~FVFK~AVVlv~ke~~K~KkKl~~~~r~~~~~e~dp~rfr~miP~~alQVR~~n~ad~e~~~vwEliH~kSe~egR 128 (160)
T cd01255 49 LELMCFVFKSAVVLVYKERLKQKKKLMGVSRKNATNEVDPFRFRVLIPVTALQVRASSAADMESNFLWELIHLKSELEGR 128 (160)
T ss_pred ceEEEEEecceEEEEEcCcchhhhccccccccccccccCceeEEEeeceeeeeeecCCCcCcccceEEEEEeecccccCC
Confidence 48899999665 55677665444333222 22344579999999999999988764333 3457888732
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17173 528 DQPSIIIVTKSPEDKKSWFSDLIMVN 553 (1108)
Q Consensus 528 ~~~~~~l~a~s~eeK~~Wm~~L~~l~ 553 (1108)
.++.|.|+|+++|.|+..|+.+++..
T Consensus 129 pE~vfqLCcS~~E~k~~flK~Irsil 154 (160)
T cd01255 129 PEKVFVLCCSTAESRNAFLKTIRSIL 154 (160)
T ss_pred CcceEEEecCCHHHHHHHHHHHHHHH
Confidence 24579999999999999999987653
No 92
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=96.23 E-value=0.062 Score=51.86 Aligned_cols=103 Identities=20% Similarity=0.178 Sum_probs=52.8
Q ss_pred eeeeeEEEeCC-CCcceeEEEEee-cCeEEEEecCCCCccccccccccCcceeEEEEE----eeccCeEE-ee-cCCCcc
Q psy17173 446 REDTLMKYDGK-SNRLTERKVYFF-DGVLILCKSNKKISVTVPINVVSSQYEFKCKEM----YFLRKVEI-ND-YENTDD 517 (1108)
Q Consensus 446 ~eG~L~k~~~~-~~~~~er~~FLF-~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~----i~l~~~~I-~d-~~d~~~ 517 (1108)
++|.|.|.+.. .+.++.|++.|= |.+|.+.|....... ....+..+ .....++. ........ .+ ..-+..
T Consensus 1 k~G~l~K~~~~~~kgWk~RwFiL~k~~~L~YyK~~~~~~~-~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (112)
T PF15413_consen 1 KEGYLYKWGNKFGKGWKKRWFILRKDGVLSYYKIPRDKKD-VRIIGEES-SRVIRKGDWSISRRSSRIQGIKDKNPFGEI 78 (112)
T ss_dssp EEEEEEE--TTS-S--EEEEEEEE-TTEEEEESS--------------T-T-SB-SEEEE---GGGT-EEEES-T--SS-
T ss_pred CCceEEEecCCCCcCccccEEEEEeCCEEEEeeccccccc-ccccccch-hceEeecccCcccccccccccccCCcccCc
Confidence 57999999887 777889999999 999999998221110 00000000 01111111 11122221 11 111222
Q ss_pred ccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHH
Q psy17173 518 IKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIM 551 (1108)
Q Consensus 518 ~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~ 551 (1108)
....|.|.+. .++|.|.|.|.+|+..||++|..
T Consensus 79 ~~~~~~i~T~-~kt~~l~~~t~~d~~~Wi~aL~~ 111 (112)
T PF15413_consen 79 HLKVFSIFTP-TKTFHLRCETREDRYDWIEALQE 111 (112)
T ss_dssp SSEEEEEE-S-S-EEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCcEEECC-CcEEEEEECCHHHHHHHHHHHHh
Confidence 3456666544 56999999999999999999964
No 93
>KOG1659|consensus
Probab=95.51 E-value=0.019 Score=59.53 Aligned_cols=72 Identities=15% Similarity=0.166 Sum_probs=67.7
Q ss_pred cccchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhcChhhh
Q psy17173 113 LVISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMYADKALL 184 (1108)
Q Consensus 113 l~fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~~D~eL~ 184 (1108)
-.||++||.+.++...=-.||...+||-+--.||....++|..++..++....+++++.|++.++.+|+..+
T Consensus 12 trfp~aRiKKIMQ~dEdIGKvaqavPViisralElFl~~l~~~t~~~t~~~~aKt~s~~hlkq~v~~~~~Fd 83 (224)
T KOG1659|consen 12 TRFPPARIKKIMQSDEDIGKVAQAVPVIISRALELFLESLLQKTLEITRSRGAKTVSSSHLKQAVESDPKFD 83 (224)
T ss_pred ccCCHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCccccCHHHHHHHHhccchhH
Confidence 369999999999877777899999999999999999999999999999999999999999999999998875
No 94
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....
Probab=95.46 E-value=0.025 Score=48.88 Aligned_cols=64 Identities=17% Similarity=0.215 Sum_probs=55.1
Q ss_pred ccchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHH
Q psy17173 114 VISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAM 177 (1108)
Q Consensus 114 ~fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~ 177 (1108)
.||+++|.+.+|..--..+|+..+...++-..|....++..-|...+...+++.|+++||..|+
T Consensus 2 ~lP~a~vkri~k~~~~~~~vs~ea~~~i~~a~e~Fi~~l~~~A~~~a~~~~rkti~~~Dv~~Av 65 (65)
T PF00808_consen 2 SLPLARVKRIMKSDPDVMRVSKEAVEAIAKAAEEFIQYLAKEANEIAQRDKRKTITYEDVAKAV 65 (65)
T ss_dssp SS-HHHHHHHHHHTSTTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEE-HHHHHHHH
T ss_pred CCChHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHC
Confidence 5899999999977644578999999999999999999999999999999999999999998775
No 95
>KOG1744|consensus
Probab=95.38 E-value=0.014 Score=56.17 Aligned_cols=79 Identities=18% Similarity=0.363 Sum_probs=66.1
Q ss_pred chhhhHHHHHHHHHHhcCCCCcCchHHHHHHHHHHHHHHHhccC---------CCCCChhhHHHHHHhhCCCCCchhhHH
Q psy17173 28 WKGTLVSSLHSILKQVHNSLDINTDALYYTEKLILKLLNLLCSK---------PLPLTTSDMEGKIKKYFPNPISEWTFN 98 (1108)
Q Consensus 28 w~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~~~~~~~~~~~f~~~~~~~~~~ 98 (1108)
=.+-|...++||+.||||++.|...|...+++.+..+++++.+. .+--+..++...+..++|..+.++|+.
T Consensus 35 ~~e~~s~yv~kvlk~Vhpd~gis~~a~~vmnsf~ndife~iA~ea~rla~y~krstisSreiqta~rLllPgel~khA~s 114 (127)
T KOG1744|consen 35 RKESYSEYVYKVLKQVHPDLGISSKAMGVMNSFVNDIFERIASEAGRLAHYNKRSTISSREIQTAVRLLLPGELAKHAVS 114 (127)
T ss_pred ccCceeeehhhhhhcccCCCCcCHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCcccHHHHHHHHHHhCchHHhhhhhc
Confidence 34567778899999999999999999999999998888887752 222355668889999999999999999
Q ss_pred HHHHHHHc
Q psy17173 99 EAKQALEK 106 (1108)
Q Consensus 99 ~~~~~~~~ 106 (1108)
++..|+.+
T Consensus 115 eGtkav~k 122 (127)
T KOG1744|consen 115 EGTKAVTK 122 (127)
T ss_pred ccchhhee
Confidence 99888776
No 96
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.36 E-value=0.16 Score=46.71 Aligned_cols=76 Identities=16% Similarity=0.185 Sum_probs=60.1
Q ss_pred eeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCc-cccccEEeecCCC-------CeE
Q psy17173 461 TERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTD-DIKNAFEIAPRDQ-------PSI 532 (1108)
Q Consensus 461 ~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~-~~~~aF~I~~~~~-------~~~ 532 (1108)
++|.+.|-++.|-..|-...+.. |..+||.++.+++++++- +-++.|++...++ +.+
T Consensus 20 K~~WFVLt~~~L~wykd~eeKE~---------------kyilpLdnLk~Rdve~gf~sk~~~FeLfnpd~rnvykd~k~l 84 (110)
T cd01256 20 KDYWFVLTSESLSWYKDDEEKEK---------------KYMLPLDGLKLRDIEGGFMSRNHKFALFYPDGRNVYKDYKQL 84 (110)
T ss_pred cceEEEEecceeeeecccccccc---------------cceeeccccEEEeecccccCCCcEEEEEcCcccccccchhee
Confidence 48999999999999887644321 347899999999999852 3368999996553 378
Q ss_pred EEEeCCHHHHHHHHHHHHH
Q psy17173 533 IIVTKSPEDKKSWFSDLIM 551 (1108)
Q Consensus 533 ~l~a~s~eeK~~Wm~~L~~ 551 (1108)
.+.|.|.++-..|.+.+..
T Consensus 85 el~~~~~e~vdswkasflr 103 (110)
T cd01256 85 ELGCETLEEVDSWKASFLR 103 (110)
T ss_pred eecCCCHHHHHHHHHHHHh
Confidence 9999999999999987743
No 97
>KOG0690|consensus
Probab=95.30 E-value=0.017 Score=63.91 Aligned_cols=107 Identities=18% Similarity=0.192 Sum_probs=66.0
Q ss_pred eeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCC---Ccccccc
Q psy17173 445 YREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYEN---TDDIKNA 521 (1108)
Q Consensus 445 i~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d---~~~~~~a 521 (1108)
++||-|.|-+..-+.|..||+.||+|--++.-+.+.... ... ..+|++..|.+..- ...-.|.
T Consensus 16 vkEgWlhKrGE~IknWRpRYF~l~~DG~~~Gyr~kP~~~---~~~-----------p~pLNnF~v~~cq~m~~erPrPnt 81 (516)
T KOG0690|consen 16 VKEGWLHKRGEHIKNWRPRYFLLFNDGTLLGYRSKPKEV---QPT-----------PEPLNNFMVRDCQTMKTERPRPNT 81 (516)
T ss_pred HHhhhHhhcchhhhcccceEEEEeeCCceEeeccCCccC---CCC-----------cccccchhhhhhhhhhccCCCCce
Confidence 444445544443344579999999998888766554321 000 13444444444331 1234688
Q ss_pred EEeecCCCC---eEEEEeCCHHHHHHHHHHHHHHHhhHHHHHhhhhh
Q psy17173 522 FEIAPRDQP---SIIIVTKSPEDKKSWFSDLIMVNTKSMLERTLDSI 565 (1108)
Q Consensus 522 F~I~~~~~~---~~~l~a~s~eeK~~Wm~~L~~l~~~s~l~~~lds~ 565 (1108)
|.|..-.=. .-+|++.|+++|++|+.+|.++..+.+.....+..
T Consensus 82 FiiRcLQWTTVIERTF~ves~~eRq~W~~AIq~vsn~l~q~e~~~tn 128 (516)
T KOG0690|consen 82 FIIRCLQWTTVIERTFYVESAEERQEWIEAIQAVSNRLKQEELMDTN 128 (516)
T ss_pred EEEEeeeeeeeeeeeeecCCHHHHHHHHHHHHHHhhhhhhhhhcccC
Confidence 888854311 34899999999999999998887666655544433
No 98
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=95.17 E-value=0.09 Score=51.33 Aligned_cols=94 Identities=14% Similarity=0.148 Sum_probs=55.4
Q ss_pred CCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCccccccEEeecCCCCeEEEEe
Q psy17173 457 SNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNAFEIAPRDQPSIIIVT 536 (1108)
Q Consensus 457 ~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~~aF~I~~~~~~~~~l~a 536 (1108)
++.++..|+.|-...|.+.|........ ................+.|......-..|=..-+|.|.+...++..|.|+|
T Consensus 23 ~R~Wk~~y~vL~g~~L~~~k~~~~~~~~-~~~~~~~~~~~~p~~~i~L~~a~a~~a~dY~Kr~~VFrL~~~dg~e~Lfqa 101 (119)
T PF15410_consen 23 KRSWKQVYAVLQGGQLYFYKDEKSPASS-TPPDIQSVENAKPDSSISLHHALAEIASDYTKRKNVFRLRTADGSEYLFQA 101 (119)
T ss_dssp ---EEEEEEEEETTEEEEESSHHHHCCT--BS---SS--E-----EE-TT-EEEEETTBTTCSSEEEEE-TTS-EEEEE-
T ss_pred CCCccEEeEEEECCEEEEEccCcccccC-CcccccccccCcceeEEEecceEEEeCcccccCCeEEEEEeCCCCEEEEEC
Confidence 3456799999999999999974321100 000000111223334567776666554454446899999988899999999
Q ss_pred CCHHHHHHHHHHHHH
Q psy17173 537 KSPEDKKSWFSDLIM 551 (1108)
Q Consensus 537 ~s~eeK~~Wm~~L~~ 551 (1108)
.|.++.+.|++.|.-
T Consensus 102 ~~~~~m~~Wi~~IN~ 116 (119)
T PF15410_consen 102 SDEEEMNEWIDAINY 116 (119)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999999999864
No 99
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=95.16 E-value=0.037 Score=47.83 Aligned_cols=64 Identities=9% Similarity=0.251 Sum_probs=57.2
Q ss_pred ccchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHh
Q psy17173 114 VISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMY 178 (1108)
Q Consensus 114 ~fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~ 178 (1108)
.+|.+-|.++.+.+.. .||+..+.-.|+-.+||-..+|++-|-++++..+++.++.+||..|++
T Consensus 2 ~~p~~~i~ria~~~Gi-~ris~~a~~~l~~~~e~rl~~i~~~A~k~~~hakRktlt~~DI~~Alk 65 (65)
T smart00803 2 WLPKETIKDVAESLGI-GNLSDEAAKLLAEDVEYRIKEIVQEALKFMRHSKRTTLTTSDIDSALR 65 (65)
T ss_pred CCCHHHHHHHHHHCCC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeecHHHHHHHhC
Confidence 3788899999965444 599999999999999999999999999999999999999999998863
No 100
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=95.01 E-value=0.14 Score=50.14 Aligned_cols=93 Identities=12% Similarity=0.125 Sum_probs=55.0
Q ss_pred eeeeEEEe--CCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCC----ccccc
Q psy17173 447 EDTLMKYD--GKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENT----DDIKN 520 (1108)
Q Consensus 447 eG~L~k~~--~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~----~~~~~ 520 (1108)
.|-|.+.. ++-+.++.|++.|-...|-+-+.... .. .-.-.+.|.|.++.+....+. ..-+|
T Consensus 4 ~GfL~~~q~~~~~k~W~RRWFvL~g~~L~y~k~p~d-~~-----------~~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~ 71 (122)
T cd01263 4 HGFLTMFEDTSGFGAWHRRWCALEGGEIKYWKYPDD-EK-----------RKGPTGLIDLSTCTSSEGASAVRDICARPN 71 (122)
T ss_pred ceeEEEEeccCCCCCceEEEEEEeCCEEEEEcCCCc-cc-----------cCCceEEEEhhhCcccccccCChhhcCCCC
Confidence 35555422 33344567777777555555443222 10 112345677777777666433 23378
Q ss_pred cEEeecC----------------CC---CeEEEEeCCHHHHHHHHHHHHH
Q psy17173 521 AFEIAPR----------------DQ---PSIIIVTKSPEDKKSWFSDLIM 551 (1108)
Q Consensus 521 aF~I~~~----------------~~---~~~~l~a~s~eeK~~Wm~~L~~ 551 (1108)
+|.|... +. ..+.|.|.|.+|+++||++|.+
T Consensus 72 tF~i~~~~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~ 121 (122)
T cd01263 72 TFHLDVWRPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNS 121 (122)
T ss_pred eEEEEEecccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhc
Confidence 9999631 00 0256779999999999999964
No 101
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.35 E-value=0.24 Score=46.87 Aligned_cols=79 Identities=11% Similarity=0.106 Sum_probs=48.4
Q ss_pred eEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCccccccEEeec---CCCCeEEEEeCC
Q psy17173 462 ERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNAFEIAP---RDQPSIIIVTKS 538 (1108)
Q Consensus 462 er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~~aF~I~~---~~~~~~~l~a~s 538 (1108)
.++.|-|.|..|.+=+++.... +.+ ...+.+.++.|..-..-+.-++.|++.. .+...|.|.|.|
T Consensus 21 KrrwF~lk~~~L~YyK~kee~~------~~p------~i~lnl~gcev~~dv~~~~~kf~I~l~~ps~~~~r~y~l~cds 88 (106)
T cd01237 21 KQYWFTFRDTSISYYKSKEDSN------GAP------IGQLNLKGCEVTPDVNVAQQKFHIKLLIPTAEGMNEVWLRCDN 88 (106)
T ss_pred eeEEEEEeCCEEEEEccchhcC------CCC------eEEEecCceEEcccccccccceEEEEecCCccCCeEEEEECCC
Confidence 4566777666665554433210 011 1245566666654433334467777772 234589999999
Q ss_pred HHHHHHHHHHHHHH
Q psy17173 539 PEDKKSWFSDLIMV 552 (1108)
Q Consensus 539 ~eeK~~Wm~~L~~l 552 (1108)
+++.++||++++.+
T Consensus 89 Eeqya~Wmaa~rla 102 (106)
T cd01237 89 EKQYAKWMAACRLA 102 (106)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998654
No 102
>PF15409 PH_8: Pleckstrin homology domain
Probab=94.20 E-value=0.58 Score=43.04 Aligned_cols=74 Identities=18% Similarity=0.169 Sum_probs=50.9
Q ss_pred cceeEEEEe-ecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCccccccEEeecCCCCeEEEEeC
Q psy17173 459 RLTERKVYF-FDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNAFEIAPRDQPSIIIVTK 537 (1108)
Q Consensus 459 ~~~er~~FL-F~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~~aF~I~~~~~~~~~l~a~ 537 (1108)
.++.|||.| |++-.|-.-.... .-++++.+++....|.-..+ ...|.|.+. ...|.|.|.
T Consensus 13 G~~kRyFvL~~~~G~LsYy~~~~--------------~~~~rGsi~v~~a~is~~~~----~~~I~idsg-~~i~hLKa~ 73 (89)
T PF15409_consen 13 GWHKRYFVLDFEKGTLSYYRNQN--------------SGKLRGSIDVSLAVISANKK----SRRIDIDSG-DEIWHLKAK 73 (89)
T ss_pred CceeEEEEEEcCCcEEEEEecCC--------------CCeeEeEEEccceEEEecCC----CCEEEEEcC-CeEEEEEcC
Confidence 346899999 6655554433322 11678888888765533222 246777654 458999999
Q ss_pred CHHHHHHHHHHHHH
Q psy17173 538 SPEDKKSWFSDLIM 551 (1108)
Q Consensus 538 s~eeK~~Wm~~L~~ 551 (1108)
|+++.+.|+++|..
T Consensus 74 s~~~f~~Wv~aL~~ 87 (89)
T PF15409_consen 74 SQEDFQRWVSALQK 87 (89)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999999965
No 103
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=93.83 E-value=0.59 Score=45.79 Aligned_cols=36 Identities=17% Similarity=0.364 Sum_probs=30.2
Q ss_pred CccccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHH
Q psy17173 515 TDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIM 551 (1108)
Q Consensus 515 ~~~~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~ 551 (1108)
..+..++|.|... +.+|.|.|+|+.+.++|+++|..
T Consensus 85 ~~~~~~~~~i~t~-~R~~~l~a~s~~~~~~Wi~~i~~ 120 (121)
T cd01254 85 ITGLRHGLKITNS-NRSLKLKCKSSRKLKQWMASIED 120 (121)
T ss_pred cCCCceEEEEEcC-CcEEEEEeCCHHHHHHHHHHHHh
Confidence 3456789999765 56899999999999999999864
No 104
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=93.35 E-value=0.12 Score=47.61 Aligned_cols=68 Identities=15% Similarity=0.246 Sum_probs=59.8
Q ss_pred CCCcccchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHh
Q psy17173 110 KSSLVISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMY 178 (1108)
Q Consensus 110 r~~l~fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~ 178 (1108)
.-.+.+|+--|.|++|+. ...||+++|...++.++|-+..+|.+-|..+|.+-+++-|+++||.+|+.
T Consensus 15 ~~~~~Lp~apv~Ri~r~~-~~~Rvs~~A~~~l~~~~e~~~~~i~~~A~~~A~ha~RKTV~~~DI~la~~ 82 (91)
T COG2036 15 STDLLLPKAPVRRILRKA-GAERVSSSAIEELQEALEEYLEEIAEDAVELAEHAKRKTVKAEDIKLALK 82 (91)
T ss_pred hhhhhcCchHHHHHHHHH-hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHH
Confidence 345668888888888643 33599999999999999999999999999999999999999999999975
No 105
>KOG3524|consensus
Probab=93.13 E-value=0.29 Score=59.21 Aligned_cols=170 Identities=3% Similarity=-0.234 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC----CCHHhHhhhccCHHHHHHHHHHHHHHHHHhhccCCCCCcchh
Q psy17173 212 QVVNDFVAEEKLFIRELKLILKIFYEELNKITPL----KEIKEVHSLFEIIEEIYNLTVCLLGAVEDISEMSSDDHCIGS 287 (1108)
Q Consensus 212 evi~ELi~TEr~Yv~~L~~ii~~f~~pl~~~~~l----~~~~~i~~IFsNIeeI~~~~~~fL~~Le~~~~~~~~~~~IG~ 287 (1108)
+.-.+|+.|+-+|+..+-..+..+..|+...... ....+|..+|+.|.|++..+..--.++++-....- +---+
T Consensus 397 snyv~il~Ti~~lf~~kleei~e~~~pil~~~eiktifgn~l~I~~vh~k~~D~l~~l~~nw~e~k~el~kay--ppyvn 474 (850)
T KOG3524|consen 397 SNYVFILRTIVALFFGKLEEILELHEPILARLEIKTIFGNTLLIVVVHKKNDDKLLDLAQNWIEAKEELKKAY--PPYVN 474 (850)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhCCcccCchhhcccccCchhhhhhhccchHHHHHHHHhhHHHHHHHHHhc--cchhh
Confidence 4788999999999999888888999998765332 24489999999999999887777666665444432 22222
Q ss_pred HHHhhhhcccchhHHHHHhhhccHHHHHHHHHHhcChhhHHHHHHhcccccccccccccccccccccchHhHHHHHHHHH
Q psy17173 288 CFEEFAEDAEFDVYEKLLHNIVNQKSIEVLSMHVTQPSILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYIKIFH 367 (1108)
Q Consensus 288 ~F~~~a~~~~f~~Y~~Yc~N~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~slLi~PvQRI~rY~LLLkeLl 367 (1108)
.|.. .+-...||.-. ...|-.+++..+....|-..+..-..++...+--.++.|+|++++ +++..+.
T Consensus 475 ffet------~ke~~~~cdre-----~prfhaflKinq~kpecgRq~l~dlmirpvqrlpsvilllndl~k--~s~N~dk 541 (850)
T KOG3524|consen 475 FFET------IKELFDKCDRE-----NPRFHAFLKINQSKPECGRQKLTDLMIRPVQRLPSVILLLNDMAK--KSDNKDK 541 (850)
T ss_pred HHHH------hHHHHHHHhcc-----chHHHHHHHccccchhhhhhcccchhccchhhhhHHHHHHHHHHh--hccCcch
Confidence 3322 23344566543 344444444333333343333333333333333467889999999 8899999
Q ss_pred hcCCCCc-hHHHHHHHHHHHHHHHHHHhhh
Q psy17173 368 SLTDSSK-DKECLEQAQGLLAPLQISLSKI 396 (1108)
Q Consensus 368 K~Tp~~h-D~~~L~~A~~~~~~v~~~ine~ 396 (1108)
+++++.. +...+..++...++.....++.
T Consensus 542 ~~leea~kaikev~khInedKrkte~~~~i 571 (850)
T KOG3524|consen 542 NNLEEAAKAIKEVLKHINEDKRKTENFISI 571 (850)
T ss_pred hhHHHhhhhHHHHHHHhchhHHHHHHHHHH
Confidence 9998887 8888888888888888877763
No 106
>PLN00035 histone H4; Provisional
Probab=92.99 E-value=0.17 Score=47.48 Aligned_cols=63 Identities=11% Similarity=0.209 Sum_probs=58.9
Q ss_pred cchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHh
Q psy17173 115 ISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMY 178 (1108)
Q Consensus 115 fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~ 178 (1108)
+|..-|.|++|++- ..||++.+...+..|||....+|++-|..|++..+++-|+.+||..|+.
T Consensus 30 ipk~~IrRLARr~G-vkRIS~~ay~elr~vle~~l~~I~~dav~ya~HA~RKTV~~~DV~~Alk 92 (103)
T PLN00035 30 ITKPAIRRLARRGG-VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALK 92 (103)
T ss_pred CCHHHHHHHHHHcC-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHH
Confidence 88999999998765 7899999999999999999999999999999999999999999999975
No 107
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=92.94 E-value=0.18 Score=45.91 Aligned_cols=63 Identities=11% Similarity=0.206 Sum_probs=58.2
Q ss_pred cchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHh
Q psy17173 115 ISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMY 178 (1108)
Q Consensus 115 fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~ 178 (1108)
+|..-|.|+.|+|. ..||++.+---+..++|....+|+.-|..|++..+++.|+.+||.+|+.
T Consensus 14 i~k~~I~RLarr~G-vkRIS~d~y~e~~~~l~~~l~~I~~dav~ya~Ha~RKTVt~~DV~~alk 76 (85)
T cd00076 14 ITKPAIRRLARRGG-VKRISGGVYDEVRNVLKSYLEDVIRDAVTYTEHAKRKTVTAMDVVYALK 76 (85)
T ss_pred CCHHHHHHHHHHcC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHH
Confidence 78899999998776 7899999888899999999999999999999999999999999999975
No 108
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=92.78 E-value=0.68 Score=56.37 Aligned_cols=101 Identities=18% Similarity=0.142 Sum_probs=64.7
Q ss_pred cceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCcccccc
Q psy17173 442 EEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNA 521 (1108)
Q Consensus 442 r~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~~a 521 (1108)
..+.++|.+.+.....+ ++.||+.+.++.+.++........ ...+...... .+.++......+.....+.
T Consensus 375 sDv~~~G~l~k~~~~~~-wk~ry~~l~~~~l~~~~~~~~~~~---~~~~~~~~l~------~~~~v~pv~~~~~~~~~~~ 444 (478)
T PTZ00267 375 SDVTHGGYLYKYSSDMR-WKKRYFYIGNGQLRISLSENPEND---GVAPKSVNLE------TVNDVFPVPEVYSQKHPNQ 444 (478)
T ss_pred CCcccceEEeccCCCcc-hhhheEEecCCceEEEeccccccC---CCCCccccHH------HhcccccccHHhcCCCCce
Confidence 46778888888777654 589999999988888755322110 0000000111 1222222211122234788
Q ss_pred EEeecCCCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17173 522 FEIAPRDQPSIIIVTKSPEDKKSWFSDLIMV 552 (1108)
Q Consensus 522 F~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l 552 (1108)
|.|..+.++.+.|.|.|++++++||.+|...
T Consensus 445 ~~i~~~~~~~~~~~~~~~~~~~~W~~~~~~~ 475 (478)
T PTZ00267 445 LVLWFNNGQKIIAYAKTAEDRDQWISKFQRA 475 (478)
T ss_pred EEEEecCCcEEEEecCChHHHHHHHHHHHHH
Confidence 9998888889999999999999999999753
No 109
>KOG0521|consensus
Probab=91.53 E-value=2.3 Score=54.31 Aligned_cols=263 Identities=15% Similarity=0.135 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCcchhHHHhhhhcccchhHHHHHhhhccHHHHHHHHHHhcChh--hHHHHHHhcc
Q psy17173 258 IEEIYNLTVCLLGAVEDISEMSSDDHCIGSCFEEFAEDAEFDVYEKLLHNIVNQKSIEVLSMHVTQPS--ILNTLQFAGY 335 (1108)
Q Consensus 258 IeeI~~~~~~fL~~Le~~~~~~~~~~~IG~~F~~~a~~~~f~~Y~~Yc~N~~~~~a~~~l~~l~~~~~--~~~~~~~~~~ 335 (1108)
+.++..+|..|..+++..+..+-....=||++.-- + . -+.+..=+.+| +.++..+.++.++.+ +.......-+
T Consensus 89 ~~e~~~~~~~L~~q~~~~~~~~l~~f~k~dl~~v~-~-~-kk~f~ka~~~~--d~a~~k~~~l~k~~~~~~~~e~~~~l~ 163 (785)
T KOG0521|consen 89 LRELGTYHTELRSQLAHTLSLPLSQFVKGDLHEVK-E-L-KKLFEKASEEY--DLALVKYSRLPKKRRSKVKTEVEEELA 163 (785)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh-h-h-hHHHHHHHhhH--HHHHHHhhhhhhccccchhHHHHHHHH
Confidence 45677788888888887766554333334444321 1 1 12333344445 355555555554432 1111110000
Q ss_pred -cccccccccccccccccccchHhHHHHHHHHHhcCCCC----c-hHHHHHHHHHHHHHHHHHHhhhhhhhcCcccccch
Q psy17173 336 -GFKECVKYYLPNLLMSPLYHCNLYFEYIKIFHSLTDSS----K-DKECLEQAQGLLAPLQISLSKISLEKNGKNACVRN 409 (1108)
Q Consensus 336 -~~~~~~~~~L~slLi~PvQRI~rY~LLLkeLlK~Tp~~----h-D~~~L~~A~~~~~~v~~~ine~~~~k~~~~~~~~~ 409 (1108)
..+....-.|+=++-.=+.-..|=+.+|+-++...... + .+.-+.+.-.-+++|+.++... +.
T Consensus 164 ~~r~~f~~~~~~y~~~ln~~q~kk~~~~le~~l~~~~aq~~fF~~g~~l~~~m~p~~~~i~~~v~ql-----------~~ 232 (785)
T KOG0521|consen 164 AARRKFQLTALDYVLALNVLQAKKQFEILETLLGFMHAQINFFKQGEDLLSQMDPYIKKVATYVQQL-----------RE 232 (785)
T ss_pred HHHHHHHHHHHHHHHhhhhhhcccchHHHHHHHHHHHhccchhcccHhHHhhhhHHHHHHHHHHHHH-----------HH
Confidence 00000001111122222333445556677777665544 2 4445555555566666666553 11
Q ss_pred hhhhhhHHHHHHHHHHHhhccC--CCccccccc-----ccceeeeeeeEEEeCC-CCcceeEEEEeecCeEEEEecCCCC
Q psy17173 410 YNRVKHLQSLEKIHELKKNVDG--VDVRDLRPY-----LEEFYREDTLMKYDGK-SNRLTERKVYFFDGVLILCKSNKKI 481 (1108)
Q Consensus 410 ~e~~rk~~~~~kl~eiq~~I~g--~~~~~l~~~-----~r~li~eG~L~k~~~~-~~~~~er~~FLF~d~Ll~~k~~~~~ 481 (1108)
.-...+....+++++++...+- ....+...+ .....+.|.+.+-.+. .+-+..|+++.=+..+.+-++....
T Consensus 233 ~~~~e~~am~~~~q~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~k~~~~~~tw~r~~f~~q~~~l~~~~r~~~~ 312 (785)
T KOG0521|consen 233 ESDAEQRAMEQRYQELRSASNLESRPKSDSASPSGGNLKLGYRMEGYLRKKASNASKTWKRRWFSIQDGQLGYQHRGADA 312 (785)
T ss_pred hhHHHHHHHHhHHHHHHHHhhhhhhccccccccccccccchhhhhhhhhhhcccchhhHHhhhhhhhccccccccccccc
Confidence 1111111222344444443211 001000000 0112233333322222 2223345555444333333322211
Q ss_pred ccccccccccCcceeEEEEEeeccCeEEeecCCCccccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17173 482 SVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMV 552 (1108)
Q Consensus 482 ~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l 552 (1108)
.+ .....++.+.|...++..+.++.|+|.+ ..++++++|.+..+...|+.+|...
T Consensus 313 -------------~~--~~~~dL~~csvk~~~~~~drr~CF~iiS-~tks~~lQAes~~d~~~Wi~~i~ns 367 (785)
T KOG0521|consen 313 -------------EN--VLIEDLRTCSVKPDAEQRDRRFCFEIIS-PTKSYLLQAESEKDCQDWISALQNS 367 (785)
T ss_pred -------------cc--cccccchhccccCCcccccceeeEEEec-CCcceEEecCchhHHHHHHHHHHHH
Confidence 11 2244666777777777667899999998 5779999999999999999999543
No 110
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=90.74 E-value=4.9 Score=38.95 Aligned_cols=41 Identities=20% Similarity=0.452 Sum_probs=32.3
Q ss_pred CCccccccEEeecCC------CCeEEEEeCCHHHHHHHHHHHHHHHh
Q psy17173 514 NTDDIKNAFEIAPRD------QPSIIIVTKSPEDKKSWFSDLIMVNT 554 (1108)
Q Consensus 514 d~~~~~~aF~I~~~~------~~~~~l~a~s~eeK~~Wm~~L~~l~~ 554 (1108)
+..++...|+|.... ..+..|.|.|..||++|+.+|..++.
T Consensus 74 ~~kDiP~If~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l~~ 120 (122)
T cd01243 74 SKKDIPCIFRVTTSQISASSSKCSTLMLADTEEEKSKWVGALSELHK 120 (122)
T ss_pred CcccCCeEEEEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHHHh
Confidence 445678899998543 23688899999999999999987753
No 111
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=90.28 E-value=2.4 Score=40.34 Aligned_cols=87 Identities=11% Similarity=0.329 Sum_probs=51.1
Q ss_pred cceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeec--CCCccccccEEeecCC-CCeEEEE
Q psy17173 459 RLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDY--ENTDDIKNAFEIAPRD-QPSIIIV 535 (1108)
Q Consensus 459 ~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~--~d~~~~~~aF~I~~~~-~~~~~l~ 535 (1108)
.++..|+.|-+.-|++.-....+..+ .....+.+...+..+.+.-.|. .+..++...|+|...+ ..++.+.
T Consensus 19 gW~r~yvVv~~~Kl~lYd~e~~~~~~------~p~~vldl~~~fhv~~V~asDVi~a~~kDiP~IF~I~~~~~~~~lllL 92 (112)
T cd01242 19 GWKKQYVVVSSRKILFYNDEQDKENS------TPSMILDIDKLFHVRPVTQGDVYRADAKEIPKIFQILYANEARDLLLL 92 (112)
T ss_pred CceEEEEEEeCCEEEEEecCccccCC------CcEEEEEccceeeeecccHHHeeecCcccCCeEEEEEeCCccceEEEE
Confidence 45677777776666555533221110 0111233333333333332222 2455678899999654 3478999
Q ss_pred eCCHHHHHHHHHHHHH
Q psy17173 536 TKSPEDKKSWFSDLIM 551 (1108)
Q Consensus 536 a~s~eeK~~Wm~~L~~ 551 (1108)
|.|.+||+.|+.+|.+
T Consensus 93 A~s~~ek~kWV~~L~~ 108 (112)
T cd01242 93 APQTDEQNKWVSRLVK 108 (112)
T ss_pred eCCchHHHHHHHHHHH
Confidence 9999999999999975
No 112
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=89.03 E-value=2.2 Score=40.43 Aligned_cols=47 Identities=15% Similarity=0.331 Sum_probs=34.4
Q ss_pred eeccCeEEeecCCCccccccEEeecCCC-CeEEEEeCCHHHHHHHHHHH
Q psy17173 502 YFLRKVEINDYENTDDIKNAFEIAPRDQ-PSIIIVTKSPEDKKSWFSDL 549 (1108)
Q Consensus 502 i~l~~~~I~d~~d~~~~~~aF~I~~~~~-~~~~l~a~s~eeK~~Wm~~L 549 (1108)
+.|..+.+. ..|..+-.+.|+|...+. .+++|+|.|+.+++.||+++
T Consensus 54 ~~l~sc~~r-~~~~~dRRFCFei~~~~~~~~~~lQA~Se~~~~~Wi~A~ 101 (104)
T cd01249 54 LTLKSCSRR-KTESIDKRFCFDVEVEEKPGVITMQALSEKDRRLWIEAM 101 (104)
T ss_pred Eeeeecccc-ccCCccceeeEeeeecCCCCeEEEEecCHHHHHHHHHhh
Confidence 334444443 334445678999986654 37999999999999999987
No 113
>smart00417 H4 Histone H4.
Probab=88.66 E-value=0.59 Score=41.39 Aligned_cols=60 Identities=10% Similarity=0.185 Sum_probs=53.3
Q ss_pred cchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhh
Q psy17173 115 ISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDV 175 (1108)
Q Consensus 115 fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~ 175 (1108)
.|..-|.|++|+| -..||++.+-..+..|||....+|+.-|..|++..+++.++.+||..
T Consensus 14 I~k~~IrRLaRr~-GvkRIS~~~y~elr~vle~~l~~I~rdav~~a~ha~RKTV~~~DV~~ 73 (74)
T smart00417 14 ITKPAIRRLARRG-GVKRISGLIYDETRNVLKSFLENVVRDAVTYTEHARRKTVTAMDVVY 73 (74)
T ss_pred CCHHHHHHHHHHc-CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHhee
Confidence 6788999999765 44899999999999999999999999999999999999999888753
No 114
>PTZ00015 histone H4; Provisional
Probab=86.98 E-value=1.2 Score=42.09 Aligned_cols=63 Identities=11% Similarity=0.226 Sum_probs=56.3
Q ss_pred cchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHh
Q psy17173 115 ISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMY 178 (1108)
Q Consensus 115 fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~ 178 (1108)
.|..-|.|+++++ -..||++.+-..+..|||....+|+.-|..|++..+++-|+.+||.+|+.
T Consensus 31 I~k~~IrRLarr~-GvkRIS~d~y~e~r~vle~~l~~I~rdav~~aeHA~RKTVt~~DV~~AlK 93 (102)
T PTZ00015 31 ITKGAIRRLARRG-GVKRISGDIYEEVRGVLKAFLENVVRDSTAYTEYARRKTVTAMDVVYALK 93 (102)
T ss_pred CCHHHHHHHHHHc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 6778888999644 45899999999999999999999999999999999999999999999975
No 115
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=85.86 E-value=1.6 Score=38.60 Aligned_cols=64 Identities=9% Similarity=0.179 Sum_probs=57.1
Q ss_pred chhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhc
Q psy17173 116 SIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMYA 179 (1108)
Q Consensus 116 pv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~~ 179 (1108)
+-..+..++++..-..|++..|...|+.+.|=...+|++-|..+|++.++..+.++||++++..
T Consensus 3 ~k~~l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAkHr~~~tv~~~Di~l~l~r 66 (72)
T cd07981 3 TKRKLQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLAKHRKSDTLEVKDVQLHLER 66 (72)
T ss_pred cHHHHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 4567788887766678999999999999999999999999999999999999999999999764
No 116
>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi
Probab=85.45 E-value=1.2 Score=43.37 Aligned_cols=61 Identities=16% Similarity=0.227 Sum_probs=54.1
Q ss_pred hHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhc
Q psy17173 118 DRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMYA 179 (1108)
Q Consensus 118 ~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~~ 179 (1108)
--|++.|++ .-..+++..++..|.-.++-.+.+||+-|-.+++..++..|+.+||++|+..
T Consensus 5 ~~v~~iLk~-~Gv~~~~~~v~~~Lle~~~ry~~~il~dA~~~a~hA~r~tV~~eDV~lAi~~ 65 (117)
T cd07979 5 RVIAAILKS-MGITEYEPRVINQLLEFAYRYTTDVLDDAKVYSEHAGKANIDADDVKLAIQS 65 (117)
T ss_pred HHHHHHHHH-CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 457888964 3446899999999999999999999999999999999999999999999875
No 117
>KOG2059|consensus
Probab=85.10 E-value=6.1 Score=48.58 Aligned_cols=94 Identities=17% Similarity=0.211 Sum_probs=69.0
Q ss_pred cceeeeeeeEEEeCCCC-----cceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCC-
Q psy17173 442 EEFYREDTLMKYDGKSN-----RLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENT- 515 (1108)
Q Consensus 442 r~li~eG~L~k~~~~~~-----~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~- 515 (1108)
--..++|.+.+...+.. ..+.||+-|-+.-|.+.|...... ...|++.+|.-.+.-+.
T Consensus 563 p~v~k~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls~~Ksp~~q~----------------~~~Ipl~nI~avEklee~ 626 (800)
T KOG2059|consen 563 PVVLKEGLMIKRAQGRGRFGKKNFKKRYFRLTTEELSYAKSPGKQP----------------IYTIPLSNIRAVEKLEEK 626 (800)
T ss_pred CceecccceEeccccccchhhhhhhheEEEeccceeEEecCCccCc----------------ccceeHHHHHHHHHhhhh
Confidence 34566666666554332 236899999999999998765432 23567777776554333
Q ss_pred -ccccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17173 516 -DDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMV 552 (1108)
Q Consensus 516 -~~~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l 552 (1108)
=+.+|.|+|+..+ .+..++|++..|-+.|+++|++.
T Consensus 627 sF~~knv~qVV~~d-rtly~Q~~n~vEandWldaL~kv 663 (800)
T KOG2059|consen 627 SFKMKNVFQVVHTD-RTLYVQAKNCVEANDWLDALRKV 663 (800)
T ss_pred ccCCCceEEEEecC-cceeEecCCchHHHHHHHHHHHH
Confidence 3358999999987 58999999999999999999774
No 118
>KOG3522|consensus
Probab=84.77 E-value=4.7 Score=50.46 Aligned_cols=244 Identities=13% Similarity=0.067 Sum_probs=114.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHhHhhhccCHHHHHHHHHHHHHHHHHhhccCCCCCcch
Q psy17173 208 LHYEQVVNDFVAEEKLFIRELKLILKIFYEELNKIT-PLKEIKEVHSLFEIIEEIYNLTVCLLGAVEDISEMSSDDHCIG 286 (1108)
Q Consensus 208 ~sy~evi~ELi~TEr~Yv~~L~~ii~~f~~pl~~~~-~l~~~~~i~~IFsNIeeI~~~~~~fL~~Le~~~~~~~~~~~IG 286 (1108)
++|.++.+-+++.+.+|++. +.. ..+=+++.+.- .+.+.-+++..|----.....+..+-..+=+.+-.+.....|+
T Consensus 13 q~yv~sL~t~vd~y~qpL~~-~~~-l~~~~~~~eif~~i~ell~~he~fl~~l~s~~~~w~~qq~vga~~v~~fSk~~v~ 90 (925)
T KOG3522|consen 13 QSYVESLHTGVDRYVQPLKE-RKV-LIDPRDVDEIFQNIPELLEIHEDFLEQLCSRDQQWDEQQKVGASFVYSFSKTAVL 90 (925)
T ss_pred HHHHHHHHHHHHHhhccccc-ccc-ccCCchHHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhHHHHH
Confidence 67888888888888888876 211 11111111110 0111123444443333333334444444444444454456799
Q ss_pred hHHHhhhhc-ccchhHHHHHhhhccHHHHHHHHHHhcChhhHHHHHHhcccccccccccccccccccccchHhHHHHHHH
Q psy17173 287 SCFEEFAED-AEFDVYEKLLHNIVNQKSIEVLSMHVTQPSILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYIKI 365 (1108)
Q Consensus 287 ~~F~~~a~~-~~f~~Y~~Yc~N~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~slLi~PvQRI~rY~LLLke 365 (1108)
++|-.+... ..-+.|..|.+ +|... .|.+++.+|++-.+- +.|.-+--+|.+|-.|-.|.+-.
T Consensus 91 ~~Y~~y~nn~~~A~~~l~~~~---rpaf~-~Fl~l~~kPr~P~y~------------lll~mlkhtp~~Hpdr~~Lq~al 154 (925)
T KOG3522|consen 91 AAYSKYVNNFKRAKCALRNKK---RPAFS-KFLELMIKPRFPRYE------------LLLQMLKHTPLDHPDRLILQLAL 154 (925)
T ss_pred HHHHHHHhchhHHHHHHHHhc---chHHH-HHHHHHhccCCchHH------------HHHHHhhcCCcCCCchHHHHHHH
Confidence 999776321 22345555555 23444 444466666332211 22332334577776665554433
Q ss_pred HHhcCCCCc--hHHHHHHHHHHHHHHHHHHhhhhhhhcCcccccchhhhhhhHHHHHHHHHHHhhccCCCc-cccc-ccc
Q psy17173 366 FHSLTDSSK--DKECLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKNVDGVDV-RDLR-PYL 441 (1108)
Q Consensus 366 LlK~Tp~~h--D~~~L~~A~~~~~~v~~~ine~~~~k~~~~~~~~~~e~~rk~~~~~kl~eiq~~I~g~~~-~~l~-~~~ 441 (1108)
.+-++-..+ ++..+..-.+.++.+...|+.....++..++- .|+... +++.....+-++ .+.. -..
T Consensus 155 ~~~~~~ae~ine~kr~a~~~~e~q~~~rei~~r~el~e~L~ag------~r~lLl----~dl~se~vy~~rk~d~~~~~~ 224 (925)
T KOG3522|consen 155 TLLETLAEKINEHKRFADEINELQAALREIEVRSELMEDLGAG------RRQLLL----QDLVSETVYTGRKKDRKAFLF 224 (925)
T ss_pred HhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccc------hHHHHH----HHHhhhhhhccccchhhheee
Confidence 332222222 33333333344444444444422222222221 122221 111111111111 2222 235
Q ss_pred cceeeeeeeEEEeCCCCcc--------eeEEEEeecCeEEEEecCC
Q psy17173 442 EEFYREDTLMKYDGKSNRL--------TERKVYFFDGVLILCKSNK 479 (1108)
Q Consensus 442 r~li~eG~L~k~~~~~~~~--------~er~~FLF~d~Ll~~k~~~ 479 (1108)
|.||.-+.|++..+..++. .-+|.+||++.|.+.+..+
T Consensus 225 rd~i~~~~Lk~~sg~~r~~~t~as~vdt~ky~~lw~~~L~~~~vvk 270 (925)
T KOG3522|consen 225 RDLIVNTDLKRASGSSRKPSTAASVVDTAKYKLLWKDPLVFADVVK 270 (925)
T ss_pred eeeeeeeeeeeeeceecCCccccccccccceeeeeccccchhheee
Confidence 7888888888777655541 1289999999999888765
No 119
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=81.02 E-value=14 Score=36.19 Aligned_cols=35 Identities=20% Similarity=0.334 Sum_probs=27.9
Q ss_pred cccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHHh
Q psy17173 519 KNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVNT 554 (1108)
Q Consensus 519 ~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~~ 554 (1108)
.+.|.|... +.++.|.|.|.++.+-|+++|.-+..
T Consensus 88 ~~si~i~t~-~R~L~l~a~s~~~~~~W~~aL~~L~~ 122 (123)
T PF12814_consen 88 NKSIIIVTP-DRSLDLTAPSRERHEIWFNALRYLLQ 122 (123)
T ss_pred ceEEEEEcC-CeEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 456666544 56999999999999999999976643
No 120
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=80.86 E-value=25 Score=33.48 Aligned_cols=90 Identities=14% Similarity=0.194 Sum_probs=58.0
Q ss_pred ccceeeeeeeEEEeCCCCcceeEEEEeecC-eEEEEecCCCCccccccccccCcceeEEEEEeecc-CeEEeecCCCccc
Q psy17173 441 LEEFYREDTLMKYDGKSNRLTERKVYFFDG-VLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLR-KVEINDYENTDDI 518 (1108)
Q Consensus 441 ~r~li~eG~L~k~~~~~~~~~er~~FLF~d-~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~-~~~I~d~~d~~~~ 518 (1108)
+..++++|.+.+..+=- .+.|++.|=+. -|+++.+.+. .+|+-|+++ .+.+.- .+.
T Consensus 10 ge~Il~~g~v~K~kgl~--~kkR~liLTd~PrL~Yvdp~~~----------------~~KGeI~~~~~l~v~~-k~~--- 67 (104)
T PF14593_consen 10 GELILKQGYVKKRKGLF--AKKRQLILTDGPRLFYVDPKKM----------------VLKGEIPWSKELSVEV-KSF--- 67 (104)
T ss_dssp T--EEEEEEEEEEETTE--EEEEEEEEETTTEEEEEETTTT----------------EEEEEE--STT-EEEE-CSS---
T ss_pred CCeEEEEEEEEEeeceE--EEEEEEEEccCCEEEEEECCCC----------------eECcEEecCCceEEEE-ccC---
Confidence 35788999998876533 24788888888 7888877654 456888887 334432 222
Q ss_pred cccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHHhh
Q psy17173 519 KNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVNTK 555 (1108)
Q Consensus 519 ~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~~~ 555 (1108)
..|.|... +.+|.|...+.. -..|.++|..+...
T Consensus 68 -~~F~I~tp-~RtY~l~d~~~~-A~~W~~~I~~~~~~ 101 (104)
T PF14593_consen 68 -KTFFIHTP-KRTYYLEDPEGN-AQQWVEAIEEVKKQ 101 (104)
T ss_dssp -SEEEEEET-TEEEEEE-TTS--HHHHHHHHHHHHHH
T ss_pred -CEEEEECC-CcEEEEECCCCC-HHHHHHHHHHHHHH
Confidence 37888877 668888775444 56799999876543
No 121
>cd08048 TAF11 TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypothes
Probab=77.64 E-value=6 Score=36.24 Aligned_cols=63 Identities=8% Similarity=0.141 Sum_probs=55.8
Q ss_pred cchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCc---ccccccchhhHHh
Q psy17173 115 ISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRK---VDISIQDIDVAMY 178 (1108)
Q Consensus 115 fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~---~~itp~~i~~a~~ 178 (1108)
||-..|.+++ ....+..++..+++-++++-.-...||.|.|-..-..... .-+.|+||.-|.+
T Consensus 17 f~k~~iKr~~-~~~~~~~v~~~v~i~v~glaKvFVGeivE~A~~V~~~~~~~~~~Pl~P~HireA~r 82 (85)
T cd08048 17 FPKAAIKRLI-QSVTGQSVSQNVVIAVAGIAKVFVGEIVEEARDVQEEWGEANTGPLQPRHLREAYR 82 (85)
T ss_pred ccHHHHHHHH-HHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcHHHHHHHH
Confidence 8888899998 6888899999999999999999999999999888777655 5599999999875
No 122
>KOG1451|consensus
Probab=76.58 E-value=1.9e+02 Score=35.38 Aligned_cols=38 Identities=18% Similarity=0.483 Sum_probs=29.2
Q ss_pred cCCCccccccEEeecCCCC-eEEEEeCCHHHHHHHHHHH
Q psy17173 512 YENTDDIKNAFEIAPRDQP-SIIIVTKSPEDKKSWFSDL 549 (1108)
Q Consensus 512 ~~d~~~~~~aF~I~~~~~~-~~~l~a~s~eeK~~Wm~~L 549 (1108)
..|+-+-.+.|.+...+.+ .++++|-|++++..||+++
T Consensus 325 ktdSIdKRFCFDve~~erpgviTmQALSE~drrlWmeAM 363 (812)
T KOG1451|consen 325 KTDSIDKRFCFDVEVEERPGVITMQALSEKDRRLWMEAM 363 (812)
T ss_pred cccccccceeeeeeecccCCeeehHhhhhhHHHHHHHHh
Confidence 3344444678888766533 8999999999999999987
No 123
>PF15277 Sec3-PIP2_bind: Exocyst complex component SEC3 N-terminal PIP2 binding PH; PDB: 3HIE_D 3A58_E.
Probab=76.33 E-value=19 Score=33.37 Aligned_cols=58 Identities=16% Similarity=0.185 Sum_probs=45.4
Q ss_pred ceeEEEEEeeccCeEEeecCCCccccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17173 494 YEFKCKEMYFLRKVEINDYENTDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVN 553 (1108)
Q Consensus 494 ~~y~~k~~i~l~~~~I~d~~d~~~~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~ 553 (1108)
..|+.....+|+++...|..+.+.....|.+.-. +.|...|.|.+||..++..|.++-
T Consensus 31 g~f~i~ktW~L~eL~~I~~~~~~~~~~~F~l~~~--k~y~W~a~s~~Ek~~Fi~~L~k~~ 88 (91)
T PF15277_consen 31 GSFQIGKTWDLDELKAIDGINPDKDTPEFDLTFD--KPYYWEASSAKEKNTFIRSLWKLY 88 (91)
T ss_dssp S-EEEEEEEEGGG--EEEE-SSS--TTEEEEESS--SEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CcEEEeeEEehhhceeeeeecCCCCCcCEEEEEC--CCcEEEeCCHHHHHHHHHHHHHHh
Confidence 3599999999999999998888766778988863 489999999999999999997753
No 124
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=73.88 E-value=49 Score=40.54 Aligned_cols=34 Identities=12% Similarity=0.411 Sum_probs=31.4
Q ss_pred ccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHH
Q psy17173 518 IKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIM 551 (1108)
Q Consensus 518 ~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~ 551 (1108)
-++.|-+..++++.+.|.|.+.++++.||.+|.+
T Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (496)
T PTZ00283 454 AAHVFAVAFKTGRRLLFQARSDPERDAWMQKIQS 487 (496)
T ss_pred CCcEEEEEecCCcEEEEecCCchhHHHHHHHHHH
Confidence 4789999999999999999999999999999854
No 125
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=73.74 E-value=4.9 Score=37.56 Aligned_cols=34 Identities=21% Similarity=0.360 Sum_probs=30.6
Q ss_pred ccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHH
Q psy17173 518 IKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIM 551 (1108)
Q Consensus 518 ~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~ 551 (1108)
-.|.|.+...++..|+|-|.++++.++||..|+.
T Consensus 73 ~~nTFvLK~~~~~eyI~Ea~d~~q~~SWla~Ir~ 106 (107)
T cd01231 73 NLYTFVLKVDDNTDIIFEVGDEQQLNSWLAELRY 106 (107)
T ss_pred cccEEEEEecCCceEEEEcCCHHHHHHHHHHHhc
Confidence 4589999988888999999999999999999864
No 126
>PF15406 PH_6: Pleckstrin homology domain
Probab=71.72 E-value=8.6 Score=36.50 Aligned_cols=31 Identities=16% Similarity=0.363 Sum_probs=24.5
Q ss_pred cccEEeecCCCCeEEEEeCCHHHHHHHHHHHH
Q psy17173 519 KNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLI 550 (1108)
Q Consensus 519 ~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~ 550 (1108)
.|.|.+... +...+|.|.|+.||+.|+.+|.
T Consensus 80 ~~kF~f~~~-G~khtF~A~s~aERD~Wv~~lk 110 (112)
T PF15406_consen 80 SNKFHFKIK-GHKHTFEAASAAERDNWVAQLK 110 (112)
T ss_pred CceEEEEeC-CceeeeecCCHHHhccHHHHhh
Confidence 355666554 5578999999999999999874
No 127
>PF15404 PH_4: Pleckstrin homology domain
Probab=71.25 E-value=35 Score=35.97 Aligned_cols=34 Identities=24% Similarity=0.218 Sum_probs=25.3
Q ss_pred eeeeeEEEeCCCCcceeEEEEeecCeEEEEecCC
Q psy17173 446 REDTLMKYDGKSNRLTERKVYFFDGVLILCKSNK 479 (1108)
Q Consensus 446 ~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~ 479 (1108)
+.|.|..-..+....+.++++|-.+.||+.+--+
T Consensus 1 ~sG~LY~K~~khs~F~~~~vvL~~G~Li~f~~~~ 34 (185)
T PF15404_consen 1 MSGYLYQKPRKHSTFKKYFVVLIPGFLILFQLFK 34 (185)
T ss_pred CCceeeecCCCCCCceEEEEEEeCCEEEEEEEEe
Confidence 4577776665555567899999999999987643
No 128
>KOG3219|consensus
Probab=70.70 E-value=4.4 Score=42.36 Aligned_cols=64 Identities=8% Similarity=0.134 Sum_probs=55.8
Q ss_pred ccchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCccc-ccccchhhHHh
Q psy17173 114 VISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVD-ISIQDIDVAMY 178 (1108)
Q Consensus 114 ~fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~-itp~~i~~a~~ 178 (1108)
.||-..|.+++ .+..++-|+..+.+.++++-.-...||.|+|-......+... +-|.||.-|++
T Consensus 112 ~f~Ka~iKkL~-~~itg~~v~~nv~Ia~~GiaKvFVGEvVEeAl~V~~~~~e~~PLqP~HIREA~r 176 (195)
T KOG3219|consen 112 AFPKAQIKKLM-SSITGQSVSENVAIAMAGIAKVFVGEVVEEALDVREEWGESGPLQPKHIREAYR 176 (195)
T ss_pred cCCHHHHHHHH-HHHhCCccCcceeeeecchhhHhHHHHHHHHHHHHHHhccCCCCCcHHHHHHHH
Confidence 59999999999 677776799999999999999999999999987776655544 88999999976
No 129
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=67.43 E-value=12 Score=35.81 Aligned_cols=101 Identities=7% Similarity=0.036 Sum_probs=53.0
Q ss_pred eeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCcc-cccccccc-CcceeEEEEEeeccCeEEeecCCCccccccEEe
Q psy17173 447 EDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISV-TVPINVVS-SQYEFKCKEMYFLRKVEINDYENTDDIKNAFEI 524 (1108)
Q Consensus 447 eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~-~~~~~~~~-~~~~y~~k~~i~l~~~~I~d~~d~~~~~~aF~I 524 (1108)
||.|..-..+++.++.+|++|=..-|-++.+.+.+.+ .+.-...- ...-|.-.+ - ...-..+-.+.|.|
T Consensus 3 ~g~LylK~~gkKsWKk~~f~LR~SGLYy~~Kgksk~srdL~cl~~f~~~nvY~~~~------~---kKk~kAPTd~~F~~ 73 (114)
T cd01259 3 EGPLYLKADGKKSWKKYYFVLRSSGLYYFPKEKTKNTRDLACLNLLHGHNVYTGLG------W---RKKYKSPTDYCFGF 73 (114)
T ss_pred cceEEEccCCCccceEEEEEEeCCeeEEccCCCcCCHHHHHHHHhcccCcEEEEec------h---hhccCCCCCceEEE
Confidence 6778766667777778888877666665554433221 11100000 001111110 0 00011122356666
Q ss_pred ecCC------CCeEEEEeCCHHHHHHHHHHHHHHHhhH
Q psy17173 525 APRD------QPSIIIVTKSPEDKKSWFSDLIMVNTKS 556 (1108)
Q Consensus 525 ~~~~------~~~~~l~a~s~eeK~~Wm~~L~~l~~~s 556 (1108)
.+.. ..--.|+|.+++.+..||.+|+-+.-+.
T Consensus 74 K~~~~q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~KyG~ 111 (114)
T cd01259 74 KAVGDQSKGSQSIKYLCAEDLPTLDRWLTAIRIAKYGK 111 (114)
T ss_pred eccccCcccchhheeeccCCHHHHHHHHHHHHHHhhhh
Confidence 5221 1236789999999999999998765443
No 130
>PF04719 TAFII28: hTAFII28-like protein conserved region; InterPro: IPR006809 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. The conserved region is found at the C terminus of most member proteins. The crystal structure of hTAFII28 with hTAFII18 shows that this region is involved in the binding of these two subunits. The conserved region contains four alpha helices and three loops arranged as in histone H3 [, ].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005634 nucleus; PDB: 1BH9_B 1BH8_B.
Probab=66.91 E-value=8.6 Score=35.57 Aligned_cols=63 Identities=8% Similarity=0.174 Sum_probs=46.3
Q ss_pred cchhHHHhhHhhcccc-ccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cccccchhhHHh
Q psy17173 115 ISIDRVQNILQKEFYF-RKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKV-DISIQDIDVAMY 178 (1108)
Q Consensus 115 fpv~~~~~~l~~~~~~-~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~-~itp~~i~~a~~ 178 (1108)
||-..|.+++ +...+ ..++..+.+-++++--....||.|.|-.....-... .|.|.|+.-|.+
T Consensus 24 ~~k~~ikkli-~~~~~~qsv~~~v~i~v~g~aKvFVGEiVE~A~~Vq~~~~~~~pl~P~hlreA~r 88 (90)
T PF04719_consen 24 FNKAAIKKLI-NQVLGNQSVSQNVVIAVAGIAKVFVGEIVEEARDVQEEWGETGPLQPDHLREAYR 88 (90)
T ss_dssp --HHHHHHHH-HHHHS-S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SS--HHHHHHHHH
T ss_pred CCHHHHHHHH-HHHcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Confidence 7888899998 56777 899999999999999999999999998777654433 699999988754
No 131
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=66.75 E-value=13 Score=35.34 Aligned_cols=95 Identities=15% Similarity=0.197 Sum_probs=59.0
Q ss_pred eeeeeeeEEEeCCC-CcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCccccccE
Q psy17173 444 FYREDTLMKYDGKS-NRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNAF 522 (1108)
Q Consensus 444 li~eG~L~k~~~~~-~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~~aF 522 (1108)
-|.+|.+.|.++-- ..|+.||+.||.+=|=+-...... .....+-+. +.++.... -.-...+.+
T Consensus 3 cIvhGyi~KLGGPFls~WQ~Ry~~LfPNRLE~~~~~~~~-----------~~eLi~M~~--i~~V~~e~--~~iK~~~CI 67 (116)
T cd01240 3 CIVHGYIKKLGGPFLSQWQTRYFKLYPNRLELYGESEAN-----------KPELITMDQ--IEDVSVEF--QQIKEENCI 67 (116)
T ss_pred eEEeeehhhhCCHHHHHHHHHHheeCcceeeeccccccc-----------CCcEEEeeh--hhhcchhh--eeeccCceE
Confidence 36788888877632 134689999998877772211111 123332221 11111100 001224678
Q ss_pred EeecCCCCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17173 523 EIAPRDQPSIIIVTKSPEDKKSWFSDLIMVN 553 (1108)
Q Consensus 523 ~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~ 553 (1108)
.|.-+++..+++.+.+.-+=++|...|+..-
T Consensus 68 ~ik~k~~~k~vlt~~d~i~l~qW~~elr~a~ 98 (116)
T cd01240 68 LLKIRDEKKIVLTNSDEIELKQWKKELRDAH 98 (116)
T ss_pred EEEEcCCceEEEecCCcHHHHHHHHHHHHHH
Confidence 8888888899999999999999999998873
No 132
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=66.70 E-value=7.6 Score=45.17 Aligned_cols=53 Identities=8% Similarity=0.301 Sum_probs=48.7
Q ss_pred hccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHh
Q psy17173 126 KEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMY 178 (1108)
Q Consensus 126 ~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~ 178 (1108)
+..-..|++..|+..||..+||-..+|++.|.+.++..+++.++.+||..|++
T Consensus 10 ~~~Gi~~~~~~a~~~La~~~e~~~~~i~~~A~k~~~hskR~~l~~~Di~~Al~ 62 (343)
T cd08050 10 ESLGIDSLSDEVAQLLAEDVEYRLREIIQEAAKFMRHSKRRKLTTSDVNHALR 62 (343)
T ss_pred HHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHH
Confidence 33444799999999999999999999999999999999999999999999985
No 133
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=60.78 E-value=14 Score=34.76 Aligned_cols=92 Identities=12% Similarity=0.195 Sum_probs=51.5
Q ss_pred eeeeeeEEEeC-CCCcceeEEEEeecCe----EEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCc---
Q psy17173 445 YREDTLMKYDG-KSNRLTERKVYFFDGV----LILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTD--- 516 (1108)
Q Consensus 445 i~eG~L~k~~~-~~~~~~er~~FLF~d~----Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~--- 516 (1108)
.++|-|.+.++ .-++++.|++.|= ++ ..+|.-+.+++- =.+.+.|++..|-=.+..+
T Consensus 3 k~sGyL~k~Gg~~~KkWKKRwFvL~-qvsQYtfamcsy~ekks~--------------P~e~~qldGyTvDy~~~~~~~~ 67 (117)
T cd01234 3 KHCGYLYAIGKNVWKKWKKRFFVLV-QVSQYTFAMCSYREKKAE--------------PTEFIQLDGYTVDYMPESDPDP 67 (117)
T ss_pred ceeEEEEeccchhhhhhheeEEEEE-chhHHHHHHHhhhhhcCC--------------chhheeecceEEeccCCCCCCc
Confidence 36788887777 4456667877664 22 122322211110 0123445555552221111
Q ss_pred -------cccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17173 517 -------DIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMV 552 (1108)
Q Consensus 517 -------~~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l 552 (1108)
+-.+-|..+. .+++++|.+..+.|+..|++++-++
T Consensus 68 ~~~~~~~gg~~ff~avk-egd~~~fa~~de~~r~lwvqa~yra 109 (117)
T cd01234 68 NSELSLQGGRHFFNAVK-EGDELKFATDDENERHLWVQAMYRA 109 (117)
T ss_pred ccccccccchhhhheec-cCcEEEEeccchHHHHHHHHHHHHH
Confidence 1234455443 3678999999999999999998654
No 134
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=58.39 E-value=20 Score=31.18 Aligned_cols=62 Identities=15% Similarity=0.281 Sum_probs=44.9
Q ss_pred cchhHHHhhHhhcccc-ccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHh
Q psy17173 115 ISIDRVQNILQKEFYF-RKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMY 178 (1108)
Q Consensus 115 fpv~~~~~~l~~~~~~-~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~ 178 (1108)
||.+-|...- +..+ ..++..++-.||-=+||-.-+|++-|.++.+..++.+.|++||..|++
T Consensus 4 ~~~esvk~iA--es~Gi~~l~de~a~~La~dveyrlreiiq~a~kfm~hskR~~Lt~~Di~~ALr 66 (66)
T PF02969_consen 4 FSQESVKDIA--ESLGISNLSDEAAKALAEDVEYRLREIIQEALKFMRHSKRTKLTTDDINSALR 66 (66)
T ss_dssp --HHHHHHHH--HHTT---B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH-
T ss_pred CCHHHHHHHH--HHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Confidence 4445544333 2233 468889999999999999999999999999999999999999988864
No 135
>PLN00158 histone H2B; Provisional
Probab=56.09 E-value=21 Score=34.34 Aligned_cols=62 Identities=8% Similarity=0.135 Sum_probs=44.5
Q ss_pred hhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHh
Q psy17173 117 IDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMY 178 (1108)
Q Consensus 117 v~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~ 178 (1108)
-..|.+.||+=.-...|+..+.--+...+..+...|-.-|+.-++.+++..|+.++|+.|++
T Consensus 30 ~~YI~kVLKQVhPd~gIS~kaM~ImnSfvnDiferIA~EAs~La~~nkr~TltsrEIqtAvr 91 (116)
T PLN00158 30 KIYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKIATEAGKLARYNKKPTVTSREIQTAVR 91 (116)
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHH
Confidence 34588888644444556666655566666666666666677777888999999999999986
No 136
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=48.41 E-value=1.5e+02 Score=29.91 Aligned_cols=70 Identities=20% Similarity=0.290 Sum_probs=48.2
Q ss_pred ccCHHHHHHHHccCCCCChhH------HHHHHHhccccCCHHHHHHHHHHhcCCCCCCcccccCccchhhhhhHHHHHHH
Q psy17173 609 GATLHKLIERLTYHIYADPAF------IGTFLTTYRSFTTPTELLDLLIDRFNVPDPNKVFENNNADIEESILREDIIRY 682 (1108)
Q Consensus 609 agTL~kLIe~Lt~~~~~D~~f------~~~FLlTyrsFttp~~LL~~Li~Ry~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1108)
.++++++|++.|++...+++. .+..-. .-..|.+.+..|..|.....+
T Consensus 2 ~~~~~~~I~kATs~~l~~~dw~~ileicD~In~---~~~~~k~a~ral~krl~~~n~----------------------- 55 (142)
T cd03569 2 VSEFDELIEKATSELLGEPDLASILEICDMIRS---KDVQPKYAMRALKKRLLSKNP----------------------- 55 (142)
T ss_pred cchHHHHHHHHcCcccCccCHHHHHHHHHHHhC---CCCCHHHHHHHHHHHHcCCCh-----------------------
Confidence 367999999999976544433 222221 245778888888888765322
Q ss_pred hhhccchhhhHHHHHHHHHHhhcccccc
Q psy17173 683 KKELCQPVQFRVLNVFRQWVQHHFYDFQ 710 (1108)
Q Consensus 683 ~~~~~~~vq~rVl~vl~~Wi~~~~~DF~ 710 (1108)
.+|++-+.+|..-++++...|.
T Consensus 56 ------~vql~AL~LLe~~vkNCG~~fh 77 (142)
T cd03569 56 ------NVQLYALLLLESCVKNCGTHFH 77 (142)
T ss_pred ------HHHHHHHHHHHHHHHHCCHHHH
Confidence 2677888999999999877665
No 137
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=48.13 E-value=92 Score=39.34 Aligned_cols=100 Identities=10% Similarity=0.133 Sum_probs=63.7
Q ss_pred ceeeeeeeEEEeCCCCc---ceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCC---c
Q psy17173 443 EFYREDTLMKYDGKSNR---LTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENT---D 516 (1108)
Q Consensus 443 ~li~eG~L~k~~~~~~~---~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~---~ 516 (1108)
...+||-+..++.++-. ...||++|=...+-++|.+.... .--+|.-+-=..+.|.|..-. .
T Consensus 3 ~~~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~~------------~~pirs~~id~~~rVed~Gr~~~~g 70 (719)
T PLN00188 3 KVVYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKPQDN------------QVPIKTLLIDGNCRVEDRGLKTHHG 70 (719)
T ss_pred cceEeeEEEEEcccccccccceeEEEEEecchhhhcccCCccc------------cccceeeccCCCceEeecCceEEcC
Confidence 34578888877775432 14899999999999999875532 111111111123344443211 1
Q ss_pred cccccEEeecCC--CCeEEEEeCCHHHHHHHHHHHHHHHh
Q psy17173 517 DIKNAFEIAPRD--QPSIIIVTKSPEDKKSWFSDLIMVNT 554 (1108)
Q Consensus 517 ~~~~aF~I~~~~--~~~~~l~a~s~eeK~~Wm~~L~~l~~ 554 (1108)
..-+.|.|..+- .+.+++.|.|.||-.+||++|..+..
T Consensus 71 ~~~yvl~~Yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~ 110 (719)
T PLN00188 71 HMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIESVID 110 (719)
T ss_pred ceEEEEEEecCCCccccEEEecCCHHHHHHHHHHHHHHHh
Confidence 234567777544 34799999999999999999988754
No 138
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=46.04 E-value=1.6e+02 Score=29.58 Aligned_cols=72 Identities=13% Similarity=0.171 Sum_probs=47.9
Q ss_pred CHHHHHHHHccCCCCChhHH---HHHHHhccccCCHHHHHHHHHHhcCCCCCCcccccCccchhhhhhHHHHHHHhhhcc
Q psy17173 611 TLHKLIERLTYHIYADPAFI---GTFLTTYRSFTTPTELLDLLIDRFNVPDPNKVFENNNADIEESILREDIIRYKKELC 687 (1108)
Q Consensus 611 TL~kLIe~Lt~~~~~D~~f~---~~FLlTyrsFttp~~LL~~Li~Ry~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1108)
+++++|++.|++...+++.- ++-=+--.....|.+-+..|..|.....+
T Consensus 1 ~~~~~iekAT~~~l~~~dw~~ileicD~In~~~~~~k~a~rai~krl~~~n~---------------------------- 52 (139)
T cd03567 1 SLEAWLNKATNPSNREEDWEAIQAFCEQINKEPEGPQLAVRLLAHKIQSPQE---------------------------- 52 (139)
T ss_pred CHHHHHHHHcCccCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHcCCCH----------------------------
Confidence 48999999999865544321 11111122345677777777777654321
Q ss_pred chhhhHHHHHHHHHHhhccccccc
Q psy17173 688 QPVQFRVLNVFRQWVQHHFYDFQR 711 (1108)
Q Consensus 688 ~~vq~rVl~vl~~Wi~~~~~DF~~ 711 (1108)
.++++-+.+|..=+++|...|..
T Consensus 53 -~v~l~AL~LLe~~vkNCG~~fh~ 75 (139)
T cd03567 53 -KEALQALTVLEACMKNCGERFHS 75 (139)
T ss_pred -HHHHHHHHHHHHHHHHcCHHHHH
Confidence 36788899999999999988863
No 139
>PF15408 PH_7: Pleckstrin homology domain
Probab=45.95 E-value=12 Score=33.67 Aligned_cols=88 Identities=14% Similarity=0.089 Sum_probs=49.6
Q ss_pred eeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEE---eeccCeEEeecCCCcc-ccccE
Q psy17173 447 EDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEM---YFLRKVEINDYENTDD-IKNAF 522 (1108)
Q Consensus 447 eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~---i~l~~~~I~d~~d~~~-~~~aF 522 (1108)
||-|.....+.- +.|.+.|=.+.+++...+.+. -...|.+... +||-+ -.+.+.. --++|
T Consensus 1 EGYLY~~E~~si--~rRF~~L~~K~~~~~~~KGG~----------~L~sF~L~~s~~s~Pm~~----~~~A~~N~Gi~A~ 64 (104)
T PF15408_consen 1 EGYLYRDEDSSI--QRRFVMLRSKQFNMYEDKGGQ----------YLCSFQLSSSVVSHPMVN----FSQAVPNLGINAF 64 (104)
T ss_pred CCeEEEeccchH--HHHHHhhhhceeEEecccCCc----------eeeeeehhhhhhhccccc----ccccCCCCCeeEE
Confidence 355555444432 356777777777776654432 1234444432 12211 1112222 12454
Q ss_pred Ee--ecCCCCeEEEEeCCHHHHHHHHHHHH
Q psy17173 523 EI--APRDQPSIIIVTKSPEDKKSWFSDLI 550 (1108)
Q Consensus 523 ~I--~~~~~~~~~l~a~s~eeK~~Wm~~L~ 550 (1108)
-| .+.++..+.++|.|.+..+.|++++.
T Consensus 65 G~L~~~~~~~~~~~FA~S~~~~~~Wi~~mN 94 (104)
T PF15408_consen 65 GFLMYSPSRRHVQCFASSKKVCQSWIQVMN 94 (104)
T ss_pred EEEEecCCcchhhhhhhHHHHHHHHHHHhc
Confidence 44 46667789999999999999999874
No 140
>smart00428 H3 Histone H3.
Probab=44.56 E-value=44 Score=31.92 Aligned_cols=49 Identities=12% Similarity=0.137 Sum_probs=44.6
Q ss_pred cccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHh
Q psy17173 130 FRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMY 178 (1108)
Q Consensus 130 ~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~ 178 (1108)
..|+.++|..-|-.+.|....++.|-|...+..-++.-|.++|+++|.+
T Consensus 51 ~~R~~~~Al~aLQeasE~ylv~lfeda~~~a~HAkRvTl~~kDi~La~r 99 (105)
T smart00428 51 DLRFQSSAIMALQEAAEAYLVGLFEDTNLLAIHAKRVTIMPKDIQLARR 99 (105)
T ss_pred CceeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCcHhhHHHHHH
Confidence 3699999999999999999999999999999999999999999999854
No 141
>KOG3723|consensus
Probab=44.18 E-value=9.2 Score=45.75 Aligned_cols=96 Identities=20% Similarity=0.242 Sum_probs=60.4
Q ss_pred eeeeeeEEEeCCCC---cceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEee----cCCCcc
Q psy17173 445 YREDTLMKYDGKSN---RLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEIND----YENTDD 517 (1108)
Q Consensus 445 i~eG~L~k~~~~~~---~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d----~~d~~~ 517 (1108)
+-||.|...+++.+ +|+.||+-|=.-.|.+-|..++... . . -.|.++.++-+. ......
T Consensus 736 ~iEGQLKEKKGrWRf~kRW~TrYFTLSgA~L~~~kg~s~~dS--------~-~-----~~IDl~~IRSVk~v~~kr~~rs 801 (851)
T KOG3723|consen 736 LIEGQLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDS--------D-D-----CPIDLSKIRSVKAVAKKRRDRS 801 (851)
T ss_pred hhcchhhhhccchhhhhhhccceEEecchhhhcccCCCCCCC--------C-C-----CCccHHHhhhHHHHHhhhhhcc
Confidence 67888876666543 4578888776666666555443221 0 0 123333322111 112345
Q ss_pred ccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHHhh
Q psy17173 518 IKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVNTK 555 (1108)
Q Consensus 518 ~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~~~ 555 (1108)
+..||+|...|+ ++++.|+++..-++|+..|.-+.+.
T Consensus 802 lpKAFEIFTAD~-T~ILKaKDeKNAEEWlqCL~IavAH 838 (851)
T KOG3723|consen 802 LPKAFEIFTADK-TYILKAKDEKNAEEWLQCLNIAVAH 838 (851)
T ss_pred cchhhheeecCc-eEEeecccccCHHHHHHHHHHHHHH
Confidence 678999998865 5999999999999999988765433
No 142
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=42.89 E-value=2.8e+02 Score=26.82 Aligned_cols=37 Identities=14% Similarity=0.266 Sum_probs=28.9
Q ss_pred cccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHHhhH
Q psy17173 519 KNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVNTKS 556 (1108)
Q Consensus 519 ~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~~~s 556 (1108)
..-|.|... +-.+.|-|.|..+++.|.+.|..+...+
T Consensus 70 ~~yfgL~T~-~G~vEfec~~~~~~k~W~~gI~~mL~~~ 106 (110)
T PF08458_consen 70 RRYFGLKTA-QGVVEFECDSQREYKRWVQGIQHMLSQV 106 (110)
T ss_pred EEEEEEEec-CcEEEEEeCChhhHHHHHHHHHHHHHHh
Confidence 456777766 4479999999999999999997654443
No 143
>PLN02866 phospholipase D
Probab=40.65 E-value=1.1e+02 Score=40.29 Aligned_cols=39 Identities=21% Similarity=0.349 Sum_probs=32.5
Q ss_pred CCccccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17173 514 NTDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVN 553 (1108)
Q Consensus 514 d~~~~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~ 553 (1108)
+..+..++|.|... +.++.|.|+|..+-+.|+.+|....
T Consensus 269 ~~~~~~~~~~i~~~-~r~l~l~~~s~~~~~~w~~ai~~~~ 307 (1068)
T PLN02866 269 ERNPLRFGFKVTCG-NRSIRLRTKSSAKVKDWVAAINDAG 307 (1068)
T ss_pred ccCCCcceEEEecC-ceEEEEEECCHHHHHHHHHHHHHHH
Confidence 44567899999765 5679999999999999999997654
No 144
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=40.10 E-value=52 Score=29.43 Aligned_cols=58 Identities=14% Similarity=0.210 Sum_probs=46.9
Q ss_pred HhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhc
Q psy17173 121 QNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMYA 179 (1108)
Q Consensus 121 ~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~~ 179 (1108)
.+.|+ ..-..+++.+|.--|+-++|-...++.+.|-+++...+++..++.||..|+.+
T Consensus 13 aqil~-~~Gf~~~~~sale~ltdi~~~yl~~l~~~~~~~a~~agR~~~~~~Dv~~Al~~ 70 (77)
T smart00576 13 AQILE-SAGFDSFQESALETLTDILQSYIQELGRTAHSYAELAGRTEPNLGDVVLALEN 70 (77)
T ss_pred HHHHH-HcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 44553 23336888888888888888888899999999999999999999999999764
No 145
>smart00427 H2B Histone H2B.
Probab=39.13 E-value=54 Score=30.31 Aligned_cols=60 Identities=8% Similarity=0.132 Sum_probs=41.6
Q ss_pred HHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHh
Q psy17173 119 RVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMY 178 (1108)
Q Consensus 119 ~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~ 178 (1108)
.|.+.||+=.-.--|+..+.--+...+-.+...|-.-|+.-++..++..|+.++|+.|++
T Consensus 6 Yi~kvLKqVhpd~giS~kam~imnSfvnDiferIa~EAs~L~~~nkr~TltsreIqtAvr 65 (89)
T smart00427 6 YIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASKLARYNKKSTLSSREIQTAVR 65 (89)
T ss_pred HHHHHHHHhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHH
Confidence 366777543333456666655556666666666666677777888999999999999976
No 146
>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]. Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....
Probab=38.32 E-value=37 Score=29.88 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHhcCC----CCcCchHHHHHHHHHHHHHHHhcc
Q psy17173 31 TLVSSLHSILKQVHNS----LDINTDALYYTEKLILKLLNLLCS 70 (1108)
Q Consensus 31 ~~~~~~~~~~~~~~p~----~~~~~~~~~~~~~~~~~~l~~~~~ 70 (1108)
.+..+++|++.+++++ +.+..+|++++.+.+-.++..+..
T Consensus 6 ~~~~~~~r~~r~i~~~~~~~~ris~~a~~~L~~~~E~~~~~il~ 49 (75)
T PF00125_consen 6 IPKFPFSRLLREIGEEILSKYRISSEALVALQSVLEYLLVEILE 49 (75)
T ss_dssp SSHHHHHHHHHHHHHTTSSSSEECHHHHHHHHHHHHHHHHHHHH
T ss_pred cCceEEeeeeehhhcccccccccccccchhhhhhhhhhhhhhhh
Confidence 4456677777777777 999999999999999888887764
No 147
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=36.28 E-value=3.4e+02 Score=26.42 Aligned_cols=67 Identities=16% Similarity=0.244 Sum_probs=42.0
Q ss_pred eeeeeeEEEeCCCCcceeEEEEee-cCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCc-----cc
Q psy17173 445 YREDTLMKYDGKSNRLTERKVYFF-DGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTD-----DI 518 (1108)
Q Consensus 445 i~eG~L~k~~~~~~~~~er~~FLF-~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~-----~~ 518 (1108)
++||-++....+.+.. .||.+.. ++.|-+.+...+ =++...|+|+++.-.....+. .-
T Consensus 1 lkEGWmVHyT~~d~~r-KRhYWrLDsK~Itlf~~e~~---------------skyyKeIPLsEIl~V~~~~~~~~~~~~~ 64 (117)
T cd01239 1 LKEGWMVHYTSSDNRR-KKHYWRLDSKAITLYQEESG---------------SRYYKEIPLAEILSVSSNNGDSVLAKHP 64 (117)
T ss_pred CccceEEEEecCccce-eeeEEEecCCeEEEEEcCCC---------------CeeeEEeehHHheEEeccCCCcCCCCCC
Confidence 4678888777766543 4666666 455555554433 245567899987766543332 34
Q ss_pred cccEEeecC
Q psy17173 519 KNAFEIAPR 527 (1108)
Q Consensus 519 ~~aF~I~~~ 527 (1108)
.|.|+|...
T Consensus 65 ~hcFEi~T~ 73 (117)
T cd01239 65 PHCFEIRTT 73 (117)
T ss_pred CcEEEEEec
Confidence 689999974
No 148
>KOG1657|consensus
Probab=35.26 E-value=36 Score=37.32 Aligned_cols=73 Identities=10% Similarity=0.180 Sum_probs=61.3
Q ss_pred CcccchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhcChhhh
Q psy17173 112 SLVISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMYADKALL 184 (1108)
Q Consensus 112 ~l~fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~~D~eL~ 184 (1108)
...||++||.+.+|..--...|.+.|||-++-.+|+...++=.-|+.++...++.-+.-.|+.-|+.+..-.+
T Consensus 72 ~~~lPlaRiKkimK~dedv~mI~~Eapvl~aka~E~Fi~elt~~sw~~Tee~~rrtl~~sdia~av~~s~~fd 144 (236)
T KOG1657|consen 72 NHILPLARIKKIMKSDEDVSMITAEAPVLFAKACELFITELTLRSWVHTEENKRRTLQKSDIAAAVTQSETFD 144 (236)
T ss_pred hccCcHhhccccccccccccccchhHHHHHHHHHHHHHHHHHHHhhhhhcccccccchHHHHHHHhccCCCcc
Confidence 4679999999999988888899999999999999999888777777888888877777778877777665554
No 149
>KOG3751|consensus
Probab=33.14 E-value=1.5e+02 Score=35.93 Aligned_cols=107 Identities=9% Similarity=0.106 Sum_probs=57.0
Q ss_pred ceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCC-CCccccccccc-cCcceeEEEEEeeccCeEEeecCCCccccc
Q psy17173 443 EFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNK-KISVTVPINVV-SSQYEFKCKEMYFLRKVEINDYENTDDIKN 520 (1108)
Q Consensus 443 ~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~-~~~~~~~~~~~-~~~~~y~~k~~i~l~~~~I~d~~d~~~~~~ 520 (1108)
-.-++|-|.....++|.|+..|+||=..-|-|..+.+ +..+.+.-+.. .+..-|...+-= ....... .+
T Consensus 316 ~pei~GfL~~K~dgkKsWKk~yf~LR~SGLYys~K~tsk~~r~Lq~l~~~~~snVYt~i~~r-------KkyksPT--d~ 386 (622)
T KOG3751|consen 316 PPEIQGFLYLKEDGKKSWKKHYFVLRRSGLYYSTKGTSKEPRHLQCLADLHSSNVYTGIGGR-------KKYKSPT--DY 386 (622)
T ss_pred CccccceeeecccccccceeEEEEEecCcceEccCCCCCCchhhHHHHhcccCceEEeecch-------hccCCCC--Cc
Confidence 3445788887777777777777777655555544333 32222211100 011122221100 0001111 23
Q ss_pred cEEeecCC--C--C-eEEEEeCCHHHHHHHHHHHHHHHhhHHH
Q psy17173 521 AFEIAPRD--Q--P-SIIIVTKSPEDKKSWFSDLIMVNTKSML 558 (1108)
Q Consensus 521 aF~I~~~~--~--~-~~~l~a~s~eeK~~Wm~~L~~l~~~s~l 558 (1108)
+|.|.... + . -=.|+|+.+..+..||.||+-+..+..|
T Consensus 387 ~f~~K~~~~~~~~r~lk~lCAEDe~t~~~WltAiRl~KyG~qL 429 (622)
T KOG3751|consen 387 GFCIKPNKLRNKRRFLKMLCAEDEQTRTCWLTAIRLLKYGMQL 429 (622)
T ss_pred eEEeeeccccCcccceeeeecccchhHHHHHHHHHHHHHHHHH
Confidence 44444221 1 1 2478899999999999999998777764
No 150
>COG5208 HAP5 CCAAT-binding factor, subunit C [Transcription]
Probab=31.90 E-value=77 Score=33.51 Aligned_cols=75 Identities=9% Similarity=0.173 Sum_probs=58.6
Q ss_pred cccchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhcChhhhhhh
Q psy17173 113 LVISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMYADKALLELF 187 (1108)
Q Consensus 113 l~fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~~D~eL~~l~ 187 (1108)
+..|..||.+.+|-+---.-|++.|||..|-+.|-..+|+-=-|--.++.+++...--.+|.-|+...+..+=|+
T Consensus 108 h~LPlARIkkvMKtdedVkMisaEaPvlFak~~EiFI~ELTmRAW~~ae~NkRRtLQksDia~Av~kSeMfDFLi 182 (286)
T COG5208 108 HNLPLARIKKVMKTDEDVKMISAEAPVLFAKITEIFIEELTMRAWINAEENKRRTLQKSDIAAAVKKSEMFDFLI 182 (286)
T ss_pred ccCcHHHHHHHHhcccchhheecccchHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHhHHh
Confidence 468999999999866555679999999999999988887766666666666766666778888888766655444
No 151
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=29.85 E-value=3.3e+02 Score=27.51 Aligned_cols=70 Identities=19% Similarity=0.256 Sum_probs=45.7
Q ss_pred HHHHHHHHccCCCCChhHH--HHHHHhc-cccCCHHHHHHHHHHhcCCCCCCcccccCccchhhhhhHHHHHHHhhhccc
Q psy17173 612 LHKLIERLTYHIYADPAFI--GTFLTTY-RSFTTPTELLDLLIDRFNVPDPNKVFENNNADIEESILREDIIRYKKELCQ 688 (1108)
Q Consensus 612 L~kLIe~Lt~~~~~D~~f~--~~FLlTy-rsFttp~~LL~~Li~Ry~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (1108)
++++|++.|++....++.- --+-=.- ..-..|.+.+..|..|.....|
T Consensus 1 ~e~~iekATse~l~~~dw~~il~icD~I~~~~~~~k~a~ral~KRl~~~n~----------------------------- 51 (144)
T cd03568 1 FDDLVEKATDEKLTSENWGLILDVCDKVKSDENGAKDCLKAIMKRLNHKDP----------------------------- 51 (144)
T ss_pred ChHHHHHHcCccCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHHcCCCH-----------------------------
Confidence 4789999998865444331 1111111 1246788888888888765322
Q ss_pred hhhhHHHHHHHHHHhhcccccc
Q psy17173 689 PVQFRVLNVFRQWVQHHFYDFQ 710 (1108)
Q Consensus 689 ~vq~rVl~vl~~Wi~~~~~DF~ 710 (1108)
.+|++-+.+|..=+++|...|.
T Consensus 52 ~v~l~AL~LLe~~vkNCG~~fh 73 (144)
T cd03568 52 NVQLRALTLLDACAENCGKRFH 73 (144)
T ss_pred HHHHHHHHHHHHHHHHCCHHHH
Confidence 2667888899999999887775
No 152
>PF15630 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 4DRB_H 3V9R_C.
Probab=29.15 E-value=66 Score=28.87 Aligned_cols=69 Identities=16% Similarity=0.224 Sum_probs=38.1
Q ss_pred CCcccchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHH---HHHHhcCcccccccchhhHHhcChhh
Q psy17173 111 SSLVISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVG---NYVKNIRKVDISIQDIDVAMYADKAL 183 (1108)
Q Consensus 111 ~~l~fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelag---n~~~~~~~~~itp~~i~~a~~~D~eL 183 (1108)
|.|.|.|++|-.-- .....+ .-.+-|++|+-|-.-.-+-.+|. -+++.-++..|+++|+.+..+.++.|
T Consensus 5 aal~~~v~ki~ee~---~~~~~~-~~s~~~i~al~ELv~~q~~~~a~DLe~FAkHA~R~tI~~dDV~Ll~Rrn~~L 76 (76)
T PF15630_consen 5 AALWYTVGKIVEEE---AKEKGV-EVSPQFIAALTELVYKQLENLAKDLEAFAKHAGRSTINMDDVKLLARRNPSL 76 (76)
T ss_dssp HHHHHHHHHHHHHC---CCCTTS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHTTT-HHH
T ss_pred HHHHHHHHHHHHHH---HhccCC-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHHHhhcCCCC
Confidence 44556677665332 111111 13456677776654443333332 35667788889999999999887765
No 153
>PTZ00463 histone H2B; Provisional
Probab=29.09 E-value=94 Score=30.09 Aligned_cols=60 Identities=12% Similarity=0.097 Sum_probs=39.2
Q ss_pred HHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHh
Q psy17173 119 RVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMY 178 (1108)
Q Consensus 119 ~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~ 178 (1108)
.|.+.||+=.-..-|+..+.--|...+.=+...|-.-|+.-++..++.-||.++|+.|++
T Consensus 33 YI~KVLKqVhPd~gIS~kaM~ImnSfvnDifErIA~EAs~La~~nkr~TltsrEIQtAvr 92 (117)
T PTZ00463 33 YIFKVLKQVHPDTGISRKSMNIMNSFLVDTFEKIATEASRLCKYTRRDTLSSREIQTAIR 92 (117)
T ss_pred HHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHh
Confidence 477888644333456555544444444444444555566666778899999999999986
No 154
>KOG1739|consensus
Probab=28.55 E-value=85 Score=37.38 Aligned_cols=95 Identities=22% Similarity=0.306 Sum_probs=66.8
Q ss_pred ceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCccccccE
Q psy17173 443 EFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNAF 522 (1108)
Q Consensus 443 ~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~~aF 522 (1108)
.+=+-|.|.++..---.+++||+.|=++.|.+.+.... ..|-+++.|.+..-.|.-.+ ...+.|
T Consensus 23 w~e~~G~lskwtnyi~gwqdRyv~lk~g~Lsyykse~E-------------~~hGcRgsi~l~ka~i~ahE---fDe~rf 86 (611)
T KOG1739|consen 23 WVERCGVLSKWTNYIHGWQDRYVVLKNGALSYYKSEDE-------------TEHGCRGSICLSKAVITAHE---FDECRF 86 (611)
T ss_pred chhhcceeeeeecccccccceEEEEcccchhhhhhhhh-------------hhcccceeeEeccCCccccc---chhhee
Confidence 34455777776642222368999999999888876543 26777888887776664433 334788
Q ss_pred EeecCCCCeEEEEeCCHHHHHHHHHHHHHHHh
Q psy17173 523 EIAPRDQPSIIIVTKSPEDKKSWFSDLIMVNT 554 (1108)
Q Consensus 523 ~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~~ 554 (1108)
-|... ...+.+.+...+.++.|+++|.....
T Consensus 87 dIsvn-~nv~~lra~~~~hr~~w~d~L~wmk~ 117 (611)
T KOG1739|consen 87 DISVN-DNVWYLRAQDPDHRQQWIDALEWMKT 117 (611)
T ss_pred eeEec-cceeeehhcCcHHHHHHHHHHHHHhh
Confidence 88876 44677889999999999999966543
No 155
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=27.03 E-value=4.1e+02 Score=26.31 Aligned_cols=70 Identities=19% Similarity=0.261 Sum_probs=46.2
Q ss_pred HHHHHHHHccCCCCChhHHHH--HHHh-ccccCCHHHHHHHHHHhcCCCCCCcccccCccchhhhhhHHHHHHHhhhccc
Q psy17173 612 LHKLIERLTYHIYADPAFIGT--FLTT-YRSFTTPTELLDLLIDRFNVPDPNKVFENNNADIEESILREDIIRYKKELCQ 688 (1108)
Q Consensus 612 L~kLIe~Lt~~~~~D~~f~~~--FLlT-yrsFttp~~LL~~Li~Ry~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (1108)
++++|++.|++...+++.--+ +-=. =..=..|.+.+..|..|+..+.|
T Consensus 1 ~~~~i~kATs~~l~~~dw~~~l~icD~i~~~~~~~k~a~r~l~krl~~~n~----------------------------- 51 (133)
T smart00288 1 VERLIDKATSPSLLEEDWELILEICDLINSTPDGPKDAVRLLKKRLNNKNP----------------------------- 51 (133)
T ss_pred ChhHHHHHcCcCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCH-----------------------------
Confidence 368999999876554433211 1111 11236788888888888875432
Q ss_pred hhhhHHHHHHHHHHhhcccccc
Q psy17173 689 PVQFRVLNVFRQWVQHHFYDFQ 710 (1108)
Q Consensus 689 ~vq~rVl~vl~~Wi~~~~~DF~ 710 (1108)
.+|++-+.++..=+.++...|.
T Consensus 52 ~v~l~AL~lLe~~vkNcg~~f~ 73 (133)
T smart00288 52 HVALLALTLLDACVKNCGSKFH 73 (133)
T ss_pred HHHHHHHHHHHHHHHHCCHHHH
Confidence 2667889999999999887775
No 156
>KOG1924|consensus
Probab=26.25 E-value=1.5e+02 Score=37.55 Aligned_cols=14 Identities=36% Similarity=0.586 Sum_probs=6.0
Q ss_pred ccchhhhHhHHHHH
Q psy17173 930 IPFFGMYLTNILHI 943 (1108)
Q Consensus 930 IPflGv~L~DL~~i 943 (1108)
=||+=.+|+.++.|
T Consensus 401 E~yfLSILQhllli 414 (1102)
T KOG1924|consen 401 EPYFLSILQHLLLI 414 (1102)
T ss_pred cchHHHHHHHHHHH
Confidence 34444444444444
No 157
>cd07978 TAF13 The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Several hy
Probab=23.13 E-value=92 Score=29.04 Aligned_cols=37 Identities=16% Similarity=0.369 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhcChh
Q psy17173 144 VLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMYADKA 182 (1108)
Q Consensus 144 vleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~~D~e 182 (1108)
|.+||+ +++--|.+.|. .+..+++++|+.-++++|+.
T Consensus 33 v~~~i~-~l~~~a~~~A~-~r~~k~~~eD~~FliR~D~~ 69 (92)
T cd07978 33 VVEYII-ELCHKAAEVAQ-RRRGKVKVEDLIFLLRKDPK 69 (92)
T ss_pred HHHHHH-HHHHHHHHHHH-cCCCCCCHHHHHHHHhcCHH
Confidence 345554 44455555555 56777899999999999854
No 158
>KOG1585|consensus
Probab=22.31 E-value=1.4e+02 Score=32.98 Aligned_cols=39 Identities=21% Similarity=0.192 Sum_probs=30.1
Q ss_pred hHhhccccccccCCchH---HHHHHHHHHHHHHHHHHHHHHH
Q psy17173 123 ILQKEFYFRKVETNMVL---YYAAVLDYVAADLLKLVGNYVK 161 (1108)
Q Consensus 123 ~l~~~~~~~r~~~~~~v---y~~avleyl~~~vlelagn~~~ 161 (1108)
+||.+...-.+.+...+ |+++||=||.++-...|-.-.+
T Consensus 173 ~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r 214 (308)
T KOG1585|consen 173 FLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYR 214 (308)
T ss_pred HHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 46667777777777777 8999999999888877755444
No 159
>KOG0869|consensus
Probab=22.12 E-value=1.6e+02 Score=30.00 Aligned_cols=63 Identities=16% Similarity=0.191 Sum_probs=42.5
Q ss_pred cchhHHHhhHhhcccc-ccccCCchHH-HHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHh
Q psy17173 115 ISIDRVQNILQKEFYF-RKVETNMVLY-YAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMY 178 (1108)
Q Consensus 115 fpv~~~~~~l~~~~~~-~r~~~~~~vy-~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~ 178 (1108)
.|+..|.|.+|+..-+ .+|+-.|-=. =.-|=||++. |---|..-++.-+++.|+-+||.|||.
T Consensus 33 LPIANV~RIMK~~lP~naKIsKDAKE~vQECVSEfISF-vT~EAsekC~~EkRKTIngdDllwAm~ 97 (168)
T KOG0869|consen 33 LPIANVSRIMKKALPANAKISKDAKETVQECVSEFISF-VTGEASEKCQREKRKTINGDDLLWAMS 97 (168)
T ss_pred ccHHHHHHHHHhcCCcccccchHHHHHHHHHHHHHHHH-HhhHHHHHHHHHhcCcccHHHHHHHHH
Confidence 7999999999876665 6787666522 2334454432 222244555666788899999999976
No 160
>KOG0932|consensus
Probab=21.59 E-value=1e+02 Score=37.38 Aligned_cols=34 Identities=18% Similarity=0.375 Sum_probs=30.5
Q ss_pred cccccEEeecCCCCeEEEEeCCHHHHHHHHHHHH
Q psy17173 517 DIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLI 550 (1108)
Q Consensus 517 ~~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~ 550 (1108)
.-.|.|++...+...|.|+|.|.+|.+.|+..|.
T Consensus 581 KKp~Vf~lrtAdwrv~LFQaps~eEmqsWi~rIN 614 (774)
T KOG0932|consen 581 KKPHVFKLRTADWRVFLFQAPSQEEMQSWIERIN 614 (774)
T ss_pred cCCceEEEEeccceeEEEeCCCHHHHHHHHHHHH
Confidence 3468999999888899999999999999999884
No 161
>KOG0705|consensus
Probab=20.51 E-value=97 Score=37.77 Aligned_cols=40 Identities=15% Similarity=0.278 Sum_probs=33.8
Q ss_pred ccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHHhhHHHH
Q psy17173 520 NAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVNTKSMLE 559 (1108)
Q Consensus 520 ~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~~~s~l~ 559 (1108)
..|+|++.-+-.+.|.|-+.|||..|+++|......+++.
T Consensus 446 e~F~IVs~tgqtWhFeAtt~EERdaWvQai~sqIlaSlq~ 485 (749)
T KOG0705|consen 446 ECFEIVSNTGQTWHFEATTYEERDAWVQAIQSQILASLQS 485 (749)
T ss_pred ceEEEeccccchhhhhhcchhhHHHHHHHHHHHHHHHHhh
Confidence 4899998777789999999999999999998766666543
Done!