Query psy17173
Match_columns 1108
No_of_seqs 570 out of 2622
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 23:46:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17173.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17173hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ksy_A SOS-1, SON of sevenless 100.0 3E-194 1E-198 1863.0 84.4 1025 11-1050 2-1048(1049)
2 2ii0_A SOS-1, SON of sevenless 100.0 1.9E-91 6.5E-96 837.2 42.4 479 570-1050 3-489 (490)
3 4f7z_A RAP guanine nucleotide 100.0 8E-66 2.7E-70 670.5 35.4 392 605-1022 486-999 (999)
4 3cf6_E RAP guanine nucleotide 100.0 2.9E-55 9.8E-60 544.6 33.5 391 606-1022 182-694 (694)
5 2ije_S Guanine nucleotide-rele 100.0 7.1E-56 2.4E-60 482.0 24.2 235 781-1022 3-239 (240)
6 1dbh_A Protein (human SOS 1); 100.0 8.6E-55 2.9E-59 502.9 31.3 343 208-559 2-354 (354)
7 3qxl_A RAS-specific guanine nu 100.0 4E-54 1.4E-58 474.6 23.1 243 775-1020 24-271 (271)
8 2dfk_A Collybistin II; DH doma 100.0 2.6E-51 8.9E-56 481.1 36.3 333 208-572 40-381 (402)
9 2pz1_A RHO guanine nucleotide 100.0 8.5E-51 2.9E-55 486.4 34.6 336 208-575 117-461 (466)
10 2z0q_A XPLN, RHO guanine nucle 100.0 8.8E-48 3E-52 442.9 27.5 308 208-553 18-345 (346)
11 2vrw_B P95VAV, VAV1, proto-onc 100.0 1.1E-46 3.7E-51 443.1 33.8 306 208-555 24-336 (406)
12 1xcg_A PDZ-rhogef, RHO guanine 100.0 7.6E-47 2.6E-51 438.8 31.4 322 208-554 20-366 (368)
13 3t06_A PDZ-rhogef, RHO guanine 100.0 1E-45 3.6E-50 436.5 33.1 323 208-554 62-408 (418)
14 3mpx_A FYVE, rhogef and PH dom 100.0 4.2E-46 1.4E-50 442.1 29.6 309 208-556 21-339 (434)
15 1foe_A T-lymphoma invasion and 100.0 3E-45 1E-49 426.7 34.0 327 208-559 10-371 (377)
16 3p6a_A RHO guanine nucleotide 100.0 4.3E-45 1.5E-49 425.5 32.8 320 208-554 26-371 (377)
17 1txd_A RHO guanine nucleotide 100.0 3.5E-45 1.2E-49 427.3 29.1 326 208-558 23-373 (385)
18 3odw_A RHO guanine nucleotide 100.0 2.9E-44 1E-48 434.7 32.7 318 208-553 179-523 (536)
19 3ky9_A Proto-oncogene VAV; cal 100.0 3.1E-44 1.1E-48 440.5 30.3 306 208-555 196-508 (587)
20 1kz7_A Guanine nucleotide exch 100.0 1.9E-43 6.4E-48 407.6 34.4 302 208-558 10-329 (353)
21 2rgn_B RHOA/RAC/CDC42 exchange 100.0 1.4E-42 4.9E-47 400.4 30.8 296 209-555 12-319 (354)
22 1nty_A Triple functional domai 100.0 3.8E-42 1.3E-46 390.0 33.0 292 208-555 8-309 (311)
23 3jzy_A Intersectin 2; C2 domai 100.0 2.5E-44 8.7E-49 435.5 0.0 321 208-556 26-364 (510)
24 1by1_A Protein (PIX); RHO-GTPa 100.0 1.7E-33 5.7E-38 300.7 16.6 179 209-396 13-193 (209)
25 3jv3_A Intersectin-1; SH3 doma 100.0 1.3E-32 4.4E-37 307.6 17.1 198 208-427 81-283 (283)
26 2jss_A Chimera of histone H2B. 100.0 4.4E-32 1.5E-36 281.8 14.9 158 31-188 4-180 (192)
27 1id3_C Histone H2A.1; nucleoso 99.9 5.1E-24 1.7E-28 205.5 7.6 91 102-192 13-103 (131)
28 1f66_C Histone H2A.Z; nucleoso 99.9 2E-24 6.8E-29 207.5 4.2 87 102-188 15-102 (128)
29 2f8n_G Core histone macro-H2A. 99.9 3E-24 1E-28 204.2 5.0 88 105-192 13-100 (120)
30 2nqb_C Histone H2A; nucleosome 99.9 3.5E-24 1.2E-28 204.6 4.5 89 104-192 13-101 (123)
31 2f8n_K Histone H2A type 1; nuc 99.9 5.8E-24 2E-28 207.7 4.7 91 102-192 32-122 (149)
32 1tzy_A Histone H2A-IV; histone 99.9 7.9E-24 2.7E-28 203.6 5.1 88 105-192 16-103 (129)
33 1v61_A RAC/CDC42 guanine nucle 99.7 2.1E-17 7.3E-22 160.5 11.2 117 424-553 9-125 (132)
34 2lg1_A A-kinase anchor protein 99.7 2.2E-17 7.4E-22 171.6 5.5 151 369-555 2-173 (185)
35 3t6a_A Breast cancer anti-estr 99.6 2.3E-15 7.7E-20 163.7 10.5 244 779-1024 44-322 (333)
36 3t6g_A SH2 domain-containing p 99.6 2.9E-15 9.9E-20 162.7 10.3 155 779-937 45-213 (331)
37 1jfi_A Transcription regulator 99.5 5.8E-15 2E-19 136.3 5.5 82 106-187 3-84 (98)
38 1zc3_B Exocyst complex protein 99.5 1.5E-13 5E-18 131.0 14.9 104 439-554 3-107 (113)
39 3qwm_A Iqsec1, IQ motif and SE 99.3 1.5E-11 5E-16 119.5 12.5 111 437-557 6-125 (140)
40 1fho_A UNC-89; pleckstrin homo 99.1 5.7E-11 1.9E-15 113.6 5.9 102 442-556 8-114 (119)
41 1n1j_B NF-YC; histone-like PAI 99.1 1.3E-10 4.5E-15 107.1 7.0 77 111-187 16-92 (97)
42 4g92_C HAPE; transcription fac 99.0 1.9E-10 6.4E-15 110.0 6.4 74 112-185 39-112 (119)
43 1f1e_A Histone fold protein; a 98.7 1E-07 3.4E-12 94.3 12.0 139 33-180 7-147 (154)
44 2byk_A Chrac-16; nucleosome sl 98.6 2.5E-08 8.4E-13 97.5 4.1 83 105-187 10-93 (140)
45 2yfw_B Histone H4, H4; cell cy 98.5 1.1E-07 3.8E-12 88.5 5.9 70 107-179 24-93 (103)
46 1tzy_D Histone H4-VI; histone- 98.5 1.1E-07 3.8E-12 88.5 5.5 71 107-180 24-94 (103)
47 2i5f_A Pleckstrin; PH domain, 98.4 2.3E-06 7.8E-11 80.1 13.4 96 442-552 5-107 (109)
48 1u5d_A SKAP55, SRC kinase-asso 98.3 4.7E-06 1.6E-10 77.6 12.7 97 443-554 2-105 (108)
49 1pls_A Pleckstrin homology dom 98.3 5.4E-06 1.9E-10 78.3 12.7 97 443-554 4-101 (113)
50 1v89_A Hypothetical protein KI 98.2 9E-06 3.1E-10 77.0 12.9 97 442-553 6-111 (118)
51 1x05_A Pleckstrin; PH domain, 98.2 8.7E-06 3E-10 78.8 12.4 96 442-552 16-118 (129)
52 2d9y_A Pleckstrin homology dom 98.2 1.2E-05 4.3E-10 76.1 13.2 97 441-552 8-107 (117)
53 2dn6_A KIAA0640 protein; PH do 98.2 1.6E-05 5.3E-10 75.2 13.5 97 442-554 6-103 (115)
54 1wgq_A FYVE, rhogef and PH dom 98.2 1.2E-05 4E-10 75.5 12.2 95 443-552 7-101 (109)
55 2dkp_A Pleckstrin homology dom 98.2 1.3E-05 4.5E-10 77.3 12.5 97 441-552 18-117 (128)
56 4a6h_A Phosphatidylinositol 4, 98.1 1.3E-05 4.5E-10 76.9 11.6 97 444-552 6-116 (120)
57 1upq_A PEPP1; PH domain, phosp 98.1 2.4E-05 8.4E-10 74.8 13.4 98 442-554 9-109 (123)
58 1fao_A Dual adaptor of phospho 98.1 1.4E-05 4.8E-10 77.0 11.7 98 442-555 16-113 (126)
59 1fgy_A GRP1; PH domain, signal 98.1 2.3E-05 7.9E-10 75.3 13.2 96 443-554 4-120 (127)
60 2yry_A Pleckstrin homology dom 98.1 2.4E-05 8.2E-10 74.8 13.0 97 441-552 19-118 (122)
61 1x1g_A Pleckstrin 2; PH domain 98.1 5.9E-06 2E-10 80.0 8.2 99 441-553 15-123 (129)
62 3rcp_A Pleckstrin homology dom 98.1 1.1E-05 3.9E-10 74.7 9.7 91 446-552 1-91 (103)
63 1btk_A Bruton'S tyrosine kinas 98.1 3.6E-05 1.2E-09 78.5 13.6 99 443-553 2-131 (169)
64 1u5f_A SRC-associated adaptor 98.0 4.1E-05 1.4E-09 76.1 13.5 98 442-554 15-119 (148)
65 2cod_A Centaurin-delta 1; ARF 98.0 2.9E-05 9.8E-10 73.5 11.7 93 441-553 5-98 (115)
66 2lul_A Tyrosine-protein kinase 98.0 2.3E-05 7.8E-10 79.6 11.1 96 442-552 13-119 (164)
67 2rsg_A Collagen type IV alpha- 98.0 1.5E-05 5.2E-10 72.6 8.5 91 445-552 2-92 (94)
68 2d9x_A Oxysterol binding prote 98.0 2.8E-05 9.5E-10 74.4 10.0 99 443-557 7-107 (120)
69 1wg7_A Dedicator of cytokinesi 97.9 3.3E-05 1.1E-09 76.8 10.5 101 441-556 15-126 (150)
70 1eaz_A Tandem PH domain contai 97.9 3.5E-05 1.2E-09 73.8 10.3 98 441-554 11-111 (125)
71 2d9v_A Pleckstrin homology dom 97.9 5.4E-05 1.9E-09 73.6 11.7 97 442-553 6-113 (130)
72 1v5u_A SBF1, SET binding facto 97.9 5.8E-05 2E-09 71.4 11.5 95 442-552 6-109 (117)
73 1wi1_A Calcium-dependent activ 97.9 6E-05 2.1E-09 72.2 11.3 93 443-551 7-107 (126)
74 3aj4_A Pleckstrin homology dom 97.9 4.8E-05 1.7E-09 71.5 10.5 97 443-554 4-111 (112)
75 2cof_A Protein KIAA1914; PH do 97.9 5.1E-05 1.8E-09 70.9 10.2 94 442-552 6-99 (107)
76 1v88_A Oxysterol binding prote 97.9 7.9E-05 2.7E-09 72.5 11.7 96 442-554 6-124 (130)
77 3cxb_B Pleckstrin homology dom 97.9 9.6E-05 3.3E-09 69.9 11.8 93 446-553 2-100 (112)
78 1x1f_A Signal-transducing adap 97.9 0.00011 3.8E-09 73.2 12.7 94 443-552 17-111 (149)
79 1dyn_A Dynamin; signal transdu 97.8 0.00013 4.3E-09 69.3 12.1 93 444-551 12-114 (125)
80 2p0d_A RHO GTPase-activating p 97.8 0.00012 4.1E-09 71.1 12.5 108 443-554 11-124 (129)
81 2w2x_D 1-phosphatidylinositol- 97.8 7.6E-05 2.6E-09 72.0 10.6 105 443-553 11-118 (124)
82 1unq_A RAC-alpha serine/threon 97.8 3.7E-05 1.3E-09 73.9 8.2 100 442-556 6-112 (125)
83 2rlo_A Centaurin-gamma 1; spli 97.8 0.00025 8.5E-09 68.5 13.9 113 443-556 3-126 (128)
84 4gou_A EHRGS-rhogef; RGS domai 97.8 0.0069 2.4E-07 63.1 25.1 174 209-396 187-373 (518)
85 2da0_A 130-kDa phosphatidylino 97.7 0.00028 9.6E-09 66.7 12.8 94 442-555 8-102 (114)
86 1btn_A Beta-spectrin; signal t 97.7 9.7E-05 3.3E-09 68.5 9.0 97 446-551 1-105 (106)
87 2dhk_A TBC1 domain family memb 97.7 0.00029 1E-08 67.1 12.4 93 443-553 7-103 (119)
88 1wjm_A Beta-spectrin III; PH d 97.7 0.00011 3.9E-09 70.3 8.8 103 443-554 7-117 (123)
89 1u5e_A SRC-associated adaptor 97.6 0.00039 1.3E-08 73.4 13.1 98 442-554 104-208 (211)
90 2nqb_D Histone H2B; nucleosome 97.6 6.1E-05 2.1E-09 70.5 5.8 77 30-106 33-118 (123)
91 1tzy_B Histone H2B; histone-fo 97.6 6.3E-05 2.1E-09 70.8 5.8 77 30-106 36-121 (126)
92 2dtc_A RAL guanine nucleotide 97.6 0.00062 2.1E-08 65.5 12.3 97 446-551 3-109 (126)
93 2r09_A Cytohesin-3; autoinhibi 97.5 0.00071 2.4E-08 77.0 14.2 104 443-562 212-336 (347)
94 1ku5_A HPHA, archaeal histon; 97.5 9.5E-05 3.3E-09 63.7 5.3 65 114-179 6-70 (70)
95 2fjl_A 1-phosphatidylinositol- 97.5 0.00088 3E-08 65.9 12.7 109 445-553 2-147 (150)
96 3a8p_A T-lymphoma invasion and 97.5 0.00035 1.2E-08 76.3 10.8 105 442-555 9-125 (263)
97 2q13_A DCC-interacting protein 97.5 0.0015 5E-08 75.5 16.1 95 443-554 277-375 (385)
98 2j59_M RHO-GTPase activating p 97.4 0.00056 1.9E-08 69.3 11.1 97 443-553 2-110 (168)
99 4h8s_A DCC-interacting protein 97.4 0.0029 9.9E-08 73.6 18.2 96 441-553 298-397 (407)
100 2coc_A FYVE, rhogef and PH dom 97.4 0.00032 1.1E-08 66.3 8.1 91 445-552 9-104 (112)
101 3pp2_A RHO GTPase-activating p 97.4 0.0013 4.4E-08 63.2 12.3 107 443-553 7-122 (124)
102 1v5p_A Pleckstrin homology dom 97.4 0.0012 4.1E-08 63.7 11.6 101 441-552 12-118 (126)
103 2y7b_A Actin-binding protein a 97.3 0.00036 1.2E-08 67.7 7.4 100 443-554 4-128 (134)
104 3tfm_A Myosin X; split PH doma 97.3 0.00084 2.9E-08 71.8 10.6 96 442-555 56-156 (228)
105 1dro_A Beta-spectrin; cytoskel 97.2 0.00049 1.7E-08 65.9 7.2 104 443-553 7-118 (122)
106 3lju_X ARF-GAP with dual PH do 97.1 0.0011 3.7E-08 76.5 10.2 98 442-555 267-373 (386)
107 1b67_A Protein (histone HMFA); 97.1 0.00055 1.9E-08 58.6 5.4 64 114-178 2-65 (68)
108 1qqg_A IRS-1, insulin receptor 97.0 0.0018 6.1E-08 70.7 9.4 101 441-556 7-114 (264)
109 3tca_A Amyloid beta A4 precurs 96.9 0.0037 1.3E-07 69.0 11.1 102 445-558 169-280 (291)
110 3hk0_A Growth factor receptor- 96.7 0.0083 2.8E-07 64.8 12.1 103 445-559 133-245 (256)
111 4gmv_A RAS-associated and plec 96.4 0.014 5E-07 63.7 11.4 101 446-558 160-270 (281)
112 3lju_X ARF-GAP with dual PH do 96.3 0.011 3.8E-07 68.1 10.4 99 443-556 145-248 (386)
113 2rov_A RHO-associated protein 96.1 0.01 3.6E-07 56.3 7.1 95 446-552 3-113 (117)
114 2d9w_A Docking protein 2; PH d 95.8 0.076 2.6E-06 50.3 11.6 98 442-552 10-119 (127)
115 2ys3_A UNC-112-related protein 95.3 0.024 8.3E-07 54.7 6.4 95 448-555 13-113 (137)
116 1f1e_A Histone fold protein; a 95.3 0.016 5.4E-07 57.3 5.2 64 114-177 4-67 (154)
117 3a8n_A TIAM-1, T-lymphoma inva 94.9 0.03 1E-06 61.1 6.4 103 443-554 10-124 (279)
118 4ejn_A RAC-alpha serine/threon 94.6 0.063 2.2E-06 62.8 8.9 95 443-553 5-107 (446)
119 2hue_C Histone H4; mini beta s 94.6 0.048 1.6E-06 48.5 5.9 64 115-179 11-74 (84)
120 4f7h_A Fermitin family homolog 94.1 0.091 3.1E-06 52.1 7.2 84 462-557 67-153 (173)
121 1taf_B TFIID TBP associated fa 94.1 0.067 2.3E-06 45.6 5.4 64 114-178 6-69 (70)
122 3b0c_W CENP-W, centromere prot 94.0 0.083 2.8E-06 46.0 6.0 65 114-178 4-68 (76)
123 1id3_B Histone H4; nucleosome 93.9 0.081 2.8E-06 48.7 6.1 65 114-179 28-92 (102)
124 1n1j_A NF-YB; histone-like PAI 93.8 0.073 2.5E-06 48.3 5.5 67 112-178 6-73 (93)
125 4bbk_A Kindlin-1, fermitin fam 93.1 0.15 5.2E-06 49.9 6.7 83 462-556 46-131 (165)
126 1w1g_A HPDK1, 3-phosphoinositi 92.5 2.1 7.3E-05 41.9 13.9 107 422-555 33-140 (151)
127 1taf_A TFIID TBP associated fa 92.3 0.18 6.1E-06 42.8 5.2 61 118-179 5-65 (68)
128 1mai_A Phospholipase C delta-1 92.0 0.56 1.9E-05 45.1 9.3 99 444-555 12-122 (131)
129 2byk_B Chrac-14; nucleosome sl 90.4 0.22 7.5E-06 47.8 4.4 68 112-179 7-75 (128)
130 3v9r_A MHF1, uncharacterized p 90.1 0.24 8.3E-06 44.3 4.1 78 110-189 11-89 (90)
131 3b0c_T CENP-T, centromere prot 89.5 0.28 9.7E-06 45.8 4.3 68 113-181 6-73 (111)
132 4dra_A Centromere protein S; D 88.0 0.21 7.2E-06 46.4 2.2 77 110-187 26-102 (113)
133 3b0b_B CENP-S, centromere prot 87.5 0.32 1.1E-05 45.0 3.1 77 110-187 18-94 (107)
134 1v5m_A SH2 and PH domain-conta 84.5 4.1 0.00014 38.8 9.0 37 517-553 93-129 (136)
135 1tzy_B Histone H2B; histone-fo 82.6 1.5 5.1E-05 41.4 5.2 68 110-178 33-100 (126)
136 3vh5_A CENP-S; histone fold, c 81.5 0.91 3.1E-05 43.7 3.4 77 110-187 18-94 (140)
137 1jfi_B DR1 protein, transcript 80.3 2 6.9E-05 43.3 5.6 71 108-178 9-79 (179)
138 2nqb_D Histone H2B; nucleosome 78.0 2.9 9.8E-05 39.3 5.4 66 112-178 32-97 (123)
139 3b0c_W CENP-W, centromere prot 73.9 3.2 0.00011 35.8 4.4 38 33-70 7-44 (76)
140 3nqj_A Histone H3-like centrom 70.9 5.5 0.00019 34.9 5.1 49 130-178 25-73 (82)
141 1bh9_B TAFII28; histone fold, 70.2 5.1 0.00017 35.7 4.8 64 114-178 16-80 (89)
142 2hue_B Histone H3; mini beta s 68.7 6.3 0.00022 34.1 4.9 49 130-178 23-71 (77)
143 2ly8_A Budding yeast chaperone 66.9 51 0.0017 31.0 11.1 102 31-178 6-110 (121)
144 2jss_A Chimera of histone H2B. 64.2 6.6 0.00023 40.2 5.0 61 118-178 7-67 (192)
145 3a58_A Exocyst complex compone 64.1 1.6E+02 0.0054 31.9 15.5 82 461-557 135-221 (320)
146 2d9z_A Protein kinase C, NU ty 63.5 87 0.003 29.7 12.0 96 442-553 6-122 (129)
147 3r45_A Histone H3-like centrom 62.8 7.4 0.00025 38.0 4.7 69 110-178 73-147 (156)
148 3nqu_A Histone H3-like centrom 59.6 9.4 0.00032 36.8 4.8 69 110-178 57-131 (140)
149 2yfv_A Histone H3-like centrom 58.3 10 0.00035 34.5 4.5 69 110-178 23-98 (100)
150 2adz_A Alpha-1-syntrophin; pro 54.4 25 0.00086 35.4 7.1 52 501-552 122-175 (178)
151 1tzy_C Histone H3; histone-fol 53.4 15 0.00051 35.3 5.1 68 111-178 59-130 (136)
152 2l5a_A Histone H3-like centrom 49.9 11 0.00036 39.5 3.6 56 122-178 169-224 (235)
153 3hie_A Protein PSL1, exocyst c 49.3 64 0.0022 32.1 9.0 58 494-555 92-149 (171)
154 3tfm_A Myosin X; split PH doma 49.1 25 0.00086 36.7 6.6 48 502-550 178-225 (228)
155 2coa_A Protein kinase C, D2 ty 48.0 75 0.0026 30.0 8.8 94 442-552 6-117 (125)
156 1z87_A Alpha-1-syntrophin; pro 42.8 49 0.0017 35.5 7.7 52 501-552 207-260 (263)
157 3a98_B Engulfment and cell mot 33.1 1.4E+02 0.0049 30.5 9.0 33 520-552 116-148 (203)
158 3g2s_A C-terminal fragment of 31.9 1.4E+02 0.0048 29.0 8.4 73 609-710 9-84 (149)
159 1x5b_A Signal transducing adap 30.3 1.3E+02 0.0043 29.7 7.8 79 603-710 7-88 (163)
160 4dra_E Centromere protein X; D 28.0 76 0.0026 27.8 5.0 65 109-173 7-73 (84)
161 3zyq_A Hepatocyte growth facto 25.0 1.3E+02 0.0045 31.3 7.2 70 609-710 6-81 (226)
162 1mhq_A ADP-ribosylation factor 24.0 1.7E+02 0.0058 28.3 7.3 68 611-710 1-74 (148)
163 1k6k_A ATP-dependent CLP prote 23.6 47 0.0016 31.5 3.3 39 149-187 6-44 (143)
164 3zvr_A Dynamin-1; hydrolase, D 22.1 1.2E+03 0.04 28.8 18.9 91 444-549 540-640 (772)
165 1khy_A CLPB protein; alpha hel 21.2 50 0.0017 31.4 2.9 32 150-181 11-42 (148)
166 3fes_A ATP-dependent CLP endop 20.2 37 0.0013 32.5 1.7 32 149-180 12-43 (145)
No 1
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=100.00 E-value=2.9e-194 Score=1863.05 Aligned_cols=1025 Identities=46% Similarity=0.802 Sum_probs=915.1
Q ss_pred ccccCCcccccccccccchhhhHHHHHHHHHHhcCCCCcCchHHHHHHHHHHHHHHHhccCCCCCChhhHHHHHHhhCCC
Q psy17173 11 ADFNDNCDFHEAYNENRWKGTLVSSLHSILKQVHNSLDINTDALYYTEKLILKLLNLLCSKPLPLTTSDMEGKIKKYFPN 90 (1108)
Q Consensus 11 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~f~~ 90 (1108)
++++.+|||+++||++||+|+|+++||||++||||+|+|++|||+|||+||++||++||+ ++|+||+|||++|+++||+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 80 (1049)
T 3ksy_A 2 QAQQLPYEFFSEENAPKWRGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNMLCQ-AQPRSASDVEERVQKSFPH 80 (1049)
T ss_dssp ----CCCCSSCSSCCTTSSSSSHHHHHHHHHHHCTTSBCCHHHHHHHHHHHHHHHHHHHH-TCCCSHHHHHHHHHHHSCT
T ss_pred CCcccCCCccchhhHHHHHHHHHHHHHHHHHHhCCCCCccHhHHHHHHHHHHHHHHHHhc-CCCccHHHHHHHHHHhCCC
Confidence 456788999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred CCchhhHHHHHHHHHcCCCCCCcccchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc
Q psy17173 91 PISEWTFNEAKQALEKGKKKSSLVISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISI 170 (1108)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~r~~l~fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp 170 (1108)
|||+||+++|++++.++|+||||+||||||||+| +|+|++|||++||||+|||||||||||||||||+++++++.+|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~pv~~~~~~l-~~~~~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p 159 (1049)
T 3ksy_A 81 PIDKWAIADAQSAIEKRKRRNPLSLPVEKIHPLL-KEVLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITK 159 (1049)
T ss_dssp THHHHHHHHHHHHHTTCCCSSSCSSCHHHHHHHH-HHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCH
T ss_pred chHHHHHHHHHHhhhcccccCCccccHHHHHHHh-hcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecC
Confidence 9999999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred cchhhHHhcChhhhhhhccCCCCCC-----cCCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q psy17173 171 QDIDVAMYADKALLELFFQEDDDPV-----YLEPQVQSNNVVLHYEQVVNDFVAEEKLFIRELKLILKIFYEELNKITPL 245 (1108)
Q Consensus 171 ~~i~~a~~~D~eL~~l~~~d~~~~~-----~~~~~~~~~~~~~sy~evi~ELi~TEr~Yv~~L~~ii~~f~~pl~~~~~l 245 (1108)
+|+++|+++|++|+++|++++++.. .++|. ..++ ++|++||+||++||++||++|+.++++|+.||.....+
T Consensus 160 ~~~~~ai~~d~eL~~l~~~dee~~~~lp~~~~~~~-~~~~--~~~revI~ELi~TE~~YV~~L~~l~~~y~~pL~~~~~~ 236 (1049)
T 3ksy_A 160 QDIKVAMCADKVLMDMFHQDVEDINILSLTDEEPS-TSGE--QTYYDLVKAFMAEIRQYIRELNLIIKVFREPFVSNSKL 236 (1049)
T ss_dssp HHHHHHHHHCSSHHHHCC------------------CCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHCTTT
T ss_pred ccccccccCCHHHHHHHhhccccccCCCCccccCc-ccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccC
Confidence 9999999999999999988865431 12222 2244 89999999999999999999999999999999987666
Q ss_pred CCHHhHhhhccCHHHHHHHHHHHHHHHHHhhccCCC---CCcchhHHHhhhhcccchhHHHHHhhhccHHHHHHHHHHhc
Q psy17173 246 KEIKEVHSLFEIIEEIYNLTVCLLGAVEDISEMSSD---DHCIGSCFEEFAEDAEFDVYEKLLHNIVNQKSIEVLSMHVT 322 (1108)
Q Consensus 246 ~~~~~i~~IFsNIeeI~~~~~~fL~~Le~~~~~~~~---~~~IG~~F~~~a~~~~f~~Y~~Yc~N~~~~~a~~~l~~l~~ 322 (1108)
.++++++.|||||++|+++|+.||.+|+++++.++. .+.||+||+++++...|++|..||+||.++.+...+.++.+
T Consensus 237 l~~~~~~~IF~Ni~~I~~~h~~fL~~Le~~~~~~~~~~~~~~IgdiFl~~~~~~~F~~Y~~Yc~ny~~~~a~~~l~~l~~ 316 (1049)
T 3ksy_A 237 FSANDVENIFSRIVDIHELSVKLLGHIEDTVEMTDEGSPHPLVGSCFEDLAEELAFDPYESYARDILRPGFHDRFLSQLS 316 (1049)
T ss_dssp SCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHCCSSSSSCCCHHHHHHHHHTTTTSHHHHHHHHHHCTTHHHHHHTTSS
T ss_pred CCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhccccCCchhhHHHHHHHHHHHhhhhHHHHHHHhhccHHHHHHHHHHhc
Confidence 677999999999999999999999999999997754 47899999999877789999999999766799999999999
Q ss_pred ChhhHHHHHHhcccccccccccccccccccccchHhHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhhh---hhh
Q psy17173 323 QPSILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYIKIFHSLTDSSKDKECLEQAQGLLAPLQISLSKI---SLE 399 (1108)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~L~slLi~PvQRI~rY~LLLkeLlK~Tp~~hD~~~L~~A~~~~~~v~~~ine~---~~~ 399 (1108)
++++..+++..|++++.+.+++|++||++|||||+||+|||++|+|+||+..||++|++|++.|++++..||+. ...
T Consensus 317 ~~~f~~fl~~~~~~~~~~~~l~L~s~LikPvQRI~rY~LLL~~LlK~Tp~~~D~~~L~~Al~~i~~v~~~VNe~~~~~~~ 396 (1049)
T 3ksy_A 317 KPGAALYLQSIGEGFKEAVQYVLPRLLLAPVYHCLHYFELLKQLEEKSEDQEDKECLKQAITALLNVQSGMEKICSKSLA 396 (1049)
T ss_dssp STTHHHHHHHHCTTHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTHHHHHHHHHHTTSTTH
T ss_pred ChHHHHHHHHHHhhhhhhhcCChHHHHHHHHHHHhHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999988999999999999999999999999999999999999984449999999999999999999983 233
Q ss_pred hcCccccc-c--hhhhhhhHHHHHHHHHHHhhccCCCcccccccccceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEe
Q psy17173 400 KNGKNACV-R--NYNRVKHLQSLEKIHELKKNVDGVDVRDLRPYLEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCK 476 (1108)
Q Consensus 400 k~~~~~~~-~--~~e~~rk~~~~~kl~eiq~~I~g~~~~~l~~~~r~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k 476 (1108)
|++.++.. + .++.+|+.++++++.++|..|+||+|.++..++|+||++|.+.+.+++ ++||+|||||+||+||
T Consensus 397 k~r~~e~~~~~~~n~~kr~~e~~~~l~~lq~~i~~~~~~~l~~~~r~Li~eG~l~~~~~k----~~r~~FLF~D~Ll~~K 472 (1049)
T 3ksy_A 397 KRRLSESACRFYSQQMKGKQLAIKKMNEIQKNIDGWEGKDIGQCCNEFIMEGTLTRVGAK----HERHIFLFDGLMICCK 472 (1049)
T ss_dssp HHHHHHHC-------------CCSHHHHHHHTSSSCCSSCGGGTCSCCCCEEEEEETTCS----SCEEEEEETTEEEEEE
T ss_pred hhccchhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCccccccccceEEEeceEEEEccC----ceEEEEeeCCeEEEEE
Confidence 33221100 1 234567888889999999999999999999999999999999987644 4999999999999999
Q ss_pred cCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCccccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHHhhH
Q psy17173 477 SNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVNTKS 556 (1108)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~~~s 556 (1108)
+++.++. ..+.++..|.+++.+++.++.|.+.+|+++.+|+|+|.+.++.+|+|+|+|+++|+.||++|.++++++
T Consensus 473 ~~~~~~~----~~g~~~~~y~~k~~i~L~~l~V~~~~d~~~~~~~F~I~~~~~~~~~L~A~S~eeK~~Wi~~I~~~q~k~ 548 (1049)
T 3ksy_A 473 SNHGQPR----LPGASNAEYRLKEKFFMRKVQINDKDDTNEYKHAFEIILKDENSVIFSAKSAEEKNNWMAALISLQYRS 548 (1049)
T ss_dssp CCTTCCC----CTTSCCCSCCCCCEECCSSCCCCCCCCSSSCCSEEEECCTTSCCEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred ecCccCC----CCCCCCCceEEEEEEEcCceEEEECCCCccccceEEEEcCCCCEEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 9865332 223345689999999999999999999999999999998877799999999999999999999999999
Q ss_pred HHHHhhhhhcccccccCcCcCCCCCCCCcCCCCCCCceEEecc--cCCCcccccccCHHHHHHHHccCCCCChhHHHHHH
Q psy17173 557 MLERTLDSIILDEEKKHPLRMPSPEYYSFAEPDSCENIILEEK--QNTNMPLIKGATLHKLIERLTYHIYADPAFIGTFL 634 (1108)
Q Consensus 557 ~l~~~lds~l~~eek~~pL~lp~p~~~~~~epds~~~I~fe~~--~~~~~~~IkagTL~kLIe~Lt~~~~~D~~f~~~FL 634 (1108)
++++++++.+.++++.+|+++|+|..|.|++||++++|+|++. +.+|++.|+||||++||++||++.+.|+.|+.+||
T Consensus 549 ~~~r~~~s~~~~~ek~~~l~~p~~~~~~f~~~d~~~~i~~~~~~~~~~~~~~IkagTL~~LVe~Lt~~~~~D~~f~~~FL 628 (1049)
T 3ksy_A 549 TLERMLDVTMLQEEKEEQMRLPSADVYRFAEPDSEENIIFEENMQPKAGIPIIKAGTVIKLIERLTYHMYADPNFVRTFL 628 (1049)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCCTTTCGGGSCCCTTTEEECSSSCSSCCSCCEEEECHHHHHHHHTCSSCCCHHHHHHHH
T ss_pred HHHHHhhhhhhccccccccCCCCccccccccCCCCcceEEeccCCCCCCcceeeccCHHHHHHHHccccCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999985 55789999999999999999999999999999999
Q ss_pred HhccccCCHHHHHHHHHHhcCCCCCCcccccCc-cchhhhhhHHHHHHHhhhccchhhhHHHHHHHHHHhhcccccccCH
Q psy17173 635 TTYRSFTTPTELLDLLIDRFNVPDPNKVFENNN-ADIEESILREDIIRYKKELCQPVQFRVLNVFRQWVQHHFYDFQRDQ 713 (1108)
Q Consensus 635 lTyrsFttp~~LL~~Li~Ry~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vq~rVl~vl~~Wi~~~~~DF~~d~ 713 (1108)
+|||+||||.+||++|++||+.+.|.....+.. ...|+++..++|++|++.+.++||.||+++|+.|+++||+||..|+
T Consensus 629 lTyRsF~tp~elL~lLi~Ry~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ir~rV~~vLk~Wle~~~~DF~~d~ 708 (1049)
T 3ksy_A 629 TTYRSFCKPQELLSLIIERFEIPEPEPTEADRIAIENGDQPLSAELKRFRKEYIQPVQLRVLNVCRHWVEHHFYDFERDA 708 (1049)
T ss_dssp HSCTTTSCHHHHHHHHHHHHCCCCCCCCHHHHHHTTSSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCH
T ss_pred HHhhccCCHHHHHHHHHHHhccCCCccchhhhhhccccccchhHHHHHHHHhhccchhhhHHHHHHHHHHhCcccccCCH
Confidence 999999999999999999999987753221110 0122333457888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhhhhhh--hhhhcccCCCCCCccccccCCCC-ccccccccCHHHHHHH
Q psy17173 714 NLLEKLKSFLLNEISGKSLRKWADIVLNLIQRKELDLE--KEITFAFNNSPPPIEVHVPINSI-DEFNILIAHPVEIARQ 790 (1108)
Q Consensus 714 ~ll~~L~~Fl~~~v~~~~~~k~~~~l~~~l~r~~~~~~--~~~~~~~~~~pp~i~~~~~~p~~-~~~~ll~~~p~eiA~Q 790 (1108)
.++..|.+|+.. +.++.+++++.++.+.++++..... ......+..+||++.+....++. ..++|++++|.+||+|
T Consensus 709 ~Ll~~L~~Fl~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~pp~~~~~~~~~~~~~~~~ll~~~~~elA~Q 787 (1049)
T 3ksy_A 709 YLLQRMEEFIGT-VRGKAMKKWVESITKIIQRKKIARDNGPGHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQ 787 (1049)
T ss_dssp HHHHHHHHHHHH-CCCTTHHHHHHHHHHHHHHHHHHHCC---CCCCCCSCCCCCCCCSSCTTCTTTCCTTTSCHHHHHHH
T ss_pred HHHHHHHHHHHH-hccchHHHHHHHHHHHHHHHhhccccCccccccCCCCCCchhhcccCccccCCcccccCCHHHHHHH
Confidence 999999999994 7788889999999998887654322 12234566677777777655543 6789999999999999
Q ss_pred HhHHHHHHhcCCChhhhhcccccCCCCCCCCchHHHHHHHHhhHhhHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhcCC
Q psy17173 791 LTLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNN 870 (1108)
Q Consensus 791 LTl~e~~lf~~I~~~Ell~~~w~k~~~~~~~pni~~~i~~fn~ls~wv~~~IL~~~~~~~Ra~~i~kfI~vA~~~~~l~N 870 (1108)
||++|+++|++|.|.||++++|+++++...+||+.+++.+||.+++||+++||.+.++++||++|++||+||.+|+++||
T Consensus 788 LTlid~~lf~~I~p~E~l~~~w~~~~~~~~~pn~~~~i~~~n~~s~wV~~~Il~~~~~~~Ra~~i~~fI~iA~~c~~l~N 867 (1049)
T 3ksy_A 788 LTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNN 867 (1049)
T ss_dssp HHHHHHHHHHHCCGGGGSSSTTTSSCHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHhcCCCcccCCchHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999988777799999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhcccccccchhhhhcCChHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcccchhhhHhHHHHHHhcCCCC
Q psy17173 871 FNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDARELNGDHFKKYQEKLRNINPPCIPFFGMYLTNILHIEEGNPDF 950 (1108)
Q Consensus 871 Fns~~aI~sgL~s~~I~RLk~Tw~~l~~~~~k~l~~l~~l~~~n~~~yR~~l~~~~~p~IPflGv~L~DL~~i~egnp~~ 950 (1108)
|||+|||++||++++|+|||+||+.|+++.++.|+++..++++||++||..++++++|||||+|+||+||+|+++|||++
T Consensus 868 fnsl~aIisgL~s~~I~RLk~TW~~v~~~~~~~~~~l~~l~~~n~~~yR~~l~~~~~p~IPflg~~L~DL~~i~eg~p~~ 947 (1049)
T 3ksy_A 868 FNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEV 947 (1049)
T ss_dssp HHHHHHHHHHHHSHHHHTCTTTTTSSCHHHHHHHHHHHTTTHHHHHHHHHHHTTCCSSCCCCTHHHHHHHHHHHHHSCSE
T ss_pred HHHHHHHHHHcccchhHhHHHHHHHCCHHHHHHHHHHHhhchHHHHHHHHHHhhCCCCccceeHHHHHHHHHHHccCCcc
Confidence 99999999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred CCC--CCcccHHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHhcCCCCCCCchhhHHHHHHHhhhccCCCCCCCCCC
Q psy17173 951 LPD--SKLINFTKRRKVAEIISEIQQYQNEPYCLSVVPIYREFFENLSPFEGIDDNEMCNILFEQSLLIEPRHATHVPKF 1028 (1108)
Q Consensus 951 ~~~--~~lINf~K~r~i~~ii~~i~~~Q~~~Y~~~~~~~i~~~l~~l~~~~~~~e~e~~d~ly~~Sl~iEPr~~~~~~~~ 1028 (1108)
+++ +|+|||+|+++++++|.+|++||+.+|+|.+++.|++||.+++++..++|++++|++|++|+++|||+++.+|++
T Consensus 948 ~~~~~~~lINf~K~~~~~~ii~~i~~~Q~~~Y~~~~~~~i~~~l~~l~~~~~~~e~~~~d~ly~lSl~~EPr~~~~~~~~ 1027 (1049)
T 3ksy_A 948 LKRHGKELINFSKRRKVAEITGEIQQYQNQPYCLRVESDIKRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRNPKPLPRF 1027 (1049)
T ss_dssp EEETTEEEEEHHHHHHHHHHHHHHHTTTSSCCCCCCCHHHHHHHHSCCTTTTSCHHHHHHHHHHHHHHHSCCSSSCCCCC
T ss_pred ccCCCCCeEcHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHhcccccccCchhhHHHHHHHHHHhCCCCCCCCCCC
Confidence 863 479999999999999999999999999999999999999998888888998889999999999999999999999
Q ss_pred CCCCCCCccCCCCccccCCCcc
Q psy17173 1029 PRKWPNISLKSPLVKIKKTRVL 1050 (1108)
Q Consensus 1029 ~~k~~~~~~~~~~~~~~~~~~~ 1050 (1108)
|||+ ..++||||++|.++|..
T Consensus 1028 ~~~~-~~~~~~~~~~~~~~~~~ 1048 (1049)
T 3ksy_A 1028 PKKY-SYPLKSPGVRPSNPRPG 1048 (1049)
T ss_dssp CCCC-CSCCCCCCSCCCCC---
T ss_pred Cccc-cccCCCCCCCCcccCCC
Confidence 9997 89999999999988743
No 2
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S* 1nvw_S* 1nvx_S* 1bkd_S
Probab=100.00 E-value=1.9e-91 Score=837.15 Aligned_cols=479 Identities=53% Similarity=0.933 Sum_probs=419.3
Q ss_pred cccCcCcCCCCCCCCcCCCCCCCceEEeccc--CCCcccccccCHHHHHHHHccCCCCChhHHHHHHHhccccCCHHHHH
Q psy17173 570 EKKHPLRMPSPEYYSFAEPDSCENIILEEKQ--NTNMPLIKGATLHKLIERLTYHIYADPAFIGTFLTTYRSFTTPTELL 647 (1108)
Q Consensus 570 ek~~pL~lp~p~~~~~~epds~~~I~fe~~~--~~~~~~IkagTL~kLIe~Lt~~~~~D~~f~~~FLlTyrsFttp~~LL 647 (1108)
.+++|+.+|+|+.|+|++||+++||+|+++. ..|++.|+||||++||++||++.+.|+.|+.+||+|||+||||.+||
T Consensus 3 ~~~~~~~~p~~~~~~f~~~D~~~~ii~~~~~~~~~g~~~IkagTL~~LVe~Lt~~~~~D~~f~~~FLlTyRsF~tp~eLL 82 (490)
T 2ii0_A 3 MAEEQMRLPSADVYRFAEPDSEENIIFEENMQPKAGIPIIKAGTVIKLIERLTYHMYADPNFVRTFLTTYRSFCKPQELL 82 (490)
T ss_dssp ----CCCCCCTTTCGGGSCCCTTTEEEC-------CCCCEEEECHHHHHHHHTCSSSCCHHHHHHHHHHGGGTSCHHHHH
T ss_pred ccccCCCCCCccccCCCCCCCCCCeEEecCCCCcCCCceeeecCHHHHHHHHccCCCCCHHHHHHHHHHHHhhCCHHHHH
Confidence 5789999999999999999999999998853 24899999999999999999998999999999999999999999999
Q ss_pred HHHHHhcCCCCCCcccccCcc-chhhhhhHHHHHHHhhhccchhhhHHHHHHHHHHhhcccccccCHHHHHHHHHHHhhh
Q psy17173 648 DLLIDRFNVPDPNKVFENNNA-DIEESILREDIIRYKKELCQPVQFRVLNVFRQWVQHHFYDFQRDQNLLEKLKSFLLNE 726 (1108)
Q Consensus 648 ~~Li~Ry~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~vq~rVl~vl~~Wi~~~~~DF~~d~~ll~~L~~Fl~~~ 726 (1108)
++|++||+.+.+.....+..+ ..|+++...++++|++++..++|.||++||+.||++||+||+.|+.+++.|.+|++ .
T Consensus 83 ~~Li~Ry~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~iq~rV~~vl~~Wv~~~~~DF~~d~~ll~~L~~F~~-~ 161 (490)
T 2ii0_A 83 SLIIERFEIPEPEPTEADRIAIENGDQPLSAELKRFRKEYIQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIG-T 161 (490)
T ss_dssp HHHHHHHCCCCCCCCHHHHHHHHTTCSCCCHHHHHHHHHTHHHHHHHHHHHHHHHHHHCTHHHHHCHHHHHHHHHHHT-T
T ss_pred HHHHHHHhccCCCchhhhhhhhccCCccchHHHHHHHHhhhhhHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHH-h
Confidence 999999999876543211100 01122234567888888889999999999999999999999999999999999999 4
Q ss_pred ccCchhHHHHHHHHHHHHHhhhhhh--hhhhcccCCCCCCccccccCCCC-ccccccccCHHHHHHHHhHHHHHHhcCCC
Q psy17173 727 ISGKSLRKWADIVLNLIQRKELDLE--KEITFAFNNSPPPIEVHVPINSI-DEFNILIAHPVEIARQLTLLEFDYFRSVK 803 (1108)
Q Consensus 727 v~~~~~~k~~~~l~~~l~r~~~~~~--~~~~~~~~~~pp~i~~~~~~p~~-~~~~ll~~~p~eiA~QLTl~e~~lf~~I~ 803 (1108)
+.++.++++++.+.++++++..... ......+..+||++.|.+..++. ..+++++++|.|||+|||++|+++|++|.
T Consensus 162 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ll~~~p~elA~QLTlid~~lf~~I~ 241 (490)
T 2ii0_A 162 VRGKAMKKWVESITKIIQRKKIARDNGPGHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESDLYRAVQ 241 (490)
T ss_dssp CCCTTTHHHHHHHHHHHHHHHHC----------CCSCCCCCCCCSSCTTCGGGCCTTTSCHHHHHHHHHHHHHHHHHHCC
T ss_pred ccchhHHHHHHHHHHHHHHHHhcccCCCCcccccCCCCCccccccCCCCCcccchhhccCHHHHHHHHHHHHHHHHHCCC
Confidence 6777889999999888887653221 22234466677788877765654 57889999999999999999999999999
Q ss_pred hhhhhcccccCCCCCCCCchHHHHHHHHhhHhhHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHhhcc
Q psy17173 804 PSELVGSVWTKKNKAEYSPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGS 883 (1108)
Q Consensus 804 ~~Ell~~~w~k~~~~~~~pni~~~i~~fn~ls~wv~~~IL~~~~~~~Ra~~i~kfI~vA~~~~~l~NFns~~aI~sgL~s 883 (1108)
|.||++++|+++++...+||+.+++.+||.+++||+.+||.+.++++||++|++||+||.+|+++|||||+|||++||++
T Consensus 242 ~~E~l~~~w~~~~~~~~~pnl~~~i~~~n~ls~wV~~~Il~~~~~~~Ra~~i~kfI~iA~~c~~l~Nfnsl~AIisgL~s 321 (490)
T 2ii0_A 242 PSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNS 321 (490)
T ss_dssp GGGTGGGGGGSTTHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHTS
T ss_pred HHHHHHHHhcCCCcCCCCccHHHHHHHHhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcc
Confidence 99999999999877667999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhhhcCChHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcccchhhhHhHHHHHHhcCCCCCCCCC--cccHHH
Q psy17173 884 AAVYRLRFTFQALPTRLQKVLEDARELNGDHFKKYQEKLRNINPPCIPFFGMYLTNILHIEEGNPDFLPDSK--LINFTK 961 (1108)
Q Consensus 884 ~~I~RLk~Tw~~l~~~~~k~l~~l~~l~~~n~~~yR~~l~~~~~p~IPflGv~L~DL~~i~egnp~~~~~~~--lINf~K 961 (1108)
++|+||++||+.|+.+.++.|+++..++++||++||..++++++|||||||+||+||+|+++|||++++++| +|||.|
T Consensus 322 ~~I~RLk~TW~~v~~~~~~~~~~l~~l~~~n~~~yR~~l~~~~~p~IPflg~~L~DL~~i~egnp~~~~~~~~~lINf~K 401 (490)
T 2ii0_A 322 SPVYRLDHTFEQIPSRQKKILEEAHELSEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSK 401 (490)
T ss_dssp HHHHTCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSCBCCCHHHHHHHHHHHHTSCSEEEETTEEEEEHHH
T ss_pred chhhhHHHHHHHCCHHHHHHHHHHHHhchHHHHHHHHHHhccCCCcccCcHHHHHHHHHHHhcCCcccCCCCCeEEcHHH
Confidence 999999999999999999999999998889999999999999999999999999999999999999997543 999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHhcCCCCCCCchhhHHHHHHHhhhccCCCCCCCCCCCCCCCCCccCCCC
Q psy17173 962 RRKVAEIISEIQQYQNEPYCLSVVPIYREFFENLSPFEGIDDNEMCNILFEQSLLIEPRHATHVPKFPRKWPNISLKSPL 1041 (1108)
Q Consensus 962 ~r~i~~ii~~i~~~Q~~~Y~~~~~~~i~~~l~~l~~~~~~~e~e~~d~ly~~Sl~iEPr~~~~~~~~~~k~~~~~~~~~~ 1041 (1108)
+++++++|.+|++||+.+|+|.++++|++||.+++++.+++|++++|++|++|+++|||+++++|++|+| +++++||||
T Consensus 402 ~r~~~~ii~~i~~~Q~~~Y~~~~~~~i~~~l~~l~~~~~~~e~~~ed~ly~~Sl~~EPr~~~~~~~~~~~-~~~~~~~~g 480 (490)
T 2ii0_A 402 RRKVAEITGEIQQYQNQPYCLRVESDIKRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRNPKPLPRFPKK-YSYPLKSPG 480 (490)
T ss_dssp HHHHHHHHHHHGGGSSCCCSCCCCHHHHHHHHTCCTTTTSCHHHHHHHHHHHHHHHSCCTTSCCCCCCCC-CCSCCCCCC
T ss_pred HHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHhccccccCchhhhHHHHHHHHHhhCCCCCCCCCCCCCC-CCCcCCCCC
Confidence 9999999999999999999999999999999999888778888888999999999999999999999998 679999999
Q ss_pred ccccCCCcc
Q psy17173 1042 VKIKKTRVL 1050 (1108)
Q Consensus 1042 ~~~~~~~~~ 1050 (1108)
|+|++.+.+
T Consensus 481 ~~~~~~~~~ 489 (490)
T 2ii0_A 481 VRPSNPRPG 489 (490)
T ss_dssp SSCCCC---
T ss_pred CCCCCCCCC
Confidence 999877643
No 3
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=100.00 E-value=8e-66 Score=670.47 Aligned_cols=392 Identities=19% Similarity=0.342 Sum_probs=315.8
Q ss_pred ccccccCHHHHHHHHccCCCCC-------hhHHHHHHHhccccCCHHHHHHHHHHhcCCCCCCcccccCccchhhhhhHH
Q psy17173 605 PLIKGATLHKLIERLTYHIYAD-------PAFIGTFLTTYRSFTTPTELLDLLIDRFNVPDPNKVFENNNADIEESILRE 677 (1108)
Q Consensus 605 ~~IkagTL~kLIe~Lt~~~~~D-------~~f~~~FLlTyrsFttp~~LL~~Li~Ry~~~~~~~~~~~~~~~~~~~~~~~ 677 (1108)
.+|+|||+++||++|+.+...| ..|+++||+|||+|+||.+|+++|++||..+.+.... .. ...
T Consensus 486 ~~v~~gT~ekLie~L~~~~~~~~~~~~~~~~f~~~FLlTyr~F~t~~~ll~~Li~r~~~~~~~~~~-------~~--~~~ 556 (999)
T 4f7z_A 486 YTVMSGTPEKILEHFLETIRLEPSLNEATDSVLNDFVMMHCVFMPNTQLCPALVAHYHAQPSQGTE-------QE--RMD 556 (999)
T ss_dssp CEEEEECHHHHHHHHHHHCCCCTTSHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCSSSCH-------HH--HHH
T ss_pred eEEeecCHHHHHHHHhcccccCcccccchhhHHHHHHHhccccCCcHHHHHHHHHHHcCCCCcccc-------hh--hhh
Confidence 5899999999999999754333 3599999999999999999999999999987664311 00 012
Q ss_pred HHHHHhhhccchhhhHHHHHHHHHHhhcccccccCHHHHHHHHHHHhhhccCc----hhHHHHHHHHHHHHHhhhhhh--
Q psy17173 678 DIIRYKKELCQPVQFRVLNVFRQWVQHHFYDFQRDQNLLEKLKSFLLNEISGK----SLRKWADIVLNLIQRKELDLE-- 751 (1108)
Q Consensus 678 ~~~~~~~~~~~~vq~rVl~vl~~Wi~~~~~DF~~d~~ll~~L~~Fl~~~v~~~----~~~k~~~~l~~~l~r~~~~~~-- 751 (1108)
.| .++|.||+++++.|++.||+||..|+.+...|..|........ .++.....+.+++.+......
T Consensus 557 ~~--------~~~~~rv~~vl~~Wv~~~~~df~~d~~~~~~l~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 628 (999)
T 4f7z_A 557 YA--------LNNKRRVIRLVLQWAAMYGDLLQEDDVAMAFLEEFYVSVSDDARMMAAFKEQLPELEKIVKQISEDAKAP 628 (999)
T ss_dssp HH--------HHHHHHHHHHHHHHHHHHGGGGGGCHHHHHHHHHHHHHHHHCSSCCHHHHTHHHHHHHHHHHTTSCSCCC
T ss_pred HH--------HHHHHHHHHHHHHHHHhCCchhccCHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhhhcccccccc
Confidence 22 3578899999999999999999999999999999987422111 122222223332222110000
Q ss_pred -h-----------------------------------------------------------hhhcc--------------
Q psy17173 752 -K-----------------------------------------------------------EITFA-------------- 757 (1108)
Q Consensus 752 -~-----------------------------------------------------------~~~~~-------------- 757 (1108)
+ ....+
T Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 708 (999)
T 4f7z_A 629 QKKHKVLLQQFNTGDERAQKRQPIRGSDEVLFKVYCIDHTYTTIRVPVAASVKEVISAVADKLGSGEGLIIVKMNSGGEK 708 (999)
T ss_dssp CEECC-----------CCCCCCCCCTTSEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCSCEEEEEECTTCCE
T ss_pred ccccchhhhccccccccccccCCCCCccchhhhccccccccccccCCccccHHHHHHhhhhhccCCCcceeeccccCCcc
Confidence 0 00000
Q ss_pred ---------------------------cCCCCCCccccccCCCCccccccccCHHHHHHHHhHHHHHHhcCCChhhhhcc
Q psy17173 758 ---------------------------FNNSPPPIEVHVPINSIDEFNILIAHPVEIARQLTLLEFDYFRSVKPSELVGS 810 (1108)
Q Consensus 758 ---------------------------~~~~pp~i~~~~~~p~~~~~~ll~~~p~eiA~QLTl~e~~lf~~I~~~Ell~~ 810 (1108)
....+|..+...+ .......+++++|.|||+|||++|+++|++|+|.||+++
T Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~e~A~qlt~~~~~~f~~i~~~e~~~~ 787 (999)
T 4f7z_A 709 VVLKSNDVSVFTTLTINGRLFACPREQFDSLTPLPEQEGP-TTGTVGTFELMSSKDLAYQMTTYDWELFNCVHELELIYH 787 (999)
T ss_dssp EECCTTCBCCSTTSCTTCEEEEEEGGGSSSCCCCTTTTCC-SSCCHHHHTTSCHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred ccCCccccccccccccccccccccccccccCCCchhhccc-ccccccchhcCCHHHHHHHHHHHHHHHHcCCCHHHHHHh
Confidence 0000000000000 001345688999999999999999999999999999999
Q ss_pred cccCCCCCCCCchHHHHHHHHhhHhhHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHhhcccccccch
Q psy17173 811 VWTKKNKAEYSPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLR 890 (1108)
Q Consensus 811 ~w~k~~~~~~~pni~~~i~~fn~ls~wv~~~IL~~~~~~~Ra~~i~kfI~vA~~~~~l~NFns~~aI~sgL~s~~I~RLk 890 (1108)
+|++.++...+|||.+++.+||.+++||+++||.++++++||++|++||+||.+|++||||||+|||++||++++|+|||
T Consensus 788 ~~~~~~~~~~~~~~~~~~~~~n~~~~wv~~~il~~~~~~~R~~~~~~~i~ia~~~~~l~Nf~~~~ai~~~l~~~~i~RL~ 867 (999)
T 4f7z_A 788 TFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMGLSNVAVSRLA 867 (999)
T ss_dssp HHCHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHTTSHHHHTCH
T ss_pred HhhcCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcCCchhhhHH
Confidence 99988888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCChHHHHHHHHHHhh--hhhhHHHHHHHHhcCCCCcccchhhhHhHHHHHHhcCCCCCCCCCcccHHHHHHHHHH
Q psy17173 891 FTFQALPTRLQKVLEDAREL--NGDHFKKYQEKLRNINPPCIPFFGMYLTNILHIEEGNPDFLPDSKLINFTKRRKVAEI 968 (1108)
Q Consensus 891 ~Tw~~l~~~~~k~l~~l~~l--~~~n~~~yR~~l~~~~~p~IPflGv~L~DL~~i~egnp~~~~~~~lINf~K~r~i~~i 968 (1108)
+||+.||++.++.|++|..| +++||++||.+++++++|||||||+||+||+|+++|||++++ |+|||.|+++++++
T Consensus 868 ~tw~~~~~~~~~~~~~l~~l~~~~~n~~~yr~~l~~~~~p~iP~~g~~l~dl~~~~~gn~~~~~--~linf~k~~~~~~~ 945 (999)
T 4f7z_A 868 LTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAAKLEPPLIPFMPLLIKDMTFTHEGNKTFID--NLVNFEKMRMIANT 945 (999)
T ss_dssp HHHHTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCCSSCBCCHHHHHHHHHHHHHTSCSBSS--SSEEHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCeeceehHHHHHHHHHhccCCCCCC--CcCcHHHHHHHHHH
Confidence 99999999999999999999 578999999999999999999999999999999999999995 79999999999999
Q ss_pred HHHHHHHhcCCCCCCCch------HHHHHHHhcCCCCCCCchhhHHHHHHHhhhccCCCC
Q psy17173 969 ISEIQQYQNEPYCLSVVP------IYREFFENLSPFEGIDDNEMCNILFEQSLLIEPRHA 1022 (1108)
Q Consensus 969 i~~i~~~Q~~~Y~~~~~~------~i~~~l~~l~~~~~~~e~e~~d~ly~~Sl~iEPr~~ 1022 (1108)
|.+|++||+.||++.+.+ .++.|+.++..+. + +|.||++|+++|||.+
T Consensus 946 i~~i~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~l~~~S~~~EPr~p 999 (999)
T 4f7z_A 946 ARTVRYYRSQPFNPDAAQANKNHQDVRSYVRQLNVID---N---QRTLSQMSHRLEPRRP 999 (999)
T ss_dssp HHHHHHHTSSCCCCSSCC--CCCHHHHHHHHTCCCCC---C---HHHHHHHHHTTSCC--
T ss_pred HHHHHHHhcCCCCCCccchhhhHHHHHHHHHhCCCCC---C---HHHHHHHHHhcCCCCC
Confidence 999999999999987765 5788888765432 2 4679999999999863
No 4
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=100.00 E-value=2.9e-55 Score=544.58 Aligned_cols=391 Identities=20% Similarity=0.356 Sum_probs=300.9
Q ss_pred cccccCHHHHHHHHccCCCC-------ChhHHHHHHHhccccCCHHHHHHHHHHhcCCCCCCcccccCccchhhhhhHHH
Q psy17173 606 LIKGATLHKLIERLTYHIYA-------DPAFIGTFLTTYRSFTTPTELLDLLIDRFNVPDPNKVFENNNADIEESILRED 678 (1108)
Q Consensus 606 ~IkagTL~kLIe~Lt~~~~~-------D~~f~~~FLlTyrsFttp~~LL~~Li~Ry~~~~~~~~~~~~~~~~~~~~~~~~ 678 (1108)
.+..|+.++|.+.|...... +..|+.-|++||+.|+++.+++..|..+|.....+ |.. .++
T Consensus 182 l~l~~~~erL~~~LL~~~~ld~~~~~~~~~~~~dflLTh~~fm~~~~~~~~ll~~~~~~~~~----------~~~--~~~ 249 (694)
T 3cf6_E 182 TVMSGTPEKILEHFLETIRLEPSLNEATDSVLNDFVMMHCVFMPNTQLCPALVAHYHAQPSQ----------GTE--QER 249 (694)
T ss_dssp EEEEECHHHHHHHHHHTCCCCGGGHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTCCCSS----------SCH--HHH
T ss_pred hhhcccHHHHHHHHHHhcCCCccccccchhhhhhhhheehhhcCcHHHHHHHHHHhccCccC----------Ccc--ccc
Confidence 34578999999999755322 25899999999999999999999999999743211 110 011
Q ss_pred HHHHhhhccchhhhHHHHHHHHHHhhcccccccCHHHHHHHHHHHhhhccCc----hhHHHHH-----------------
Q psy17173 679 IIRYKKELCQPVQFRVLNVFRQWVQHHFYDFQRDQNLLEKLKSFLLNEISGK----SLRKWAD----------------- 737 (1108)
Q Consensus 679 ~~~~~~~~~~~vq~rVl~vl~~Wi~~~~~DF~~d~~ll~~L~~Fl~~~v~~~----~~~k~~~----------------- 737 (1108)
. ++....+.||+.++..|+..|+.||+.|+.+...|+.|........ .++....
T Consensus 250 ~-----~~~~~~~~~v~~~~~~w~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (694)
T 3cf6_E 250 M-----DYALNNKRRVIRLVLQWAAMYGDLLQEDDVAMAFLEEFYVSVSDDARMMAAFKEQLPELEKIVKQISEDAKAPQ 324 (694)
T ss_dssp H-----HHHHHHHHHHHHHHHHHHHHHGGGGGGCHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHC-----------
T ss_pred h-----hhhhhHHHHHHHHHHHHHHhcCCccccChHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHhhcCCcccCcc
Confidence 1 1112346799999999999999999999988887877743211000 0000000
Q ss_pred ----------------------------------------------------HHHHHHHHhhhhhh-----------hhh
Q psy17173 738 ----------------------------------------------------IVLNLIQRKELDLE-----------KEI 754 (1108)
Q Consensus 738 ----------------------------------------------------~l~~~l~r~~~~~~-----------~~~ 754 (1108)
.|.....++....+ ...
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~~~~~~~ 404 (694)
T 3cf6_E 325 KKHKVLLQQFNTGDERAQKRQPIRGSDEVLFKVYCIDHTYTTIRVPVAASVKEVISAVADKLGSGEGLIIVKMNSGGEKV 404 (694)
T ss_dssp -------------------CCCCCTTSEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHTCCSCEEEEEECTTSCEE
T ss_pred ccccccccccCCCCcccccCCCCCCCCceeEEEEccCCceeEEEeeccccHHHHHHHHHHHhCCcccceEEEEeecCccc
Confidence 11111111100000 000
Q ss_pred -----------hcccC------------CCCCCccccccCCCCccccccccCHHHHHHHHhHHHHHHhcCCChhhhhccc
Q psy17173 755 -----------TFAFN------------NSPPPIEVHVPINSIDEFNILIAHPVEIARQLTLLEFDYFRSVKPSELVGSV 811 (1108)
Q Consensus 755 -----------~~~~~------------~~pp~i~~~~~~p~~~~~~ll~~~p~eiA~QLTl~e~~lf~~I~~~Ell~~~ 811 (1108)
..+.+ ...|..++..+.++ ...+|++++|.+||+|||++|+++|++|.|.||++++
T Consensus 405 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~p~~~~~~p~~~-~~~~l~~~~~~elA~QLTl~d~~lf~~I~~~E~l~~~ 483 (694)
T 3cf6_E 405 VLKSNDVSVFTTLTINGRLFACPREQFDSLTPLPEQEGPTTG-TVGTFELMSSKDLAYQMTTYDWELFNCVHELELIYHT 483 (694)
T ss_dssp ECCTTCBCCGGGSCTTCEEEEEEGGGGGGCCCCGGGSCCSSC-CHHHHTTSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred ccCccccccccccccccceeccccccccccCCChhhcCCCCC-CCCchhcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 00000 00000001111111 2345889999999999999999999999999999999
Q ss_pred ccCCCCCCCCchHHHHHHHHhhHhhHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHhhcccccccchh
Q psy17173 812 WTKKNKAEYSPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRF 891 (1108)
Q Consensus 812 w~k~~~~~~~pni~~~i~~fn~ls~wv~~~IL~~~~~~~Ra~~i~kfI~vA~~~~~l~NFns~~aI~sgL~s~~I~RLk~ 891 (1108)
|++.++...+||+.+++++||.+++||+++||.++++++||++|++||+||.+|+++|||||+|||++||++++|+|||+
T Consensus 484 ~~~~~~~~~~pni~~~i~~fN~ls~wV~~~Il~~~~~~~Ra~~i~~fI~iA~~c~~l~Nfnsl~aIisgL~s~~I~RLk~ 563 (694)
T 3cf6_E 484 FGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMGLSNVAVSRLAL 563 (694)
T ss_dssp HCGGGTTCCCHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHTSHHHHTCHH
T ss_pred hccCCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCcchhhhHH
Confidence 99887777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCChHHHHHHHHHHhh--hhhhHHHHHHHHhcCCCCcccchhhhHhHHHHHHhcCCCCCCCCCcccHHHHHHHHHHH
Q psy17173 892 TFQALPTRLQKVLEDAREL--NGDHFKKYQEKLRNINPPCIPFFGMYLTNILHIEEGNPDFLPDSKLINFTKRRKVAEII 969 (1108)
Q Consensus 892 Tw~~l~~~~~k~l~~l~~l--~~~n~~~yR~~l~~~~~p~IPflGv~L~DL~~i~egnp~~~~~~~lINf~K~r~i~~ii 969 (1108)
||+.|+++.++.|++|+.+ +++||++||..++++++|||||+|+||+||+|+++|||++++ |+|||+|+|+++++|
T Consensus 564 TW~~l~~~~~~~~~~L~~l~~~~~N~~~yR~~l~~~~~p~IPflg~~L~DL~fi~egn~~~~~--~lINf~K~r~i~~ii 641 (694)
T 3cf6_E 564 TWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAAKLEPPLIPFMPLLIKDMTFTHEGNKTFID--NLVNFEKMRMIANTA 641 (694)
T ss_dssp HHHTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSCSSCBCCHHHHHHHHHHHHHHSCSEET--TEEEHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHhCccccHHHHHHHHHhcCCCCcccHHHHHHHHHHHHcCCCchhc--cCcCHHHHHHHHHHH
Confidence 9999999999999999998 578999999999999999999999999999999999999985 799999999999999
Q ss_pred HHHHHHhcCCCCCCC------chHHHHHHHhcCCCCCCCchhhHHHHHHHhhhccCCCC
Q psy17173 970 SEIQQYQNEPYCLSV------VPIYREFFENLSPFEGIDDNEMCNILFEQSLLIEPRHA 1022 (1108)
Q Consensus 970 ~~i~~~Q~~~Y~~~~------~~~i~~~l~~l~~~~~~~e~e~~d~ly~~Sl~iEPr~~ 1022 (1108)
.+|++||+.||++.+ .++|++|+.++..+ ++ +|.||++|+++|||.+
T Consensus 642 ~~i~~~q~~~y~~~~~~~~~~~~~i~~~l~~l~~~---~~---e~~l~~lSl~~EPr~~ 694 (694)
T 3cf6_E 642 RTVRYYRSQPFNPDAAQANKNHQDVRSYVRQLNVI---DN---QRTLSQMSHRLEPRRP 694 (694)
T ss_dssp HHHHHHTSSCCC---------CHHHHHHHTSCCCC---CC---HHHHHHHHHHHCC---
T ss_pred HHHHHHhhCCCCcCccccccchHHHHHHHHhCCCC---CC---HHHHHHHHHhcCCCCC
Confidence 999999999999875 47899999887543 33 3679999999999863
No 5
>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS guanine nucleotide releasing FACT specific nucleotide exchange factor; 2.20A {Mus musculus}
Probab=100.00 E-value=7.1e-56 Score=482.02 Aligned_cols=235 Identities=34% Similarity=0.635 Sum_probs=221.3
Q ss_pred ccCHHHHHHHHhHHHHHHhcCCChhhhhcccccCCCCCCCCchHHHHHHHHhhHhhHHHHHhcCCCCHHHHHHHHHHHHH
Q psy17173 781 IAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMTRIIE 860 (1108)
Q Consensus 781 ~~~p~eiA~QLTl~e~~lf~~I~~~Ell~~~w~k~~~~~~~pni~~~i~~fn~ls~wv~~~IL~~~~~~~Ra~~i~kfI~ 860 (1108)
.++|.|||+|||++|+++|++|+|.||++++|++.++...+||+.+++++||.+++||+++||.++++++||++|++||+
T Consensus 3 ~~~p~eiA~QLTl~d~~lf~~I~~~E~l~~~w~~~~~~~~~p~i~~~i~~fN~ls~wV~~~Il~~~~~~~Ra~~i~~fI~ 82 (240)
T 2ije_S 3 LGSALEIAEQLTLLDHLVFKSIPYEEFFGQGWMKAEKYERTPYIMKTTKHFNHVSNFIASEIIRNEDISARASAIEKWVA 82 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCGGGGGGGGGGSTTHHHHCHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCHHHHhhhHhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999988776679999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCChhHHHHHHHhhcccccccchhhhhcCChHHHHHHHHHHhh--hhhhHHHHHHHHhcCCCCcccchhhhHh
Q psy17173 861 MMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDAREL--NGDHFKKYQEKLRNINPPCIPFFGMYLT 938 (1108)
Q Consensus 861 vA~~~~~l~NFns~~aI~sgL~s~~I~RLk~Tw~~l~~~~~k~l~~l~~l--~~~n~~~yR~~l~~~~~p~IPflGv~L~ 938 (1108)
||.+|+++|||||+|||++||++++|+||++||+.|+++.++.|++|..+ +++||++||.+++++.+|||||+|+||+
T Consensus 83 iA~~~~~l~Nfns~~aI~~gL~~~~I~RLk~TW~~l~~~~~~~~~~L~~l~~~~~n~~~yR~~l~~~~~p~IPflg~~L~ 162 (240)
T 2ije_S 83 VADICRCLHNYNAVLEITSSINRSAIFRLKKTWLKVSKQTKSLLDKLQKLVSSDGRFKNLRESLRNCDPPCVPYLGMYLT 162 (240)
T ss_dssp HHHHHHHTTBHHHHHHHHHHHTSHHHHTCHHHHHTSCHHHHHHHHHHHHHTCCHHHHHHHHHHHHTCCSSCBCCHHHHHH
T ss_pred HHHHHHhcCCHhHHHHHHHHhccchhhhHHHHHHHhhHHHHHHHHHHHHHHCccchHHHHHHHHHhcCCCccCccchHHH
Confidence 99999999999999999999999999999999999999999999999998 5789999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCcccHHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHhcCCCCCCCchhhHHHHHHHhhhcc
Q psy17173 939 NILHIEEGNPDFLPDSKLINFTKRRKVAEIISEIQQYQNEPYCLSVVPIYREFFENLSPFEGIDDNEMCNILFEQSLLIE 1018 (1108)
Q Consensus 939 DL~~i~egnp~~~~~~~lINf~K~r~i~~ii~~i~~~Q~~~Y~~~~~~~i~~~l~~l~~~~~~~e~e~~d~ly~~Sl~iE 1018 (1108)
||+|+++|||++++ +|+|||+|+++++++|.+|++||+.+|+|.+++.|++||.++.. +.+ +|.+|++|+++|
T Consensus 163 DL~~i~egnp~~~~-~~lINf~K~~~~~~ii~~i~~~q~~~y~~~~~~~i~~~l~~~~~---~~~---e~~ly~~Sl~~E 235 (240)
T 2ije_S 163 DLVFIEEGTPNYTE-DGLVNFSKMRMISHIIREIRQFQQTTYKIDPQPKVIQYLLDESF---MLD---EESLYESSLLIE 235 (240)
T ss_dssp HHHHHHHHSCSBCT-TSCBCHHHHHHHHHHHHHHHHHHHSCCCCCCCHHHHHHHHCCTT---CCC---HHHHHHHHHHHS
T ss_pred HHHHHHhcCCCCCC-CCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHhCcC---CCC---HHHHHHHHHHhC
Confidence 99999999999986 48999999999999999999999999999999999999987542 223 367999999999
Q ss_pred CCCC
Q psy17173 1019 PRHA 1022 (1108)
Q Consensus 1019 Pr~~ 1022 (1108)
||.+
T Consensus 236 Pr~~ 239 (240)
T 2ije_S 236 PKLP 239 (240)
T ss_dssp CC--
T ss_pred CCCC
Confidence 9975
No 6
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A
Probab=100.00 E-value=8.6e-55 Score=502.93 Aligned_cols=343 Identities=37% Similarity=0.631 Sum_probs=292.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHhHhhhccCHHHHHHHHHHHHHHHHHhhccCCC---CCc
Q psy17173 208 LHYEQVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCLLGAVEDISEMSSD---DHC 284 (1108)
Q Consensus 208 ~sy~evi~ELi~TEr~Yv~~L~~ii~~f~~pl~~~~~l~~~~~i~~IFsNIeeI~~~~~~fL~~Le~~~~~~~~---~~~ 284 (1108)
++|++||+||++||++||++|+.++++|+.||.....+.+++++..|||||++|+++|+.||.+|+++++.+.+ .+.
T Consensus 2 ~~y~~vi~Eli~TE~~Yv~~L~~l~~~y~~~l~~~~~~l~~~~~~~iF~ni~~I~~~h~~fl~~L~~~~~~~~~~~~~~~ 81 (354)
T 1dbh_A 2 QTYYDLVKAFMAEIRQYIRELNLIIKVFREPFVSNSKLFSANDVENIFSRIVDIHELSVKLLGHIEDTVEMTDEGSPHPL 81 (354)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHCTTTCCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCCTTSSSCC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhccccCCccch
Confidence 79999999999999999999999999999999986666677999999999999999999999999999887643 378
Q ss_pred chhHHHhhhhcccchhHHHHHhhhccHHHHHHHHHHhcChhhHHHHHHhcccccccccccccccccccccchHhHHHHHH
Q psy17173 285 IGSCFEEFAEDAEFDVYEKLLHNIVNQKSIEVLSMHVTQPSILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYIK 364 (1108)
Q Consensus 285 IG~~F~~~a~~~~f~~Y~~Yc~N~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~slLi~PvQRI~rY~LLLk 364 (1108)
||+||+++++...|++|..||+|+.++.+.+.+.++.+++.+..+++..++.++.+.+++|++||++|||||+||+|||+
T Consensus 82 ig~~f~~~~~~~~f~~Y~~Y~~n~~~~~a~~~l~~~~~~~~f~~~l~~~~~~~~~~~~~~L~~~Li~PvQRi~rY~LLL~ 161 (354)
T 1dbh_A 82 VGSCFEDLAEELAFDPYESYARDILRPGFHDRFLSQLSKPGAALYLQSIGEGFKEAVQYVLPRLLLAPVYHCLHYFELLK 161 (354)
T ss_dssp CHHHHHHHHHTTTTHHHHHHHHHHTSTTHHHHHHHHHHSTTHHHHHHHHCTTHHHHHHHTHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHhhhhHHHHHHHhccchHHHHHHHHHhcChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhchHHHHHH
Confidence 99999998764479999999999977778899999999999999999888888889999999999999999999999999
Q ss_pred HHHhcCCCCc-hHHHHHHHHHHHHHHHHHHhhh---hhhhcCccccc---chhhhhhhHHHHHHHHHHHhhccCCCcccc
Q psy17173 365 IFHSLTDSSK-DKECLEQAQGLLAPLQISLSKI---SLEKNGKNACV---RNYNRVKHLQSLEKIHELKKNVDGVDVRDL 437 (1108)
Q Consensus 365 eLlK~Tp~~h-D~~~L~~A~~~~~~v~~~ine~---~~~k~~~~~~~---~~~e~~rk~~~~~kl~eiq~~I~g~~~~~l 437 (1108)
+|+|+||+ | ||.+|++|+..|++++..||+. ..++|..++.. -.|+++|+.++++++.++|+.|+||+|.++
T Consensus 162 ~llk~t~~-~~d~~~L~~Al~~~~~v~~~in~~~~~~~~~r~~~e~~~~~~~ne~~r~~e~~~~l~~lq~~i~~~~~~~l 240 (354)
T 1dbh_A 162 QLEEKSED-QEDKECLKQAITALLNVQSGMEKICSKSLAKRRLSESACRFYSQQMKGKQLAIKKMNEIQKNIDGWEGKDI 240 (354)
T ss_dssp HHHHHCSC-HHHHHHHHHHHHHTHHHHHHHHHHHHSHHHHHHHHHTC-------------CTHHHHHHHTTEESCCSSCG
T ss_pred HHHhcCCC-CccHHHHHHHHHHHHHHHHHHHHHhhcccccccccchhhhhhhhhhhhhHHHHHHHHHHHHHhcCCCCccc
Confidence 99999986 8 9999999999999999999982 11222211100 125678888999999999999999999999
Q ss_pred cccccceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCcc
Q psy17173 438 RPYLEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDD 517 (1108)
Q Consensus 438 ~~~~r~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~ 517 (1108)
..++|+||++|.+.+.+ +. ++||+|||||+||+||++++++. ..+..+..|++++.+++.++.|.+.+|+++
T Consensus 241 ~~~~r~li~eG~l~~~g--~~--~~~~~fLF~d~Ll~~k~~~~~~~----~~~~~~~~y~~k~~i~l~~~~v~~~~d~~~ 312 (354)
T 1dbh_A 241 GQCCNEFIMEGTLTRVG--AK--HERHIFLFDGLMICCKSNHGQPR----LPGASNAEYRLKEKFFMRKVQINDKDDTNE 312 (354)
T ss_dssp GGTCCCEEEEEEEEETT--CS--SCEEEEEESSEEEEEEECTTCCC----CTTSCCCSEEEEEEEESCSCEEEECCCSSS
T ss_pred ccccceEEEEeeEEEEe--cC--ceEEEEEeCCEEEEEecCCCCCC----CCCCCCcceeEEEEEeccceEEEeCCcccc
Confidence 99999999999999883 22 59999999999999999764221 122245689999999999999999999989
Q ss_pred ccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHHhhHHHH
Q psy17173 518 IKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVNTKSMLE 559 (1108)
Q Consensus 518 ~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~~~s~l~ 559 (1108)
.+|+|+|.+.++.+|+|+|+|+++|+.|+++|.+++++++++
T Consensus 313 ~~~~F~i~~~~~~~~~l~a~s~~ek~~W~~~i~~~~~~~~l~ 354 (354)
T 1dbh_A 313 YKHAFEIILKDENSVIFSAKSAEEKNNWMAALISLQYRSTLE 354 (354)
T ss_dssp CCSEEEECCTTSCCEEEECSSHHHHHHHHHHHHHHHTTTTC-
T ss_pred cCccEEEecCCCCEEEEEeCCHHHHHHHHHHHHHHHhhccCC
Confidence 999999998766799999999999999999999999988763
No 7
>3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain homology, guanine-nucleotide exchange factor, S GTPase RAL subfamily; 2.24A {Homo sapiens}
Probab=100.00 E-value=4e-54 Score=474.64 Aligned_cols=243 Identities=26% Similarity=0.510 Sum_probs=223.7
Q ss_pred ccccccccCHHHHHHHHhHHHHHHhcCCChhhhhcccccCCCCCCCCchHHHHHHHHhhHhhHHHHHhcCCCCHHHHHHH
Q psy17173 775 DEFNILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAI 854 (1108)
Q Consensus 775 ~~~~ll~~~p~eiA~QLTl~e~~lf~~I~~~Ell~~~w~k~~~~~~~pni~~~i~~fn~ls~wv~~~IL~~~~~~~Ra~~ 854 (1108)
..+++++++|.|||+|||++|+++|++|+|.||++++|+++++...+||+.+++++||.+++||+++||.++++++||++
T Consensus 24 ~~fdil~~~p~elA~QLTlid~~lF~~I~p~E~l~~~w~k~~~~~~~pnl~~~i~~fN~ls~wV~~~IL~~~~~~~Ra~~ 103 (271)
T 3qxl_A 24 VVFDVLKVTPEEFASQITLMDIPVFKAIQPEELASCGWSKKEKHSLAPNVVAFTRRFNQVSFWVVREILTAQTLKIRAEI 103 (271)
T ss_dssp --CCGGGSCHHHHHHHHHHHHHHHHHTCCHHHHHHTCTTSTTHHHHCHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred cccccccCCHHHHHHHHHHHHHHHHcCCCHHHHHHhHhccCCcCCCCCcHHHHHHHHhHHHHHHHHHhcccCCHHHHHHH
Confidence 57889999999999999999999999999999999999988766679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHhhcccccccchhhhhcCChHHHHHHHHHHhh--hhhhHHHHHHHHhcCC-CCccc
Q psy17173 855 MTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDAREL--NGDHFKKYQEKLRNIN-PPCIP 931 (1108)
Q Consensus 855 i~kfI~vA~~~~~l~NFns~~aI~sgL~s~~I~RLk~Tw~~l~~~~~k~l~~l~~l--~~~n~~~yR~~l~~~~-~p~IP 931 (1108)
|++||+||.+|+++|||||+|||++||++++|+|||+||+.|+++.++.|++|..+ +++||++||+.++++. +||||
T Consensus 104 i~kfI~IA~~c~~l~Nfnsl~AIisgL~s~~I~RLk~TW~~l~~k~~~~~~~L~~l~~~~~N~~~yR~~l~~~~~~p~IP 183 (271)
T 3qxl_A 104 LSHFVKIAKKLLELNNLHSLMSVVSALQSAPIFRLTKTWALLNRKDKTTFEKLDYLMSKEDNYKRTREYIRSLKMVPSIP 183 (271)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHHTSHHHHTCHHHHHTSCHHHHHHHHHHHHHTCCHHHHHHHHHHHHTTTTSCCBC
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHcccchHHHHHHHHHHCCHHHHHHHHHHHHHcCcchhHHHHHHHHHhcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999998 5799999999999886 99999
Q ss_pred chhhhHhHHHHHHhcCCCCCCCCCcccHHHHHHHHHHHHHHHHHhcC-CCC-CCCchHHHHHHHhcCCCCCCCchhhHHH
Q psy17173 932 FFGMYLTNILHIEEGNPDFLPDSKLINFTKRRKVAEIISEIQQYQNE-PYC-LSVVPIYREFFENLSPFEGIDDNEMCNI 1009 (1108)
Q Consensus 932 flGv~L~DL~~i~egnp~~~~~~~lINf~K~r~i~~ii~~i~~~Q~~-~Y~-~~~~~~i~~~l~~l~~~~~~~e~e~~d~ 1009 (1108)
|+|+||+||+|+++|||++ +++++||.|++++++++.+|++||+. +|+ |.++|.||+||.++..+..+ ..-.+|+
T Consensus 184 flg~~L~DL~fi~~g~p~~--~~~l~n~~k~~~~~~i~~~I~~~Q~~~~Y~~~~~~~~iq~~l~~~~~i~~~-~~~~ed~ 260 (271)
T 3qxl_A 184 YLGIYLLDLIYIDSAYPAS--GSIMENEQRSNQMNNILRIIADLQVSCSYDHLTTLPHVQKYLKSVRYIEEL-QKFVEDD 260 (271)
T ss_dssp CHHHHHHHHHHHHHHSCSS--SCHHHHHHHHHHHHHHHHHHHHHHHTCCCTTCCCCHHHHHHHHTSCCCGGG-HHHHHHH
T ss_pred chHHHHHHHHHHHhcCCCc--ccccccHHHHHHHHHHHHHHHHHhhhccCCCCCCChHHHHHHHHhHHHHhh-cCCCHHH
Confidence 9999999999999999997 34678899999999999999999998 994 99999999999986544332 1224688
Q ss_pred HHHHhhhccCC
Q psy17173 1010 LFEQSLLIEPR 1020 (1108)
Q Consensus 1010 ly~~Sl~iEPr 1020 (1108)
+|++|+++||.
T Consensus 261 ~y~lSl~iEP~ 271 (271)
T 3qxl_A 261 NYKLSLRIEPG 271 (271)
T ss_dssp HHHHHHHHCC-
T ss_pred HHHHHHhcCCC
Confidence 99999999994
No 8
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1
Probab=100.00 E-value=2.6e-51 Score=481.14 Aligned_cols=333 Identities=17% Similarity=0.258 Sum_probs=293.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHhHhhhccCHHHHHHHHHHHHHHHHHhhccCCC-CCcch
Q psy17173 208 LHYEQVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCLLGAVEDISEMSSD-DHCIG 286 (1108)
Q Consensus 208 ~sy~evi~ELi~TEr~Yv~~L~~ii~~f~~pl~~~~~l~~~~~i~~IFsNIeeI~~~~~~fL~~Le~~~~~~~~-~~~IG 286 (1108)
..+++||+||++||++||++|+.|+++|+.|+.....+.+++++..|||||++|+++|+.||.+|+++...|.+ .+.||
T Consensus 40 ~kR~~vi~ELl~TE~~Yv~~L~~l~~~y~~pl~~~~~~l~~~~~~~iF~ni~~I~~~h~~fL~~Le~~~~~~~~~~~~ig 119 (402)
T 2dfk_A 40 QMRANVINEIMSTERHYIKHLKDICEGYLKQCRKRRDMFSDEQLKVIFGNIEDIYRFQMGFVRDLEKQYNNDDPHLSEIG 119 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCTTTCCHHHHHHHHTTHHHHHHHHHHHHHHHHHHCCSSCGGGCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHhcHHHHHHHHHHHHHHHHHHHccCCCchhhHH
Confidence 46778999999999999999999999999999865555667999999999999999999999999999887654 46899
Q ss_pred hHHHhhhhcccchhHHHHHhhhccHHHHHHHHHHhcChhhHHHHHHhcccccccccccccccccccccchHhHHHHHHHH
Q psy17173 287 SCFEEFAEDAEFDVYEKLLHNIVNQKSIEVLSMHVTQPSILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYIKIF 366 (1108)
Q Consensus 287 ~~F~~~a~~~~f~~Y~~Yc~N~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~slLi~PvQRI~rY~LLLkeL 366 (1108)
+||++++ ..|++|..||+|+ +.+...+.++.+++++..+++. |+..+.+.+++|++||++|||||+||+|||++|
T Consensus 120 ~ifl~~~--~~f~~Y~~Y~~n~--~~a~~~l~~~~~~~~f~~fl~~-~~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~L 194 (402)
T 2dfk_A 120 PCFLEHQ--DGFWIYSEYCNNH--LDACMELSKLMKDSRYQHFFEA-CRLLQQMIDIAIDGFLLTPVQKICKYPLQLAEL 194 (402)
T ss_dssp HHHHHTT--TGGGHHHHHHHHH--HHHHHHHHHHTTSHHHHHHHHH-HHHHTTCCSCCHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--hhhHHHHHHHHhh--HHHHHHHHHHHcChHHHHHHHH-HHhhhhcccCCHHHHHhHHHHHHHHHHHHHHHH
Confidence 9999985 4689999999999 6999999999998888877775 555566778999999999999999999999999
Q ss_pred HhcCCCCc-hHHHHHHHHHHHHHHHHHHhhhhhhhcCcccccchhhhhhhHHHHHHHHHHHhhccCCCccccccccccee
Q psy17173 367 HSLTDSSK-DKECLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKNVDGVDVRDLRPYLEEFY 445 (1108)
Q Consensus 367 lK~Tp~~h-D~~~L~~A~~~~~~v~~~ine~~~~k~~~~~~~~~~e~~rk~~~~~kl~eiq~~I~g~~~~~l~~~~r~li 445 (1108)
+||||++| ||.+|+.|+..|+.++..||+. +++.++.+++.++|..|+||+|.++..++|+||
T Consensus 195 lk~t~~~~~d~~~L~~Al~~i~~v~~~iNe~----------------~r~~e~~~~l~~lq~~i~~~~~~~l~~~~r~Li 258 (402)
T 2dfk_A 195 LKYTAQDHSDYRYVAAALAVMRNVTQQINER----------------KRRLENIDKIAQWQASVLDWEGDDILDRSSELI 258 (402)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHHHHHHHHHHH----------------HHHHHTHHHHHHHHHHSBTCCSSCGGGTCCCEE
T ss_pred HhhCCCCCcCHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHhcCCCCccccccccceE
Confidence 99999999 9999999999999999999887 678888999999999999999999888899999
Q ss_pred eeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCc------ccc
Q psy17173 446 REDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTD------DIK 519 (1108)
Q Consensus 446 ~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~------~~~ 519 (1108)
++|.|.++.....+.++||+|||||+||+||+.+.+. ..|.+++.+++.++.|.+.+|++ ..+
T Consensus 259 ~~G~l~~~~~~~~k~~~r~~fLF~d~Ll~~k~~~~~~-----------~~~~~k~~i~l~~~~v~~~~d~~~~~~~~~~~ 327 (402)
T 2dfk_A 259 YTGEMAWIYQPYGRNQQRVFFLFDHQMVLCKKDLIRR-----------DILYYKGRIDMDKYEVIDIEDGRDDDFNVSMK 327 (402)
T ss_dssp EEEEEEEESSTTCCCEEEEEEEETTEEEEEEECSSCT-----------TCEEEEEEEEGGGEEEEECCSEECSSSCCEES
T ss_pred EeceEEEEeccCCceEEEEEEeeCCEEEEEEeccccC-----------CceEEeeeeeccceEEEecCCCCccccccccc
Confidence 9999998876222236999999999999999875422 37999999999999999998875 347
Q ss_pred ccEEeecCC-CCeEEEEeCCHHHHHHHHHHHHHHHhhHHHHHhhhhhccccccc
Q psy17173 520 NAFEIAPRD-QPSIIIVTKSPEDKKSWFSDLIMVNTKSMLERTLDSIILDEEKK 572 (1108)
Q Consensus 520 ~aF~I~~~~-~~~~~l~a~s~eeK~~Wm~~L~~l~~~s~l~~~lds~l~~eek~ 572 (1108)
|+|+|...+ +.+|+|+|+|+++|+.|+++|.+++.+....+.++..+.+++++
T Consensus 328 ~~F~i~~~~~~~~~~l~a~s~~eK~~Wi~~i~~a~~~~~~~~~~g~~~~e~~~k 381 (402)
T 2dfk_A 328 NAFKLHNKETEEVHLFFAKKLEEKIRWLRAFREERKMVQEDEKIGFEISENQKR 381 (402)
T ss_dssp SEEEEEESSSSCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred eeEEEEECCCCeEEEEEeCCHHHHHHHHHHHHHHHHHHHhhhhcCCccCHHHHH
Confidence 899999764 45899999999999999999999988888877776666666544
No 9
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Probab=100.00 E-value=8.5e-51 Score=486.42 Aligned_cols=336 Identities=19% Similarity=0.296 Sum_probs=285.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHhHhhhccCHHHHHHHHHHHHHHHHHhhccCCC-CCcch
Q psy17173 208 LHYEQVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCLLGAVEDISEMSSD-DHCIG 286 (1108)
Q Consensus 208 ~sy~evi~ELi~TEr~Yv~~L~~ii~~f~~pl~~~~~l~~~~~i~~IFsNIeeI~~~~~~fL~~Le~~~~~~~~-~~~IG 286 (1108)
..|++||+||++||++||++|+.|+++|++|+.....+.+.+++..||+||++|+++|+.||.+|+++++.+.. ...||
T Consensus 117 ~kR~~vi~ELl~TE~~Yv~~L~~l~~~y~~~l~~~~~~l~~~~~~~iF~ni~~I~~~h~~fL~~Le~~~~~~~~~~~~ig 196 (466)
T 2pz1_A 117 QMRTNVINEILSTERDYIKHLRDICEGYVRQCRKRADMFSEEQLRTIFGNIEDIYRCQKAFVKALEQRFNRERPHLSELG 196 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCTTTCCHHHHHHHHTTHHHHHHHHHHHHHHHHHHCCSSCGGGCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHccCCCccchHH
Confidence 56788999999999999999999999999999866566677999999999999999999999999999887654 46899
Q ss_pred hHHHhhhhcccchhHHHHHhhhccHHHHHHHHHHhcChhhHHHHHHhcccccccccccccccccccccchHhHHHHHHHH
Q psy17173 287 SCFEEFAEDAEFDVYEKLLHNIVNQKSIEVLSMHVTQPSILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYIKIF 366 (1108)
Q Consensus 287 ~~F~~~a~~~~f~~Y~~Yc~N~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~slLi~PvQRI~rY~LLLkeL 366 (1108)
+||++++ ..|++|..||+|+ +.+...+.++.+++++..+++. |+..+.+.+++|.+||++|||||+||+|||++|
T Consensus 197 ~~fl~~~--~~f~~Y~~Y~~n~--~~a~~~l~~~~~~~~f~~f~~~-~~~~~~~~~l~L~~~Li~PvQRi~rY~LLL~~l 271 (466)
T 2pz1_A 197 ACFLEHQ--ADFQIYSEYCNNH--PNACVELSRLTKLSKYVYFFEA-CRLLQKMIDISLDGFLLTPVQKICKYPLQLAEL 271 (466)
T ss_dssp HHHHHTH--HHHTTHHHHHHHH--HHHHHHHHHHHTCHHHHHHHHH-HHHHHTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhh--HHHHHHHHHHHhh--HHHHHHHHHHHhccHHHHHHHH-HHHhhhhccCCHHHHhhhHHHHhhhHHHHHHHH
Confidence 9999986 4689999999999 6999999999999888877775 555566778999999999999999999999999
Q ss_pred HhcCCCCc-hHHHHHHHHHHHHHHHHHHhhhhhhhcCcccccchhhhhhhHHHHHHHHHHHhhccCCCccccccccccee
Q psy17173 367 HSLTDSSK-DKECLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKNVDGVDVRDLRPYLEEFY 445 (1108)
Q Consensus 367 lK~Tp~~h-D~~~L~~A~~~~~~v~~~ine~~~~k~~~~~~~~~~e~~rk~~~~~kl~eiq~~I~g~~~~~l~~~~r~li 445 (1108)
+||||++| ||.+|++|+..|+.++..||+. +|+.++.+++.++|..|+||+|.++..++|+||
T Consensus 272 lk~t~~~~~d~~~l~~Al~~i~~v~~~iNe~----------------~r~~e~~~~l~~lq~~i~~~~~~~l~~~~r~li 335 (466)
T 2pz1_A 272 LKYTHPQHRDFKDVEAALHAMKNVAQLINER----------------KRRLENIDKIAQWQSSIEDWEGEDLLVRSSELI 335 (466)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHSBTCCSSCHHHHCSCEE
T ss_pred HhcCCCCCcCHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHhcCCCCcccccccceeE
Confidence 99999999 9999999999999999999887 688889999999999999999998888899999
Q ss_pred eeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCc------ccc
Q psy17173 446 REDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTD------DIK 519 (1108)
Q Consensus 446 ~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~------~~~ 519 (1108)
++|.|.++.....+.++||+|||||+||+||+++.+. ..|.+++.+++.++.|.+.+|++ ..+
T Consensus 336 ~~G~l~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~~-----------~~~~~k~~i~l~~~~v~~~~d~~~~~~~~~~~ 404 (466)
T 2pz1_A 336 YSGELTRVTQPQAKSQQRMFFLFDHQLIYCKKDLLRR-----------DVLYYKGRLDMDGLEVVDLEDGKDRDLHVSIK 404 (466)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEETTEEEEEEECSSCT-----------TCEEEEEEEETTTCEEEECCSBSCCSSCCCBC
T ss_pred EeeeEEEEecCCCCeeEEEEEEECCEEEEEEeccccC-----------CceEEeeeeeccceEEEeCCCCcccccccccc
Confidence 9999998876333347999999999999999865422 37999999999999999998875 357
Q ss_pred ccEEeecCC-CCeEEEEeCCHHHHHHHHHHHHHHHhhHHHHHhhhhhcccccccCcC
Q psy17173 520 NAFEIAPRD-QPSIIIVTKSPEDKKSWFSDLIMVNTKSMLERTLDSIILDEEKKHPL 575 (1108)
Q Consensus 520 ~aF~I~~~~-~~~~~l~a~s~eeK~~Wm~~L~~l~~~s~l~~~lds~l~~eek~~pL 575 (1108)
|+|+|...+ +.+|+|+|+|+++|+.||++|.+++.+...++.++..+.++++++++
T Consensus 405 ~~F~i~~~~~~~~~~l~a~s~~eK~~W~~~i~~a~~~~~~~~~~~~~~~e~~~k~~~ 461 (466)
T 2pz1_A 405 NAFRLHRGATGDSHLLCTRKPEQKQRWLKAFAREREQVQLDQETGFSITELQRKQAM 461 (466)
T ss_dssp EEEEEECSSSCCEEEEEESSHHHHHHHHHHHHHHHHHHHTC----------------
T ss_pred eeEEEEeCCCCeEEEEEeCCHHHHHHHHHHHHHHHHHHHhhhhcCcccCHHHHHHHH
Confidence 899999764 56899999999999999999999988888777777777888877765
No 10
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Probab=100.00 E-value=8.8e-48 Score=442.95 Aligned_cols=308 Identities=15% Similarity=0.220 Sum_probs=254.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHhHhhhccCHHHHHHHHHHHHHHHHHhhccCCCCCcchh
Q psy17173 208 LHYEQVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCLLGAVEDISEMSSDDHCIGS 287 (1108)
Q Consensus 208 ~sy~evi~ELi~TEr~Yv~~L~~ii~~f~~pl~~~~~l~~~~~i~~IFsNIeeI~~~~~~fL~~Le~~~~~~~~~~~IG~ 287 (1108)
..+++||+||++||++||++|+.++++|+.||.....+ +++++..||+||++|+++|+.||.+|+++...|+..+.||+
T Consensus 18 ~kR~~vi~Eli~TE~~Yv~~L~~l~~~y~~~l~~~~~l-~~~~~~~iF~ni~~i~~~h~~fl~~L~~~~~~~~~~~~ig~ 96 (346)
T 2z0q_A 18 IKRQEAIFELSQGEEDLIEDLKLAKKAYHDPMLKLSIM-TEQELNQIFGTLDSLIPLHEELLSQLRDVRKPDGSTEHVGP 96 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSS-CHHHHHHHHTTHHHHHHHHHHHHHHHHHHCCTTSCCSCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCCccchHHH
Confidence 46788999999999999999999999999999986544 46899999999999999999999999999998877889999
Q ss_pred HHHhhhhcccchhHHHHHhhhccHHHHHHHHHHhcChhhHHHHHHhcccccccccccccccccccccchHhHHHHHHHHH
Q psy17173 288 CFEEFAEDAEFDVYEKLLHNIVNQKSIEVLSMHVTQPSILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYIKIFH 367 (1108)
Q Consensus 288 ~F~~~a~~~~f~~Y~~Yc~N~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~slLi~PvQRI~rY~LLLkeLl 367 (1108)
||++++ ..|++|..||+|+ +.+...+.++.+++.+..+++. ++..+.+.+++|.+||++|||||+||+|||++|+
T Consensus 97 ~f~~~~--~~~~~Y~~Y~~n~--~~a~~~l~~~~~~~~f~~fl~~-~~~~~~~~~l~L~~~L~~PvQRi~rY~LLL~~ll 171 (346)
T 2z0q_A 97 ILVGWL--PCLSSYDSYCSNQ--VAAKALLDHKKQDHRVQDFLQR-CLESPFSRKLDLWNFLDIPRSRLVKYPLLLREIL 171 (346)
T ss_dssp HHHHHG--GGGGHHHHHHHHH--HHHHHHHHHHTTCHHHHCC--------------CTTTGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh--hHHHHHHHHHHCH--HHHHHHHHHhhcCHHHHHHHHH-HHhCccCCCCCHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999986 4589999999999 6999999998888888888775 5556677889999999999999999999999999
Q ss_pred hcCCCCc-hHHHHHHHHHHHHHHHHHHhhhhhhhcCcccccchhhhhhhHHHHHHHHHHHhhccCCCcccccccccceee
Q psy17173 368 SLTDSSK-DKECLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKNVDGVDVRDLRPYLEEFYR 446 (1108)
Q Consensus 368 K~Tp~~h-D~~~L~~A~~~~~~v~~~ine~~~~k~~~~~~~~~~e~~rk~~~~~kl~eiq~~I~g~~~~~l~~~~r~li~ 446 (1108)
||||++| ||.+|++|++.|+.++..||+. +++.++..++.+|+...++|++ ++..++|.||+
T Consensus 172 k~t~~~~~d~~~l~~A~~~~~~v~~~iN~~----------------~~~~e~~~~~~~l~~~~~~~~~-~l~~~~r~li~ 234 (346)
T 2z0q_A 172 RHTPNDNPDQQHLEEAINIIQGIVAEINTK----------------TGESECRYYKERLLYLEEGQKD-SLIDSSRVLCC 234 (346)
T ss_dssp HTSCTTSTHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHEECCSTTCCC-HHHHTCCCEEE
T ss_pred hcCCCCCccHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHhhhccCCC-ccccCCeEEEE
Confidence 9999999 9999999999999999999987 4555655667777766667754 34456789999
Q ss_pred eeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeE-EEEEeeccCeEEeecCCC----------
Q psy17173 447 EDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFK-CKEMYFLRKVEINDYENT---------- 515 (1108)
Q Consensus 447 eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~-~k~~i~l~~~~I~d~~d~---------- 515 (1108)
+|.+.+.+ + ++||+|||||+||+||+.+.+. ...|. +++.+++.++.|.+..|+
T Consensus 235 ~G~l~~~~--~---~~~~~fLF~d~Ll~~k~~~~~~----------~~~~~v~k~~i~l~~l~v~~~~d~~~~~~~s~~g 299 (346)
T 2z0q_A 235 HGELKNNR--G---VKLHVFLFQEVLVITRAVTHNE----------QLCYQLYRQPIPVKDLTLEDLQDGEVRLGGSLRG 299 (346)
T ss_dssp EEEEEETT--S---CEEEEEEESSEEEEEEEEEETT----------EEEEEESSCCEEGGGCEEEECCTTTSCCCSCC--
T ss_pred eceeEECC--C---cEEEEEECCCcEEEEEEeccCC----------ceeeeeecCCcchhhceeeecCCCccccCccccc
Confidence 99998632 2 4999999999999999865321 12566 578999999999999876
Q ss_pred -----ccccccEEeecC---CCCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17173 516 -----DDIKNAFEIAPR---DQPSIIIVTKSPEDKKSWFSDLIMVN 553 (1108)
Q Consensus 516 -----~~~~~aF~I~~~---~~~~~~l~a~s~eeK~~Wm~~L~~l~ 553 (1108)
+..+|+|.|... .+.+|+|+|+|+++|+.|+++|.++.
T Consensus 300 ~~~~~~~~~~~F~i~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai 345 (346)
T 2z0q_A 300 AFSNNERVKNFFRVSFKNGSQSQTHSLQANDTFNKQQWLNCIRQAK 345 (346)
T ss_dssp CCSHHHHTSSEEEEEECCGGGCEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cccCCcccccceEEEEecCCCCceEEEEECCHHHHHHHHHHHHHhh
Confidence 346899999853 24589999999999999999998764
No 11
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=100.00 E-value=1.1e-46 Score=443.08 Aligned_cols=306 Identities=17% Similarity=0.265 Sum_probs=262.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHhHhhhccCHHHHHHHHHHHHHHHHHhhccCCCCCcchh
Q psy17173 208 LHYEQVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCLLGAVEDISEMSSDDHCIGS 287 (1108)
Q Consensus 208 ~sy~evi~ELi~TEr~Yv~~L~~ii~~f~~pl~~~~~l~~~~~i~~IFsNIeeI~~~~~~fL~~Le~~~~~~~~~~~IG~ 287 (1108)
..+++||+||++||++||++|+.++++|+.||.. ..+++++..||+||++|+++|+.||.+|+++...|. .+.||+
T Consensus 24 ~kR~~vi~ELi~TE~~Yv~~L~~l~~~f~~~l~~---~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~~~~~~-~~~ig~ 99 (406)
T 2vrw_B 24 DKRCCCLREIQQTEEKYTDTLGSIQQHFMKPLQR---FLKPQDMETIFVNIEELFSVHTHFLKELKDALAGPG-ATTLYQ 99 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTT---TSCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSGG-GTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCC-ccHHHH
Confidence 4678899999999999999999999999999975 345689999999999999999999999999998774 478999
Q ss_pred HHHhhhhcccchhHHHHHhhhccHHHHHHHHHHhc-ChhhHHHHHHhcccccccccccccccccccccchHhHHHHHHHH
Q psy17173 288 CFEEFAEDAEFDVYEKLLHNIVNQKSIEVLSMHVT-QPSILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYIKIF 366 (1108)
Q Consensus 288 ~F~~~a~~~~f~~Y~~Yc~N~~~~~a~~~l~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~slLi~PvQRI~rY~LLLkeL 366 (1108)
||++++ ..|++|..||+|+ +.+...+.++.+ ++.+..+++. ++..+.+.+++|.+||++|||||+||+|||++|
T Consensus 100 ~f~~~~--~~~~~Y~~Y~~n~--~~a~~~l~~~~~~~~~f~~~l~~-~~~~~~~~~l~L~~~Li~PvQRi~rY~LLL~~l 174 (406)
T 2vrw_B 100 VFIKYK--ERFLVYGRYCSQV--ESASKHLDQVATAREDVQMKLEE-CSQRANNGRFTLRDLLMVPMQRVLKYHLLLQEL 174 (406)
T ss_dssp HHHHHT--TGGGHHHHHHHHH--HHHHHHHHHHHHHCHHHHHHHHH-HHHHHHTTSCCHHHHTTHHHHHHTTHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHHHhH--HHHHHHHHHHHhcCHHHHHHHHH-HhhccccCCcchHHHhhhHHHHHhhHHHHHHHH
Confidence 999986 4589999999999 699999999875 6788777765 444456678999999999999999999999999
Q ss_pred HhcCCCCc-hHHHHHHHHHHHHHHHHHHhhhhhhhcCcccccchhhhhhhHHHHHHHHHHHhhccCCCccccccccccee
Q psy17173 367 HSLTDSSK-DKECLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKNVDGVDVRDLRPYLEEFY 445 (1108)
Q Consensus 367 lK~Tp~~h-D~~~L~~A~~~~~~v~~~ine~~~~k~~~~~~~~~~e~~rk~~~~~kl~eiq~~I~g~~~~~l~~~~r~li 445 (1108)
+|+| ++| ||.+|++|++.|++++..||+. +|+.++..++.+||..|+||++. +.. .++++
T Consensus 175 lk~t-~~~~d~~~l~~Al~~i~~v~~~iNe~----------------~r~~e~~~~l~~lq~~i~~~~~~-l~~-~grli 235 (406)
T 2vrw_B 175 VKHT-QDATEKENLRLALDAMRDLAQCVNEV----------------KRDNETLRQITNFQLSIENLDQS-LAN-YGRPK 235 (406)
T ss_dssp HHHC-CCHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHEESCSSC-GGG-GCSEE
T ss_pred HHhC-CCChhHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHhCCCcc-ccc-cCccc
Confidence 9999 788 9999999999999999999987 67788889999999999999874 332 24699
Q ss_pred eeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCc----ccccc
Q psy17173 446 REDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTD----DIKNA 521 (1108)
Q Consensus 446 ~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~----~~~~a 521 (1108)
++|.+.+....++..++||+|||||+||+||++.. .|.++..+++.++.|.+.++++ ..+++
T Consensus 236 ~~G~l~~~~~~~~~~~~~~~fLF~d~Ll~~k~k~~--------------~y~~k~~i~l~~~~v~~~~~~~~~~~~~~~~ 301 (406)
T 2vrw_B 236 IDGELKITSVERRSKTDRYAFLLDKALLICKRRGD--------------SYDLKASVNLHSFQVRDDSSGERDNKKWSHM 301 (406)
T ss_dssp EEEEEEEECSSCCSCEEEEEEEESSEEEEEEEETT--------------EEEEEEEEETTTEEEEC--------CTTCEE
T ss_pred ccccEEEEecCCCccceEEEEecCCEEEEEEecCC--------------ceEEEEEecccceeeeecCCCCccCCcccee
Confidence 99999987654333379999999999999998632 7999999999999999887764 45799
Q ss_pred EEeecC-CCCeEEEEeCCHHHHHHHHHHHHHHHhh
Q psy17173 522 FEIAPR-DQPSIIIVTKSPEDKKSWFSDLIMVNTK 555 (1108)
Q Consensus 522 F~I~~~-~~~~~~l~a~s~eeK~~Wm~~L~~l~~~ 555 (1108)
|.|... +..+|+|+|+|+++|+.|+++|.++...
T Consensus 302 F~i~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~ 336 (406)
T 2vrw_B 302 FLLIEDQGAQGYELFFKTRELKKKWMEQFEMAISN 336 (406)
T ss_dssp EEEEETTCSCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred eEEEecCCCceEEEeCCCHHHHHHHHHHHHHHHhh
Confidence 999865 4568999999999999999999876543
No 12
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*
Probab=100.00 E-value=7.6e-47 Score=438.81 Aligned_cols=322 Identities=17% Similarity=0.210 Sum_probs=265.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHhHhhhccCHHHHHHHHHHHHHHHHHhhccCCCCCcchh
Q psy17173 208 LHYEQVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCLLGAVEDISEMSSDDHCIGS 287 (1108)
Q Consensus 208 ~sy~evi~ELi~TEr~Yv~~L~~ii~~f~~pl~~~~~l~~~~~i~~IFsNIeeI~~~~~~fL~~Le~~~~~~~~~~~IG~ 287 (1108)
..+++||+||++||++||++|+.++++|+.||..... .+++++..|||||++|+++|+.||..|+++.+.++..+.||+
T Consensus 20 ~kR~~vi~ELi~TE~~Yv~~L~~l~~~f~~~l~~~~~-l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~~~~~~~~~~ig~ 98 (368)
T 1xcg_A 20 IDRQEVINELFVTEASHLRTLRVLDLIFYQRMKKENL-MPREELARLFPNLPELIEIHNSWCEAMKKLREEGPIIKEISD 98 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTS-SCHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHTCSSCCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCCcCcHHH
Confidence 4678899999999999999999999999999998654 456899999999999999999999999999988877789999
Q ss_pred HHHhhhh----cccchhHHHHHhhhccHHHHHHHHHHh-cChhhHHHHHHhcccccccccccccccccccccchHhHHHH
Q psy17173 288 CFEEFAE----DAEFDVYEKLLHNIVNQKSIEVLSMHV-TQPSILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEY 362 (1108)
Q Consensus 288 ~F~~~a~----~~~f~~Y~~Yc~N~~~~~a~~~l~~l~-~~~~~~~~~~~~~~~~~~~~~~~L~slLi~PvQRI~rY~LL 362 (1108)
||+++.. ...|++|..||+|+ +.|.+.+.++. +++.+..+++. ++..+.+.+++|.+||++|||||+||+||
T Consensus 99 ~f~~~~~~~~~~~~~~~Y~~Y~~~~--~~a~~~l~~~~~~~~~f~~fl~~-~~~~~~~~~l~L~~~Li~PvQRi~rY~LL 175 (368)
T 1xcg_A 99 LMLARFDGPAREELQQVAAQFCSYQ--SIALELIKTKQRKESRFQLFMQE-AESHPQCRRLQLRDLIISEMQRLTKYPLL 175 (368)
T ss_dssp HHHHHHSHHHHHHHHHHHHHHHTTH--HHHHHHHHHHHHHCHHHHHHHHH-HHTSGGGTTCCHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHccchhHHHHHHHHHHHHhhH--HHHHHHHHHHHhCCHHHHHHHHH-HHhChhhccCChHHHhhhHhhhhhhHHHH
Confidence 9988642 13489999999999 68999999887 47888877775 66777888999999999999999999999
Q ss_pred HHHHHhcCCCCc-hHHHHHHHHHHHHHHHHHHhhhhhhhcCcccccchhhhhhhHHHHHHHHHHHhhccCCCc-------
Q psy17173 363 IKIFHSLTDSSK-DKECLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKNVDGVDV------- 434 (1108)
Q Consensus 363 LkeLlK~Tp~~h-D~~~L~~A~~~~~~v~~~ine~~~~k~~~~~~~~~~e~~rk~~~~~kl~eiq~~I~g~~~------- 434 (1108)
|++|+||||++| ||.+|++|++.|+.++..||+. +++.++.+++.++|+.|++|.+
T Consensus 176 L~~llk~t~~~~~d~~~l~~A~~~~~~v~~~vN~~----------------~~~~e~~~~l~~i~~~l~~~~~~~~~~pl 239 (368)
T 1xcg_A 176 LESIIKHTEGGTSEHEKLCRARDQCREILKYVNEA----------------VKQTENRHRLEGYQKRLDATALERASNPL 239 (368)
T ss_dssp HHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHEECHHHHSCSCTT
T ss_pred HHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHhCcchhhhcccch
Confidence 999999999999 9999999999999999999987 6778888999999999988632
Q ss_pred ----ccccccccceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCcccc----ccccccCcceeEEEEEeeccC
Q psy17173 435 ----RDLRPYLEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTV----PINVVSSQYEFKCKEMYFLRK 506 (1108)
Q Consensus 435 ----~~l~~~~r~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~----~~~~~~~~~~y~~k~~i~l~~ 506 (1108)
.++..++|+||++|.+.+..++++. ++||+|||||+||+||++..+- .+ +...+.....|.++..+++.+
T Consensus 240 ~~~~~~l~~~~R~li~~G~l~~~~~~~~~-~~~~~fLF~d~Ll~~k~~~~k~-~~~~~~~~~~~~~~~~~~~~~~i~l~~ 317 (368)
T 1xcg_A 240 AAEFKSLDLTTRKMIHEGPLTWRISKDKT-LDLHVLLLEDLLVLLQKQDEKL-LLKCHSKTAVGSSDSKQTFSPVLKLNA 317 (368)
T ss_dssp TGGGGGCCGGGSCEEEEEEEEECCSSSCC-CEEEEEEESSEEEEEEECSSCE-ECCC-------------CCCSEEEGGG
T ss_pred hhhhhhcccccceEEeecceEeeecCCCe-eEEEEEcccccHHHhhcccccc-eeeeccccccCCCCcccCcCCceEccc
Confidence 2344467999999999865443333 6999999999999999864321 01 001122334788999999999
Q ss_pred eEEeecCCCccccccEEeecCC----CCeEEEEeCCHHHHHHHHHHHHHHHh
Q psy17173 507 VEINDYENTDDIKNAFEIAPRD----QPSIIIVTKSPEDKKSWFSDLIMVNT 554 (1108)
Q Consensus 507 ~~I~d~~d~~~~~~aF~I~~~~----~~~~~l~a~s~eeK~~Wm~~L~~l~~ 554 (1108)
+.|.+.. +.+++|.|.... ..+|+|+|+|+++|+.||++|.++..
T Consensus 318 ~~v~~~~---~~~~~f~i~~~~~~g~~~~~~l~a~s~~ek~~W~~~i~~ai~ 366 (368)
T 1xcg_A 318 VLIRSVA---TDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVR 366 (368)
T ss_dssp EEEEECS---SCSSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred eeeeccc---CCCceEEEEEecCCCCceEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 9998863 235788887532 35899999999999999999988754
No 13
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}
Probab=100.00 E-value=1e-45 Score=436.47 Aligned_cols=323 Identities=17% Similarity=0.207 Sum_probs=267.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHhHhhhccCHHHHHHHHHHHHHHHHHhhccCCCCCcchh
Q psy17173 208 LHYEQVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCLLGAVEDISEMSSDDHCIGS 287 (1108)
Q Consensus 208 ~sy~evi~ELi~TEr~Yv~~L~~ii~~f~~pl~~~~~l~~~~~i~~IFsNIeeI~~~~~~fL~~Le~~~~~~~~~~~IG~ 287 (1108)
..+++||+||++||++||++|+.++++|+.||..... .+++++..||+||++|+++|+.||..|+++.+.+...+.||+
T Consensus 62 ~kR~~vi~ELi~TE~~Yv~~L~~l~~~y~~~l~~~~~-l~~~~~~~iF~ni~~I~~~h~~fl~~L~~~~~~~~~~~~ig~ 140 (418)
T 3t06_A 62 IDRQEVINELFVTEASHLRTLRVLDLIFYQRMKKENL-MPREELARLFPNLPELIEIHNSWCEAMKKLREEGPIIKEISD 140 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTS-SCHHHHHHHSSSHHHHHHHHHHHHHHHHHHGGGCSSCCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCHHHHHHHHccHHHHHHHHHHHHHHHHHHHhcCCCcCcHHH
Confidence 5778899999999999999999999999999997544 456899999999999999999999999999998877889999
Q ss_pred HHHhhhhc----ccchhHHHHHhhhccHHHHHHHHHHh-cChhhHHHHHHhcccccccccccccccccccccchHhHHHH
Q psy17173 288 CFEEFAED----AEFDVYEKLLHNIVNQKSIEVLSMHV-TQPSILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEY 362 (1108)
Q Consensus 288 ~F~~~a~~----~~f~~Y~~Yc~N~~~~~a~~~l~~l~-~~~~~~~~~~~~~~~~~~~~~~~L~slLi~PvQRI~rY~LL 362 (1108)
||+++... ..|++|..||+|+ +.+.+.+.++. +++.+..+++. ++..+.+.+++|.+||++|||||+||+||
T Consensus 141 ifl~~~~~~~~~~~~~~Y~~Y~~n~--~~a~~~l~~~~~~~~~f~~fl~~-~~~~~~~~~l~L~s~Li~PvQRi~rY~LL 217 (418)
T 3t06_A 141 LMLARFDGPAREELQQVAAQFCSYQ--SIALELIKTKQRKESRFQLFMQE-AESHPQCRRLQLRDLIISEMQRLTKYPLL 217 (418)
T ss_dssp HHHHHHSTHHHHHHHHHHHHHHHTH--HHHHHHHHHHHHHCHHHHHHHHH-HTTSGGGTTCCHHHHTTHHHHHHHHHHHH
T ss_pred HHHHhcchhhhHHHhhhhHHHhhhH--HHHHHHHHHHHhcCHHHHHHHHH-HHhCcccccCCHHHHHhhHHHHHHHHHHH
Confidence 99986432 1358999999999 69999999887 47777777764 66778888999999999999999999999
Q ss_pred HHHHHhcCCCCc-hHHHHHHHHHHHHHHHHHHhhhhhhhcCcccccchhhhhhhHHHHHHHHHHHhhccCCCc-------
Q psy17173 363 IKIFHSLTDSSK-DKECLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKNVDGVDV------- 434 (1108)
Q Consensus 363 LkeLlK~Tp~~h-D~~~L~~A~~~~~~v~~~ine~~~~k~~~~~~~~~~e~~rk~~~~~kl~eiq~~I~g~~~------- 434 (1108)
|++|+|+||++| ||..|++|++.|+.++..||+. +++.++.+++.++|+.|++|.+
T Consensus 218 L~~llk~t~~~~~d~~~L~~A~~~i~~v~~~iN~~----------------~~~~e~~~~l~~i~~~l~~~~~~~~~~~~ 281 (418)
T 3t06_A 218 LESIIKHTEGGTSEHEKLCRARDQCREILKYVNEA----------------VKQTENRHRLEGYQKRLDATALERASNPL 281 (418)
T ss_dssp HHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHSEECCTTSSCSCTT
T ss_pred HHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHhCccccccccccc
Confidence 999999999999 9999999999999999999987 6778888999999999998854
Q ss_pred ----ccccccccceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCcc---ccccccccCcceeEEEEEeeccCe
Q psy17173 435 ----RDLRPYLEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISV---TVPINVVSSQYEFKCKEMYFLRKV 507 (1108)
Q Consensus 435 ----~~l~~~~r~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~---~~~~~~~~~~~~y~~k~~i~l~~~ 507 (1108)
.++..++|+||++|.|.+..++++. ++||+|||+|+||+||++..+.. +.+...+.....|.++..+++.++
T Consensus 282 ~~~~~~l~~~~r~li~eG~l~~~~~~~~~-~~~~~fLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~k~~i~l~~~ 360 (418)
T 3t06_A 282 AAEFKSLDLTTRKMIHEGPLTWRISKDKT-LDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAV 360 (418)
T ss_dssp TTTTSSCCGGGSCEEEEEEEEECCBTTBC-CEEEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGE
T ss_pred chhhcccccccceeEEeceEEEEeCCCCe-EEEEEEecCCEEEEEEEcCCceEEeecccccccCCCcccccCCceechhc
Confidence 2334457999999999977655543 69999999999999998653211 001111234457889999999999
Q ss_pred EEeecCCCccccccEEeecCC----CCeEEEEeCCHHHHHHHHHHHHHHHh
Q psy17173 508 EINDYENTDDIKNAFEIAPRD----QPSIIIVTKSPEDKKSWFSDLIMVNT 554 (1108)
Q Consensus 508 ~I~d~~d~~~~~~aF~I~~~~----~~~~~l~a~s~eeK~~Wm~~L~~l~~ 554 (1108)
.|.+.+ +..++|.|.... ..+|+|.|.|+++|+.||++|.++..
T Consensus 361 ~v~~~~---~~~~~f~l~~~~~~~~~~~~~l~A~s~~ek~~W~~~I~~a~~ 408 (418)
T 3t06_A 361 LIRSVA---TDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVR 408 (418)
T ss_dssp EEEECS---SCSSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred eecccc---ccCceEEEEecCCCCCceEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 998664 345788888643 25899999999999999999987654
No 14
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=4.2e-46 Score=442.07 Aligned_cols=309 Identities=14% Similarity=0.199 Sum_probs=259.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------CCCCCHHhHhhhccCHHHHHHHHHHHHHHHHHhhccC
Q psy17173 208 LHYEQVVNDFVAEEKLFIRELKLILKIFYEELNKI--------TPLKEIKEVHSLFEIIEEIYNLTVCLLGAVEDISEMS 279 (1108)
Q Consensus 208 ~sy~evi~ELi~TEr~Yv~~L~~ii~~f~~pl~~~--------~~l~~~~~i~~IFsNIeeI~~~~~~fL~~Le~~~~~~ 279 (1108)
.-++.||+||++||++||++|+.|+++|+.||... ....+.+++..||+||++|+++|+.||.+|+++.+.|
T Consensus 21 ~kr~~ii~ELl~TE~~Yv~~L~~l~~~f~~pl~~~l~~~~~~~~~~l~~~~~~~iF~ni~~I~~~h~~fL~~L~~~~~~~ 100 (434)
T 3mpx_A 21 SRALVIAQELLSSEKAYVEMLQHLNLDFHGAVMRALDDMDHEGRDTLAREELRQGLSELPAIHDLHQGILEELEERLSNW 100 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhc
Confidence 35567999999999999999999999999999753 2233458999999999999999999999999999998
Q ss_pred CCCCcchhHHHhhhhcccchhHHHHHhhhccHHHHHHHHHHh-cChhhHHHHHHhcccccccccccccccccccccchHh
Q psy17173 280 SDDHCIGSCFEEFAEDAEFDVYEKLLHNIVNQKSIEVLSMHV-TQPSILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNL 358 (1108)
Q Consensus 280 ~~~~~IG~~F~~~a~~~~f~~Y~~Yc~N~~~~~a~~~l~~l~-~~~~~~~~~~~~~~~~~~~~~~~L~slLi~PvQRI~r 358 (1108)
...+.||+||++++ ..|++|..||+|+ +.+...+.++. +++.+..+++. ++..+.+.+++|.+||++|||||+|
T Consensus 101 ~~~~~ig~ifl~~~--~~~~~Y~~Y~~n~--~~a~~~l~~~~~~~~~f~~~l~~-~~~~~~~~~l~L~s~Li~PvQRi~r 175 (434)
T 3mpx_A 101 ESQQKVADVFLARE--QGFDHHATHILQF--DRYLGLLSENCLHSPRLAAAVRE-FEQSVQGGSQTAKHRLLRVVQRLFQ 175 (434)
T ss_dssp TTCCCCTHHHHTTT--TTHHHHHHHHHHH--HHHHHHHHHHHTTCHHHHHHHHH-HHTC------CHHHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHhh--HHHHHHHHHHHhH--HHHHHHHHHHHHhChHHHHHHHH-HHcCcccCCCCHHHHHhhhHHhhhH
Confidence 88899999999986 4589999999999 69999999965 56777777765 5556677889999999999999999
Q ss_pred HHHHHHHHHhcCCCCc-hHHHHHHHHHHHHHHHHHHhhhhhhhcCcccccchhhhhhhHHHHHHHHHHHhhccCCCcccc
Q psy17173 359 YFEYIKIFHSLTDSSK-DKECLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKNVDGVDVRDL 437 (1108)
Q Consensus 359 Y~LLLkeLlK~Tp~~h-D~~~L~~A~~~~~~v~~~ine~~~~k~~~~~~~~~~e~~rk~~~~~kl~eiq~~I~g~~~~~l 437 (1108)
|+|||++|+|+||++| ||..|++|++.|+.++..+|+. +++.++.+++.++|..|+||. ++
T Consensus 176 Y~LLL~~llk~t~~~~~d~~~l~~Al~~i~~v~~~iN~~----------------~~~~e~~~~l~~l~~~i~~~~--~l 237 (434)
T 3mpx_A 176 YQVLLTDYLNNLCPDSAEYDNTQGALSLISKVTDRANDS----------------MEQGENLQKLVHIEHSVRGQG--DL 237 (434)
T ss_dssp HHHHHHHHHTTSCTTSHHHHHHHHHHHHHHHHHHHHHHH----------------CTTHHHHHHHHHHHHHEETCC--CC
T ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHhcCcc--cc
Confidence 9999999999999999 9999999999999999999987 467778889999999999984 56
Q ss_pred cccccceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCcc
Q psy17173 438 RPYLEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDD 517 (1108)
Q Consensus 438 ~~~~r~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~ 517 (1108)
..++|.||++|.+.++.+++. ++|++|||||+||+||+.+++ .|.+++.+++.++.|.+..++ +
T Consensus 238 ~~~~r~li~~g~l~~~~~~~~--~~r~~fLF~d~Ll~~k~~~~~-------------~y~~k~~i~L~~l~v~~~~~~-~ 301 (434)
T 3mpx_A 238 LQPGREFLKEGTLMKVTGKNR--RPRHLFLMNDVLLYTYPQKDG-------------KYRLKNTLAVANMKVSRPVME-K 301 (434)
T ss_dssp CCTTCCEEECCEEEEEETTEE--EEEEEEEESSEEEEEEECTTS-------------CEEEEEEEEC-----CCCCCT-T
T ss_pred ccCCcceEecceEEEEeCCCc--eEEEEEEECCEEEEEEecCCC-------------eEEEEEEEEcCCcEEEecCCC-C
Confidence 677899999999998876543 599999999999999987542 699999999999999876554 6
Q ss_pred ccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHHhhH
Q psy17173 518 IKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVNTKS 556 (1108)
Q Consensus 518 ~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~~~s 556 (1108)
.+++|.|.+. +.+|+|+|.|+++|+.||++|.++....
T Consensus 302 ~~~~f~i~~~-~~~~~l~a~s~~ek~~W~~~i~~ai~e~ 339 (434)
T 3mpx_A 302 VPYALKIETS-ESCLMLSASSCAERDEWYGCLSRALPED 339 (434)
T ss_dssp SCSEEEEECS-SCEEEEECSSHHHHHHHHHHHHHC----
T ss_pred CCeeEEEecC-CeEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 7899999765 4589999999999999999999876543
No 15
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1
Probab=100.00 E-value=3e-45 Score=426.75 Aligned_cols=327 Identities=17% Similarity=0.261 Sum_probs=259.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHhHhhhccCHHHHHHHHHHHHHHHHHhhccCCCC-----
Q psy17173 208 LHYEQVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCLLGAVEDISEMSSDD----- 282 (1108)
Q Consensus 208 ~sy~evi~ELi~TEr~Yv~~L~~ii~~f~~pl~~~~~l~~~~~i~~IFsNIeeI~~~~~~fL~~Le~~~~~~~~~----- 282 (1108)
..+++||+||++||++||++|+.++++|+.||..... .+++++..||+||++|+++|+.||.+|+++...|++.
T Consensus 10 ~kr~~vi~Eli~TE~~Yv~~L~~l~~~y~~pl~~~~~-l~~~~~~~iF~ni~~I~~~h~~fl~~L~~~~~~~~~~~~~~~ 88 (377)
T 1foe_A 10 DKLRKVICELLETERTYVKDLNCLMERYLKPLQKETF-LTQDELDVLFGNLTEMVEFQVEFLKTLEDGVRLVPDLEKLEK 88 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTSSS-SCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTTSSCGGGCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCcchhhhh
Confidence 3567899999999999999999999999999987644 4568999999999999999999999999999876541
Q ss_pred --------CcchhHHHhhhhcccchhHHHHHhhhccHHHHHHHHHHhcChhhHHHHHHhccccccccccccccccccccc
Q psy17173 283 --------HCIGSCFEEFAEDAEFDVYEKLLHNIVNQKSIEVLSMHVTQPSILNTLQFAGYGFKECVKYYLPNLLMSPLY 354 (1108)
Q Consensus 283 --------~~IG~~F~~~a~~~~f~~Y~~Yc~N~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~slLi~PvQ 354 (1108)
..||+||++++ ..|++|..||+|+ +.+.+.+.++.+++.+..+++.+.. +.+.+++|.+||++|||
T Consensus 89 ~~~~~~~~~~ig~~f~~~~--~~f~~Y~~Y~~n~--~~a~~~l~~~~~~~~f~~fl~~~~~--~~~~~l~L~s~Li~PvQ 162 (377)
T 1foe_A 89 VDQFKKVLFSLGGSFLYYA--DRFKLYSAFCASH--TKVPKVLVKAKTDTAFKAFLDAQNP--RQQHSSTLESYLIKPIQ 162 (377)
T ss_dssp GGGGHHHHHHHHHHHHHHT--TGGGGHHHHHHHT--TTHHHHHTTTTTCHHHHHHHHHHCT--TCCGGGSHHHHTTHHHH
T ss_pred hhhhhhHHHHHHHHHHHHH--HHHHHHHHHHHhH--HHHHHHHHHHhcCHHHHHHHHHHhh--ccccCcCHHHHhccchh
Confidence 36999999986 4689999999999 5888999988888999988886433 33678999999999999
Q ss_pred chHhHHHHHHHHHhcCCCCc-hHHHHHHHHHHHHHHHHHHhhhhhhhcCcccccchhhhhhhHHHHHHHH-HHHhhccCC
Q psy17173 355 HCNLYFEYIKIFHSLTDSSK-DKECLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIH-ELKKNVDGV 432 (1108)
Q Consensus 355 RI~rY~LLLkeLlK~Tp~~h-D~~~L~~A~~~~~~v~~~ine~~~~k~~~~~~~~~~e~~rk~~~~~kl~-eiq~~I~g~ 432 (1108)
||+||+|||++|+||||++| |+.+|+.|++.|++++..||+. +|+.++..++. .+...+.|+
T Consensus 163 Ri~rY~LLL~~llk~t~~~~~d~~~l~~Al~~~~~v~~~iNe~----------------~r~~e~~~~~~~~l~~~~~~~ 226 (377)
T 1foe_A 163 RVLKYPLLLRELFALTDAESEEHYHLDVAIKTMNKVASHINEM----------------QKIHEEFGAVFDQLIAEQTGE 226 (377)
T ss_dssp HHTTHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHTTCSSC
T ss_pred hhccHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999 9999999999999999999987 45555555543 344455555
Q ss_pred Cc--ccccccccceeeeeeeEEEeC-----CCCcceeEEEEeecCeEEEEec-CCCCccccccc----cccCcceeEEEE
Q psy17173 433 DV--RDLRPYLEEFYREDTLMKYDG-----KSNRLTERKVYFFDGVLILCKS-NKKISVTVPIN----VVSSQYEFKCKE 500 (1108)
Q Consensus 433 ~~--~~l~~~~r~li~eG~L~k~~~-----~~~~~~er~~FLF~d~Ll~~k~-~~~~~~~~~~~----~~~~~~~y~~k~ 500 (1108)
.+ .++ ..++++++|.+..+.. +.++.++|++|||+|+||+|.+ .++.+...++. ....+..|+|++
T Consensus 227 ~~~~~~~--~~g~ll~~~~~~~~~~~~~~~~~~k~~~~~~fLF~d~lll~~k~~~~~k~~~~~~~~~s~~~~~~~y~~k~ 304 (377)
T 1foe_A 227 KKEVADL--SMGDLLLHTSVIWLNPPASLGKWKKEPELAAFVFKTAVVLVYKDGSKQKKKLVGSHRLSIYEEWDPFRFRH 304 (377)
T ss_dssp SCSSCCC--CGGGEEEEEEEEESSCCHHHHTTCSSCEEEEEEETTEEEEEECCCCCSCCSSCCCTTTTCSSCSCSCCCEE
T ss_pred ccccccc--CccceeeecceeeccCchhhccccccceEEEEEcCCeEEEEeccccccccccccccccccccCCCceeEee
Confidence 33 222 2468999999986532 2223369999999998887644 22211111111 112345899999
Q ss_pred EeeccCeEEeecCCCcccccc-EEeec-------CCCCeEEEEeCCHHHHHHHHHHHHHHHhhHHHH
Q psy17173 501 MYFLRKVEINDYENTDDIKNA-FEIAP-------RDQPSIIIVTKSPEDKKSWFSDLIMVNTKSMLE 559 (1108)
Q Consensus 501 ~i~l~~~~I~d~~d~~~~~~a-F~I~~-------~~~~~~~l~a~s~eeK~~Wm~~L~~l~~~s~l~ 559 (1108)
.+++.++.|.+.+|++...++ |+|.. +.+.+|+|+|+|+++|+.||++|.++.....-+
T Consensus 305 ~i~l~~~~v~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~l~A~s~~eK~~W~~~i~~~i~~~~~~ 371 (377)
T 1foe_A 305 MIPTEALQVRALPSADAEANAVCEIVHVKSESEGRPERVFHLCCSSPESRKDFLKSVHSILRDKHRR 371 (377)
T ss_dssp EEEGGGEEEECCCCTTTTSCCEEEEEECCBTGGGBCCEEEEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eccccceEEEecCCCccchhhHHHHHhccccccCCCcceEEEEeCCHHHHHHHHHHHHHHhhHHhhh
Confidence 999999999999988776665 77862 224589999999999999999999887665433
No 16
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A
Probab=100.00 E-value=4.3e-45 Score=425.45 Aligned_cols=320 Identities=13% Similarity=0.222 Sum_probs=256.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHhHhhhccCHHHHHHHHHHHHHHHHHhhccCCC-CCcch
Q psy17173 208 LHYEQVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCLLGAVEDISEMSSD-DHCIG 286 (1108)
Q Consensus 208 ~sy~evi~ELi~TEr~Yv~~L~~ii~~f~~pl~~~~~l~~~~~i~~IFsNIeeI~~~~~~fL~~Le~~~~~~~~-~~~IG 286 (1108)
..+++||+||++||++||++|+.++++|+.||.....+ +++++..||+||++|+++|+.||..|+++...++. .+.||
T Consensus 26 ~kR~~vi~ELi~TE~~Yv~~L~~l~~~y~~~l~~~~~l-~~~~~~~iF~ni~~I~~~h~~fl~~L~~~~~~~~~~~~~ig 104 (377)
T 3p6a_A 26 VKRQEVISELLVTEAAHVRMLRVLHDLFFQPMAECLFF-PLEELQNIFPSLDELIEVHSLFLDRLMKRRQESGYLIEEIG 104 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTSS-CHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHC--CCCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC-CHHHHHHHHccHHHHHHHHHHHHHHHHHHHhccCCCCCcHH
Confidence 46788999999999999999999999999999986544 45899999999999999999999999998877644 67999
Q ss_pred hHHHhhhhcc----cchhHHHHHhhhccHHHHHHHHHHh-cChhhHHHHHHhcccccccccccccccccccccchHhHHH
Q psy17173 287 SCFEEFAEDA----EFDVYEKLLHNIVNQKSIEVLSMHV-TQPSILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFE 361 (1108)
Q Consensus 287 ~~F~~~a~~~----~f~~Y~~Yc~N~~~~~a~~~l~~l~-~~~~~~~~~~~~~~~~~~~~~~~L~slLi~PvQRI~rY~L 361 (1108)
+||++++... .+++|..||+|+ +.+.+.+.++. +++.+..+++. ++..+.+.+++|.+||++|||||+||+|
T Consensus 105 ~~fl~~~~~~~~~~~~~~Y~~Y~~n~--~~a~~~l~~~~~~~~~f~~~l~~-~~~~~~~~~l~L~~~Li~PvQRi~rY~L 181 (377)
T 3p6a_A 105 DVLLARFDGAEGSWFQKISSRFCSRQ--SFALEQLKAKQRKDPRFCAFVQE-AESRPRCRRLQLKDMIPTEMQRLTKYPL 181 (377)
T ss_dssp HHHHHHHSHHHHHHHHHHHHHHHHTH--HHHHHHHHHHHHHCHHHHHHHHH-HHTSGGGTTCCHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHhcchhhHHHHHHHHHHHHhH--HHHHHHHHHHHhcCHHHHHHHHH-HHhCcccCCCCHHHHHHHHHHHhhhHHH
Confidence 9999886431 248999999999 69999999866 57777777765 6677888899999999999999999999
Q ss_pred HHHHHHhcCCCCc-hHHHHHHHHHHHHHHHHHHhhhhhhhcCcccccchhhhhhhHHHHHHHHHHHhhcc----------
Q psy17173 362 YIKIFHSLTDSSK-DKECLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKNVD---------- 430 (1108)
Q Consensus 362 LLkeLlK~Tp~~h-D~~~L~~A~~~~~~v~~~ine~~~~k~~~~~~~~~~e~~rk~~~~~kl~eiq~~I~---------- 430 (1108)
||++|+|+||+ | |+.+|++|++.|+.++..||+. +++.++.+++.++|+.|+
T Consensus 182 LL~~llk~t~~-~~d~~~l~~A~~~i~~v~~~in~~----------------~~~~e~~~~l~~iq~~l~~~~~~~~~~~ 244 (377)
T 3p6a_A 182 LLQSIGQNTEE-PTEREKVELAAECCREILHHVNQA----------------VRDMEDLLRLKDYQRRLDLSHLRQSSDP 244 (377)
T ss_dssp HHHHHHHTCCS-HHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHEECHHHHHCCCG
T ss_pred HHHHHHhhCCC-cccHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHhcCcccccccccc
Confidence 99999999998 7 9999999999999999999987 688888999999998886
Q ss_pred ---CCCcccccccccceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCcccccccc----ccCcceeEEEEEee
Q psy17173 431 ---GVDVRDLRPYLEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINV----VSSQYEFKCKEMYF 503 (1108)
Q Consensus 431 ---g~~~~~l~~~~r~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~----~~~~~~y~~k~~i~ 503 (1108)
+|.+.++.. |+||++|.|....++++. ++||+|||||+||+||++..+- .++..+ .....+..+...++
T Consensus 245 ~~~~~~~l~~~~--r~li~eG~l~~~~~~~~~-~~~~~fLF~d~Ll~~k~k~~k~-~~k~~~~~~~~~~~~k~~~~~~i~ 320 (377)
T 3p6a_A 245 MLSEFKNLDITK--KKLVHEGPLTWRVTKDKA-VEVHVLLLDDLLLLLQRQDERL-LLKSHSRTLTPTPDGKTMLRPVLR 320 (377)
T ss_dssp GGSSSTTCCCTT--SCEEEEEEEEEESSSSCE-EEEEEEEESSEEEEEEEETTEE-ECCCCCCC---------CSCSEEE
T ss_pred hhhhhccccccc--ceEEEECCcEEEecCCCe-EEEEEEeeCCEEEEEEEcCcee-EEeecccccccCccccCCCCCeEe
Confidence 477766654 899999999876655543 7999999999999999775311 011000 00011111223588
Q ss_pred ccCeEEeecCCCccccccEEeecC--CCCeEEEEeCCHHHHHHHHHHHHHHHh
Q psy17173 504 LRKVEINDYENTDDIKNAFEIAPR--DQPSIIIVTKSPEDKKSWFSDLIMVNT 554 (1108)
Q Consensus 504 l~~~~I~d~~d~~~~~~aF~I~~~--~~~~~~l~a~s~eeK~~Wm~~L~~l~~ 554 (1108)
+.++.+.+..+.. ...|.|... +...|+|.|.|++||+.||++|.++..
T Consensus 321 l~~~~v~e~~~~~--~~~~~i~~~~~~~~~~~l~A~s~~ek~~W~~~I~~ai~ 371 (377)
T 3p6a_A 321 LTSAMTREVATDH--KAFYVLFTWDQEAQIYELVAQTVSERKNWCALITETAG 371 (377)
T ss_dssp GGGEEEEECTTCT--TEEEEEETTCTTCCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred chhhhcccccccc--ceeEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHH
Confidence 9999998844332 334444432 345899999999999999999987644
No 17
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Probab=100.00 E-value=3.5e-45 Score=427.30 Aligned_cols=326 Identities=13% Similarity=0.205 Sum_probs=260.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHhHhhhccCHHHHHHHHHHHHHHHHHhhccCC---CCCc
Q psy17173 208 LHYEQVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCLLGAVEDISEMSS---DDHC 284 (1108)
Q Consensus 208 ~sy~evi~ELi~TEr~Yv~~L~~ii~~f~~pl~~~~~l~~~~~i~~IFsNIeeI~~~~~~fL~~Le~~~~~~~---~~~~ 284 (1108)
..+++||+||++||++||++|+.++++|+.||..... .+++++..||+||++|+++| .||.+|++++..+. ..+.
T Consensus 23 ~kR~~vi~ELi~TE~~Yv~~L~~l~~~f~~~l~~~~~-l~~~~~~~iF~ni~~I~~~h-~fL~~l~~~~~~~~~~~~~~~ 100 (385)
T 1txd_A 23 IKRQEVINELFYTERAHVRTLKVLDQVFYQRVSREGI-LSPSELRKIFSNLEDILQLH-IGLNEQMKAVRKRNETSVIDQ 100 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTC-SCHHHHHHHHTTHHHHHHHH-HHHHHHHHHHHTTCTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCHHHHHHHhcCHHHHHHHH-HHHHHHHHHHHHhhcCCCccc
Confidence 4678899999999999999999999999999997554 44589999999999999999 99999999875432 3578
Q ss_pred chhHHHhhhhc---ccc-hhHHHHHhhhccHHHHHHHHHHh-cChhhHHHHHHhcccccccccccccccccccccchHhH
Q psy17173 285 IGSCFEEFAED---AEF-DVYEKLLHNIVNQKSIEVLSMHV-TQPSILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLY 359 (1108)
Q Consensus 285 IG~~F~~~a~~---~~f-~~Y~~Yc~N~~~~~a~~~l~~l~-~~~~~~~~~~~~~~~~~~~~~~~L~slLi~PvQRI~rY 359 (1108)
||+||++++.. ..| ++|..||+|+ +.|...+.++. +++.|..+++. ++..+.+.+++|.+||++|||||+||
T Consensus 101 ig~~fl~~~~~~~~~~f~~~Y~~Y~~n~--~~a~~~l~~~~~~~~~f~~fl~~-~~~~~~~~~l~L~~~Li~PvQRi~rY 177 (385)
T 1txd_A 101 IGEDLLTWFSGPGEEKLKHAAATFCSNQ--PFALEMIKSRQKKDSRFQTFVQD-AESNPLCRRLQLKDIIPTQMQRLTKY 177 (385)
T ss_dssp CHHHHHHHHSTHHHHHHHHHHHHHHHTH--HHHHHHHHHHHHHCHHHHHHHHH-HHHSGGGTTCCHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHccchhHHHHHHHHHHHHHch--HHHHHHHHHHHhcCHHHHHHHHH-HHhCccccCCChHHHhhhHHhHhhhH
Confidence 99999998642 245 8999999999 69999999876 57888887775 56667788999999999999999999
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhcCcccccchhhhhhhHHHHHHHHHHHhhccCC--Cc---
Q psy17173 360 FEYIKIFHSLTDSSKDKECLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKNVDGV--DV--- 434 (1108)
Q Consensus 360 ~LLLkeLlK~Tp~~hD~~~L~~A~~~~~~v~~~ine~~~~k~~~~~~~~~~e~~rk~~~~~kl~eiq~~I~g~--~~--- 434 (1108)
+|||++|+|+||+++|+.+|++|++.|+.++..||+. +++.++..+|.+||+.|++. .+
T Consensus 178 ~LLL~~llk~t~~~~d~~~l~~Al~~i~~v~~~iN~~----------------~~~~e~~~~l~~i~~~l~~~~~~~~~~ 241 (385)
T 1txd_A 178 PLLLDNIAKYTEWPTEREKVKKAADHCRQILNFVNQA----------------VKEAENKQRLEDYQRRLDTSSLKLSEY 241 (385)
T ss_dssp HHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHEECCCC-----
T ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHhhcchhcccccc
Confidence 9999999999999779999999999999999999987 67888889999999999742 11
Q ss_pred ------ccccccccceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccc----cccccCcceeEEEEEeec
Q psy17173 435 ------RDLRPYLEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVP----INVVSSQYEFKCKEMYFL 504 (1108)
Q Consensus 435 ------~~l~~~~r~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~----~~~~~~~~~y~~k~~i~l 504 (1108)
..+..++|+||++|.+.....+++. ++||+|||||+||+||++.++ ..++ ...+.....|.++..+++
T Consensus 242 p~~~~~~~l~~~~R~li~eG~l~~~~~~~~~-~~~~~fLF~d~Ll~~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~l 319 (385)
T 1txd_A 242 PNVEELRNLDLTKRKMIHEGPLVWKVNRDKT-IDLYTLLLEDILVLLQKQDDR-LVLRCHSKILASTADSKHTFSPVIKL 319 (385)
T ss_dssp --CHHHHTCCGGGSCEEEEEEEEEESSSSCB-CCEEEEEESSEEEEEEEETTE-EECCC-------------CCCSEEEG
T ss_pred cchhhhhhcccccceEEEECcEEEEcCCCCe-EEEEEEecCCeeEEEEecCCe-eEEeeccccccccCCCCcCCCCceec
Confidence 1233357999999999865444333 699999999999999986432 1111 011223457888999999
Q ss_pred cCeEEeecCCCccccccEEeecC--CCCeEEEEeCCHHHHHHHHHHHHHHHhhHHH
Q psy17173 505 RKVEINDYENTDDIKNAFEIAPR--DQPSIIIVTKSPEDKKSWFSDLIMVNTKSML 558 (1108)
Q Consensus 505 ~~~~I~d~~d~~~~~~aF~I~~~--~~~~~~l~a~s~eeK~~Wm~~L~~l~~~s~l 558 (1108)
.++.|.+..+. .++.|.|... +..+|+|+|+|+++|+.||++|.++..+-..
T Consensus 320 ~~~~v~~~~~d--~~~~f~i~~~~~~~~~~~l~a~s~~ek~~W~~~i~~~i~~~~~ 373 (385)
T 1txd_A 320 STVLVRQVATD--NKALFVISMSDNGAQIYELVAQTVSEKTVWQDLICRMAASVKE 373 (385)
T ss_dssp GGEEEEECCC---CCEEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccC--CceEEEEEEcCCCceEEEEEcCCHHHHHHHHHHHHHHHHhccC
Confidence 99999886432 2456666643 2458999999999999999999988665543
No 18
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A
Probab=100.00 E-value=2.9e-44 Score=434.73 Aligned_cols=318 Identities=13% Similarity=0.222 Sum_probs=256.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHhHhhhccCHHHHHHHHHHHHHHHHHhhccCCC-CCcch
Q psy17173 208 LHYEQVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCLLGAVEDISEMSSD-DHCIG 286 (1108)
Q Consensus 208 ~sy~evi~ELi~TEr~Yv~~L~~ii~~f~~pl~~~~~l~~~~~i~~IFsNIeeI~~~~~~fL~~Le~~~~~~~~-~~~IG 286 (1108)
..+++||+||++||++||++|+.|+++|+.||..... .+++++..||+||++|+++|+.||..|+++...+.. .+.||
T Consensus 179 ~kRq~vi~ELi~TE~~YV~~L~~l~~~y~~pl~~~~~-l~~~~~~~IF~nie~I~~~h~~fL~~L~~~~~~~~~~~~~Ig 257 (536)
T 3odw_A 179 VKRQEVISELLVTEAAHVRMLRVLHDLFFQPMAECLF-FPLEELQNIFPSLDELIEVHSLFLDRLMKRRQESGYLIEEIG 257 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTS-SCHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHTC---CCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCcccccHH
Confidence 4678899999999999999999999999999987544 456899999999999999999999999998876544 67999
Q ss_pred hHHHhhhhcc----cchhHHHHHhhhccHHHHHHHHHHh-cChhhHHHHHHhcccccccccccccccccccccchHhHHH
Q psy17173 287 SCFEEFAEDA----EFDVYEKLLHNIVNQKSIEVLSMHV-TQPSILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFE 361 (1108)
Q Consensus 287 ~~F~~~a~~~----~f~~Y~~Yc~N~~~~~a~~~l~~l~-~~~~~~~~~~~~~~~~~~~~~~~L~slLi~PvQRI~rY~L 361 (1108)
+||++++... .+++|..||+|+ +.+.+.+.++. +++.|..+++. ++..+.+.++.|.+||++|||||+||+|
T Consensus 258 difl~~~~~~~~~~f~~~Y~~Y~~n~--~~a~~~l~~~~~~~~~f~~fl~~-~~~~~~~~~l~L~s~Li~PvQRi~rY~L 334 (536)
T 3odw_A 258 DVLLARFDGAEGSWFQKISSRFCSRQ--SFALEQLKAKQRKDPRFCAFVQE-AESRPRCRRLQLKDMIPTEMQRLTKYPL 334 (536)
T ss_dssp HHHHHHHSHHHHHHHHHHHHHHHHTH--HHHHHHHHHHHHHCHHHHHHHHH-HTTSGGGTTCCHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHcchhhhHHHHHHHHHHHhhH--HHHHHHHHHHHhhCHHHHHHHHH-HhhCcccccCCHHHHHHHHHHHHHHHHH
Confidence 9999876431 238999999999 69999999866 56777777764 6777888899999999999999999999
Q ss_pred HHHHHHhcCCCCc-hHHHHHHHHHHHHHHHHHHhhhhhhhcCcccccchhhhhhhHHHHHHHHHHHhhccC---------
Q psy17173 362 YIKIFHSLTDSSK-DKECLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKNVDG--------- 431 (1108)
Q Consensus 362 LLkeLlK~Tp~~h-D~~~L~~A~~~~~~v~~~ine~~~~k~~~~~~~~~~e~~rk~~~~~kl~eiq~~I~g--------- 431 (1108)
||++|+|+||+ | ||.+|++|+..|+.++..||+. +++.++..+|.+||+.|++
T Consensus 335 LL~~LlK~T~~-~~d~~~L~~Al~~i~~v~~~iNe~----------------~r~~e~~~kL~~iq~~L~~~~~~~~~~~ 397 (536)
T 3odw_A 335 LLQSIGQNTEE-PTEREKVELAAECCREILHHVNQA----------------VRDMEDLLRLKDYQRRLDLSHLRQSSDP 397 (536)
T ss_dssp HHHHHHTTCCS-HHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHEECTTTTTC---
T ss_pred HHHHHHhcCCC-chhHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHhccccccccccc
Confidence 99999999998 7 9999999999999999999987 6788888999999988863
Q ss_pred ----CCcccccccccceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccc----cccCcceeEEEEEee
Q psy17173 432 ----VDVRDLRPYLEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPIN----VVSSQYEFKCKEMYF 503 (1108)
Q Consensus 432 ----~~~~~l~~~~r~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~----~~~~~~~y~~k~~i~ 503 (1108)
|.+.++. +|+||++|.|.+...+++. ++||+|||+|+||+||++..+ ..+... ......++.++..++
T Consensus 398 ~i~~~~~ldl~--~R~LI~eG~l~~~~~~~k~-~~r~~fLF~D~LL~~k~k~~k-y~~k~~~~~~~~~~d~k~~~~~~i~ 473 (536)
T 3odw_A 398 MLSEFKNLDIT--KKKLVHEGPLTWRVTKDKA-VEVHVLLLDDLLLLLQRQDER-LLLKSHSRTLTPTPDGKTMLRPVLR 473 (536)
T ss_dssp CCTTSSSCCCT--TSCEEEEEEEEEESCC----CEEEEEEESSEEEEEEEETTE-EECCCC------------CCCSEEE
T ss_pred chhhhcccccc--cceeeeecceEEEecCCCe-eEEEEEEcCCEEEEEEEcCCe-EEEeecccccccccccccccCceee
Confidence 6565555 5999999999877655543 699999999999999986541 111110 111222344555799
Q ss_pred ccCeEEeecCCCccccccEEeecC---CCCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17173 504 LRKVEINDYENTDDIKNAFEIAPR---DQPSIIIVTKSPEDKKSWFSDLIMVN 553 (1108)
Q Consensus 504 l~~~~I~d~~d~~~~~~aF~I~~~---~~~~~~l~a~s~eeK~~Wm~~L~~l~ 553 (1108)
+.++.|.+..+. .++|.+... +...|+|.|.|.+||+.||++|.++.
T Consensus 474 L~~l~v~e~~~d---~~~ffli~~~~~~~~~~~L~A~S~eEK~~W~~~I~~aI 523 (536)
T 3odw_A 474 LTSAMTREVATD---HKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITETA 523 (536)
T ss_dssp GGGEEEEECTTC---TTEEEEEEC---CCCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cccceeeccccc---CCceEEEecCCCCceEEEEECCCHHHHHHHHHHHHHHH
Confidence 999999885433 356666543 45689999999999999999997754
No 19
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=100.00 E-value=3.1e-44 Score=440.53 Aligned_cols=306 Identities=16% Similarity=0.264 Sum_probs=261.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHhHhhhccCHHHHHHHHHHHHHHHHHhhccCCCCCcchh
Q psy17173 208 LHYEQVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCLLGAVEDISEMSSDDHCIGS 287 (1108)
Q Consensus 208 ~sy~evi~ELi~TEr~Yv~~L~~ii~~f~~pl~~~~~l~~~~~i~~IFsNIeeI~~~~~~fL~~Le~~~~~~~~~~~IG~ 287 (1108)
..+++||+||++||++||++|+.++++|+.||.. ..+++++..||+||++|+++|+.||.+|+++...|. .+.||+
T Consensus 196 ~kR~~vi~ELi~TE~~Yv~~L~~l~~~y~~~L~~---~l~~~~~~~iF~ni~~I~~~h~~fL~~L~~~~~~~~-~~~ig~ 271 (587)
T 3ky9_A 196 DKRCCCLREIQQTEEKYTDTLGSIQQHFLKPLQR---FLKPQDIEIIFINIEDLLRVHTHFLKEMKEALGTPG-AANLYQ 271 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHT---TSCTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHSST-TCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCHHHHHHHHhcHHHHHHHHHHHHHHHHHHHhccC-ccHHHH
Confidence 4578899999999999999999999999999985 334589999999999999999999999999999874 489999
Q ss_pred HHHhhhhcccchhHHHHHhhhccHHHHHHHHHHhc-ChhhHHHHHHhcccccccccccccccccccccchHhHHHHHHHH
Q psy17173 288 CFEEFAEDAEFDVYEKLLHNIVNQKSIEVLSMHVT-QPSILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYIKIF 366 (1108)
Q Consensus 288 ~F~~~a~~~~f~~Y~~Yc~N~~~~~a~~~l~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~slLi~PvQRI~rY~LLLkeL 366 (1108)
||++++ ..|++|..||+|+ +.+...+.++.+ ++.+..+++. ++..+.+.+++|.+||++|||||+||+|||++|
T Consensus 272 if~~~~--~~f~~Y~~Y~~n~--~~a~~~l~~~~~~~~~f~~~l~~-~~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~L 346 (587)
T 3ky9_A 272 VFIKYK--ERFLVYGRYCSQV--ESASKHLDRVAAAREDVQMKLEE-CSQRANNGRFTLRDLLMVPMQRVLKYHLLLQEL 346 (587)
T ss_dssp HHHHTT--TGGGHHHHHHHHH--HHHHHHHHHHHHTCHHHHTTTTH-HHHHHHSSSCCHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHH--HhcchHHHHHhCh--HHHHHHHHHHHhcCHHHHHHHHH-HHhccccCCCCHHHHHhHHHHHHHHHHHHHHHH
Confidence 999986 4589999999999 699999999875 4666655553 455566778999999999999999999999999
Q ss_pred HhcCCCCc-hHHHHHHHHHHHHHHHHHHhhhhhhhcCcccccchhhhhhhHHHHHHHHHHHhhccCCCccccccccccee
Q psy17173 367 HSLTDSSK-DKECLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKNVDGVDVRDLRPYLEEFY 445 (1108)
Q Consensus 367 lK~Tp~~h-D~~~L~~A~~~~~~v~~~ine~~~~k~~~~~~~~~~e~~rk~~~~~kl~eiq~~I~g~~~~~l~~~~r~li 445 (1108)
+|+|| +| ||.+|++|++.|+.++..||+. +++.++..++.+||+.|+||++. +..+ ++++
T Consensus 347 lk~T~-~~~d~~~L~~Al~~i~~v~~~iNe~----------------~r~~e~~~~l~~lq~~i~~~~~~-l~~~-grll 407 (587)
T 3ky9_A 347 VKHTQ-EAMEKENLRLALDAMRDLAQCVNEV----------------KRDNETLRQITNFQLSIENLDQS-LAHY-GRPK 407 (587)
T ss_dssp HHTCC-CHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHEETCCSC-GGGG-CCEE
T ss_pred HhcCC-CchhHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHhhcCccc-hhhc-CceE
Confidence 99998 57 9999999999999999999987 67788889999999999999764 3332 4699
Q ss_pred eeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCc----ccccc
Q psy17173 446 REDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTD----DIKNA 521 (1108)
Q Consensus 446 ~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~----~~~~a 521 (1108)
++|.+.+....+++.++||+|||||+||+||+++. .|.++..+++.++.|.+..+++ ..+++
T Consensus 408 ~~G~l~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~--------------~y~~k~~i~L~~~~v~~~~~~~~~~~~~~~~ 473 (587)
T 3ky9_A 408 IDGELKITSVERRSKMDRYAFLLDKALLICKRRGD--------------SYDLKDFVNLHSFQVRDDSSGDRDNKKWSHM 473 (587)
T ss_dssp EEEEEEEECSSCCSCEEEEEEEETTEEEEEEEETT--------------EEEEEEEEEGGGEEEEEC-----CCCTTCEE
T ss_pred EEeeEEEEeccCCCcceEEEEEECCEEEEEEecCC--------------EEEeeeeechhhceeeecCCCCcccccccce
Confidence 99999987665444479999999999999998732 8999999999999999987653 36799
Q ss_pred EEeecCCC-CeEEEEeCCHHHHHHHHHHHHHHHhh
Q psy17173 522 FEIAPRDQ-PSIIIVTKSPEDKKSWFSDLIMVNTK 555 (1108)
Q Consensus 522 F~I~~~~~-~~~~l~a~s~eeK~~Wm~~L~~l~~~ 555 (1108)
|.|...++ .+|+|+|+|+++|+.||++|.++..+
T Consensus 474 f~i~~~~~~~~~~L~A~S~eeK~~Wi~~I~~ai~~ 508 (587)
T 3ky9_A 474 FLLIEDQGAQGYELFFKTRELKKKWMEQFEMAISN 508 (587)
T ss_dssp EEEEETTC---CEEEESSHHHHHHHHHHHHHHHHH
T ss_pred eEEEEcCCCceEEEEeCCHHHHHHHHHHHHHHhhh
Confidence 99998753 58999999999999999999887643
No 20
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A
Probab=100.00 E-value=1.9e-43 Score=407.57 Aligned_cols=302 Identities=20% Similarity=0.315 Sum_probs=244.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CCCH---HhHhhhccCHHHHHHHHH-HHHHHHHHhhccCCC
Q psy17173 208 LHYEQVVNDFVAEEKLFIRELKLILKIFYEELNKITP--LKEI---KEVHSLFEIIEEIYNLTV-CLLGAVEDISEMSSD 281 (1108)
Q Consensus 208 ~sy~evi~ELi~TEr~Yv~~L~~ii~~f~~pl~~~~~--l~~~---~~i~~IFsNIeeI~~~~~-~fL~~Le~~~~~~~~ 281 (1108)
..+++||+||++||++||++|+.|+++|+.||..... +.++ +++..|||||++|+++|. .||.+|+++.+.+
T Consensus 10 ~kR~~vi~ELl~TE~~Yv~~L~~l~~~y~~pl~~~~~~~~~p~~~~~~~~~iF~ni~~I~~~h~~~fl~~Le~~~~~~-- 87 (353)
T 1kz7_A 10 ILRRHVMNELLDTERAYVEELLCVLEGYAAEMDNPLMAHLISTGLQNKKNILFGNMEEIYHFHNRIFLRELESCIDCP-- 87 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGCTTTTTTSCHHHHHTHHHHHTTHHHHHHHHHHTHHHHHHTTTTCG--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCChhhhhhHHHHHhCHHHHHHHHHHHHHHHHHHHhcCH--
Confidence 4678899999999999999999999999999987642 2332 579999999999999996 7999999998764
Q ss_pred CCcchhHHHhhhhcccchhHHHHHhhhccHHHHHHHHHHhcChhhHHHHHHhcccccccccccccccccccccchHhHHH
Q psy17173 282 DHCIGSCFEEFAEDAEFDVYEKLLHNIVNQKSIEVLSMHVTQPSILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFE 361 (1108)
Q Consensus 282 ~~~IG~~F~~~a~~~~f~~Y~~Yc~N~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~slLi~PvQRI~rY~L 361 (1108)
..||+||++++ ..|++|..||+|+ +.+...+.++.++ .+...++. +.+.+++|.+||++|||||+||+|
T Consensus 88 -~~ig~~fl~~~--~~f~~Y~~Y~~n~--~~a~~~l~~~~~~-~f~~~~~~-----~~~~~l~L~~~Li~PvQRi~rY~L 156 (353)
T 1kz7_A 88 -ELVGRCFLERM--EEFQIYEKYCQNK--PRSESLWRQCSDC-PFFQECQK-----KLDHKLSLDSYLLKPVQRITKYQL 156 (353)
T ss_dssp -GGHHHHHHTTT--TGGGHHHHHHHHH--HHHHHHHHHHTTC-HHHHHHHH-----HHTCSSCHHHHHTHHHHHHHHHHH
T ss_pred -HHHHHHHHHhh--HHHHHHHHHHhCh--HHHHHHHHHhhcc-hHHHHHHH-----hcCCCCCHHHHHHHHHHHHHHHHH
Confidence 67999999986 4689999999999 6888888877654 33333332 235679999999999999999999
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhcCcccccchhhhhhhHHHHHHHHHHHhhccCCCcccccccc
Q psy17173 362 YIKIFHSLTDSSKDKECLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKNVDGVDVRDLRPYL 441 (1108)
Q Consensus 362 LLkeLlK~Tp~~hD~~~L~~A~~~~~~v~~~ine~~~~k~~~~~~~~~~e~~rk~~~~~kl~eiq~~I~g~~~~~l~~~~ 441 (1108)
||++|+|+||+.+|+.+|++|++.|+.++..||+. ++ +..|+||++ ++.. .
T Consensus 157 LL~~llk~t~~~~d~~~L~~Al~~i~~v~~~iN~~----------------~~-----------~~~i~~~~~-~L~~-~ 207 (353)
T 1kz7_A 157 LLKEMLKYSKHCEGAEDLQEALSSILGILKAVNDS----------------MH-----------LIAITGYDG-NLGD-L 207 (353)
T ss_dssp HHHHHHHTCTTSTTHHHHHHHHHHHHHHHHHHHHH----------------HH-----------HTTEESCCS-CGGG-G
T ss_pred HHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHHH----------------HH-----------HHHHhCCCC-ChhH-h
Confidence 99999999996449999999999999999999986 22 235789987 3433 4
Q ss_pred cceeeeeeeEEEeCC--C---------CcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEe
Q psy17173 442 EEFYREDTLMKYDGK--S---------NRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEIN 510 (1108)
Q Consensus 442 r~li~eG~L~k~~~~--~---------~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~ 510 (1108)
|+||++|.+.++.+. + .+.++||+|||||+||+||+++... .+......|.++..+++.++.|.
T Consensus 208 g~ll~~g~l~~~~~~~~g~~~~k~~~~~k~~~r~~fLF~d~Ll~~k~~~~~~-----~~~~~~~~y~~k~~i~l~~~~v~ 282 (353)
T 1kz7_A 208 GKLLMQGSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVLFCKKREENG-----EGYEKAPSYSYKQSLNMTAVGIT 282 (353)
T ss_dssp CCEEEEEEEEEEECCCCC-----CCCSSSCEEEEEEEESSEEEEEEEECCCC-----SSCCCSCEEEEEEEEEGGGEEEE
T ss_pred hhhheecceEEEecCccccchhhhhhccCcceeEEEEECCEEEEEEeccccc-----cCCCCCCeEEEEEEeEcccceee
Confidence 679999999876432 1 1236999999999999999875311 01123358999999999999998
Q ss_pred ecCCCccccccEEeecCC-CCeEEEEeCCHHHHHHHHHHHHHHHhhHHH
Q psy17173 511 DYENTDDIKNAFEIAPRD-QPSIIIVTKSPEDKKSWFSDLIMVNTKSML 558 (1108)
Q Consensus 511 d~~d~~~~~~aF~I~~~~-~~~~~l~a~s~eeK~~Wm~~L~~l~~~s~l 558 (1108)
+..+++ .++|+|...+ ..+|+|+|+|+++|+.|+++|.++..+..-
T Consensus 283 e~~~~~--~~~F~i~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~~~~ 329 (353)
T 1kz7_A 283 ENVKGD--TKKFEIWYNAREEVYIIQAPTPEIKAAWVNAIRKVLTSQLQ 329 (353)
T ss_dssp CCBTTB--TTEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred EcCCCC--CceEEEEECCCCcEEEEECCCHHHHHHHHHHHHHHHHHHHH
Confidence 876553 7899998754 458999999999999999999988555443
No 21
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.4e-42 Score=400.39 Aligned_cols=296 Identities=17% Similarity=0.227 Sum_probs=237.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-CHHhHhhhccCHHHHHHHHHH-HHHHHHHhhccCCCCCcch
Q psy17173 209 HYEQVVNDFVAEEKLFIRELKLILKIFYEELNKITPLK-EIKEVHSLFEIIEEIYNLTVC-LLGAVEDISEMSSDDHCIG 286 (1108)
Q Consensus 209 sy~evi~ELi~TEr~Yv~~L~~ii~~f~~pl~~~~~l~-~~~~i~~IFsNIeeI~~~~~~-fL~~Le~~~~~~~~~~~IG 286 (1108)
-+++||+||++||++||++|+.++++|+.||....... -.+++..||+||++|+++|+. ||.+|+++.+.+ +.||
T Consensus 12 kR~~vi~ELi~TE~~Yv~~L~~l~~~y~~~l~~~~~p~~l~~~~~~iF~ni~~I~~~h~~~fl~~L~~~~~~~---~~ig 88 (354)
T 2rgn_B 12 RSMYVLSELVETEKMYVDDLGQIVEGYMATMAAQGVPESLRGRDRIVFGNIQQIYEWHRDYFLQELQRCLKDP---DWLA 88 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCCCSSSGGGHHHHHTTHHHHHHHHHHTHHHHHHHHHSCG---GGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHhhCHHHHHHHHHHHHHHHHHHHHcCH---HHHH
Confidence 45779999999999999999999999999998764211 125689999999999999999 999999998765 5799
Q ss_pred hHHHhhhhcccchhHHHHHhhhccHHHHHHHHHHhcChhhHHHHHHhcccccccccccccccccccccchHhHHHHHHHH
Q psy17173 287 SCFEEFAEDAEFDVYEKLLHNIVNQKSIEVLSMHVTQPSILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYIKIF 366 (1108)
Q Consensus 287 ~~F~~~a~~~~f~~Y~~Yc~N~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~slLi~PvQRI~rY~LLLkeL 366 (1108)
+||++++ ..|++|..||+|+ +.+...+.++.+ .+...++. +.+.+++|.+||++|||||+||+|||++|
T Consensus 89 ~~fl~~~--~~f~~Y~~Y~~n~--~~a~~~l~~~~~--~~f~~~~~-----~~~~~l~L~s~Li~PvQRi~rY~LLL~~l 157 (354)
T 2rgn_B 89 QLFIKHE--RRLHMYVVYCQNK--PKSEHVVSEFGD--SYFEELRQ-----QLGHRLQLNDLLIKPVQRIMKYQLLLKDF 157 (354)
T ss_dssp HHHHHTT--TTTHHHHHHHHTS--HHHHHHHTTTSH--HHHHHHHH-----HHCCSSCHHHHTTHHHHHHTSHHHHHHHH
T ss_pred HHHHHhH--HHHHHHHHHHhCc--HHHHHHHHHHHH--HHHHHHHH-----hcCCCCCHHHHhhhHHHHHhHHHHHHHHH
Confidence 9999986 4689999999999 588888877642 23333332 23567999999999999999999999999
Q ss_pred HhcCCCCc-hHHHHHHHHHHHHHHHHHHhhhhhhhcCcccccchhhhhhhHHHHHHHHHHHhhccCCCccccccccccee
Q psy17173 367 HSLTDSSK-DKECLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKNVDGVDVRDLRPYLEEFY 445 (1108)
Q Consensus 367 lK~Tp~~h-D~~~L~~A~~~~~~v~~~ine~~~~k~~~~~~~~~~e~~rk~~~~~kl~eiq~~I~g~~~~~l~~~~r~li 445 (1108)
+||||++| ||.+|++|++.|+.++..||+. ++ +..|+||++. +. ..++|+
T Consensus 158 lk~t~~~~~d~~~l~~Al~~i~~v~~~in~~----------------~~-----------~~~i~~~~~~-l~-~~~~Ll 208 (354)
T 2rgn_B 158 LKYYNRAGMDTADLEQAVEVMCFVPKRCNDM----------------MT-----------LGRLRGFEGK-LT-AQGKLL 208 (354)
T ss_dssp HHHTSSSCSCHHHHHHHHHHHHHHHHHHHHH----------------HH-----------GGGCBSCCSC-ST-TSCCEE
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHHHHHHHH----------------HH-----------HHHHhCChhh-hh-hhcccc
Confidence 99999999 9999999999999999999986 11 1357889873 22 246899
Q ss_pred eeeeeEEEeCC-----CCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCccccc
Q psy17173 446 REDTLMKYDGK-----SNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKN 520 (1108)
Q Consensus 446 ~eG~L~k~~~~-----~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~~ 520 (1108)
++|.+....+. .++.++||+|||||+||+||+.+.+. .+.+...|.+++.+++.++.|.+..++ ..+
T Consensus 209 ~~g~~~v~~~~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~~------~~~~~~~y~~k~~i~l~~~~v~~~~~~--~~~ 280 (354)
T 2rgn_B 209 GQDTFWVTEPEAGGLLSSRGRERRVFLFEQIIIFSEALGGGV------RGGTQPGYVYKNSIKVSCLGLEGNLQG--DPC 280 (354)
T ss_dssp EEEEEEEECC-------CCCCEEEEEEESSEEEEEEECC--------------CCEEEEEEEEGGGEEEEESGGG--CTT
T ss_pred ccceEEEEcCCcCccccCCCceEEEEEeCCcEEEEEeccCCC------CCCCCCceEEcceeeccceeeeeccCC--CCc
Confidence 99998766431 12236999999999999999876421 112235799999999999999876543 468
Q ss_pred cEEeecCC----CCeEEEEeCCHHHHHHHHHHHHHHHhh
Q psy17173 521 AFEIAPRD----QPSIIIVTKSPEDKKSWFSDLIMVNTK 555 (1108)
Q Consensus 521 aF~I~~~~----~~~~~l~a~s~eeK~~Wm~~L~~l~~~ 555 (1108)
+|.|...+ ..+|+|+|.|+++|+.|+++|.++..+
T Consensus 281 ~F~i~~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~ 319 (354)
T 2rgn_B 281 RFALTSRGPEGGIQRYVLQAADPAISQAWIKHVAQILES 319 (354)
T ss_dssp EEEEEEECSSSCEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred eEEEEecCCCCCceEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 99998642 358999999999999999999998544
No 22
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Probab=100.00 E-value=3.8e-42 Score=390.04 Aligned_cols=292 Identities=17% Similarity=0.331 Sum_probs=233.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCC--HHhHhhhccCHHHHHHHHHH-HHHHHHHhhccCCCCC
Q psy17173 208 LHYEQVVNDFVAEEKLFIRELKLILKIFYEELNKITP-LKE--IKEVHSLFEIIEEIYNLTVC-LLGAVEDISEMSSDDH 283 (1108)
Q Consensus 208 ~sy~evi~ELi~TEr~Yv~~L~~ii~~f~~pl~~~~~-l~~--~~~i~~IFsNIeeI~~~~~~-fL~~Le~~~~~~~~~~ 283 (1108)
..+++||+||++||++||++|+.++++|+.||..... ++. .+++..|||||++|+++|+. ||.+|+++...+ .
T Consensus 8 ~kR~~vi~El~~TE~~Yv~~L~~l~~~y~~~l~~~~~~l~~~~~~~~~~iF~ni~~i~~~h~~~fl~~L~~~~~~~---~ 84 (311)
T 1nty_A 8 RRKEFIMAELIQTEKAYVRDLRECMDTYLWEMTSGVEEIPPGIVNKELIIFGNMQEIYEFHNNIFLKELEKYEQLP---E 84 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCCTTTTTCHHHHHTTHHHHHHHHHHTHHHHHHHTTTCG---G
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhhHHHhhcCHHHHHHHHHHHHHHHHHHHHCCH---H
Confidence 3567799999999999999999999999999987432 221 14789999999999999996 999999987654 6
Q ss_pred cchhHHHhhhhcccchhHHHHHhhhccHHHHHHHHHHhcChhhHHHHHHhcccccccccccccccccccccchHhHHHHH
Q psy17173 284 CIGSCFEEFAEDAEFDVYEKLLHNIVNQKSIEVLSMHVTQPSILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYI 363 (1108)
Q Consensus 284 ~IG~~F~~~a~~~~f~~Y~~Yc~N~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~slLi~PvQRI~rY~LLL 363 (1108)
.||+||++++ +.|++|..||+|+ +.+...+.+.. ..+...++. . .+.+++|.+||++|||||+||+|||
T Consensus 85 ~ig~~f~~~~--~~~~~Y~~Y~~n~--~~a~~~l~~~~--~~f~~~~~~---~--~~~~l~L~~~Li~PvQRi~rY~LLL 153 (311)
T 1nty_A 85 DVGHCFVTWA--DKFQMYVTYCKNK--PDSTQLILEHA--GSYFDEIQQ---R--HGLANSISSYLIKPVQRITKYQLLL 153 (311)
T ss_dssp GTHHHHHHTT--TTTHHHHHHHHHH--HHHHHHHHHHT--TTHHHHHHH---H--HTCSSCHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHhHHHHHHHhCc--HHHHHHHHHHH--HHHHHHHHH---h--ccCCCCHHHHhhhhHHHHHHHHHHH
Confidence 7999999986 4689999999999 58888886653 233333332 1 1246999999999999999999999
Q ss_pred HHHHhcCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhcCcccccchhhhhhhHHHHHHHHHHHhhccCCCcccccccccc
Q psy17173 364 KIFHSLTDSSKDKECLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKNVDGVDVRDLRPYLEE 443 (1108)
Q Consensus 364 keLlK~Tp~~hD~~~L~~A~~~~~~v~~~ine~~~~k~~~~~~~~~~e~~rk~~~~~kl~eiq~~I~g~~~~~l~~~~r~ 443 (1108)
++|+||||++| .++++|++.|++++..+|+. ++ +..++|+++. +. ..++
T Consensus 154 ~~llk~t~~~h--~~l~~Al~~~~~v~~~~N~~----------------~~-----------~~~l~~~~~~-l~-~~g~ 202 (311)
T 1nty_A 154 KELLTCCEEGK--GEIKDGLEVMLSVPKRANDA----------------MH-----------LSMLEGFDEN-IE-SQGE 202 (311)
T ss_dssp HHHHHTSCTTC--TTHHHHHHHHHHHHHHHHHH----------------HH-----------HTTEESCCSC-SG-GGCC
T ss_pred HHHHHhCCCCc--HHHHHHHHHHHHHHHHHHHH----------------HH-----------HHHHhCCCCC-hH-hcCC
Confidence 99999999988 23889999999999999986 22 1246777652 22 2468
Q ss_pred eeeeeeeEEEeCC--CCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCcccccc
Q psy17173 444 FYREDTLMKYDGK--SNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNA 521 (1108)
Q Consensus 444 li~eG~L~k~~~~--~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~~a 521 (1108)
|+++|.+..+.++ .++.++||+|||+|+||+||+.+... ....|.+++.++++++.|.+..+++ .++
T Consensus 203 li~~~~~~~~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~~---------~~~~y~~k~~i~l~~~~v~e~~~~~--~~~ 271 (311)
T 1nty_A 203 LILQESFQVWDPKTLIRKGRERHLFLFEMSLVFSKEVKDSS---------GRSKYLYKSKLFTSELGVTEHVEGD--PCK 271 (311)
T ss_dssp EEEEEEEEEECSSSSSCCEEEEEEEEESSEEEEEEEEECTT---------CCEEEEEEEEEEGGGEEEECCCTTC--TTE
T ss_pred ceeeeeEEEEcCcccccccceeEEEeccCeEEEEEeeccCC---------CCceeEEeeeeeccceeeEEccCCC--Cce
Confidence 9999999887542 22337999999999999999865321 2348999999999999999877664 578
Q ss_pred EEeecC----CCCeEEEEeCCHHHHHHHHHHHHHHHhh
Q psy17173 522 FEIAPR----DQPSIIIVTKSPEDKKSWFSDLIMVNTK 555 (1108)
Q Consensus 522 F~I~~~----~~~~~~l~a~s~eeK~~Wm~~L~~l~~~ 555 (1108)
|.|... .+.+++|+|+|+++|+.|+++|.++...
T Consensus 272 F~i~~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~~i~e 309 (311)
T 1nty_A 272 FALWVGRTPTSDNKIVLKASSIENKQDWIKHIREVIQE 309 (311)
T ss_dssp EEEEESSSCCTTTCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCceEEEECCCHHHHHHHHHHHHHHHhh
Confidence 999852 2458999999999999999999887543
No 23
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=100.00 E-value=2.5e-44 Score=435.48 Aligned_cols=321 Identities=16% Similarity=0.218 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHhHhhhccCHHHHHHHHHHHHHHHHHhhccCCC---CCc
Q psy17173 208 LHYEQVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCLLGAVEDISEMSSD---DHC 284 (1108)
Q Consensus 208 ~sy~evi~ELi~TEr~Yv~~L~~ii~~f~~pl~~~~~l~~~~~i~~IFsNIeeI~~~~~~fL~~Le~~~~~~~~---~~~ 284 (1108)
..+++||+||++||++||++|+.++++|+.||.....+. ++++..||+||++|+++|+.||.+|+++...++. .+.
T Consensus 26 ~kR~~vi~ELi~TE~~Yv~~L~~l~~~y~~~l~~~~~l~-~~~~~~iF~ni~~i~~~h~~fl~~L~~~~~~~~~~~~~~~ 104 (510)
T 3jzy_A 26 RKRQGYIHELIQTEERYMADLQLVVEVFQKRMAESGFLT-EGEMALIFVNWKELIMSNTKLLKALRVRKKTGGEKMPVQM 104 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-HHHHHHHccCHHHHHHHHHHHHHHHHHHHhccCCCCchhh
Confidence 467889999999999999999999999999998765544 4899999999999999999999999999876543 468
Q ss_pred chhHHHhhhhcccchhHHHHHhhhccHHHHHHHHHHhcC-hhhHHHHHHhcccccccccccccccccccccchHhHHHHH
Q psy17173 285 IGSCFEEFAEDAEFDVYEKLLHNIVNQKSIEVLSMHVTQ-PSILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYI 363 (1108)
Q Consensus 285 IG~~F~~~a~~~~f~~Y~~Yc~N~~~~~a~~~l~~l~~~-~~~~~~~~~~~~~~~~~~~~~L~slLi~PvQRI~rY~LLL 363 (1108)
||+||++++ ..|++|..||+|+ +.+...+.++.++ +.+..+++. ++..+.+.+++|.+||++|||||+||+|||
T Consensus 105 ig~~f~~~~--~~~~~Y~~Y~~~~--~~a~~~l~~~~~~~~~f~~~~~~-~~~~~~~~~l~L~~~L~~PvQRi~rY~LLL 179 (510)
T 3jzy_A 105 IGDILAAEL--SHMQAYIRFCSCQ--LNGAALLQQKTDEDTDFKEFLKK-LASDPRCKGMPLSSFLLKPMQRITRYPLLI 179 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHh--HHHHHHHHHHHhH--HHHHHHHHHHHhcCHHHHHHHHH-HHhCccccCCCHHHHhChhhhhhcCcHHHH
Confidence 999999875 5589999999998 5888889887755 666666664 566677888999999999999999999999
Q ss_pred HHHHhcCCCCc-hHHHHHHHHHHHHHHHHHHhhhhhhhcCcccccchhhhhhhHHHHHHHHHHHhhccCCCcc--ccc--
Q psy17173 364 KIFHSLTDSSK-DKECLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKNVDGVDVR--DLR-- 438 (1108)
Q Consensus 364 keLlK~Tp~~h-D~~~L~~A~~~~~~v~~~ine~~~~k~~~~~~~~~~e~~rk~~~~~kl~eiq~~I~g~~~~--~l~-- 438 (1108)
++|+|+||++| ||.+|++|++.|+.++..||+. +++.++.+++.+||+.++ |.|. .+.
T Consensus 180 ~~llk~t~~~~~d~~~l~~A~~~i~~v~~~in~~----------------~~~~e~~~~l~~l~~~l~-~~g~~~~l~~~ 242 (510)
T 3jzy_A 180 RSILENTPESHADHSSLKLALERAEELCSQVNEG----------------VREKENSDRLEWIQAHVQ-CEGLAEQLIFN 242 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhcCCCCCccHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHhcc-ccCcccccccc
Confidence 99999999999 9999999999999999999987 566777789999999986 4441 111
Q ss_pred -----ccccceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCcccc---ccccccCcceeEE-EEEeeccCeEE
Q psy17173 439 -----PYLEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTV---PINVVSSQYEFKC-KEMYFLRKVEI 509 (1108)
Q Consensus 439 -----~~~r~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~---~~~~~~~~~~y~~-k~~i~l~~~~I 509 (1108)
.+.|+||++|.|.+.+++ ++||+|||+|+||+|++.+...... ..+....+..|++ +..++++++.|
T Consensus 243 ~~~~~~~~r~li~eG~l~~~~~~----~~~~~fLF~d~Ll~~k~~~~~~~~~g~~~~f~~~~~~~~~v~k~~i~l~~~~v 318 (510)
T 3jzy_A 243 SLTNCLGPRKLLHSGKLYKTKSN----KELHGFLFNDFLLLTYMVKQFAVSSGSEKLFSSKSNAQFKMYKTPIFLNEVLV 318 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccceeEEeceEEEcCCC----cEEEEEcccceeEEeeecccccccCCcccccCcccccceeEEcCceehhheEE
Confidence 245899999999876432 4999999999999999776531111 1122334456765 78999999999
Q ss_pred eecCCCccccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHHhhH
Q psy17173 510 NDYENTDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVNTKS 556 (1108)
Q Consensus 510 ~d~~d~~~~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~~~s 556 (1108)
.+.+|+.+.+++|+|.+. ..+|+|.|.|+++|+.||++|.++....
T Consensus 319 ~~~~d~~~~~~~F~i~~~-~~~~~l~a~s~~ek~~W~~~i~~ai~~~ 364 (510)
T 3jzy_A 319 KLPTDPSSDEPVFHISHI-DRVYTLRTDNINERTAWVQKIKAASEQY 364 (510)
T ss_dssp -----------------------------------------------
T ss_pred eccCCCCccccceeeecc-ceeEEeccCCHHHHHHHHHHHHHHHHHH
Confidence 999998889999999986 4589999999999999999998765543
No 24
>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR {Homo sapiens} SCOP: a.87.1.1
Probab=100.00 E-value=1.7e-33 Score=300.69 Aligned_cols=179 Identities=17% Similarity=0.323 Sum_probs=161.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHhHhhhccCHHHHHHHHHHHHHHHHHhhccCCCCCcchhH
Q psy17173 209 HYEQVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCLLGAVEDISEMSSDDHCIGSC 288 (1108)
Q Consensus 209 sy~evi~ELi~TEr~Yv~~L~~ii~~f~~pl~~~~~l~~~~~i~~IFsNIeeI~~~~~~fL~~Le~~~~~~~~~~~IG~~ 288 (1108)
.|++||+||++||++||++|+.++++|+.||.....++ ++++..|||||++|+++|+.||.+|+++...|+..+.||+|
T Consensus 13 ~R~~vi~ELi~TE~~Yv~~L~~l~~~y~~pl~~~~~l~-~~~~~~iF~ni~~i~~~h~~fl~~L~~~~~~~~~~~~ig~~ 91 (209)
T 1by1_A 13 YYNVVLQNILETENEYSKELQTVLSTYLRPLQTSEKLS-SANISYLMGNLEEICSFQQMLVQSLEECTKLPEAQQRVGGC 91 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSS-SSGGGTTHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-HHHHHHHHcCHHHHHHHHHHHHHHHHHHHcCCcchhhHHHH
Confidence 35679999999999999999999999999998765444 48999999999999999999999999999998778899999
Q ss_pred HHhhhhcccch-hHHHHHhhhccHHHHHHHHHHhcChhhHHHHHHhcccccccccccccccccccccchHhHHHHHHHHH
Q psy17173 289 FEEFAEDAEFD-VYEKLLHNIVNQKSIEVLSMHVTQPSILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYIKIFH 367 (1108)
Q Consensus 289 F~~~a~~~~f~-~Y~~Yc~N~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~slLi~PvQRI~rY~LLLkeLl 367 (1108)
|++++ ..|. +|..||+|+ +.+...+.++ ++.+..+++.+. .+.+.+++|.+||++|||||+||+|||++|+
T Consensus 92 f~~~~--~~f~~~Y~~Y~~n~--~~a~~~l~~~--~~~f~~fl~~~~--~~~~~~l~L~s~Li~PvQRi~rY~LLL~~Ll 163 (209)
T 1by1_A 92 FLNLM--PQMKTLYLTYCANH--PSAVNVLTEH--SEELGEFMETKG--ASSPGILVLTTGLSKPFMRLDKYPTLLKELE 163 (209)
T ss_dssp HHHHH--HHHHHHHHHHHHHH--HHHHHHHHHH--TTTHHHHTTTTC--CCSSTTTHHHHHTTSTTTGGGTHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHHHHHH--HHHHHHHHHh--CHHHHHHHHHhc--CCCCCcCCHHHHhhHHHHHHhHHHHHHHHHH
Confidence 99986 4585 999999999 6999999988 677887777542 2445679999999999999999999999999
Q ss_pred hcCCCCc-hHHHHHHHHHHHHHHHHHHhhh
Q psy17173 368 SLTDSSK-DKECLEQAQGLLAPLQISLSKI 396 (1108)
Q Consensus 368 K~Tp~~h-D~~~L~~A~~~~~~v~~~ine~ 396 (1108)
|+||++| ||.+|++|++.|++++..||+.
T Consensus 164 k~t~~~h~d~~~l~~Al~~i~~v~~~iNe~ 193 (209)
T 1by1_A 164 RHMEDYHTDRQDIQKSMAAFKNLSAQCQEV 193 (209)
T ss_dssp HSSCCCSSSTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 9999999999999999999996
No 25
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A
Probab=99.98 E-value=1.3e-32 Score=307.58 Aligned_cols=198 Identities=16% Similarity=0.217 Sum_probs=171.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHhHhhhccCHHHHHHHHHHHHHHHHHhhccCCC---CCc
Q psy17173 208 LHYEQVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCLLGAVEDISEMSSD---DHC 284 (1108)
Q Consensus 208 ~sy~evi~ELi~TEr~Yv~~L~~ii~~f~~pl~~~~~l~~~~~i~~IFsNIeeI~~~~~~fL~~Le~~~~~~~~---~~~ 284 (1108)
..+++||+||++||++||++|+.++++|+.||..... .+..++..||+||++|+.+|+.||.+|+++...++. ...
T Consensus 81 ~kR~~vi~ELi~TE~~Yv~~L~~l~~~y~~~l~~~~~-l~~~~~~~iF~ni~~i~~~~~~fl~~L~~~~~~~~~~~~~~~ 159 (283)
T 3jv3_A 81 RKRQGYIHELIVTEENYVNDLQLVTEIFQKPLTESEL-LTEKEVAMIFVNWKELIMCNIKLLKALRVRKKMSGEKMPVKM 159 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHTTCS-SCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTCCCCC
T ss_pred HhHHHHHHHHHhhHHHHHHHHHHHHHHHHhhccccCC-CCHHHHHHHccCHHHHHHHHHHHHHHHHHHHhccccCCchhH
Confidence 4578899999999999999999999999999997654 445899999999999999999999999999875443 578
Q ss_pred chhHHHhhhhcccchhHHHHHhhhccHHHHHHHHHHhc-ChhhHHHHHHhcccccccccccccccccccccchHhHHHHH
Q psy17173 285 IGSCFEEFAEDAEFDVYEKLLHNIVNQKSIEVLSMHVT-QPSILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYI 363 (1108)
Q Consensus 285 IG~~F~~~a~~~~f~~Y~~Yc~N~~~~~a~~~l~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~slLi~PvQRI~rY~LLL 363 (1108)
||+||.+++ ..|++|..||+|+ +.+...+.++.+ ++.+..+++. ++..+.+.+++|.+||++|||||+||+|||
T Consensus 160 ig~~f~~~~--~~~~~Y~~Y~~~~--~~a~~~l~~~~~~~~~f~~~l~~-~~~~~~~~~l~L~s~Li~PvQRi~rY~LLL 234 (283)
T 3jv3_A 160 IGDILSAQL--PHMQPYIRFCSCQ--LNGAALIQQKTDEAPDFKEFVKR-LAMDPRCKGMPLSSFILKPMQRVTRYPLII 234 (283)
T ss_dssp CHHHHHHHG--GGGTHHHHHHHHH--HHHHHHHHHHHHHCHHHHHHHHH-HTTSGGGTTCCHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--hhchhHHHHHcCH--HHHHHHHHHHHhcCHHHHHHHHH-HHhCccccCCCHHHHhhhhHHHhcchHHHH
Confidence 999999885 5589999999998 588888888764 5777766664 666777888999999999999999999999
Q ss_pred HHHHhcCCCCc-hHHHHHHHHHHHHHHHHHHhhhhhhhcCcccccchhhhhhhHHHHHHHHHHHh
Q psy17173 364 KIFHSLTDSSK-DKECLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKK 427 (1108)
Q Consensus 364 keLlK~Tp~~h-D~~~L~~A~~~~~~v~~~ine~~~~k~~~~~~~~~~e~~rk~~~~~kl~eiq~ 427 (1108)
++|+|+||++| |+..|+.|+..|+.++..||+. +|+.++.+++.+||+
T Consensus 235 ~~llk~t~~~~~d~~~l~~A~~~i~~v~~~iNe~----------------~r~~e~~~~l~~iQs 283 (283)
T 3jv3_A 235 KNILENTPENHPDHSHLKHALEKAEELCSQVNEG----------------VREKENSDRLEWIQA 283 (283)
T ss_dssp HHHHTTSCTTSTTHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHGGGC-----
T ss_pred HHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHH----------------HHHHhHHHHHHHhhC
Confidence 99999999999 9999999999999999999987 677788888888874
No 26
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=99.97 E-value=4.4e-32 Score=281.80 Aligned_cols=158 Identities=20% Similarity=0.403 Sum_probs=148.0
Q ss_pred hhHHHHHHHHHHhcCCCCcCchHHHHHHHHHHHHHHHhccC---------CCCCChhhHHHHHHhhCCCCCchhhHHHHH
Q psy17173 31 TLVSSLHSILKQVHNSLDINTDALYYTEKLILKLLNLLCSK---------PLPLTTSDMEGKIKKYFPNPISEWTFNEAK 101 (1108)
Q Consensus 31 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 101 (1108)
-|-..|+|||+||||+.+|..+|+..+++++..++++||.. ....|.+||+.++..+||.++++||+.++.
T Consensus 4 ~~~~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~lpgeLak~Av~eG~ 83 (192)
T 2jss_A 4 TYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGT 83 (192)
T ss_dssp TTHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHSCSHHHHHHHHHHH
T ss_pred hHHHHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999873 234789999999999999999999999999
Q ss_pred HHHHc---------CCCCCCcccchhHHHhhHhhcccc-ccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc
Q psy17173 102 QALEK---------GKKKSSLVISIDRVQNILQKEFYF-RKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQ 171 (1108)
Q Consensus 102 ~~~~~---------~~~r~~l~fpv~~~~~~l~~~~~~-~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~ 171 (1108)
.++.+ +|+||||+|||+||||+||++.++ .||+++|+||||||||||++||||+|||++++.++++|+|+
T Consensus 84 kAv~k~~~sk~~~s~s~ragl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~ 163 (192)
T 2jss_A 84 RAVTKYSSSTQAQSSSARAGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPR 163 (192)
T ss_dssp HHHHHHHHHCSSSCHHHHSSCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHhhccccccccccccCCCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHH
Confidence 99864 345899999999999999999887 79999999999999999999999999999999999999999
Q ss_pred chhhHHhcChhhhhhhc
Q psy17173 172 DIDVAMYADKALLELFF 188 (1108)
Q Consensus 172 ~i~~a~~~D~eL~~l~~ 188 (1108)
||++|++||+||+.||.
T Consensus 164 ~i~lAi~nD~eL~~L~~ 180 (192)
T 2jss_A 164 HLQLAIRGDDELDSLIR 180 (192)
T ss_dssp HHHHHHHTSHHHHHHHC
T ss_pred HHHHHHhccHHHHHHHh
Confidence 99999999999999995
No 27
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.89 E-value=5.1e-24 Score=205.49 Aligned_cols=91 Identities=26% Similarity=0.457 Sum_probs=83.9
Q ss_pred HHHHcCCCCCCcccchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhcCh
Q psy17173 102 QALEKGKKKSSLVISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMYADK 181 (1108)
Q Consensus 102 ~~~~~~~~r~~l~fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~~D~ 181 (1108)
.+..++|+||||+|||+||||+||++.|++||+++|+||||||||||++||||+|||++++.++.+|+|+||++|++||+
T Consensus 13 ~~~~srS~ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~nDe 92 (131)
T 1id3_C 13 KASQSRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDD 92 (131)
T ss_dssp ---CCTTGGGTCSSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTCH
T ss_pred CCCCCccccCCeecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhccH
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCCC
Q psy17173 182 ALLELFFQEDD 192 (1108)
Q Consensus 182 eL~~l~~~d~~ 192 (1108)
||+.||....+
T Consensus 93 EL~~Ll~~vtI 103 (131)
T 1id3_C 93 ELNKLLGNVTI 103 (131)
T ss_dssp HHHHHTTTEEE
T ss_pred HHHHHhcCcee
Confidence 99999964433
No 28
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=99.89 E-value=2e-24 Score=207.50 Aligned_cols=87 Identities=23% Similarity=0.401 Sum_probs=81.2
Q ss_pred HHHHcCCCCCCcccchhHHHhhHhhcccc-ccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhcC
Q psy17173 102 QALEKGKKKSSLVISIDRVQNILQKEFYF-RKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMYAD 180 (1108)
Q Consensus 102 ~~~~~~~~r~~l~fpv~~~~~~l~~~~~~-~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~~D 180 (1108)
....++|+||||+|||+||||+||++.|+ +||+++|+||||||||||++||||||||++++.++.+|+|+||++|++||
T Consensus 15 ~~~~srS~ragLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~nD 94 (128)
T 1f66_C 15 TKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGD 94 (128)
T ss_dssp --CCCHHHHHTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHS
T ss_pred CCCcCccccCCccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhcc
Confidence 34456777999999999999999999987 59999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhc
Q psy17173 181 KALLELFF 188 (1108)
Q Consensus 181 ~eL~~l~~ 188 (1108)
+||+.||.
T Consensus 95 eEL~~Ll~ 102 (128)
T 1f66_C 95 EELDSLIK 102 (128)
T ss_dssp HHHHHHCC
T ss_pred HHHhhhhc
Confidence 99999994
No 29
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=99.89 E-value=3e-24 Score=204.23 Aligned_cols=88 Identities=22% Similarity=0.323 Sum_probs=82.9
Q ss_pred HcCCCCCCcccchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhcChhhh
Q psy17173 105 EKGKKKSSLVISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMYADKALL 184 (1108)
Q Consensus 105 ~~~~~r~~l~fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~~D~eL~ 184 (1108)
.++|+||||+|||+||||+||++.|++||+++|+||||||||||++||||+|||++++.++.+|+|+||++|++||+||+
T Consensus 13 ~srs~ragLqfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~nDeEL~ 92 (120)
T 2f8n_G 13 TSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVANDEELN 92 (120)
T ss_dssp CCHHHHHTCSSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHH
T ss_pred cCcccccCccCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhcCHHHH
Confidence 35667999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCC
Q psy17173 185 ELFFQEDD 192 (1108)
Q Consensus 185 ~l~~~d~~ 192 (1108)
.||....+
T Consensus 93 ~Ll~~vti 100 (120)
T 2f8n_G 93 QLLKGVTI 100 (120)
T ss_dssp HHTTTEEE
T ss_pred HHhCCceE
Confidence 99965443
No 30
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=99.89 E-value=3.5e-24 Score=204.63 Aligned_cols=89 Identities=26% Similarity=0.450 Sum_probs=83.6
Q ss_pred HHcCCCCCCcccchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhcChhh
Q psy17173 104 LEKGKKKSSLVISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMYADKAL 183 (1108)
Q Consensus 104 ~~~~~~r~~l~fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~~D~eL 183 (1108)
-.++|+||||+|||+||||+||++.|++||+++|+||||||||||++||||+|||++++.++.+|+|+||++|++||+||
T Consensus 13 ~~s~s~ragL~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~nDeEL 92 (123)
T 2nqb_C 13 AKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEEL 92 (123)
T ss_dssp CCCHHHHHTCSSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHH
T ss_pred CCCccccCCeeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhccHHH
Confidence 34567799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCC
Q psy17173 184 LELFFQEDD 192 (1108)
Q Consensus 184 ~~l~~~d~~ 192 (1108)
+.||....+
T Consensus 93 ~~Ll~~vti 101 (123)
T 2nqb_C 93 NKLLSGVTI 101 (123)
T ss_dssp HHHTTTEEE
T ss_pred HHHhcCcee
Confidence 999965443
No 31
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=99.88 E-value=5.8e-24 Score=207.69 Aligned_cols=91 Identities=26% Similarity=0.436 Sum_probs=83.7
Q ss_pred HHHHcCCCCCCcccchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhcCh
Q psy17173 102 QALEKGKKKSSLVISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMYADK 181 (1108)
Q Consensus 102 ~~~~~~~~r~~l~fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~~D~ 181 (1108)
.+..++|+||||+|||+||+|+||++.|++||+++|+||||||||||++||||+|||++++.++.+|+|+||++|++||+
T Consensus 32 ~k~~srS~ragLqFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~nDe 111 (149)
T 2f8n_K 32 AKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDE 111 (149)
T ss_dssp --CCCHHHHHTCSSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSH
T ss_pred CCCCCccccCCeeccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhccH
Confidence 34456777999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCCC
Q psy17173 182 ALLELFFQEDD 192 (1108)
Q Consensus 182 eL~~l~~~d~~ 192 (1108)
||+.||....+
T Consensus 112 EL~~Ll~~vtI 122 (149)
T 2f8n_K 112 ELNKLLGRVTI 122 (149)
T ss_dssp HHHHHTTTEEE
T ss_pred HHHHHhcCceE
Confidence 99999965443
No 32
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=99.88 E-value=7.9e-24 Score=203.61 Aligned_cols=88 Identities=27% Similarity=0.460 Sum_probs=82.8
Q ss_pred HcCCCCCCcccchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhcChhhh
Q psy17173 105 EKGKKKSSLVISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMYADKALL 184 (1108)
Q Consensus 105 ~~~~~r~~l~fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~~D~eL~ 184 (1108)
.++|+||||+|||+||||+||++.|++||+++|+||||||||||++||||+|||++++.++.+|+|+||++|++||+||+
T Consensus 16 ~srS~ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~nDeEL~ 95 (129)
T 1tzy_A 16 KSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELN 95 (129)
T ss_dssp CCHHHHHTCSSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHH
T ss_pred CCccccCceeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhccHHHH
Confidence 35667999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCC
Q psy17173 185 ELFFQEDD 192 (1108)
Q Consensus 185 ~l~~~d~~ 192 (1108)
.||..-.+
T Consensus 96 ~L~~~vtI 103 (129)
T 1tzy_A 96 KLLGKVTI 103 (129)
T ss_dssp HHTTTEEE
T ss_pred HHhCCCee
Confidence 99964443
No 33
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=99.71 E-value=2.1e-17 Score=160.55 Aligned_cols=117 Identities=16% Similarity=0.298 Sum_probs=99.0
Q ss_pred HHHhhccCCCcccccccccceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEee
Q psy17173 424 ELKKNVDGVDVRDLRPYLEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYF 503 (1108)
Q Consensus 424 eiq~~I~g~~~~~l~~~~r~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~ 503 (1108)
-+|+.|+||+|.++.+.|..+.+.+.+......+ ..+|||+|||+++||+|++..+.. .|+|++++|
T Consensus 9 il~~~I~gWeG~~i~~lG~ii~~s~v~~~~~~~~-~~~eR~l~LF~~~Ll~~s~~~~~~------------~f~~kgklP 75 (132)
T 1v61_A 9 ILSEPIQAWEGDDIKTLGNVIFMSQVVMQHGACE-EKEERYFLLFSSVLIMLSASPRMS------------GFMYQGKIP 75 (132)
T ss_dssp TTTSCCBTCCSSCSTTTCCCSCEEEEEBCCSSSS-CCCEEEEEECSSCEEEEECSSSSS------------CCEEEEEEC
T ss_pred HHhhhhcccccCChhhcCCeEEEeeEEEEEcccC-cceEEEEEEcCCeEEEEEecCCCc------------eEEEEEEEe
Confidence 3588999999999998776666655444443322 236999999999999999876533 899999999
Q ss_pred ccCeEEeecCCCccccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17173 504 LRKVEINDYENTDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVN 553 (1108)
Q Consensus 504 l~~~~I~d~~d~~~~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~ 553 (1108)
++++.|++.+|+++.+|+|+|.++..+++++.|+|++||++||++|.++.
T Consensus 76 L~g~~V~~~ed~~~~~~aFeI~g~~~~~i~v~~~s~eE~~~Wl~~L~~~i 125 (132)
T 1v61_A 76 IAGMVVNRLDEIEGSDCMFEITGSTVERIVVHCNNNQDFQEWMEQLNRLT 125 (132)
T ss_dssp TTTCBCSTTCSSSSSCCCEEEECSSSCEEEECCCCSHHHHHHHHHHHHHH
T ss_pred cceeEEEeccccccCccEEEEecCCCceEEEEeCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887899999999999999999998764
No 34
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=2.2e-17 Score=171.63 Aligned_cols=151 Identities=14% Similarity=0.297 Sum_probs=120.7
Q ss_pred cCCCCc-hHHHHHHHHHHHHHHHHHHhhhhhhhcCcccccchhhhhhhHHHHHHHHHHHhhccCCCc-----------cc
Q psy17173 369 LTDSSK-DKECLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKNVDGVDV-----------RD 436 (1108)
Q Consensus 369 ~Tp~~h-D~~~L~~A~~~~~~v~~~ine~~~~k~~~~~~~~~~e~~rk~~~~~kl~eiq~~I~g~~~-----------~~ 436 (1108)
||+++| |+.+|++|++.++.++.+||+. +|+.++.++|.+||..|++... .|
T Consensus 2 ~T~~~~~e~~~L~~Al~~ik~i~~~VNe~----------------vre~E~~~rL~eiq~~l~~~~~~~~~~~~~f~~~d 65 (185)
T 2lg1_A 2 MTKDNEVEQEDLAQSLSLVKDVIGAVDSK----------------VASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKED 65 (185)
T ss_dssp CSSTTTSCCTTSCCSSSSSTTTSGGGGGG----------------HHHHHHHHHHHHHHHSSCSSCCEECTTSCEECHHH
T ss_pred CCCCCcHhHHHHHHHHHHHHHHHHHHhHH----------------HHHHHHHHHHHHHHHHhcccccccccccccccccc
Confidence 899999 9999999999999999999987 6888888999999999987531 24
Q ss_pred ccccccceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEE------EEeeccCeEEe
Q psy17173 437 LRPYLEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCK------EMYFLRKVEIN 510 (1108)
Q Consensus 437 l~~~~r~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k------~~i~l~~~~I~ 510 (1108)
++ .|+|+++|.|......++ .+++|+|||||+||+|+++.. +|.++ ..+++.++.|+
T Consensus 66 L~--~R~Ll~eG~L~~k~~~~~-~~d~~~fLf~D~Ll~~~~~~~--------------ky~~~~~~~~~pvi~L~~~~vr 128 (185)
T 2lg1_A 66 LK--RKKLVRDGSVFLKNAAGR-LKEVQAVLLTDILVFLQEKDQ--------------KYIFASLDQKSTVISLKKLIVR 128 (185)
T ss_dssp HT--TSCEEEEEEEEEECTTCC-EEEEEEEEESSEEECCEEETT--------------EEECCCCSSSCSEEESSSCEEE
T ss_pred cC--CCceeeeceEEEeccCCC-eeeEEEEeecCEEEEEEecCC--------------EEEEEcccCCCCeEeecceEEe
Confidence 44 399999999985544443 479999999999999998532 56664 35788999998
Q ss_pred ecCCCccccccEEeec-C--CCCeEEEEeCCHHHHHHHHHHHHHHHhh
Q psy17173 511 DYENTDDIKNAFEIAP-R--DQPSIIIVTKSPEDKKSWFSDLIMVNTK 555 (1108)
Q Consensus 511 d~~d~~~~~~aF~I~~-~--~~~~~~l~a~s~eeK~~Wm~~L~~l~~~ 555 (1108)
+..+. ..+|-+.. . +...|+|+|.|+++|+.||++|.++...
T Consensus 129 e~a~d---~~~~fli~~~~~g~~~yel~a~s~~er~~W~~~I~~Ai~~ 173 (185)
T 2lg1_A 129 EVAHE---EKGLFLISMGMTDPEMVEVHASSKEERNSWIQIIQDTINT 173 (185)
T ss_dssp CCSSC---SSEEEEECCSSSCCCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred ccCCC---CCeEEEEEecCCCCeEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 87653 24554443 2 3458999999999999999999876644
No 35
>3t6a_A Breast cancer anti-estrogen resistance protein 3; CDC25-homology domain, GTPase exchange factor, signaling Pro; HET: POG; 2.40A {Homo sapiens}
Probab=99.59 E-value=2.3e-15 Score=163.66 Aligned_cols=244 Identities=15% Similarity=0.134 Sum_probs=146.9
Q ss_pred ccccCHHHHHHHHhHHHHHHhcCCChhhhhcccccCCCCC--CCCc----hHHHHHHHHhhHhhHHHHHhcCCC-CHHHH
Q psy17173 779 ILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKA--EYSP----NLIKIMKHTTNFTRWLEKIIVEAE-NFDER 851 (1108)
Q Consensus 779 ll~~~p~eiA~QLTl~e~~lf~~I~~~Ell~~~w~k~~~~--~~~p----ni~~~i~~fn~ls~wv~~~IL~~~-~~~~R 851 (1108)
++..+|.++|+|||.+|+++++.....+-....+.....- ..-| --..++++||.++.||+.+||.+. +.++|
T Consensus 44 L~~~~~~~lA~hlt~~D~~lar~l~~t~~~~~~mgv~sglELitlPhG~qlRldlleR~~~l~~wva~~IL~C~~~~~eR 123 (333)
T 3t6a_A 44 FTNNDPKVIAQHVLSMDCRVARILGVSEEMRRNMGVSSGLELITLPHGHQLRLDIIERHNTMAIGIAVDILGCTGTLEDR 123 (333)
T ss_dssp HHHSCHHHHHHHHHHHHHHHTTSSCCCHHHHHHHSSSCHHHHTTSGGGHHHHHHHHHHHHHHHHHHHHHHHTSCCSHHHH
T ss_pred HhccChHHHHHHHHHHHHHHHHhcCCcHHHHhhhcCCCcceEEEeeccchhhhHHHHHhcccHHHHHHHHHhCCCchHHH
Confidence 6679999999999999999987755544332222211100 0011 125689999999999999999875 48899
Q ss_pred HHHHHHHHHHHHHHh-hcCChhHHHHHHHhhcccccccchhhhhcCChHHHHHHHHHHhhhhhhHHHHHHHHhcC--C--
Q psy17173 852 LAIMTRIIEMMIVLQ-KLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDARELNGDHFKKYQEKLRNI--N-- 926 (1108)
Q Consensus 852 a~~i~kfI~vA~~~~-~l~NFns~~aI~sgL~s~~I~RLk~Tw~~l~~~~~k~l~~l~~l~~~n~~~yR~~l~~~--~-- 926 (1108)
+.++.+||+||.+|+ .++|++|++||+.||+++.|+||++||..+++++.+..-.+++.-..-.+.+.+--..+ .
T Consensus 124 ~~lL~k~IqiA~~Lk~~~gNL~sf~AVm~aL~~pqVSRL~~TW~~Lr~k~te~ai~yEk~LkP~~k~lneG~~~~~~~~~ 203 (333)
T 3t6a_A 124 AATLSKIIQVAVELKDSMGDLYSFSALMKALEMPQITRLEKTWTALRHQYTQTAILYEKQLKPFSKLLHEGRESTCVPPN 203 (333)
T ss_dssp HHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHSHHHHTCHHHHHHHHHHSHHHHHHHHHTHHHHHHHHHTTCGGGSCCTT
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhccHHHHHHHHHHHHhhHHhhHHHHHHHHHhhHHHHHhhCCCCCCCCCCC
Confidence 999999999999999 89999999999999999999999999999999988744333332112222222211111 1
Q ss_pred CCcccchhhhHhHHH---HHHhcCCCCCC---CCCcccHHHHHHHHHHHHHHHHHhcC----CCCCCCchHHHHHHH---
Q psy17173 927 PPCIPFFGMYLTNIL---HIEEGNPDFLP---DSKLINFTKRRKVAEIISEIQQYQNE----PYCLSVVPIYREFFE--- 993 (1108)
Q Consensus 927 ~p~IPflGv~L~DL~---~i~egnp~~~~---~~~lINf~K~r~i~~ii~~i~~~Q~~----~Y~~~~~~~i~~~l~--- 993 (1108)
.-|||++--+++=+- ...+| ++.-+ .+--+-+.-+..--.++.....|+.. --.|++++.+...|.
T Consensus 204 ~~t~Phv~Pl~~llEr~~~~~e~-~~~we~~d~g~e~l~~hL~~aR~~a~~~~~y~~nA~~~L~g~~~~~el~Eif~TeF 282 (333)
T 3t6a_A 204 NVSVPLLMPLVTLMERQAVTFEG-TDMWEKNDQSCEIMLNHLATARFMAEAADSYRMNAERILAGFQPDEEMNEICKTEF 282 (333)
T ss_dssp CCSBCCCHHHHHHHCTTCCCGGG-CSCCCGGGCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTCCCCHHHHHHTCHHH
T ss_pred CccchhHHHHHHHHhcCCccccC-CCcCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 247888865543221 00111 11111 11112222222222233333444441 124788888765432
Q ss_pred -----h-cCCCCCCCch----hhHHHHHHHhhhccCCCCCC
Q psy17173 994 -----N-LSPFEGIDDN----EMCNILFEQSLLIEPRHATH 1024 (1108)
Q Consensus 994 -----~-l~~~~~~~e~----e~~d~ly~~Sl~iEPr~~~~ 1024 (1108)
+ -... ..+-. -++.-|..+|-++||...+.
T Consensus 283 q~RlLwGsrGa-~~~q~eRy~Kf~~VLtals~klep~~~~~ 322 (333)
T 3t6a_A 283 QMRLLWGSKGA-QVNQTERYEKFNQILTALSRKLEPPPVKQ 322 (333)
T ss_dssp HHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHHHSCC----
T ss_pred HHHHhhccCcC-CCCHHHHHHHHHHHHHHHHHHhCCCcchH
Confidence 1 0010 11211 14566889999999987654
No 36
>3t6g_A SH2 domain-containing protein 3C; CDC25-homology domain, GTPase exchange factor, focal-adhesio targeting domain, signaling protein; 2.50A {Homo sapiens}
Probab=99.58 E-value=2.9e-15 Score=162.68 Aligned_cols=155 Identities=16% Similarity=0.164 Sum_probs=117.0
Q ss_pred ccccCHHHHHHHHhHHHHHHhcCCChhhhhcccccCCCCC--CCCc----hHHHHHHHHhhHhhHHHHHhcCCC-CHHHH
Q psy17173 779 ILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKA--EYSP----NLIKIMKHTTNFTRWLEKIIVEAE-NFDER 851 (1108)
Q Consensus 779 ll~~~p~eiA~QLTl~e~~lf~~I~~~Ell~~~w~k~~~~--~~~p----ni~~~i~~fn~ls~wv~~~IL~~~-~~~~R 851 (1108)
++..+|.++|+|||.+|+++|+.....+-....+.....- ..-| --..+++++|.+..||+.+||.+. +..+|
T Consensus 45 L~~~~~~~lA~hlt~~D~~l~~~l~vt~~~~~~mgv~sglELitlPhG~qlRldlleR~~~l~~~va~~IL~c~g~~~~R 124 (331)
T 3t6g_A 45 LAEVDARTLARHVTKVDCLVARILGVTKEMQTLMGVRWGMELLTLPHGRQLRLDLLERFHTMSIMLAVDILGSTGSAEER 124 (331)
T ss_dssp HHTSCHHHHHHHHHHHHHHHTTSSSCCHHHHHHHSSSCHHHHTTSGGGHHHHHHHHHHHHHHHHHHHHHHHTCCSCHHHH
T ss_pred HhccChHHHHHHHHHHHHHHHHhcCCCHHHHhhhcCCCcceeEEecccchhhHHHHHHhcchHHHHHHHHhcCCCCHHHH
Confidence 6679999999999999999998765443332222211100 0011 125789999999999999999986 99999
Q ss_pred HHHHHHHHHHHHHHh-hcCChhHHHHHHHhhcccccccchhhhhcCChHHHHHHHHHHhhhhhhHHHHHHHHhcCC----
Q psy17173 852 LAIMTRIIEMMIVLQ-KLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDARELNGDHFKKYQEKLRNIN---- 926 (1108)
Q Consensus 852 a~~i~kfI~vA~~~~-~l~NFns~~aI~sgL~s~~I~RLk~Tw~~l~~~~~k~l~~l~~l~~~n~~~yR~~l~~~~---- 926 (1108)
+.++.+||+||.+|+ .++|+++++||+.||+++.|.||++||..++.++.+..-..++.- +-..+.+..+.
T Consensus 125 a~lL~k~IqiA~~Lk~~~gnL~sF~AIm~aL~~pqVsRLe~TW~~Lr~k~te~Ai~yEk~L----kP~~k~lneg~~~~~ 200 (331)
T 3t6g_A 125 AALLHKTIQLAAELRGTMGNMFSFAAVMGALDMAQISRLEQTWVTLRQRHTEGAILYEKKL----KPFLKSLNEGKEGPP 200 (331)
T ss_dssp HHHHHHHHHHHHHHHHTSCBHHHHHHHHHHHTSHHHHTCHHHHHHHHHHCHHHHHHHHHTH----HHHHHHHHTTCCCSC
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHhhhccHHHHHHHHHHHHhhhhhhHHHHHHHHHh----hHHHHHHhCCCCCCC
Confidence 999999999999999 999999999999999999999999999999998877644443321 22233344433
Q ss_pred --CCcccchhhhH
Q psy17173 927 --PPCIPFFGMYL 937 (1108)
Q Consensus 927 --~p~IPflGv~L 937 (1108)
.-|||++.-++
T Consensus 201 ~~~~~~Phl~Pl~ 213 (331)
T 3t6g_A 201 LSNTTFPHVLPLI 213 (331)
T ss_dssp GGGCSBCCCHHHH
T ss_pred CCCCccchHHHHH
Confidence 24788876554
No 37
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.52 E-value=5.8e-15 Score=136.32 Aligned_cols=82 Identities=15% Similarity=0.140 Sum_probs=62.5
Q ss_pred cCCCCCCcccchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhcChhhhh
Q psy17173 106 KGKKKSSLVISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMYADKALLE 185 (1108)
Q Consensus 106 ~~~~r~~l~fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~~D~eL~~ 185 (1108)
+.+++++++|||+||+|.+|.+.+..||+++|+||+++++||++++++++|+|.++..++++|+|+||..|+++|++++-
T Consensus 3 ~~~kk~~~~fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~F 82 (98)
T 1jfi_A 3 SKKKKYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAA 82 (98)
T ss_dssp -------CCCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC-------
T ss_pred CcccccCCCCChHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hh
Q psy17173 186 LF 187 (1108)
Q Consensus 186 l~ 187 (1108)
|.
T Consensus 83 L~ 84 (98)
T 1jfi_A 83 NK 84 (98)
T ss_dssp --
T ss_pred HH
Confidence 76
No 38
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
Probab=99.52 E-value=1.5e-13 Score=131.00 Aligned_cols=104 Identities=13% Similarity=0.242 Sum_probs=88.0
Q ss_pred ccccceeeeeeeEEEeCCCCc-ceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCcc
Q psy17173 439 PYLEEFYREDTLMKYDGKSNR-LTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDD 517 (1108)
Q Consensus 439 ~~~r~li~eG~L~k~~~~~~~-~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~ 517 (1108)
.++|.||+||.++++.....+ .+.+|+|||||+||+|+++..+.. .|++...+++.++.|.|.+|++.
T Consensus 3 ~pgR~lv~eG~l~el~~~~~k~~~~v~~FLfND~Ll~a~~~~~~~~-----------~~~~~~~~~L~~~~v~d~~d~~~ 71 (113)
T 1zc3_B 3 TPGQYLVYNGDLVEYEADHMAQLQRVHGFLMNDCLLVATWLPQRRG-----------MYRYNALYPLDRLAVVNVKDNPP 71 (113)
T ss_dssp --CCCEEEEEEEEEEETTTCCEEEEEEEEEESSEEEEEEEECCTTS-----------CEEEEEEEETTTCEEEEECCBTT
T ss_pred CCCeEEEEeCcEEEEccccCCCCccEEEEecCCEEEEEEEeccCcc-----------cEEEEEEEEcccCEEEECCCCcc
Confidence 357999999999999875433 245799999999999999755322 48999899999999999999999
Q ss_pred ccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHHh
Q psy17173 518 IKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVNT 554 (1108)
Q Consensus 518 ~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~~ 554 (1108)
.+|+|.|... .++++++|+|++||.+||++|.++..
T Consensus 72 ~~n~f~i~~~-~~s~~~~aes~~eK~~Wl~~~~~a~~ 107 (113)
T 1zc3_B 72 MKDMFKLLMF-PESRIFQAENAKIKREWLEVLEETKR 107 (113)
T ss_dssp BSSEEEEEET-TEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEeC-CceEEEEcCCHHHHHHHHHHHHHHHH
Confidence 9999999965 56899999999999999999988753
No 39
>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens}
Probab=99.29 E-value=1.5e-11 Score=119.48 Aligned_cols=111 Identities=16% Similarity=0.231 Sum_probs=85.2
Q ss_pred ccccccceeeeeeeEEEeCCC----CcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeec
Q psy17173 437 LRPYLEEFYREDTLMKYDGKS----NRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDY 512 (1108)
Q Consensus 437 l~~~~r~li~eG~L~k~~~~~----~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~ 512 (1108)
+..|+|+||..+.|..+.+-. +..++||+|||||+||+||+-++++ ....|+++..+++.++.|...
T Consensus 6 L~~phRrlvc~~~l~ev~d~~K~~~kg~qqR~~FLFND~LL~TK~~~kkk---------~~~~Y~vr~~~~L~gm~V~~~ 76 (140)
T 3qwm_A 6 LSLPHRRLVCYCRLFEVPDPNKPQKLGLHQREIFLFNDLLVVTKIFQKKK---------NSVTYSFRQSFSLYGMQVLLF 76 (140)
T ss_dssp ----CCCEEEEEEEEECSCTTSCCCTTTTEEEEEEESSCEEEEECCC------------CCCCCCCEEEECCTTEEEEEE
T ss_pred eccCCceEEEEEeeeeeccCcccccccccceEEEEecchhhheeecccCC---------CCCceEEEEEeeecceEEEcc
Confidence 566789999999998775422 2246999999999999999654322 134899999999999999888
Q ss_pred CCCccccccEEeecCC-C----CeEEEEeCCHHHHHHHHHHHHHHHhhHH
Q psy17173 513 ENTDDIKNAFEIAPRD-Q----PSIIIVTKSPEDKKSWFSDLIMVNTKSM 557 (1108)
Q Consensus 513 ~d~~~~~~aF~I~~~~-~----~~~~l~a~s~eeK~~Wm~~L~~l~~~s~ 557 (1108)
++. ...|+|.|.+.. | ..++|.|.|++||.+|+++|........
T Consensus 77 e~e-~~p~~~~l~s~~~G~~~k~~i~~~A~s~~ER~rwi~dL~esI~e~~ 125 (140)
T 3qwm_A 77 ENQ-YYPNGIRLTSSVPGADIKVLINFNAPNPQDRKKFTDDLRESIAEVQ 125 (140)
T ss_dssp CCS-SCTTEEEEEECCTTSCCEEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred cCC-CCceEEEEEecCCCCcceEEEEEECCCHHHHHHHHHHHHHHHHHHH
Confidence 776 589999999643 2 4799999999999999999988755443
No 40
>1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal transduction, signaling protein; NMR {Caenorhabditis elegans} SCOP: b.55.1.1
Probab=99.10 E-value=5.7e-11 Score=113.64 Aligned_cols=102 Identities=17% Similarity=0.259 Sum_probs=82.9
Q ss_pred cceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCC-Cccccc
Q psy17173 442 EEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYEN-TDDIKN 520 (1108)
Q Consensus 442 r~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d-~~~~~~ 520 (1108)
++|+++|.+..+.+..+ .++||+|||++.||+||++.. .+...|.||..+.++++.|.+..+ ++ ..
T Consensus 8 G~Ll~q~~f~V~~~~~k-~~eR~vFLFe~~ilf~K~~~~----------~~~~~Y~~K~~ikl~~~~lte~~~~~d--~~ 74 (119)
T 1fho_A 8 GRIIRHDAFQVWEGDEP-PKLRYVFLFRNKIMFTEQDAS----------TSPPSYTHYSSIRLDKYNIRQHTTDED--TI 74 (119)
T ss_dssp CCSSEEEEEEECSTTCS-CEEEEEEEETTEEEEEEECCS----------SSSCCCSSCCEEESSSCEEEEECTTCC--EE
T ss_pred CCccccCceEEEeCCCC-cceEEEEEecCcEEEEEEecC----------CCCCcEEEeeEEeeceeEEEecCCCCC--Cc
Confidence 48999999999987533 379999999999999998832 134589999999999999999876 54 35
Q ss_pred cEEeecCC-CCeEEE--EeCCHH-HHHHHHHHHHHHHhhH
Q psy17173 521 AFEIAPRD-QPSIII--VTKSPE-DKKSWFSDLIMVNTKS 556 (1108)
Q Consensus 521 aF~I~~~~-~~~~~l--~a~s~e-eK~~Wm~~L~~l~~~s 556 (1108)
.|+|+..+ ...+++ .|.|.+ .|+.|+++|.++|.+.
T Consensus 75 kFeiw~~~~~~~~il~~qA~s~e~~K~~Wv~~I~~~~~~~ 114 (119)
T 1fho_A 75 VLQPQEPGLPSFRIKPKDFETSEYVRKAWLRDIAEEQEKY 114 (119)
T ss_dssp EEECCSTTCCCBCCCCCSSSSCSHHHHHHHHHHHTCCHHH
T ss_pred EEEEccCCCCceEEEeeecCCcHHHHHHHHHHHHHHHHHH
Confidence 78998665 346778 899999 9999999998865443
No 41
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.08 E-value=1.3e-10 Score=107.13 Aligned_cols=77 Identities=10% Similarity=0.131 Sum_probs=70.6
Q ss_pred CCcccchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhcChhhhhhh
Q psy17173 111 SSLVISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMYADKALLELF 187 (1108)
Q Consensus 111 ~~l~fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~~D~eL~~l~ 187 (1108)
.+++||++||+|.+|.+....||+..|++|+++++||++.++++.|++.++..+++.|+++||..|+++|++++-|.
T Consensus 16 ~~~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL~ 92 (97)
T 1n1j_B 16 RVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLI 92 (97)
T ss_dssp ----CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGT
T ss_pred CCCcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHHHH
Confidence 45789999999999999888999999999999999999999999999999999999999999999999999988765
No 42
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.04 E-value=1.9e-10 Score=109.98 Aligned_cols=74 Identities=9% Similarity=0.136 Sum_probs=70.5
Q ss_pred CcccchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhcChhhhh
Q psy17173 112 SLVISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMYADKALLE 185 (1108)
Q Consensus 112 ~l~fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~~D~eL~~ 185 (1108)
.-+|||+||+|.+|.+....||+.+|++|+++++||+++++++.|++.++..++++|+|+||..|+.+|++++=
T Consensus 39 ~~~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~dF 112 (119)
T 4g92_C 39 IHQLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDF 112 (119)
T ss_dssp CCSSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGG
T ss_pred cCCCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchhhH
Confidence 34799999999999999999999999999999999999999999999999999999999999999999998863
No 43
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.68 E-value=1e-07 Score=94.28 Aligned_cols=139 Identities=11% Similarity=0.139 Sum_probs=105.9
Q ss_pred HHHHHHHHHHhcCCCCcCchHHHHHHHHHHHHHHHhccCCCCCChhhHHHHHHhhCCCCCchhhHHHHHHHHH--cCCCC
Q psy17173 33 VSSLHSILKQVHNSLDINTDALYYTEKLILKLLNLLCSKPLPLTTSDMEGKIKKYFPNPISEWTFNEAKQALE--KGKKK 110 (1108)
Q Consensus 33 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~--~~~~r 110 (1108)
...++++.++.-|..-|..||.+.+.+.+-.++..+... ..+.++.-==..+..--+..|-..+. .--.|
T Consensus 7 ~a~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~--------A~~~a~ha~RKTv~a~DV~~a~~~lg~~~v~d~ 78 (154)
T 1f1e_A 7 KAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANA--------AKSVLDASGKKTLMEEHLKALADVLMVEGVEDY 78 (154)
T ss_dssp HHHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHH--------HHHHHHTTTCSEECHHHHHHHHHHHTCTTSTTC
T ss_pred ccHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHcCCCcCCHHHHHHHHHhcccccCCcc
Confidence 568899999998999999999999999888888876651 11111100000111100111222221 22458
Q ss_pred CCcccchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhcC
Q psy17173 111 SSLVISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMYAD 180 (1108)
Q Consensus 111 ~~l~fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~~D 180 (1108)
+++.||+..|+|++|++ .+.||++.+.++++.+||++..+|.+.|+++++..+++.|+++||.+|+.++
T Consensus 79 ~~l~lP~a~V~Ri~k~~-g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~ 147 (154)
T 1f1e_A 79 DGELFGRATVRRILKRA-GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYS 147 (154)
T ss_dssp CSCCCCHHHHHHHHHHT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred ccccCCccHHHHHHHHc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 89999999999999998 7799999999999999999999999999999999999999999999999864
No 44
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=98.58 E-value=2.5e-08 Score=97.53 Aligned_cols=83 Identities=8% Similarity=0.111 Sum_probs=60.7
Q ss_pred HcCCCCCCcccchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHH-HhcCcccccccchhhHHhcChhh
Q psy17173 105 EKGKKKSSLVISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYV-KNIRKVDISIQDIDVAMYADKAL 183 (1108)
Q Consensus 105 ~~~~~r~~l~fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~-~~~~~~~itp~~i~~a~~~D~eL 183 (1108)
.+++.+.+++||++||+|.+|.+-...+|+..|+++++.++|+++.++.+.|++.+ +..+++.|+++||..||.+++.+
T Consensus 10 ~s~~~~~~~~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~ 89 (140)
T 2byk_A 10 VERPPTAETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNL 89 (140)
T ss_dssp -------------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTT
T ss_pred CCCCcccCCCCCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchh
Confidence 34666889999999999999999888999999999999999999999999999999 99999999999999999999888
Q ss_pred hhhh
Q psy17173 184 LELF 187 (1108)
Q Consensus 184 ~~l~ 187 (1108)
.=|.
T Consensus 90 dFL~ 93 (140)
T 2byk_A 90 EFLL 93 (140)
T ss_dssp GGGT
T ss_pred hhHh
Confidence 7665
No 45
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=98.49 E-value=1.1e-07 Score=88.48 Aligned_cols=70 Identities=9% Similarity=0.143 Sum_probs=61.8
Q ss_pred CCCCCCcccchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhc
Q psy17173 107 GKKKSSLVISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMYA 179 (1108)
Q Consensus 107 ~~~r~~l~fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~~ 179 (1108)
+++.++ ||++.|+|+++++.. .||+..+..++++||||...+|++.|.+++++.+++.|+++||.+|++.
T Consensus 24 r~~~~g--ip~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~ 93 (103)
T 2yfw_B 24 RDNIQG--ITKPAIRRLARRGGV-KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKR 93 (103)
T ss_dssp --------CCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred hhhhcc--CCHHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHH
Confidence 445565 999999999998877 7999999999999999999999999999999999999999999999985
No 46
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=98.47 E-value=1.1e-07 Score=88.51 Aligned_cols=71 Identities=8% Similarity=0.164 Sum_probs=65.1
Q ss_pred CCCCCCcccchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhcC
Q psy17173 107 GKKKSSLVISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMYAD 180 (1108)
Q Consensus 107 ~~~r~~l~fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~~D 180 (1108)
+++.++ ||++.|+|+++++.. .||+..+..++++||||...+|++.|.+++++.+++.|+++||.+|++..
T Consensus 24 r~~~~g--ip~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 24 RDNIQG--ITKPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp CCGGGG--SCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred hhhccc--CCHHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHc
Confidence 344555 999999999998877 79999999999999999999999999999999999999999999999854
No 47
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=98.43 E-value=2.3e-06 Score=80.13 Aligned_cols=96 Identities=17% Similarity=0.286 Sum_probs=75.2
Q ss_pred cceeeeeeeEEEeCCCCcceeEEEEeecC--eEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCc---
Q psy17173 442 EEFYREDTLMKYDGKSNRLTERKVYFFDG--VLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTD--- 516 (1108)
Q Consensus 442 r~li~eG~L~k~~~~~~~~~er~~FLF~d--~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~--- 516 (1108)
+..+++|-|.+.++..+.++.|++.|.++ .|.+.+..... ..++.++|.++.|....+..
T Consensus 5 ~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~~~L~yyk~~~~~---------------~~~g~i~L~~~~v~~~~~~~~~~ 69 (109)
T 2i5f_A 5 GVIIKQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAE---------------DPLGAIHLRGCVVTSVESNSNGR 69 (109)
T ss_dssp CCEEEEEEEEEECTTTCCEEEEEEEEETTTTEEEEECTTSCS---------------SCSEEEECTTCEEEEECC-----
T ss_pred CceeEEEEEEEcCCCCCCceEEEEEEeCCCcEEEEECCCCCC---------------CccEEEECCCCEEEEccCCcccc
Confidence 57899999999877666778999999987 88888654321 23557888888776655432
Q ss_pred --cccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17173 517 --DIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMV 552 (1108)
Q Consensus 517 --~~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l 552 (1108)
+-.+.|.|...++..|.|.|.|++++++||.+|..+
T Consensus 70 ~~~~~~~F~i~~~~~~~~~l~a~s~~e~~~Wi~ai~~~ 107 (109)
T 2i5f_A 70 KSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMA 107 (109)
T ss_dssp ---CCSEEEEECTTCCEEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCCceEEEEEeCCCCEEEEEcCCHHHHHHHHHHHHHH
Confidence 257899999887778999999999999999999764
No 48
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=98.32 E-value=4.7e-06 Score=77.60 Aligned_cols=97 Identities=12% Similarity=0.275 Sum_probs=76.2
Q ss_pred ceeeeeeeEEEeCCC----CcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecC---CC
Q psy17173 443 EFYREDTLMKYDGKS----NRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYE---NT 515 (1108)
Q Consensus 443 ~li~eG~L~k~~~~~----~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~---d~ 515 (1108)
..+++|-|.+.+++. +.++.|++.|-++.|.+.+..... ..++.++|.++.+...+ +.
T Consensus 2 ~v~~~G~L~K~~~~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~---------------~~~g~i~L~~~~v~~~~~~~~~ 66 (108)
T 1u5d_A 2 SVIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSK---------------QPKGTFLIKGYSVRMAPHLRRD 66 (108)
T ss_dssp CEEEEEEEEEEEECSSSSCEEEEEEEEEEETTEEEEESSTTCS---------------SCSEEEECTTCEEEECGGGCSS
T ss_pred CccEEEEEEEcCCCCCccccCceeeEEEEeCCEEEEecCCCCC---------------CCCEEEEecceEEEeCCccccc
Confidence 578999999887653 567899999999999998865432 22456788888876653 23
Q ss_pred ccccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHHh
Q psy17173 516 DDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVNT 554 (1108)
Q Consensus 516 ~~~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~~ 554 (1108)
..-.+.|.|...++..+.|.|.|+++++.||.+|..+..
T Consensus 67 ~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~ai~~~i~ 105 (108)
T 1u5d_A 67 SKKESCFELTSQDRRTYEFTATSPAEARDWVDQISFLLK 105 (108)
T ss_dssp GGGGGEEEEECSSSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred cCCcceEEEEcCCCcEEEEECCCHHHHHHHHHHHHHHHH
Confidence 345789999987667899999999999999999987654
No 49
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.30 E-value=5.4e-06 Score=78.27 Aligned_cols=97 Identities=16% Similarity=0.176 Sum_probs=76.7
Q ss_pred ceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEee-cCCCcccccc
Q psy17173 443 EFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEIND-YENTDDIKNA 521 (1108)
Q Consensus 443 ~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d-~~d~~~~~~a 521 (1108)
..+++|-|.|.++..+.++.|++.|.++.|.+.+..... ..++.++|.++.+.. ..+...-.+.
T Consensus 4 ~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~---------------~~~g~i~L~~~~~~~~~~~~~~~~~~ 68 (113)
T 1pls_A 4 KRIREGYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKSDN---------------SPKGMIPLKGSTLTSPCQDFGKRMFV 68 (113)
T ss_dssp CCSEEEEEEEESSSSSCCEEEEEEEETTEEEEESSTTCS---------------SCSEEEESSSCCEESSCCSSCCSSSE
T ss_pred CCcEEEEEEEeCCCCCCceEEEEEEECCEEEEEeCCCCC---------------CcceEEEcCCCEEEEecCCCCCCccE
Confidence 467899999887766667899999999999998865432 234678888888865 3344455789
Q ss_pred EEeecCCCCeEEEEeCCHHHHHHHHHHHHHHHh
Q psy17173 522 FEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVNT 554 (1108)
Q Consensus 522 F~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~~ 554 (1108)
|+|...++..|.|.|.|++++++||.+|..+..
T Consensus 69 F~i~~~~~r~~~l~a~s~~e~~~Wi~ai~~~~~ 101 (113)
T 1pls_A 69 FKITTTKQQDHFFQAAFLEERDAWVRDINKAIK 101 (113)
T ss_dssp EEEEETTTEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHh
Confidence 999987777999999999999999999976543
No 50
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.24 E-value=9e-06 Score=77.05 Aligned_cols=97 Identities=20% Similarity=0.223 Sum_probs=76.9
Q ss_pred cceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCC--cccc
Q psy17173 442 EEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENT--DDIK 519 (1108)
Q Consensus 442 r~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~--~~~~ 519 (1108)
...+++|-|.+.++..+.++.|++.|.++.|.+.+..... ..++.++|.++.+....+. ..-.
T Consensus 6 ~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~---------------~~~g~i~L~~~~v~~~~~~~~~~~~ 70 (118)
T 1v89_A 6 SGPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDT---------------KPQGCMYLPGCTIKEIATNPEEAGK 70 (118)
T ss_dssp SCEEEEEEEEEECSSSSCEEEEEEEEETTEEEEESSSSCC---------------SCSEEECSTTEEEEEECCCSSCCCC
T ss_pred CCCcEEEEEEecCCCCCCccEEEEEEECCEEEEEeCCCCC---------------CceEEEECCCCEEEEcCcCcccCCc
Confidence 3678999999988766677899999999999998865432 2356788888888765432 3347
Q ss_pred ccEEeecC-------CCCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17173 520 NAFEIAPR-------DQPSIIIVTKSPEDKKSWFSDLIMVN 553 (1108)
Q Consensus 520 ~aF~I~~~-------~~~~~~l~a~s~eeK~~Wm~~L~~l~ 553 (1108)
+.|+|... .+..|.|.|.|++|++.||++|..+.
T Consensus 71 ~~f~i~~~~~~~~~~~~~~~~l~a~s~~e~~~Wi~al~~~~ 111 (118)
T 1v89_A 71 FVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVA 111 (118)
T ss_dssp CEEEEEESCCSSCCSSCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred ceEEEECCccccccCCCcEEEEECCCHHHHHHHHHHHHHHH
Confidence 89999873 46689999999999999999997764
No 51
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Probab=98.22 E-value=8.7e-06 Score=78.78 Aligned_cols=96 Identities=17% Similarity=0.286 Sum_probs=75.9
Q ss_pred cceeeeeeeEEEeCCCCcceeEEEEeecC--eEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCc---
Q psy17173 442 EEFYREDTLMKYDGKSNRLTERKVYFFDG--VLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTD--- 516 (1108)
Q Consensus 442 r~li~eG~L~k~~~~~~~~~er~~FLF~d--~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~--- 516 (1108)
...+++|-|.|.+...+.++.|++.|.++ .|.+.+..... ..++.|+|.++.|....+..
T Consensus 16 ~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~~~L~yy~~~~~~---------------~~~g~i~L~~~~v~~~~~~~~~~ 80 (129)
T 1x05_A 16 GVIIKQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAE---------------DPLGAIHLRGCVVTSVESNSNGR 80 (129)
T ss_dssp SEEEEEEEEEECCSSCCCCEEEEEEEEETTTEEEEECSSCCS---------------SCSEEEECTTCEEEECCCCCCSS
T ss_pred CCceEEEEEEecCCCCCCCeeEEEEEeCCCCEEEEECCCCCC---------------cceeEEEccCCEEEEccCCcccc
Confidence 57899999999877666678999999987 78887654321 23567888888877665442
Q ss_pred --cccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17173 517 --DIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMV 552 (1108)
Q Consensus 517 --~~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l 552 (1108)
+-.+.|+|...++..|.|.|.|++++++||.+|..+
T Consensus 81 ~~~~~~~F~i~~~~~~~~~l~a~s~~e~~~Wi~al~~~ 118 (129)
T 1x05_A 81 KSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMA 118 (129)
T ss_dssp SCSSCSEEEEECTTCCCCEEECSSHHHHHHHHHHHHHH
T ss_pred ccCCCeEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHH
Confidence 257899999876678999999999999999999765
No 52
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=1.2e-05 Score=76.07 Aligned_cols=97 Identities=14% Similarity=0.192 Sum_probs=76.0
Q ss_pred ccceeeeeeeEEEeC-CCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecC--CCcc
Q psy17173 441 LEEFYREDTLMKYDG-KSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYE--NTDD 517 (1108)
Q Consensus 441 ~r~li~eG~L~k~~~-~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~--d~~~ 517 (1108)
....+++|-|.|.++ ..+.++.|++.|.++.|.+.+..+.. ..++.++|.++.|.... +...
T Consensus 8 ~~~~~~~G~L~K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~---------------~~~g~i~L~~~~v~~~~~~~~~~ 72 (117)
T 2d9y_A 8 NAPVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEE---------------SILGSIPLLSFRVAAVQPSDNIS 72 (117)
T ss_dssp SCCCCEEEEEEEECTTSSSCEEEEEEEEETTEEEEESSTTCC---------------SCCEEEECSSCEEEECCTTTTCC
T ss_pred CCCeeEEEEEEEeCCCCCCCceEEEEEECCCEEEEECCCCCC---------------CcCCEEEeCCeEEEEcCccccCC
Confidence 357889999998873 45567899999999999998865432 23567888888776553 3345
Q ss_pred ccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17173 518 IKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMV 552 (1108)
Q Consensus 518 ~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l 552 (1108)
-.+.|+|...++..|.|.|.|++++++||++|..+
T Consensus 73 ~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~~ 107 (117)
T 2d9y_A 73 RKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEA 107 (117)
T ss_dssp CSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHT
T ss_pred CccEEEEEcCCCcEEEEEcCCHHHHHHHHHHHHHH
Confidence 57899998766779999999999999999999764
No 53
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.20 E-value=1.6e-05 Score=75.15 Aligned_cols=97 Identities=14% Similarity=0.165 Sum_probs=76.6
Q ss_pred cceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCe-EEeecCCCccccc
Q psy17173 442 EEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKV-EINDYENTDDIKN 520 (1108)
Q Consensus 442 r~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~-~I~d~~d~~~~~~ 520 (1108)
...+++|-|.|.+...+.++.|++.|.++.|.+.+..... ..++.++|.++ .|...++.+.-.+
T Consensus 6 ~~~~~~G~L~K~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~---------------~~~g~i~L~~~~~v~~~~~~~~~~~ 70 (115)
T 2dn6_A 6 SGVLKQGYMMKKGHRRKNWTERWFVLKPNIISYYVSEDLK---------------DKKGDILLDENCCVESLPDKDGKKC 70 (115)
T ss_dssp CSCSEEEEEEEECTTSSCEEEEEEEECSSCEEEESSTTCS---------------SEEEEECCCTTCEEEEECCCTTCCS
T ss_pred CCceEEEEEEecCCCCCCcEEeEEEEECCEEEEeCCCCCc---------------ccCcEEEecCcEEEEECCCCCCCee
Confidence 4788999999988766677899999999999999854431 24677888874 4544555555678
Q ss_pred cEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHHh
Q psy17173 521 AFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVNT 554 (1108)
Q Consensus 521 aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~~ 554 (1108)
.|.|... +..|.|.|.|+++++.||++|..+..
T Consensus 71 ~F~i~~~-~r~~~l~a~s~~e~~~Wi~ai~~~~~ 103 (115)
T 2dn6_A 71 LFLVKCF-DKTFEISASDKKKKQEWIQAIHSTIH 103 (115)
T ss_dssp EEEEECS-SCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EEEEEeC-CCEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 9999876 56899999999999999999977644
No 54
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=98.19 E-value=1.2e-05 Score=75.51 Aligned_cols=95 Identities=8% Similarity=0.102 Sum_probs=76.7
Q ss_pred ceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCccccccE
Q psy17173 443 EFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNAF 522 (1108)
Q Consensus 443 ~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~~aF 522 (1108)
..+++|-|.|.+...+.++.|++.|-++.|.+.+...... .++.|+|.++.+....+...-.+.|
T Consensus 7 ~~~~~G~L~K~~~~~~~Wk~RwfvL~~~~L~yyk~~~~~~---------------~~~~i~L~~~~~~~~~~~~~~~~~F 71 (109)
T 1wgq_A 7 GSTMSGYLYRSKGSKKPWKHLWFVIKNKVLYTYAASEDVA---------------ALESQPLLGFTVTLVKDENSESKVF 71 (109)
T ss_dssp SCSCEEEEEEESSTTSCCEEEEEEEETTEEEEESCTTCSS---------------CSEEEECSSEEEEECCCSSCSSSEE
T ss_pred CCeEEEEEEeCCCCCCCceeEEEEEeCCEEEEECCCCcCc---------------cCceEECCCCEEEECCCCCCCCcEE
Confidence 4578999998877666778999999999999988654321 2457888888888776655557999
Q ss_pred EeecCCCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17173 523 EIAPRDQPSIIIVTKSPEDKKSWFSDLIMV 552 (1108)
Q Consensus 523 ~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l 552 (1108)
+|...++..|.|.|.|+++++.||++|..+
T Consensus 72 ~i~~~~~~~~~~~a~s~~e~~~Wi~al~~a 101 (109)
T 1wgq_A 72 QLLHKGMVFYVFKADDAHSTQRWIDAFQEG 101 (109)
T ss_dssp EEEETTEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred EEEeCCCeEEEEECCCHHHHHHHHHHHHHH
Confidence 999776668999999999999999999765
No 55
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=98.17 E-value=1.3e-05 Score=77.29 Aligned_cols=97 Identities=16% Similarity=0.163 Sum_probs=77.0
Q ss_pred ccceeeeeeeEEEeC-CCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCC--cc
Q psy17173 441 LEEFYREDTLMKYDG-KSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENT--DD 517 (1108)
Q Consensus 441 ~r~li~eG~L~k~~~-~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~--~~ 517 (1108)
....+++|-|.|.+. ..+.++.||+.|-++.|.+.+..... ..++.|+|.++.|....+. ..
T Consensus 18 ~~~~~~~G~L~K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~---------------~~~g~i~L~~~~v~~~~~~~~~~ 82 (128)
T 2dkp_A 18 NAPVVRRGWLYKQDSTGMKLWKKRWFVLSDLCLFYYRDEKEE---------------GILGSILLPSFQIALLTSEDHIN 82 (128)
T ss_dssp TSCCCEEEEEEEECCSSSCCEEEEEEEEETTEEEEESSTTCC---------------SEEEEECGGGSEEEECCGGGCCS
T ss_pred CCCcEEEEEEEEeCCCCCCCceeEEEEEeCCEEEEECCCCCc---------------ccceEEEcCceEEEEcCCcccCC
Confidence 457889999998876 45567899999999999998855431 2467788888887665433 24
Q ss_pred ccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17173 518 IKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMV 552 (1108)
Q Consensus 518 ~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l 552 (1108)
-.+.|.|...++..|.|.|.|++|++.||++|..+
T Consensus 83 ~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a 117 (128)
T 2dkp_A 83 RKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDA 117 (128)
T ss_dssp SCSEEEEECSSSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHH
Confidence 56899999876678999999999999999999654
No 56
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=98.14 E-value=1.3e-05 Score=76.90 Aligned_cols=97 Identities=11% Similarity=0.150 Sum_probs=75.9
Q ss_pred eeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCcc------
Q psy17173 444 FYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDD------ 517 (1108)
Q Consensus 444 li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~------ 517 (1108)
-+++|-|.+.+...+.++.|++.|-++.|.+.|...... .-...+.|+|.++.|....+.+.
T Consensus 6 ~~k~G~L~Kk~~~~k~W~~rwfVL~~~~L~yyK~~~~~~------------d~~P~gsI~L~~c~v~~~~~~~~~~~~~~ 73 (120)
T 4a6h_A 6 EIKSGFLERRSKFLKSYSKGYYVLTPNFLHEFKTADRKK------------DLVPVMSLALSECTVTEHSRKNSTSSPNS 73 (120)
T ss_dssp CSEEEEEEEEETTTTEEEEEEEEECSSEEEEESSCCTTT------------CCSCSEEEEGGGEEEEEECCCCC------
T ss_pred ccEEEEEEEcCCCCCCCccEEEEEeCCEEEEEcCCCcCc------------CCCceEEEECCCCEEEEcccccccccccc
Confidence 688999999887777778999999999888887653211 11235688999999988765543
Q ss_pred --ccccEEeecCCC------CeEEEEeCCHHHHHHHHHHHHHH
Q psy17173 518 --IKNAFEIAPRDQ------PSIIIVTKSPEDKKSWFSDLIMV 552 (1108)
Q Consensus 518 --~~~aF~I~~~~~------~~~~l~a~s~eeK~~Wm~~L~~l 552 (1108)
-.+.|.|...+. ..|.|.|.|.+|+++||++|..+
T Consensus 74 ~~~~~~F~i~~~~~~~~~~~~~y~f~A~s~~e~~~Wv~aI~~~ 116 (120)
T 4a6h_A 74 TGSDAKFVLHAKQNGIIRRGHNWVFKADSYESMMSWFDNLKIL 116 (120)
T ss_dssp ---CCEEEEEESSSSSSCTTCEEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCcccCceEEEEEcCCHHHHHHHHHHHHHH
Confidence 577899987653 48999999999999999999875
No 57
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Probab=98.13 E-value=2.4e-05 Score=74.79 Aligned_cols=98 Identities=13% Similarity=0.104 Sum_probs=77.0
Q ss_pred cceeeeeeeEEEeC-CCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCC--ccc
Q psy17173 442 EEFYREDTLMKYDG-KSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENT--DDI 518 (1108)
Q Consensus 442 r~li~eG~L~k~~~-~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~--~~~ 518 (1108)
...+++|-|.|.++ ..+.++.|++.|-++.|.+.+..... ..++.|+|.++.|....+. ..-
T Consensus 9 ~~~~~~G~L~K~~~~~~~~WkkR~fvL~~~~L~yy~~~~~~---------------~~~g~i~l~~~~v~~~~~~~~~~~ 73 (123)
T 1upq_A 9 LPVHIRGWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSREE---------------SVLGSVLLPSYNIRPDGPGAPRGR 73 (123)
T ss_dssp SCEEEEEEEEEECSSSSCCEEEEEEEEETTEEEEESSTTCC---------------SCCEEEEGGGCEEEECCSSCTTSS
T ss_pred CCceEEEEEEeeCCCCCCCceeEEEEEeCCEEEEECCCCCc---------------ccceEEECCCCEEEECCCCccCCC
Confidence 46889999999875 44567899999999999998765432 2356778888888766532 345
Q ss_pred cccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHHh
Q psy17173 519 KNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVNT 554 (1108)
Q Consensus 519 ~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~~ 554 (1108)
.+.|.|...++..|.|.|.|+++++.||.+|..+..
T Consensus 74 ~~~f~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~~ 109 (123)
T 1upq_A 74 RFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRASR 109 (123)
T ss_dssp SSEEEEECTTSCCEEEECSSHHHHHHHHHHHHHHHC
T ss_pred cEEEEEECCCCeEEEEECCCHHHHHHHHHHHHHHHh
Confidence 789999887667999999999999999999987654
No 58
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Probab=98.13 E-value=1.4e-05 Score=76.95 Aligned_cols=98 Identities=13% Similarity=0.111 Sum_probs=77.6
Q ss_pred cceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCcccccc
Q psy17173 442 EEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNA 521 (1108)
Q Consensus 442 r~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~~a 521 (1108)
+..+++|-|.|.++..+.++.||+.|.++.|.+.+..... ..++.|+|.++.+....+..+..+.
T Consensus 16 ~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~---------------~~~g~i~L~~~~~v~~~~~~~~~~~ 80 (126)
T 1fao_A 16 SLGTKEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQMSP---------------EPIRILDLTECSAVQFDYSQERVNC 80 (126)
T ss_dssp CTTCEEEEEEEECSSSCCEEEEEEEEETTEEEEESSTTCS---------------SCSEEEEGGGCCEEEEECSSSSSSE
T ss_pred CCccEEEEEEEcCCCCCCcccEEEEEECCEEEEeCCCCCC---------------CceeEEEccceEEEEecccCCCCCE
Confidence 4678999999988766677899999999999998855432 2345788888876555555556789
Q ss_pred EEeecCCCCeEEEEeCCHHHHHHHHHHHHHHHhh
Q psy17173 522 FEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVNTK 555 (1108)
Q Consensus 522 F~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~~~ 555 (1108)
|.|... +..|.|.|.|+++++.|+.+|..+...
T Consensus 81 F~i~~~-~r~~~l~a~s~~e~~~Wi~al~~~i~~ 113 (126)
T 1fao_A 81 FCLVFP-FRTFYLCAKTGVEADEWIKILRWKLSQ 113 (126)
T ss_dssp EEEEET-TEEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred EEEEeC-CcEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 999875 668999999999999999999876543
No 59
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*
Probab=98.12 E-value=2.3e-05 Score=75.28 Aligned_cols=96 Identities=20% Similarity=0.277 Sum_probs=75.8
Q ss_pred ceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCccccccE
Q psy17173 443 EFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNAF 522 (1108)
Q Consensus 443 ~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~~aF 522 (1108)
..+++|-|.|.++..+.++.|++.|-++.|.+.+..... ..++.|+|.++.|....+. .-.+.|
T Consensus 4 ~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~---------------~~~g~i~L~~~~v~~~~~~-~~~~~f 67 (127)
T 1fgy_A 4 NPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDK---------------EPRGIIPLENLSIREVLDP-RKPNCF 67 (127)
T ss_dssp SCSEEEEEEEECSSSCCEEEEEEEEETTEEEEESSTTCS---------------SCSEEEECTTCEEEEECCS-SCSSEE
T ss_pred CCceEeEEEEECCCCCCeEEEEEEEECCEEEEeCCCCCC---------------CcceEEECCceEEEEccCC-CCCceE
Confidence 467899999988776778899999999999999854332 2345788888888776554 557899
Q ss_pred EeecCCC---------------------CeEEEEeCCHHHHHHHHHHHHHHHh
Q psy17173 523 EIAPRDQ---------------------PSIIIVTKSPEDKKSWFSDLIMVNT 554 (1108)
Q Consensus 523 ~I~~~~~---------------------~~~~l~a~s~eeK~~Wm~~L~~l~~ 554 (1108)
+|...++ ..|.|.|.|++|++.||++|..+..
T Consensus 68 ~i~~~~~~~~~~~~~~~~~~~~~v~~~~r~~~l~a~s~~e~~~Wi~al~~~i~ 120 (127)
T 1fgy_A 68 ELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASIS 120 (127)
T ss_dssp EEECSSSTTCCCCCEEECTTSCEEECCCSEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EEecCCccccccccccccCCcceecCCceEEEEECCCHHHHHHHHHHHHHHhc
Confidence 9986542 4799999999999999999987643
No 60
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.12 E-value=2.4e-05 Score=74.75 Aligned_cols=97 Identities=14% Similarity=0.192 Sum_probs=75.6
Q ss_pred ccceeeeeeeEEEeC-CCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecC--CCcc
Q psy17173 441 LEEFYREDTLMKYDG-KSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYE--NTDD 517 (1108)
Q Consensus 441 ~r~li~eG~L~k~~~-~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~--d~~~ 517 (1108)
....+++|-|.+.++ ..+.++.|++.|-++.|.+.+..... ..++.++|.++.|.... +...
T Consensus 19 ~~~~~~~G~L~K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~---------------~~~g~i~L~~~~v~~~~~~~~~~ 83 (122)
T 2yry_A 19 NAPVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEE---------------SILGSIPLLSFRVAAVQPSDNIS 83 (122)
T ss_dssp TCCEEEEEEEEEECCSSSCCEEEEEEEEETTEEEEESSTTCC---------------SCCEEEESTTCCCEECCTTCSCS
T ss_pred CCCccEEEEEEEECCCCCCCcEEEEEEEeCCEEEEECCCCCC---------------CcccEEEcCCCEEEEcCccccCC
Confidence 447899999998864 45567899999999999998765432 23567788887765543 3345
Q ss_pred ccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17173 518 IKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMV 552 (1108)
Q Consensus 518 ~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l 552 (1108)
-.+.|+|...++..|.|.|.|++++++||.+|..+
T Consensus 84 ~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a 118 (122)
T 2yry_A 84 RKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEA 118 (122)
T ss_dssp SSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred cccEEEEecCCCcEEEEEcCCHHHHHHHHHHHHHH
Confidence 57899998766779999999999999999999765
No 61
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.09 E-value=5.9e-06 Score=79.96 Aligned_cols=99 Identities=15% Similarity=0.221 Sum_probs=73.8
Q ss_pred ccceeeeeeeEEEeCCCCcceeEEEEeec--CeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCC---
Q psy17173 441 LEEFYREDTLMKYDGKSNRLTERKVYFFD--GVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENT--- 515 (1108)
Q Consensus 441 ~r~li~eG~L~k~~~~~~~~~er~~FLF~--d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~--- 515 (1108)
.+..+++|-|.|.+...+.++.||+.|.+ ..|.+.+..... ...++.|+|.++.|....+.
T Consensus 15 ~~~~~~~G~L~K~g~~~~~Wk~R~fvL~~d~~~L~yy~~~~~~--------------~~~~g~i~L~~~~v~~~~~~~~p 80 (129)
T 1x1g_A 15 SGTVVKQGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEE--------------NRPVGGFSLRGSLVSALEDNGVP 80 (129)
T ss_dssp CSEEEEEEEEEEECSSSSSEEEEEEEEEESSCEEEEECSSSCC--------------SSCSCCEESTTCCCEECCSSSSC
T ss_pred CCCEEEEEEEEEECCCCCCeeeEEEEEeCCCCeEEEeCCCCcC--------------CccceEEECcCCEEEEeCCCCCc
Confidence 35899999999988776777899999995 477777654111 12344677777666555443
Q ss_pred cc-----ccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17173 516 DD-----IKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVN 553 (1108)
Q Consensus 516 ~~-----~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~ 553 (1108)
+. -.+.|+|...++..|.|.|.|++|+++||++|..+.
T Consensus 81 ~~~~~~~~~~~F~I~~~~~r~~~l~a~s~~e~~~Wi~al~~~~ 123 (129)
T 1x1g_A 81 TGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKLT 123 (129)
T ss_dssp SSCSSCCCSSCEEECCTTCCCEEECCSSHHHHHHHHHHHHHHS
T ss_pred ccccCCCCCceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHH
Confidence 11 468999998766789999999999999999997764
No 62
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=98.08 E-value=1.1e-05 Score=74.69 Aligned_cols=91 Identities=14% Similarity=0.166 Sum_probs=70.5
Q ss_pred eeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCccccccEEee
Q psy17173 446 REDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNAFEIA 525 (1108)
Q Consensus 446 ~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~~aF~I~ 525 (1108)
++|-|.|.++..+.++.|++.|.++.|.+.+...... ...++.|+|..+.|....+ ..+.|.|.
T Consensus 1 ~eG~L~K~g~~~k~Wk~R~fvL~~~~L~Yy~~~~~~~-------------~~~~g~i~L~~~~v~~~~~---~~~~F~i~ 64 (103)
T 3rcp_A 1 MEGVLYKWTNYLTGWQPRWFVLDNGILSYYDSQDDVC-------------KGSKGSIKMAVCEIKVHSA---DNTRMELI 64 (103)
T ss_dssp CEEEEEEECCTTTCEEEEEEEEETTEEEEESSCC----------------CCCSCEEEGGGCEEECCTT---CSSEEEEE
T ss_pred CceEEEEccCCCCCeeceEEEEECCEEEEEecCCccc-------------CCcccEEEeeeeEEEEcCC---CCceEEEE
Confidence 4788888887666778999999999999998765311 1124678888888764433 26799999
Q ss_pred cCCCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17173 526 PRDQPSIIIVTKSPEDKKSWFSDLIMV 552 (1108)
Q Consensus 526 ~~~~~~~~l~a~s~eeK~~Wm~~L~~l 552 (1108)
..++..|.|.|.|++|++.||++|..+
T Consensus 65 ~~~~r~~~l~a~s~~e~~~Wi~al~~a 91 (103)
T 3rcp_A 65 IPGEQHFYMKAVNAAERQRWLVALGSS 91 (103)
T ss_dssp ETTTEEEEEECSSHHHHHHHHHHHHTT
T ss_pred eCCCCEEEEECCCHHHHHHHHHHHHHH
Confidence 876789999999999999999999654
No 63
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*
Probab=98.05 E-value=3.6e-05 Score=78.47 Aligned_cols=99 Identities=11% Similarity=0.084 Sum_probs=74.4
Q ss_pred ceeeeeeeEEEeCCC-----CcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecC---C
Q psy17173 443 EFYREDTLMKYDGKS-----NRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYE---N 514 (1108)
Q Consensus 443 ~li~eG~L~k~~~~~-----~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~---d 514 (1108)
.+|++|-|.|.+.++ +.++.|+|.|-++.|.|.|...... .....++.|+|.++.+.+.. +
T Consensus 2 ~vikeG~L~Kr~~~~~~~~~k~WKkRwFVL~~~~L~Yyk~~~~~~-----------~~~~~~G~I~L~~~~~ve~~~~~~ 70 (169)
T 1btk_A 2 AVILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERG-----------RRGSKKGSIDVEKITCVETVVPEK 70 (169)
T ss_dssp CCCEEEEEEEECCCSSTTCCCCEEEEEEEECSSEEEEEEEETTTT-----------EEEEEEEEEEGGGEEEEEECCCCS
T ss_pred ceEEEEEEEEecCCCCCcccCCCceEEEEEcCCEEEEEecCCccC-----------CCCceeeEEECcceEEEEeccCCC
Confidence 478999999976542 3468999999999999999642211 15678899999998765433 2
Q ss_pred Ccc--cc---------------------ccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17173 515 TDD--IK---------------------NAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVN 553 (1108)
Q Consensus 515 ~~~--~~---------------------~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~ 553 (1108)
... .. +.|+|...+ .+|.|+|.|++|+++||++|..+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~F~I~t~~-rt~yl~A~s~~E~~eWi~aI~~~i 131 (169)
T 1btk_A 71 NPPPERQIPRRGEESSEMEQISIIERFPYPFQVVYDE-GPLYVFSPTEELRKRWIHQLKNVI 131 (169)
T ss_dssp SCCGGGCC---------CCTTHHHHCCCEEEEEEETT-CCEEEEESCHHHHHHHHHHHHHHH
T ss_pred CcchhcccccccCcccccccccccccccccEEEEeCC-ceEEEEcCCHHHHHHHHHHHHHHH
Confidence 211 12 789999764 578999999999999999997654
No 64
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Probab=98.04 E-value=4.1e-05 Score=76.08 Aligned_cols=98 Identities=16% Similarity=0.201 Sum_probs=76.8
Q ss_pred cceeeeeeeEEEeCCC----CcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCC---
Q psy17173 442 EEFYREDTLMKYDGKS----NRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYEN--- 514 (1108)
Q Consensus 442 r~li~eG~L~k~~~~~----~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d--- 514 (1108)
+..+++|-|.|.+.+. +.++.|++.|-++.|.+.+..... ..++.|+|.++.|....+
T Consensus 15 ~~~~~~G~L~K~g~~~~~~~k~WkkR~fvL~~~~L~yyk~~~~~---------------~~~g~i~L~~~~v~~~~~~~~ 79 (148)
T 1u5f_A 15 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDK---------------QQKGEFAIDGYDVRMNNTLRK 79 (148)
T ss_dssp SSEEEEEEEEEECCCSSCSSCSEEEEEEEEETTEEEEESSTTCS---------------SCSEEEECTTCEEEECTTSCS
T ss_pred CCccEEEEEEEeCCCCCCcCCCceeEEEEEECCEEEEEcCCCCc---------------ccceEEEcCCcEEEECCCccc
Confidence 4789999999987643 467899999999999998765432 235678888888876543
Q ss_pred CccccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHHh
Q psy17173 515 TDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVNT 554 (1108)
Q Consensus 515 ~~~~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~~ 554 (1108)
...-.+.|.|...++..|.|.|.|.++++.||.+|..+..
T Consensus 80 ~~~~~~~F~I~~~~~r~~~l~a~s~~e~~~Wi~al~~~i~ 119 (148)
T 1u5f_A 80 DGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFILQ 119 (148)
T ss_dssp STTGGGEEEEECTTSCEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred CCCCccEEEEECCCCcEEEEECCCHHHHHHHHHHHHHHHH
Confidence 2233589999987667999999999999999999977643
No 65
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.04 E-value=2.9e-05 Score=73.55 Aligned_cols=93 Identities=17% Similarity=0.215 Sum_probs=71.5
Q ss_pred ccceeeeeeeEEEeC-CCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCcccc
Q psy17173 441 LEEFYREDTLMKYDG-KSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIK 519 (1108)
Q Consensus 441 ~r~li~eG~L~k~~~-~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~ 519 (1108)
....+++|-|.|.++ ..+.++.|++.|.++.|.+.+...... .++.|+|..+......+ .
T Consensus 5 ~~~~~~~G~L~K~~~~~~~~WkkR~fvL~~~~L~yy~~~~~~~---------------~~g~i~l~~~~~v~~~~----~ 65 (115)
T 2cod_A 5 SSGKVKSGWLDKLSPQGKRMFQKRWVKFDGLSISYYNNEKEMY---------------SKGIIPLSAISTVRVQG----D 65 (115)
T ss_dssp CSCCCEEEEEEECCSSSSSCCEEEEEEECSSEEEEEESSCCSS---------------CCCEEETTTEEEEEEET----T
T ss_pred CCCccEEEEEEEcCCCCCCCCceEEEEEECCEEEEEcCCCCcc---------------cCCEEECCcceEEEeCC----C
Confidence 357889999998876 455678999999999999998765421 24567777765433333 5
Q ss_pred ccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17173 520 NAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVN 553 (1108)
Q Consensus 520 ~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~ 553 (1108)
+.|.|... +..|.|.|.|.+++++||++|..+.
T Consensus 66 ~~F~i~~~-~r~~~l~a~s~~e~~~Wi~~l~~~~ 98 (115)
T 2cod_A 66 NKFEVVTT-QRTFVFRVEKEEERNDWISILLNAL 98 (115)
T ss_dssp TEEEEEES-SCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CEEEEEeC-CcEEEEECCCHHHHHHHHHHHHHHH
Confidence 89999854 6689999999999999999997654
No 66
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}
Probab=98.01 E-value=2.3e-05 Score=79.60 Aligned_cols=96 Identities=16% Similarity=0.213 Sum_probs=70.6
Q ss_pred cceeeeeeeEEEeCCCC-----cceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCC-
Q psy17173 442 EEFYREDTLMKYDGKSN-----RLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENT- 515 (1108)
Q Consensus 442 r~li~eG~L~k~~~~~~-----~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~- 515 (1108)
...|+||-|.|-+.+++ .++.|+|.|-++.|.+.+...... ..++.|+|..+......+.
T Consensus 13 ~~~i~EG~L~Kr~~~kk~~~~knWKkRwFVL~~~~L~Yyk~~~~~~--------------~~~G~I~L~~~~~v~~~~~~ 78 (164)
T 2lul_A 13 FNTILEEILIKRSQQKKKTSPLNYKERLFVLTKSMLTYYEGRAEKK--------------YRKGFIDVSKIKCVEIVKND 78 (164)
T ss_dssp SSEEEEEEEEEECCCCSSSCCCCEEEEEEEEESSEEEEECCCSSSC--------------CCCCEEEGGGCCEEEECCCC
T ss_pred CCeeEEEEEEEecCCCCCCCCCCceeEEEEEECCEEEEEeccCccc--------------ccccEEEEeeeEEEEecccc
Confidence 47899999998876544 368999999999999998643311 1244677776654433221
Q ss_pred -----ccccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17173 516 -----DDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMV 552 (1108)
Q Consensus 516 -----~~~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l 552 (1108)
....+.|.|... +.+|.|+|.|++|+++||++|..+
T Consensus 79 ~~~~~~~~~~~f~i~t~-~rt~~l~A~s~~e~~~Wi~aL~~~ 119 (164)
T 2lul_A 79 DGVIPCQNKYPFQVVHD-ANTLYIFAPSPQSRDLWVKKLKEE 119 (164)
T ss_dssp SSSCCSSSCSEEEEECS-SCEEEEECSSHHHHHHHHHHHHHH
T ss_pred ccCcccccceeEEEecC-CcEEEEECCCHHHHHHHHHHHHHH
Confidence 234678999876 468999999999999999999765
No 67
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}
Probab=97.99 E-value=1.5e-05 Score=72.58 Aligned_cols=91 Identities=18% Similarity=0.294 Sum_probs=69.2
Q ss_pred eeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCccccccEEe
Q psy17173 445 YREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNAFEI 524 (1108)
Q Consensus 445 i~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~~aF~I 524 (1108)
.++|-|.|.++.-+.++.|++.|-++.|.+.+...... ....+.+++..+.+..... ..+.|.|
T Consensus 2 ~k~G~L~K~g~~~k~WkkR~FvL~~~~L~Yy~~~~~~~-------------~~~~~~i~l~~~~~~~~~~---~~~~F~i 65 (94)
T 2rsg_A 2 ERCGVLSKWTNYIHGWQDRWVVLKNNALSYYKSEDETE-------------YGCRGSICLSKAVITPHDF---DECRFDI 65 (94)
T ss_dssp CEEEEEEEESSSTTCEEEEEEEEETTEEEEESSTTGGG-------------TCCSEEEETTTCEEEECSS---CSSEEEE
T ss_pred CEEEEEEEeCCCCCCceEEEEEEECCEEEEEEeccccc-------------ccceeeEecceeeeecCcc---cceeEEE
Confidence 57899998877666678999999999999987654321 1223567777777754332 3578999
Q ss_pred ecCCCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17173 525 APRDQPSIIIVTKSPEDKKSWFSDLIMV 552 (1108)
Q Consensus 525 ~~~~~~~~~l~a~s~eeK~~Wm~~L~~l 552 (1108)
... +.+|.|.|.|++|+++||++|.+.
T Consensus 66 ~~~-~r~~~l~A~s~~e~~~Wi~aLq~A 92 (94)
T 2rsg_A 66 SVN-DSVWYLRAQDPDHRQQWIDAIEQH 92 (94)
T ss_dssp EET-TEEEEEECCSSCCTHHHHHHHHHH
T ss_pred EeC-CeEEEEECCCHHHHHHHHHHHHhh
Confidence 875 568999999999999999999764
No 68
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.95 E-value=2.8e-05 Score=74.36 Aligned_cols=99 Identities=14% Similarity=0.163 Sum_probs=74.3
Q ss_pred ceeeeeeeEEEeCCCCcceeEEEEee--cCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCccccc
Q psy17173 443 EFYREDTLMKYDGKSNRLTERKVYFF--DGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKN 520 (1108)
Q Consensus 443 ~li~eG~L~k~~~~~~~~~er~~FLF--~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~~ 520 (1108)
..+++|-|.|.+...+.++.|++.|- +..|.+.+..... ....++.|+|.++.|.... ...+
T Consensus 7 ~~~~~G~L~K~~~~~~~Wk~R~fvL~~~~~~L~Yyk~~~~~-------------~~~~~g~I~L~~~~v~~~~---~~~~ 70 (120)
T 2d9x_A 7 GENVYGYLMKYTNLVTGWQYRFFVLNNEAGLLEYFVNEQSR-------------NQKPRGTLQLAGAVISPSD---EDSH 70 (120)
T ss_dssp CCCCEEEEEEEEETTTEEEEEEEEECTTTCEEEEESSGGGS-------------SSCCSEEEECTTCCEECCS---SSSS
T ss_pred CCcEEEEEEecCCCCCCceEEEEEEECCCCEEEEEecCccc-------------CCCccceEEcceEEEEecC---CCCC
Confidence 56789999988776667789999998 4678787754431 1234567888888765422 2358
Q ss_pred cEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHHhhHH
Q psy17173 521 AFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVNTKSM 557 (1108)
Q Consensus 521 aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~~~s~ 557 (1108)
.|.|...++..|.|.|.|++|++.||++|..+.....
T Consensus 71 ~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~~~~~~~ 107 (120)
T 2d9x_A 71 TFTVNAASGEQYKLRATDAKERQHWVSRLQICTQHHT 107 (120)
T ss_dssp CEEECCSSSCCEEECCSSHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHHhh
Confidence 9999987667999999999999999999987654443
No 69
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=97.94 E-value=3.3e-05 Score=76.82 Aligned_cols=101 Identities=19% Similarity=0.138 Sum_probs=77.2
Q ss_pred ccceeeeeeeEEEeCCC------CcceeEEEEeecC-----eEEEEecCCCCccccccccccCcceeEEEEEeeccCeEE
Q psy17173 441 LEEFYREDTLMKYDGKS------NRLTERKVYFFDG-----VLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEI 509 (1108)
Q Consensus 441 ~r~li~eG~L~k~~~~~------~~~~er~~FLF~d-----~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I 509 (1108)
....+++|-|.|.+.++ +.++.|+|.|-++ .|.+.+..... -..++.|+|.++.+
T Consensus 15 ~~~~~~~G~L~K~~~~~~~~~~~k~Wk~RwfvL~~~~~g~~~L~yy~~~~~~--------------~~~~g~I~L~~~~~ 80 (150)
T 1wg7_A 15 KGGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKIS--------------KEPKGSIFLDSCMG 80 (150)
T ss_dssp SCCCCCEEEEEECCCCSSHHHHHSSCEEEEEEEEECSSSCEEEEEESSSCCS--------------SCCSEEECTTTCCE
T ss_pred CCCeeEEEEEEEecCCccccccccCeeEEEEEEecCCCCceEEEEECCCCCC--------------CCcCcEEecccCEE
Confidence 46789999999987432 3567999999987 88888765421 12345788888777
Q ss_pred eecCCCccccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHHhhH
Q psy17173 510 NDYENTDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVNTKS 556 (1108)
Q Consensus 510 ~d~~d~~~~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~~~s 556 (1108)
....+ ..-.+.|+|...+...|.|.|.|.+++..||.+|..+....
T Consensus 81 ~~~~~-~~~~~~F~i~~~~~r~~~l~A~s~~e~~~Wi~al~~ai~~~ 126 (150)
T 1wg7_A 81 VVQNN-KVRRFAFELKMQDKSSYLLAADSEVEMEEWITILNKILQLN 126 (150)
T ss_dssp ECCCC-SSCTTEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred EecCC-CCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHHHHHHHhh
Confidence 65433 35678999998876799999999999999999999875433
No 70
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1
Probab=97.93 E-value=3.5e-05 Score=73.84 Aligned_cols=98 Identities=15% Similarity=0.125 Sum_probs=73.7
Q ss_pred ccceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecC---CCcc
Q psy17173 441 LEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYE---NTDD 517 (1108)
Q Consensus 441 ~r~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~---d~~~ 517 (1108)
....+++|-|.|.++..+.++.||+.|.++.|.+.+..... ..++.|+|.++...... +...
T Consensus 11 ~~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~---------------~~~g~i~l~~~~~v~~~~~~~~~~ 75 (125)
T 1eaz_A 11 DSAVIKAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELEK---------------EPLRVIPLKEVHKVQECKQSDIMM 75 (125)
T ss_dssp -CCCSEEEEEEEECTTTCCEEEEEEEECSSEEEEESSTTCS---------------SCSEEEEGGGCCEEEECTTHHHHT
T ss_pred CCCccEEEEEEEeCCCCCCcceEEEEEeCCEEEEEcCCCCC---------------cceeEEEcccceEEeeccccccCC
Confidence 35788999999987766677899999999999998865432 12456777776543322 1223
Q ss_pred ccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHHh
Q psy17173 518 IKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVNT 554 (1108)
Q Consensus 518 ~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~~ 554 (1108)
-.+.|.|... +..|.|.|.|++++++||.+|..+..
T Consensus 76 ~~~~F~i~~~-~r~~~l~a~s~~e~~~W~~al~~~i~ 111 (125)
T 1eaz_A 76 RDNLFEIVTT-SRTFYVQADSPEEMHSWIKAVSGAIV 111 (125)
T ss_dssp CSSEEEEECS-SCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEeC-CcEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 4789999865 56899999999999999999977644
No 71
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.93 E-value=5.4e-05 Score=73.55 Aligned_cols=97 Identities=12% Similarity=0.197 Sum_probs=68.0
Q ss_pred cceeeeeeeEEEeCCCCcceeEEEEee-cCeEEEEecCCCCccccccccccCcceeEEEEEeeccC--eEEe--------
Q psy17173 442 EEFYREDTLMKYDGKSNRLTERKVYFF-DGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRK--VEIN-------- 510 (1108)
Q Consensus 442 r~li~eG~L~k~~~~~~~~~er~~FLF-~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~--~~I~-------- 510 (1108)
...+++|-|.|.+...+.++.|+|.|. ++.|.+.+...... .++.+.+.. ..|.
T Consensus 6 ~~v~~~G~L~K~g~~~k~WkkRwFVL~~~~~L~Yyk~~~~~~---------------~~g~i~l~~~~~~i~~~~~~~~v 70 (130)
T 2d9v_A 6 SGLVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQD---------------EEDRVVIHFNVRDIKVGQECQDV 70 (130)
T ss_dssp CCEEEEEEEEEECSSSCCEEEEEEEEETTTEEEEESSSSTTS---------------EEEEEECTTTEEEEEEGGGCSSC
T ss_pred CceeEEEEEEeecCccCCceeeEEEEccCCEEEEEeCCCCCC---------------cCceEecccceeEEecccccccc
Confidence 478899999998776667789999995 77888877554321 223333321 1111
Q ss_pred ecCCCccccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17173 511 DYENTDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVN 553 (1108)
Q Consensus 511 d~~d~~~~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~ 553 (1108)
..++...-++.|+|...++.+|.|+|.|++|+++||++|..+.
T Consensus 71 ~~~~~~~~~~~F~I~~~~~r~~~l~A~s~~e~~~Wi~al~~a~ 113 (130)
T 2d9v_A 71 QPPEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALMEAN 113 (130)
T ss_dssp CCCSSCCTTTEEEEEETTSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCcEEEEEeCCCCEEEEEcCCHHHHHHHHHHHHHHH
Confidence 1223334468999998766799999999999999999997643
No 72
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1
Probab=97.92 E-value=5.8e-05 Score=71.38 Aligned_cols=95 Identities=16% Similarity=0.126 Sum_probs=72.0
Q ss_pred cceeeeeeeEEEeCCCCcceeEEEEee--cCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCC-----
Q psy17173 442 EEFYREDTLMKYDGKSNRLTERKVYFF--DGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYEN----- 514 (1108)
Q Consensus 442 r~li~eG~L~k~~~~~~~~~er~~FLF--~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d----- 514 (1108)
...+++|-|.|.++..+.++.|++.|. ++.|.+.+..... ..++.|+|..+.+....+
T Consensus 6 ~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~~~L~yy~~~~~~---------------~~~g~i~L~~~~~v~~~~~~~~~ 70 (117)
T 1v5u_A 6 SGRSYEGILYKKGAFMKPWKARWFVLDKTKHQLRYYDHRMDT---------------ECKGVIDLAEVEAVAPGTPTIGA 70 (117)
T ss_dssp CSSSEEEEEEECCCSSSCCEEEEEEEETTTTEEEEESSSSCS---------------SCCCEEEGGGEEEEECCCCCTTS
T ss_pred CCccEEEEEEecCCCCCCceeeEEEEECCCCEEEEeecCCCC---------------ccceEEEccCcEEEeecCccccc
Confidence 356789999998776667789999999 8899988765432 134567888877655432
Q ss_pred --CccccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17173 515 --TDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMV 552 (1108)
Q Consensus 515 --~~~~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l 552 (1108)
...-.+.|.|... +..|.|.|.|+++++.||++|..+
T Consensus 71 ~~~~~~~~~F~i~~~-~r~~~l~a~s~~e~~~Wi~al~~~ 109 (117)
T 1v5u_A 71 PKTVDEKAFFDVKTT-RRVYNFCAQDVPSAQQWVDRIQSC 109 (117)
T ss_dssp CSSSCTTTCEEEEES-SCEEEEECSSHHHHHHHHHHHHTT
T ss_pred cccCCCCeEEEEECC-CceEEEECCCHHHHHHHHHHHHHH
Confidence 2334589999764 668999999999999999999654
No 73
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=97.91 E-value=6e-05 Score=72.22 Aligned_cols=93 Identities=12% Similarity=0.148 Sum_probs=70.0
Q ss_pred ceeeeeeeEEEeCC-CCcceeEEEEeecCeEEEEe----cCCCCccccccccccCcceeEEEEEeeccCeEEeec---CC
Q psy17173 443 EFYREDTLMKYDGK-SNRLTERKVYFFDGVLILCK----SNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDY---EN 514 (1108)
Q Consensus 443 ~li~eG~L~k~~~~-~~~~~er~~FLF~d~Ll~~k----~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~---~d 514 (1108)
...++|-|.|.++. -+.++.|++.|=+++|-+.| ...... -.+.|+|.++.|... ++
T Consensus 7 n~~~~G~L~KqG~~~~K~WKrRwFVL~~~~LyYfk~~~~~~~~~~---------------p~G~I~L~g~tV~~~~~~~~ 71 (126)
T 1wi1_A 7 GMKHSGYLWAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAE---------------PQELLQLDGYTVDYTDPQPG 71 (126)
T ss_dssp CEEEEEEEEEECSSSCCSCEEEEEEEEEEETTEEEEEECCSSSSC---------------CSEEEECSSCEEEECCCCSS
T ss_pred CCceeEEEEEeCCCcccccceEEEEEeCCEEEEEEcccccccCCC---------------CceEEECCCcEEEEecCCcc
Confidence 46789999998773 35678899999999888877 332211 236788888887633 23
Q ss_pred CccccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHH
Q psy17173 515 TDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIM 551 (1108)
Q Consensus 515 ~~~~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~ 551 (1108)
...-+++|++... +.+|.|.|.|++|+..||++|..
T Consensus 72 ~~~~k~~F~~v~~-~~ty~~~Adseee~~~WikAi~~ 107 (126)
T 1wi1_A 72 LEGGRAFFNAVKE-GDTVIFASDDEQDRILWVQAMYR 107 (126)
T ss_dssp CCSCSSEEEEECS-SCEEEEECSSHHHHHHHHHHHHH
T ss_pred cccCceEEEEecC-CceEEEEcCCHHHHHHHHHHHHH
Confidence 3346799999876 45799999999999999999964
No 74
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A
Probab=97.90 E-value=4.8e-05 Score=71.53 Aligned_cols=97 Identities=18% Similarity=0.219 Sum_probs=68.1
Q ss_pred ceeeeeeeEEEeCCCCcceeEEEEee-cCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeE--------Eee--
Q psy17173 443 EFYREDTLMKYDGKSNRLTERKVYFF-DGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVE--------IND-- 511 (1108)
Q Consensus 443 ~li~eG~L~k~~~~~~~~~er~~FLF-~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~--------I~d-- 511 (1108)
..+++|-|.|.++..+.++.|++.|. ++.|.+.+..... ..++.+++.... |..
T Consensus 4 ~~~~~G~L~K~g~~~k~WkkR~fvL~~~~~L~yyk~~~~~---------------~~~g~i~l~~~~i~l~~~~~v~~v~ 68 (112)
T 3aj4_A 4 AFVKSGWLLRQSTILKRWKKNWFDLWSDGHLIYYDDQTRQ---------------NIEDKVHMPMDCINIRTGQECRDTQ 68 (112)
T ss_dssp SCSEEEEEEEECSSSCCEEEEEEEECTTSEEEEESSTTCC---------------SEEEEEEHHHHEEEEEEGGGCCSCC
T ss_pred ceeEEEEEEeeCCCCCCeeceEEEEeeCCEEEEEcCCCCC---------------CCCccccccccceeecccccccccC
Confidence 46789999998776667789999994 5577777654432 234455554422 111
Q ss_pred cCCCccccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHHh
Q psy17173 512 YENTDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVNT 554 (1108)
Q Consensus 512 ~~d~~~~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~~ 554 (1108)
.++...-.+.|.|...++..|.|.|.|++|++.||++|..+++
T Consensus 69 ~~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~~ 111 (112)
T 3aj4_A 69 PPDGKSKDCMLQIVCRDGKTISLCAESTDDCLAWKFTLQDSRT 111 (112)
T ss_dssp CSTTCCGGGEEEEEETTSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcCcEEEEEecCCcEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 2233333679999976678999999999999999999987653
No 75
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=97.88 E-value=5.1e-05 Score=70.91 Aligned_cols=94 Identities=15% Similarity=0.128 Sum_probs=69.9
Q ss_pred cceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCcccccc
Q psy17173 442 EEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNA 521 (1108)
Q Consensus 442 r~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~~a 521 (1108)
...+++|-|.|. ..+.++.|++.|-++.|.+.+..... -.-...+.+..+.|....+ ..-++.
T Consensus 6 ~~~~~~G~L~K~--~~k~Wk~RwfvL~~~~L~yyk~~~~~--------------~~~~~~i~l~~~~v~~~~~-~~~~~~ 68 (107)
T 2cof_A 6 SGLETSSYLNVL--VNSQWKSRWCSVRDNHLHFYQDRNRS--------------KVAQQPLSLVGCEVVPDPS-PDHLYS 68 (107)
T ss_dssp CCCTTCCEEEEE--ETTEEEEEEEEECSSCEEEECSSTTC--------------SEEEEEECTTTCEEECCCB-TTBSCE
T ss_pred CCCcEeEEEEEe--cCCCcceEEEEEECCEEEEEeCCccc--------------CCCeeEEeccceEEEECCC-CCCCeE
Confidence 356788999887 44456899999999999888865431 1223456667766654333 345789
Q ss_pred EEeecCCCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17173 522 FEIAPRDQPSIIIVTKSPEDKKSWFSDLIMV 552 (1108)
Q Consensus 522 F~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l 552 (1108)
|+|...++.+|.|.|.|++|+++||++|..+
T Consensus 69 F~i~~~~~r~~~l~A~s~~e~~~Wi~al~~~ 99 (107)
T 2cof_A 69 FRILHKGEELAKLEAKSSEEMGHWLGLLLSE 99 (107)
T ss_dssp EEEEETTEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred EEEEeCCCeEEEEEcCCHHHHHHHHHHHHHH
Confidence 9999866668999999999999999999754
No 76
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=97.87 E-value=7.9e-05 Score=72.53 Aligned_cols=96 Identities=19% Similarity=0.189 Sum_probs=72.4
Q ss_pred cceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCcccccc
Q psy17173 442 EEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNA 521 (1108)
Q Consensus 442 r~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~~a 521 (1108)
...+++|-|.|.+ ..+.++.|++.|=++.|.+.|..+.. .-++.|+|.++.|.+..+. .-.+.
T Consensus 6 ~~v~k~GwL~K~g-~~k~WkrRWfVLk~~~L~yyk~~~~~---------------~p~G~I~L~~~~v~~~~~~-~~~~~ 68 (130)
T 1v88_A 6 SGIVMADWLKIRG-TLKSWTKLWCVLKPGVLLIYKTQKNG---------------QWVGTVLLNACEIIERPSK-KDGFC 68 (130)
T ss_dssp SSCCEEEEEEECC-SSSSCEEEEEEEETTEEEEESCSSSC---------------CCCEEEECSSCEECCCCTT-TSSCE
T ss_pred CceEEEeEEEEeC-CCCCceEEEEEEECCEEEEECCCCCC---------------CceEEEEcCCCEEEECCCC-CCCeE
Confidence 3678999999855 55567899999999999998866532 2356788888888655432 33589
Q ss_pred EEeecCCC-----------------------CeEEEEeCCHHHHHHHHHHHHHHHh
Q psy17173 522 FEIAPRDQ-----------------------PSIIIVTKSPEDKKSWFSDLIMVNT 554 (1108)
Q Consensus 522 F~I~~~~~-----------------------~~~~l~a~s~eeK~~Wm~~L~~l~~ 554 (1108)
|+|...+. ..|.|.|.|++|+++||++|..+..
T Consensus 69 F~i~~~~~~~i~~~~g~~~~~~g~~~~~~~~~~~~f~A~s~~e~~~Wi~ai~~a~~ 124 (130)
T 1v88_A 69 FKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELALK 124 (130)
T ss_dssp EEEECTTCCCCSCSSCTTSCSCSCCCSCCCSSCCEEECSSHHHHHHHHHHHHHHHT
T ss_pred EEEEcCCccccccccCCcccccccccccCCceEEEEECCCHHHHHHHHHHHHHHHh
Confidence 99985432 1389999999999999999987643
No 77
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=97.86 E-value=9.6e-05 Score=69.90 Aligned_cols=93 Identities=17% Similarity=0.230 Sum_probs=66.5
Q ss_pred eeeeeEEEeC----CCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEe--ecCCCcccc
Q psy17173 446 REDTLMKYDG----KSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEIN--DYENTDDIK 519 (1108)
Q Consensus 446 ~eG~L~k~~~----~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~--d~~d~~~~~ 519 (1108)
++|-|.+-.+ ..+.++.||+.|=++.|.+.|..+.... .+.++|.+..+. ...+...-+
T Consensus 2 keG~L~kK~g~~~~~~k~Wk~rwfvL~~~~L~~yk~~~~~~p---------------~~~i~l~~~~~~~~~~~~~~~r~ 66 (112)
T 3cxb_B 2 KEGMLHYKAGTSYLGKEHWKTCFVVLSNGILYQYPDRTDVIP---------------LLSVNMGGEQCGGCRRANTTDRP 66 (112)
T ss_dssp EEEEEEECCSCCCSSCCCCEEEEEEEETTEEEEESSSSCCSC---------------SEEEETTC-CEEEEEECCCSSCT
T ss_pred ceEEEEEeCCCCCCCCCCceEEEEEEECCEEEEECCCCCCCc---------------cceEEecCCEEEeeeccCCCCCC
Confidence 5788875443 3455689999999999999886643221 234666654333 233444557
Q ss_pred ccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17173 520 NAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVN 553 (1108)
Q Consensus 520 ~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~ 553 (1108)
|+|+|...++..|.|+|.|+++.++||.+|..+.
T Consensus 67 ~~F~l~~~~~~~y~f~A~s~ee~~~Wi~ai~~~~ 100 (112)
T 3cxb_B 67 HAFQVILSDRPCLELSAESEAEMAEWMQHLCQAV 100 (112)
T ss_dssp TEEEEEETTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHh
Confidence 9999998778899999999999999999997543
No 78
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=97.86 E-value=0.00011 Score=73.20 Aligned_cols=94 Identities=14% Similarity=0.150 Sum_probs=72.9
Q ss_pred ceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCC-Ccccccc
Q psy17173 443 EFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYEN-TDDIKNA 521 (1108)
Q Consensus 443 ~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d-~~~~~~a 521 (1108)
..+++|-|.|.++.-+.++.|+|.|=++.|.+.|...... ..+.|+|.++.+....+ .+...+.
T Consensus 17 pv~keG~L~Kkg~~~k~WkrRWFvLk~~~L~Yyk~~~d~~---------------~~g~I~L~~~~~~~~~~~~~~~~~~ 81 (149)
T 1x1f_A 17 PLYFEGFLLIKRSGYREYEHYWTELRGTTLFFYTDKKSII---------------YVDKLDIVDLTCLTEQNSTEKNCAK 81 (149)
T ss_dssp CEEEEEEEEEECTTCCSCEEEEEEEETTEEEEESCSSCSS---------------CSEECCCSSCCEEEECCCTTSCCCE
T ss_pred CccEEEEEEEeCCCCCCceeEEEEEcCCEEEEEeCCCccc---------------cCcEEECCCceEEeeccCCCCcCcE
Confidence 5899999999988777788999999999999988765422 23577888776652221 1223589
Q ss_pred EEeecCCCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17173 522 FEIAPRDQPSIIIVTKSPEDKKSWFSDLIMV 552 (1108)
Q Consensus 522 F~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l 552 (1108)
|+|... +.+|.|+|.|++|++.||++|..+
T Consensus 82 F~I~t~-~r~~~f~A~s~ee~~eWi~aI~~v 111 (149)
T 1x1f_A 82 FTLVLP-KEEVQLKTENTESGEEWRGFILTV 111 (149)
T ss_dssp EEEECS-SCCEEEECSSHHHHHHHHHHHHHH
T ss_pred EEEEcC-CCEEEEEcCCHHHHHHHHHHHHHH
Confidence 999876 458999999999999999999765
No 79
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A
Probab=97.85 E-value=0.00013 Score=69.32 Aligned_cols=93 Identities=17% Similarity=0.186 Sum_probs=74.1
Q ss_pred eeeeeeeEEE-eCCCC-cceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCc-cccc
Q psy17173 444 FYREDTLMKY-DGKSN-RLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTD-DIKN 520 (1108)
Q Consensus 444 li~eG~L~k~-~~~~~-~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~-~~~~ 520 (1108)
.|++|-|.+. ++.-+ .+++|.|.|=++.|.+.|-...+. -++.|+|.++.|++++++. .-++
T Consensus 12 VirkGWL~k~~~g~~k~~wk~rWFVLt~~~L~yyKd~~eke---------------~~G~IpL~~~~vr~v~~~~~~rk~ 76 (125)
T 1dyn_A 12 VIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKE---------------KKYMLSVDNLKLRDVEKGFMSSKH 76 (125)
T ss_dssp EEEEEEEEESCCCGGGTSSEEEEEEEESSEEEEESSTTCSC---------------EEEEEECTTEEEEECCSCSSSSCE
T ss_pred eEEEEEEEEecCccccCCceeeEEEEeccceeeecCCcccc---------------cceEEECCCceEeccCCCCCCCce
Confidence 7899999984 33222 257999999999999999776433 3668999999999988752 3578
Q ss_pred cEEeecCCC-------CeEEEEeCCHHHHHHHHHHHHH
Q psy17173 521 AFEIAPRDQ-------PSIIIVTKSPEDKKSWFSDLIM 551 (1108)
Q Consensus 521 aF~I~~~~~-------~~~~l~a~s~eeK~~Wm~~L~~ 551 (1108)
.|+|.+.++ .+|.|.|.|.+|+.+|+++|..
T Consensus 77 ~F~l~~~d~r~v~~~h~~y~LsA~t~ee~~~Wi~s~~r 114 (125)
T 1dyn_A 77 IFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLR 114 (125)
T ss_dssp EEEEEETTSSCSSTTCSSEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEECCCCccccccceEEEEeCCCHHHHHHHHHHHHh
Confidence 999996553 3899999999999999998843
No 80
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Probab=97.85 E-value=0.00012 Score=71.07 Aligned_cols=108 Identities=11% Similarity=0.103 Sum_probs=75.2
Q ss_pred ceeeeeeeEEE---eCCC---CcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCc
Q psy17173 443 EFYREDTLMKY---DGKS---NRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTD 516 (1108)
Q Consensus 443 ~li~eG~L~k~---~~~~---~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~ 516 (1108)
..+++|-|.+. .+++ +.++.|++.|=++.|.+.|..+.... ..........-.+.|+|+++.|....|..
T Consensus 11 ~~~k~G~L~kk~~~~~G~~~~k~Wk~rwfvL~~~~L~yykd~~~~~~----~~~~~~~~~~p~g~I~L~~~~v~~~~~~~ 86 (129)
T 2p0d_A 11 EVEKSGLLNMTKIAQGGRKLRKNWGPSWVVLTGNSLVFYREPPPTAP----SSGWGPAGSRPESSVDLRGAALAHGRHLS 86 (129)
T ss_dssp SEEEEEEEEEEEEEETTEECCCCCEEEEEEEESSEEEEESCC------------------CCSEEEECTTCEEEECTTSC
T ss_pred ceeEEEEEEEeeeccCCCcCCCCceEEEEEEeCCEEEEEcCcccccc----cccccccCCCCccEEEeCCcEEEECCCCC
Confidence 67899999864 1221 45679999999999999987642110 00000012334567889988887655555
Q ss_pred cccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHHh
Q psy17173 517 DIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVNT 554 (1108)
Q Consensus 517 ~~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~~ 554 (1108)
.-+|.|+|...++..|.|+|.|++|.++|+.+|..+..
T Consensus 87 kr~~~F~l~t~~~~~yl~qA~s~~e~~~Wi~aI~~~i~ 124 (129)
T 2p0d_A 87 SRRNVLHIRTIPGHEFLLQSDHETELRAWHRALRTVIE 124 (129)
T ss_dssp SSSSEEEEECTTSCEEEEECSCHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence 56799999988778899999999999999999987654
No 81
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A
Probab=97.83 E-value=7.6e-05 Score=71.97 Aligned_cols=105 Identities=14% Similarity=0.254 Sum_probs=75.8
Q ss_pred ceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCC-cccccc
Q psy17173 443 EFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENT-DDIKNA 521 (1108)
Q Consensus 443 ~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~-~~~~~a 521 (1108)
..+++|-|.+.+...+.++.|+|.|-++.|.+.+....... ......-..++.|+|.++.|....+. ..-+++
T Consensus 11 ~~~k~G~L~K~g~~~k~Wk~RwfVL~~~~L~yyk~~~~~~~------e~~plg~~~~G~I~L~~~~v~~~~~~~~~k~~~ 84 (124)
T 2w2x_D 11 EHKQQGELYMWDSIDQKWTRHFCAIADAKLSFSDDIEQTME------EDNPLGSLCRGILDLNTYNVVKAPQGKNQKSFV 84 (124)
T ss_dssp --CCEEEEEEEETTTTEEEEEEEEEETTEEEEEEEHHHHHH------CSSCCCCSCSEEEEGGGEEEEECTTCBTTBSEE
T ss_pred hcceeEEEEEECCCCCCceEeEEEEECCEEEEEcccccccc------cccccCCccccEEECCCCEEEEccCCcCCCCEE
Confidence 67889999998877777789999999999988886421100 00000112357889999998776643 345789
Q ss_pred EEeecCC--CCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17173 522 FEIAPRD--QPSIIIVTKSPEDKKSWFSDLIMVN 553 (1108)
Q Consensus 522 F~I~~~~--~~~~~l~a~s~eeK~~Wm~~L~~l~ 553 (1108)
|+|...+ ...|.|.|.|.+|+++||.+|..+.
T Consensus 85 F~I~~~~~~~~~~~~~A~s~ee~~~Wi~ai~~a~ 118 (124)
T 2w2x_D 85 FILEPKQQGDPPVEFATDKVEELFEWFQSIREIT 118 (124)
T ss_dssp EEEEECC--CCCEEEEECCCHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCceEEEEECCHHHHHHHHHHHHHHH
Confidence 9998754 3579999999999999999998753
No 82
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Probab=97.82 E-value=3.7e-05 Score=73.90 Aligned_cols=100 Identities=15% Similarity=0.146 Sum_probs=68.7
Q ss_pred cceeeeeeeEEEeCCCCcceeEEEEeec-CeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecC---CCcc
Q psy17173 442 EEFYREDTLMKYDGKSNRLTERKVYFFD-GVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYE---NTDD 517 (1108)
Q Consensus 442 r~li~eG~L~k~~~~~~~~~er~~FLF~-d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~---d~~~ 517 (1108)
...+++|-|.|.+...+.++.|++.|-+ ..|.+.+...... .++.++|..+.+.... ....
T Consensus 6 ~~~~~~G~L~K~g~~~k~WkkRwfvL~~~~~L~yy~~~~~~~---------------~~g~i~L~~~~~~~~~~~~~~~~ 70 (125)
T 1unq_A 6 VAIVKEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDV---------------DQREAPLNNFSVAQCQLMKTERP 70 (125)
T ss_dssp GCEEEEEEEEEECSSSCCEEEEEEEEETTSEEEEESSCCCSH---------------HHHTSCSEEEECTTCEEEEECSS
T ss_pred CCeeEEeeEEeccCCccCccCcEEEEecCCEEEEEeCCCCCC---------------CCceeEccceeEEeeeecccccC
Confidence 4678999999988766677899999995 4888887654321 1122344444332210 1123
Q ss_pred ccccEEeec---CCCCeEEEEeCCHHHHHHHHHHHHHHHhhH
Q psy17173 518 IKNAFEIAP---RDQPSIIIVTKSPEDKKSWFSDLIMVNTKS 556 (1108)
Q Consensus 518 ~~~aF~I~~---~~~~~~~l~a~s~eeK~~Wm~~L~~l~~~s 556 (1108)
-.+.|+|.. .....|.|+|.|.+|++.||.+|..+....
T Consensus 71 ~~~~F~I~~~~~~~~~~~~~~a~s~~e~~~Wi~al~~~~~~~ 112 (125)
T 1unq_A 71 RPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVADGL 112 (125)
T ss_dssp STTEEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEecCCCCceeEEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 468999985 334589999999999999999998875543
No 83
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}
Probab=97.80 E-value=0.00025 Score=68.54 Aligned_cols=113 Identities=10% Similarity=0.038 Sum_probs=66.7
Q ss_pred ceeeeeeeEEEeC--CCCcceeEEEEeecCeEEEEecCCCCc-cccccccccCcceeEE---EEEeeccCeEEeec----
Q psy17173 443 EFYREDTLMKYDG--KSNRLTERKVYFFDGVLILCKSNKKIS-VTVPINVVSSQYEFKC---KEMYFLRKVEINDY---- 512 (1108)
Q Consensus 443 ~li~eG~L~k~~~--~~~~~~er~~FLF~d~Ll~~k~~~~~~-~~~~~~~~~~~~~y~~---k~~i~l~~~~I~d~---- 512 (1108)
..+++|-|.|.++ ..+.++.|+|.|-++-+++.+...... .... ........... .+.+++....+...
T Consensus 3 ~~~k~G~L~K~~g~~~~k~WkkRwFvL~~~~~l~Y~~~~~d~~~~~~-~~~i~l~~~~~~~~~~~i~l~~~~~~~~~~~~ 81 (128)
T 2rlo_A 3 IPIKQSFLLKRSGNSLNKEWKKKYVTLSSNGFLLYHPSINDYIHSTH-GKEMDLLRTTVKVPGKRPPRAISAFGPSASGS 81 (128)
T ss_dssp CEEEEEEEEEECSCSTTCCEEEEEEEEETTTEEEEESSHHHHHHTCS-CEEEESSSCEEECSSCCCCCSSCCCSCCSCCC
T ss_pred cceeEEEEEEecCCCccCCccEEEEEEeCCCEEEEecchhhhccccC-CCeeeeeeeEEecCCCcccccccccccccccc
Confidence 4689999999854 235678999999976555555431100 0000 00000000011 11234444433211
Q ss_pred -CCCccccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHHhhH
Q psy17173 513 -ENTDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVNTKS 556 (1108)
Q Consensus 513 -~d~~~~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~~~s 556 (1108)
...++..+.|.|...++.+|.|+|.|++|+++||++|..+...+
T Consensus 82 ~~~~~~~~~~F~I~t~~~r~~~l~A~s~~e~~~Wi~ai~~~i~~~ 126 (128)
T 2rlo_A 82 AGQAEEENFEFLIVSSTGQTWHFEAASFEERDAWVQAIESQILAS 126 (128)
T ss_dssp CSSCCCCCCCEEEECTTSCEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence 11124578999998766899999999999999999998776554
No 84
>4gou_A EHRGS-rhogef; RGS domain, DH domain, PH domain, RHO guanine nucleotide EXC factor, signaling protein, GTPase accelerating protein; 2.30A {Entamoeba histolytica}
Probab=97.80 E-value=0.0069 Score=63.14 Aligned_cols=174 Identities=18% Similarity=0.271 Sum_probs=119.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHhHhhhccCHHHHHHHHHHHHHHHHHhhccCCCCCcchhH
Q psy17173 209 HYEQVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCLLGAVEDISEMSSDDHCIGSC 288 (1108)
Q Consensus 209 sy~evi~ELi~TEr~Yv~~L~~ii~~f~~pl~~~~~l~~~~~i~~IFsNIeeI~~~~~~fL~~Le~~~~~~~~~~~IG~~ 288 (1108)
+-...|..|++.|.+||.-|..+ ..|-+-+.+...+ .++.+..+|..|..+...|++|...|.++-.. ..+|.-
T Consensus 187 sikslvesliqdecnyvgvltsl-sefseimtkkqil-gpdvlkelfdhipvliqhhqkfisslqeakad----ekvgek 260 (518)
T 4gou_A 187 SIKSLVESLIQDECNYVGVLTSL-SEFSEIMTKKQIL-GPDVLKELFDHIPVLIQHHQKFISSLQEAKAD----EKVGEK 260 (518)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTTCS-CHHHHHHHHTTHHHHHHHHHHHHHHHTSTTGG----GSHHHH
T ss_pred HHHHHHHHHHHhhccceeehhhH-HHHHHHHHhhhcc-ChHHHHHHHhhchHHHHHHHHHHHHHHHhhhh----HHHHHh
Confidence 45667899999999999999877 5566666655444 45899999999999999999999999765332 357765
Q ss_pred HHhhhhcccc-hhHHHHHhhhccHHHHHHHHHHh-cCh----------hhHHHHHHhcccccccccccccccccccccch
Q psy17173 289 FEEFAEDAEF-DVYEKLLHNIVNQKSIEVLSMHV-TQP----------SILNTLQFAGYGFKECVKYYLPNLLMSPLYHC 356 (1108)
Q Consensus 289 F~~~a~~~~f-~~Y~~Yc~N~~~~~a~~~l~~l~-~~~----------~~~~~~~~~~~~~~~~~~~~L~slLi~PvQRI 356 (1108)
.-. ...| -+|.-|.... |+-...+...- .+. .+.+.+.. ..+-..++..-..|+.|--|+
T Consensus 261 lns---glhflvlyryylrhv--pkniaklcsigmtdeievgrelyplpvieefdk---qqkmtkkmsvlqmlvypyfrv 332 (518)
T 4gou_A 261 LNS---GLHFLVLYRYYLRHV--PKNIAKLCSIGMTDEIEVGRELYPLPVIEEFDK---QQKMTKKMSVLQMLVYPYFRV 332 (518)
T ss_dssp HHH---HTGGGGGGHHHHTTT--THHHHHHHHHHTSCGGGTTTTTCSHHHHHHHHH---HHHHHTSCCHHHHHHGGGGHH
T ss_pred hcc---CceehHHHHHHHHhc--cHHHHHHccCCCcchhhccccccCcchHHHHHH---HHHHHHHHHHHHHHhhhhhee
Confidence 532 3334 3576676654 44333333221 110 11111111 112223455567899999999
Q ss_pred HhHHHHHHHHHhcCCCCc-hHHHHHHHHHHHHHHHHHHhhh
Q psy17173 357 NLYFEYIKIFHSLTDSSK-DKECLEQAQGLLAPLQISLSKI 396 (1108)
Q Consensus 357 ~rY~LLLkeLlK~Tp~~h-D~~~L~~A~~~~~~v~~~ine~ 396 (1108)
..|.....+.+|-|..+. +-..|+.....+--....||.-
T Consensus 333 rtyqayvddfikitkkdsqevkelevvhsqlaifqelinty 373 (518)
T 4gou_A 333 RTYQAYVDDFIKITKKDSQEVKELEVVHSQLAIFQELINTY 373 (518)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999988 8888887777766666667653
No 85
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.73 E-value=0.00028 Score=66.65 Aligned_cols=94 Identities=14% Similarity=0.201 Sum_probs=67.8
Q ss_pred cceeeeeeeEEEeCCC-CcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCccccc
Q psy17173 442 EEFYREDTLMKYDGKS-NRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKN 520 (1108)
Q Consensus 442 r~li~eG~L~k~~~~~-~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~~ 520 (1108)
...+++|-|.|.+.+. +.++.|++.|-++.|.+.+...... .+.+.+....|...+ +-++
T Consensus 8 ~~~~~~G~L~K~~~~~~k~WkkR~fvL~~~~L~yyk~~~~~~----------------~~~i~l~~~~v~~~~---~~~~ 68 (114)
T 2da0_A 8 YGSEKKGYLLKKSDGIRKVWQRRKCSVKNGILTISHATSNRQ----------------PAKLNLLTCQVKPNA---EDKK 68 (114)
T ss_dssp CCSCEEEEEEEECSSSCCCEEEEEEEEETTEEEECCSSCCSC----------------CEEEETTTSEEEECS---SSSS
T ss_pred CCccEEEEEEEeCCCCCCCceeEEEEEeCCEEEEEcCCCCCC----------------CCEEEeeeeEEEECC---CCCC
Confidence 3568899999988755 6678999999999999987643311 122333444444222 2358
Q ss_pred cEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHHhh
Q psy17173 521 AFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVNTK 555 (1108)
Q Consensus 521 aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~~~ 555 (1108)
.|+|... +..|.|+|.|++|++.||++|..+..+
T Consensus 69 ~F~I~~~-~r~~~l~a~s~~e~~~Wi~al~~~~~~ 102 (114)
T 2da0_A 69 SFDLISH-NRTYHFQAEDEQDYVAWISVLTNSKEE 102 (114)
T ss_dssp CEEEEET-TEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcC-CcEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 9999964 668999999999999999999765543
No 86
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A
Probab=97.71 E-value=9.7e-05 Score=68.50 Aligned_cols=97 Identities=12% Similarity=0.127 Sum_probs=64.8
Q ss_pred eeeeeEEEe--------CCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCcc
Q psy17173 446 REDTLMKYD--------GKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDD 517 (1108)
Q Consensus 446 ~eG~L~k~~--------~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~ 517 (1108)
++|-|.+.+ ...+.++.|++.|=++.|.+.+..+.... + ..+.-...+.+....+.-..+...
T Consensus 1 ~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~~~~L~yyk~~~~~~~-----~----~~~~~~~~i~l~~~~~~~~~~~~~ 71 (106)
T 1btn_A 1 MEGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAAS-----G----IPYHSEVPVSLKEAICEVALDYKK 71 (106)
T ss_dssp CEEEEEEEEEECSTTCBCSCCCCEEEEEEEETTEEEEESSHHHHHH-----T----CCSSSCCCEECTTCEEEECSSCCS
T ss_pred CccEEEEEEEEeCCCccCCCCChhEEEEEEECCEEEEEeCCccccc-----C----CCCCCcceEECCCCEEEEcccccC
Confidence 367777665 34445689999999999999875432100 0 001111234555554433334445
Q ss_pred ccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHH
Q psy17173 518 IKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIM 551 (1108)
Q Consensus 518 ~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~ 551 (1108)
-+|.|+|...++..|.|+|.|++|.++||.+|..
T Consensus 72 ~~~~F~i~~~~~~~~~~~A~s~~e~~~Wi~ai~~ 105 (106)
T 1btn_A 72 KKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAISS 105 (106)
T ss_dssp SSSEEEEECTTSCEEEEECSSHHHHHHHHHHHHH
T ss_pred CccEEEEEecCCCEEEEECCCHHHHHHHHHHHhc
Confidence 5789999977778999999999999999999964
No 87
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.70 E-value=0.00029 Score=67.11 Aligned_cols=93 Identities=15% Similarity=0.168 Sum_probs=71.0
Q ss_pred ceeeeeeeEEEeC--CCCcceeEEEEeecC--eEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCccc
Q psy17173 443 EFYREDTLMKYDG--KSNRLTERKVYFFDG--VLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDI 518 (1108)
Q Consensus 443 ~li~eG~L~k~~~--~~~~~~er~~FLF~d--~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~ 518 (1108)
..+++|-|.|.++ ..+.++.|++.|-++ .|.+.+..... ..++.|+|.++.+.... +.-
T Consensus 7 ~~~~~G~L~K~g~~~~~k~WkkRwfvL~~~~~~L~Yy~~~~~~---------------~~~g~I~L~~~~~~~~~--~~~ 69 (119)
T 2dhk_A 7 GKKLCGYLSKFGGKGPIRGWKSRWFFYDERKCQLYYSRTAQDA---------------NPLDSIDLSSAVFDCKA--DAE 69 (119)
T ss_dssp CCCCEEEEEECSCSSSSCCCEEEEEEEETTTTEEEEESSTTCC---------------SCSEEEEGGGCEEEECT--TGG
T ss_pred CCcEEEEEEecCCCCCCCCceeEEEEEECCccEEEEECCCCCc---------------ccccEEECCCCEEEecC--CCC
Confidence 5578899998875 334568999999988 88888755431 23567888888876532 234
Q ss_pred cccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17173 519 KNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVN 553 (1108)
Q Consensus 519 ~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~ 553 (1108)
.+.|.|... +..|.|+|.|++++++||++|..+.
T Consensus 70 ~~~F~i~~~-~r~~~l~a~s~~e~~~Wi~al~~~~ 103 (119)
T 2dhk_A 70 EGIFEIKTP-SRVITLKAATKQAMLYWLQQLQMKR 103 (119)
T ss_dssp GCEEEEECS-SCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeC-CcEEEEECCCHHHHHHHHHHHHHHH
Confidence 689999876 6689999999999999999998765
No 88
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=97.66 E-value=0.00011 Score=70.30 Aligned_cols=103 Identities=14% Similarity=0.097 Sum_probs=70.9
Q ss_pred ceeeeeeeEEEeC--------CCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCC
Q psy17173 443 EFYREDTLMKYDG--------KSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYEN 514 (1108)
Q Consensus 443 ~li~eG~L~k~~~--------~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d 514 (1108)
..+++|-|.+... ..+.++.|++.|=++.|.+.|..+.... + ..++-...+.+....+....+
T Consensus 7 ~v~~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~~~~L~yyk~~~~~~~-----~----~~~~~~~~i~l~~~~~~~~~~ 77 (123)
T 1wjm_A 7 GEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASA-----G----VPYHGEVPVSLARAQGSVAFD 77 (123)
T ss_dssp CCCEEEEEEEEEEEEETTEECSCCCCEEEEEEEETTEEEEESSHHHHTT-----T----CBSSSCCCEECTTCEEEECTT
T ss_pred CeEEEEEEEEEEEEeCCCccCCCCCccEEEEEEECCEEEEEEccccccc-----C----cccCCCceEEccCcEEeeccc
Confidence 5678888876543 1445689999999999999886533110 0 001111235566555544445
Q ss_pred CccccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHHh
Q psy17173 515 TDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVNT 554 (1108)
Q Consensus 515 ~~~~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~~ 554 (1108)
...-+|.|+|...++..|.|.|.|++|.++||++|..+..
T Consensus 78 ~~~r~~~F~i~~~~~~~~~f~A~s~~e~~~Wi~ai~~~~~ 117 (123)
T 1wjm_A 78 YRKRKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAIA 117 (123)
T ss_dssp CSSCSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEEEcCCcEEEEECCCHHHHHHHHHHHHHHHh
Confidence 4556899999987778999999999999999999976543
No 89
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A
Probab=97.62 E-value=0.00039 Score=73.42 Aligned_cols=98 Identities=16% Similarity=0.203 Sum_probs=76.5
Q ss_pred cceeeeeeeEEEeCC----CCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCC---
Q psy17173 442 EEFYREDTLMKYDGK----SNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYEN--- 514 (1108)
Q Consensus 442 r~li~eG~L~k~~~~----~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d--- 514 (1108)
...+++|-|.|.+++ .+.++.|++.|-++.|.+.+..... ..++.|+|.++.+....+
T Consensus 104 ~~v~k~G~L~Kkg~~~~~~~k~WkkRwfVL~~~~L~Yyk~~~~~---------------~p~g~I~L~~~~~v~~~~~~~ 168 (211)
T 1u5e_A 104 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDK---------------QQKGEFAIDGYDVRMNNTLRK 168 (211)
T ss_dssp SSEEEEEEEEEEEHHHHTTTCCCEEEEEEEETTEEEEESSTTCS---------------SCSEEEECTTCEEEECGGGCS
T ss_pred CCccEEEEEEEECCCCCcCCCCcEeEEEEEECCEEEEEcCCCCc---------------cceEEEEeCCcEEEEcCCccc
Confidence 468999999988763 3456899999999999998865532 235678888888876532
Q ss_pred CccccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHHh
Q psy17173 515 TDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVNT 554 (1108)
Q Consensus 515 ~~~~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~~ 554 (1108)
...-.++|.|...++..|.|+|.|.++++.||.+|..+..
T Consensus 169 ~~~k~~~F~I~t~~~r~~~l~A~s~~e~~~Wi~aL~~ai~ 208 (211)
T 1u5e_A 169 DGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFILQ 208 (211)
T ss_dssp STTGGGEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 1223589999987678999999999999999999987643
No 90
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=97.61 E-value=6.1e-05 Score=70.54 Aligned_cols=77 Identities=17% Similarity=0.368 Sum_probs=67.9
Q ss_pred hhhHHHHHHHHHHhcCCCCcCchHHHHHHHHHHHHHHHhcc---------CCCCCChhhHHHHHHhhCCCCCchhhHHHH
Q psy17173 30 GTLVSSLHSILKQVHNSLDINTDALYYTEKLILKLLNLLCS---------KPLPLTTSDMEGKIKKYFPNPISEWTFNEA 100 (1108)
Q Consensus 30 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 100 (1108)
.-|-..|+|||+||||+.+|..+|...+++++-.++++++. +-.--|..|+..+|..++|..|.++|+.++
T Consensus 33 esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpGELaKhAvseG 112 (123)
T 2nqb_D 33 ESYAIYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEG 112 (123)
T ss_dssp CCSHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 46778899999999999999999999999999999888854 233457788999999999999999999999
Q ss_pred HHHHHc
Q psy17173 101 KQALEK 106 (1108)
Q Consensus 101 ~~~~~~ 106 (1108)
..|+.+
T Consensus 113 tkAV~k 118 (123)
T 2nqb_D 113 TKAVTK 118 (123)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999875
No 91
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=97.60 E-value=6.3e-05 Score=70.77 Aligned_cols=77 Identities=17% Similarity=0.341 Sum_probs=68.5
Q ss_pred hhhHHHHHHHHHHhcCCCCcCchHHHHHHHHHHHHHHHhcc---------CCCCCChhhHHHHHHhhCCCCCchhhHHHH
Q psy17173 30 GTLVSSLHSILKQVHNSLDINTDALYYTEKLILKLLNLLCS---------KPLPLTTSDMEGKIKKYFPNPISEWTFNEA 100 (1108)
Q Consensus 30 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 100 (1108)
.-|-..|+|||+||||+.+|...|...+++.+-.++++|+. +-.--|..|+..+|..++|..|.++|++++
T Consensus 36 esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpGELaKhAvseG 115 (126)
T 1tzy_B 36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEG 115 (126)
T ss_dssp CCCHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 46778999999999999999999999999999999988864 234557788999999999999999999999
Q ss_pred HHHHHc
Q psy17173 101 KQALEK 106 (1108)
Q Consensus 101 ~~~~~~ 106 (1108)
..|+.+
T Consensus 116 tkAV~k 121 (126)
T 1tzy_B 116 TKAVTK 121 (126)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999875
No 92
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}
Probab=97.56 E-value=0.00062 Score=65.48 Aligned_cols=97 Identities=10% Similarity=0.058 Sum_probs=70.0
Q ss_pred eeeeeEEE---eCCC----CcceeEEEEeecCeEEEEecCCCCccccccccccCccee--EEEEEeeccCeEEeecCCCc
Q psy17173 446 REDTLMKY---DGKS----NRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEF--KCKEMYFLRKVEINDYENTD 516 (1108)
Q Consensus 446 ~eG~L~k~---~~~~----~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y--~~k~~i~l~~~~I~d~~d~~ 516 (1108)
++|.|.+. +.|+ +.++.+++.|-++.|.+.+.++... .....| .-.+.++|.+..|. ..|..
T Consensus 3 ~~G~L~rk~llK~G~k~~~ksWkr~W~vL~g~~L~yf~~~~~~~--------~~~~~~~~~P~~~i~L~g~~V~-~~e~~ 73 (126)
T 2dtc_A 3 MEGPLRRKTLLKEGRKPALSSWTRYWVVLSGATLLYYGAKSLRG--------TDRKHYKSTPGKKVSIVGWMVQ-LPDDP 73 (126)
T ss_dssp EEEEEEEEEEEBTTBCCSSCCCEEEEEEEETTEEEEEEBSSSCC--------SSGGGBCSSCSEEEECTTCEEE-CCCCT
T ss_pred eeeeeeeeehhhcCCcccccCcccEEEEEeCCEEEEEccccccc--------ccccccccCCCceEEeCCCEEE-ecCCC
Confidence 46666632 2222 2357999999999999999774221 111223 22457899999997 44444
Q ss_pred cccccEEeecC-CCCeEEEEeCCHHHHHHHHHHHHH
Q psy17173 517 DIKNAFEIAPR-DQPSIIIVTKSPEDKKSWFSDLIM 551 (1108)
Q Consensus 517 ~~~~aF~I~~~-~~~~~~l~a~s~eeK~~Wm~~L~~ 551 (1108)
.-+|+|+|... .+..|.|.|.|+++...|+++|..
T Consensus 74 ~~~~~F~L~~~~~G~~Y~fqA~s~~~~~~W~~ai~~ 109 (126)
T 2dtc_A 74 EHPDIFQLNNPDKGNVYKFQTGSRFHAILWHKHLDD 109 (126)
T ss_dssp TSTTEEEEECTTSCSEEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeeCCCCCEEEEeCCCHHHHHHHHHHHHH
Confidence 56899999965 578999999999999999999965
No 93
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=97.51 E-value=0.00071 Score=77.01 Aligned_cols=104 Identities=20% Similarity=0.286 Sum_probs=80.5
Q ss_pred ceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCccccccE
Q psy17173 443 EFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNAF 522 (1108)
Q Consensus 443 ~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~~aF 522 (1108)
..+++|-|.|.++..+.|+.|++.|-++.|.+.+..... ..++.|+|.++.|....+. .-.+.|
T Consensus 212 ~~~k~G~L~K~g~~~k~WkkRwFVL~~~~L~Yyk~~~~~---------------~p~G~I~L~~~~v~~~~~~-~~~~~F 275 (347)
T 2r09_A 212 NPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDK---------------EPRGIIPLENLSIREVEDP-RKPNCF 275 (347)
T ss_dssp CCCEEEEEEEECSSSCCEEEEEEEEETTEEEEESSTTCS---------------SCSEEEECTTCEEEEECCS-SCSSEE
T ss_pred ccccCCeeEecCCCcccceeEEEEEcCCEEEEEcCCCcc---------------CCcEEEEcCCeEEEEccCC-CCCCEE
Confidence 458999999988776778999999999999988865432 1246788888888766543 457899
Q ss_pred EeecCC---------------------CCeEEEEeCCHHHHHHHHHHHHHHHhhHHHHHhh
Q psy17173 523 EIAPRD---------------------QPSIIIVTKSPEDKKSWFSDLIMVNTKSMLERTL 562 (1108)
Q Consensus 523 ~I~~~~---------------------~~~~~l~a~s~eeK~~Wm~~L~~l~~~s~l~~~l 562 (1108)
+|...+ ..+|.|.|.|++|+++||++|..+..+.....++
T Consensus 276 ~I~~~~~~~~~~~~~k~~~~g~~v~~~~r~y~l~A~s~ee~~~Wi~aI~~ai~~~~~~~~l 336 (347)
T 2r09_A 276 ELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISRDPFYDML 336 (347)
T ss_dssp EEECSSSTTCCCCCEEECTTSCEEECCCSCEEEECSSHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred EEEeCCccccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 998542 3579999999999999999999987666554443
No 94
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=97.51 E-value=9.5e-05 Score=63.73 Aligned_cols=65 Identities=17% Similarity=0.290 Sum_probs=61.0
Q ss_pred ccchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhc
Q psy17173 114 VISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMYA 179 (1108)
Q Consensus 114 ~fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~~ 179 (1108)
.+|.+.|+|++|++ -..|++..+...++.++|+.+.+|++-|..++++-+++.|+++|+.+|+++
T Consensus 6 ~lp~a~v~Rl~r~~-g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~~ 70 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIKS 70 (70)
T ss_dssp CSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHTC
T ss_pred cCChHHHHHHHHHc-CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHC
Confidence 58999999999876 468999999999999999999999999999999999999999999999864
No 95
>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP: b.55.1.1
Probab=97.50 E-value=0.00088 Score=65.88 Aligned_cols=109 Identities=10% Similarity=0.042 Sum_probs=77.8
Q ss_pred eeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccc-----cc-----------------cc--cccCccee----
Q psy17173 445 YREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVT-----VP-----------------IN--VVSSQYEF---- 496 (1108)
Q Consensus 445 i~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~-----~~-----------------~~--~~~~~~~y---- 496 (1108)
+++|.|.+...-.+.++.|++.||++-|.|++..+....+ .+ .. .+.....-
T Consensus 2 ~k~G~L~~~~~~~~~w~~~~fvL~~~~L~y~~e~s~~~~~~~~e~~~~~~~~~~~~~~~n~~fh~~~~~~~e~~~~~l~E 81 (150)
T 2fjl_A 2 IKNGILYLEDPVNHEWYPHYFVLTSSKIYYSEETSSDQGNEDEEEPKEASGSTELHSSLEVLFQGPNPAILEPEREHLDE 81 (150)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEEETTEEEECCCCSCSSCCSCCCCSCCCCCSCCCCCCSSSGGGSSCSTTSCTTCSSSCT
T ss_pred CcceEEEeecCCCCCceEeEEEEECCEEEEEeeccccccccCcccccccCCchhhcccchhccccCCccccchhHhcccc
Confidence 5789999888877788999999999999998844321000 00 00 00000001
Q ss_pred ------EEEEEeeccCeEEeecCCC-ccccccEEeecCC--CCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17173 497 ------KCKEMYFLRKVEINDYENT-DDIKNAFEIAPRD--QPSIIIVTKSPEDKKSWFSDLIMVN 553 (1108)
Q Consensus 497 ------~~k~~i~l~~~~I~d~~d~-~~~~~aF~I~~~~--~~~~~l~a~s~eeK~~Wm~~L~~l~ 553 (1108)
-.++.|.|.++.|....++ .+-.++|+|...+ ..+|.|.|.|.++...||++|+.+.
T Consensus 82 ~~~lG~l~kG~IdL~gc~V~~~~~~~~~~~~vF~I~~~~~~~~~~~laAds~Eem~dW~kaIreaa 147 (150)
T 2fjl_A 82 NSPLGDLLRGVLDVPACQIAIRPEGKNNRLFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREVA 147 (150)
T ss_dssp TTTTTTCCCEEECSTTCEEEEETTCSSSCSCEEEEECTTTSSCCEEEEESSHHHHHHHHHHHHHHH
T ss_pred cccccccccceEecCccEEEeccCCCCCCceEEEEeCCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Confidence 1268999999999887765 3457999998654 3489999999999999999998764
No 96
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A
Probab=97.49 E-value=0.00035 Score=76.34 Aligned_cols=105 Identities=10% Similarity=0.074 Sum_probs=75.4
Q ss_pred cceeeeeeeEE--------EeCC----CCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEE
Q psy17173 442 EEFYREDTLMK--------YDGK----SNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEI 509 (1108)
Q Consensus 442 r~li~eG~L~k--------~~~~----~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I 509 (1108)
...+++|-|.+ -++. .+.|+.|++.|-++.|.+.|..+.... .....-.+.|+|.+..|
T Consensus 9 ~~v~K~G~L~~k~~~~~~K~g~~~~~~~K~WkrRWfVL~~~~L~yyK~~~~~~~---------~~~~~p~g~I~L~~~~v 79 (263)
T 3a8p_A 9 GVVRKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKGCTLLFYETYGKNST---------EQNSAPRCALFAEDSIV 79 (263)
T ss_dssp -CEEEEEEEEEEEEEEEEGGGEEEECTTCCCEEEEEEEETTEEEEESSCCC---------------CCCSEEEECTTCEE
T ss_pred CCeEEEEEeeecccccccCCCCccCccCCCceEEEEEEcCCEEEEEecCccccc---------ccccCccceEEcCCcEE
Confidence 46788999882 1222 445789999999999999986542110 00123345688888887
Q ss_pred eecCCCccccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHHhh
Q psy17173 510 NDYENTDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVNTK 555 (1108)
Q Consensus 510 ~d~~d~~~~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~~~ 555 (1108)
....+...-+|.|+|...++..|.|+|.|+++.+.||++|..+...
T Consensus 80 ~~~~~~~kk~~~F~I~t~~~r~y~f~A~s~ee~~~Wi~aI~~a~~~ 125 (263)
T 3a8p_A 80 QSVPEHPKKEHVFCLSNSCGDVYLFQATSQTDLENWVTAIHSACAS 125 (263)
T ss_dssp EECTTCSSCSSEEEEECTTSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EECCcCCCCCCEEEEEcCCCcEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 7665554558999999877789999999999999999999876543
No 97
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=97.45 E-value=0.0015 Score=75.54 Aligned_cols=95 Identities=13% Similarity=0.182 Sum_probs=70.2
Q ss_pred ceeeeeeeEEEeCCC---CcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCcccc
Q psy17173 443 EFYREDTLMKYDGKS---NRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIK 519 (1108)
Q Consensus 443 ~li~eG~L~k~~~~~---~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~ 519 (1108)
..+++|-|.+.++++ +.|+.|+++|=++.|.+.+.. ... -.+.+.|..+.|...++ .+-+
T Consensus 277 ~~~k~G~L~K~~~~~~~~~~WkkRwfvL~~~~L~y~k~~-~~~---------------~~~~i~l~~~~v~~~~~-~~r~ 339 (385)
T 2q13_A 277 LTRKAGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQARG-DVA---------------GGLAMDIDNCSVMAVDC-EDRR 339 (385)
T ss_dssp CSCCEEEEEEC--------CCEEEEEEEETTEEEEECSS-CSS---------------CEEEEECTTCEEEEECC-TTCS
T ss_pred CccEEEEEEEecCCCCCcCCceeEEEEEECCEEEEecCC-CcC---------------CCceEEccceEEEeccc-cCCC
Confidence 678999999876652 247899999999999887762 211 12567888887765544 3556
Q ss_pred ccEEeecCCC-CeEEEEeCCHHHHHHHHHHHHHHHh
Q psy17173 520 NAFEIAPRDQ-PSIIIVTKSPEDKKSWFSDLIMVNT 554 (1108)
Q Consensus 520 ~aF~I~~~~~-~~~~l~a~s~eeK~~Wm~~L~~l~~ 554 (1108)
+.|+|...++ .+|.|+|.|+++++.||.+|..+..
T Consensus 340 ~~F~i~t~~~~~~~~l~A~s~~e~~~Wi~ai~~~~~ 375 (385)
T 2q13_A 340 YCFQITSFDGKKSSILQAESKKDHEEWICTINNISK 375 (385)
T ss_dssp SEEEEECTTSCBCCCEECSSHHHHHHHHHHHHHHHT
T ss_pred ceEEEEeCCCCeEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 9999997764 6899999999999999999976533
No 98
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A
Probab=97.45 E-value=0.00056 Score=69.27 Aligned_cols=97 Identities=15% Similarity=0.158 Sum_probs=61.2
Q ss_pred ceeeeeeeEE----------EeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccC--eEEe
Q psy17173 443 EFYREDTLMK----------YDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRK--VEIN 510 (1108)
Q Consensus 443 ~li~eG~L~k----------~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~--~~I~ 510 (1108)
..+++|-|.+ .+...+.++.||+.|-++.|.+.+...... -..++.++|.. +.+.
T Consensus 2 dv~~eG~L~~k~~~~~~gkK~g~~~k~WkkRwfvL~~~~L~yyk~~~~~~-------------~~~~g~i~l~~~~~~~~ 68 (168)
T 2j59_M 2 DAAKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQT-------------TPSEEEQPISVNACLID 68 (168)
T ss_dssp -CCEEEEEEEEECC------------CCEEEEEEEETTEEEEESCTTCC---------------------CEECSSCEEE
T ss_pred CCcEEEEEeeeeecccCCcccCCCCCCceEEEEEEeCCEEEEEECCcccc-------------cccCCceEecccceEEE
Confidence 3567888883 333344568999999999999988654311 11233444443 2222
Q ss_pred ecCCCccccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17173 511 DYENTDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVN 553 (1108)
Q Consensus 511 d~~d~~~~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~ 553 (1108)
-..+...-.|.|+|...+ ..|.|+|.|++|++.||++|..+.
T Consensus 69 ~~~~~~~~~~~F~I~t~~-r~~~l~A~s~~e~~~Wi~ai~~~~ 110 (168)
T 2j59_M 69 ISYSETKRKNVFRLTTSD-CECLFQAEDRDDMLAWIKTIQESS 110 (168)
T ss_dssp ECSSSCSCSSEEEEECSS-CEEEEECSSHHHHHHHHHHHHHHC
T ss_pred eccccCCCCCEEEEEeCC-ceEEEEcCCHHHHHHHHHHHHHHH
Confidence 122333457899999775 689999999999999999998873
No 99
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=97.42 E-value=0.0029 Score=73.63 Aligned_cols=96 Identities=11% Similarity=0.165 Sum_probs=68.6
Q ss_pred ccceeeeeeeEEEeC---CCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCcc
Q psy17173 441 LEEFYREDTLMKYDG---KSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDD 517 (1108)
Q Consensus 441 ~r~li~eG~L~k~~~---~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~ 517 (1108)
.....++|-|.+-+. ..+.|+.|+++|=++.|.+.+....... ..+.|..+.|....+ .+
T Consensus 298 ~~~~~k~G~L~k~~~~g~~~~~W~rrwfvl~~~~l~y~~~~~~~~~----------------~~~~l~~~~v~~~~~-~~ 360 (407)
T 4h8s_A 298 RNLIQKAGYLNLRNKTGLVTTTWERLYFFTQGGNLMCQPRGAVAGG----------------LIQDLDNCSVMAVDC-ED 360 (407)
T ss_dssp CSCSCCEEEEEEEEECSSSCEEEEEEEEEECSSCEECCCTTCSSCC----------------CCBCSSCCEEEEECC-TT
T ss_pred CCcceeeceeeeeccCCCCCCCceEEEEEEECCEEEEEeCCCCCCC----------------eEEECCceEEEECCC-CC
Confidence 345679999987633 2345789999999999888775433211 134566666654433 34
Q ss_pred ccccEEeecCCC-CeEEEEeCCHHHHHHHHHHHHHHH
Q psy17173 518 IKNAFEIAPRDQ-PSIIIVTKSPEDKKSWFSDLIMVN 553 (1108)
Q Consensus 518 ~~~aF~I~~~~~-~~~~l~a~s~eeK~~Wm~~L~~l~ 553 (1108)
-+++|+|...++ .+|+|+|.|+++++.||++|..+.
T Consensus 361 r~~cF~i~~~~~~~~~~l~A~s~~e~~~Wi~ai~~a~ 397 (407)
T 4h8s_A 361 RRYCFQITTPNGKSGIILQAESRKENEEWICAINNIS 397 (407)
T ss_dssp CSSEEEEECTTSSCCEEEECSSSHHHHHHHHHHHHHH
T ss_pred CCceEEEEecCCCceEEEEcCCHHHHHHHHHHHHHHH
Confidence 578999997654 489999999999999999997654
No 100
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=97.41 E-value=0.00032 Score=66.32 Aligned_cols=91 Identities=13% Similarity=0.084 Sum_probs=62.8
Q ss_pred eeeeeeEEEeCCCCcceeEEEEeecC---eEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecC--CCcccc
Q psy17173 445 YREDTLMKYDGKSNRLTERKVYFFDG---VLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYE--NTDDIK 519 (1108)
Q Consensus 445 i~eG~L~k~~~~~~~~~er~~FLF~d---~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~--d~~~~~ 519 (1108)
++.|-|.+.. +.+.++.|.+.|=++ +|.+.|..... +-.+.|+|.++.|.... +..+-+
T Consensus 9 ~~~G~L~k~~-~~~~WkkrWfVL~~~~~~~Ly~Yk~~~d~---------------~p~g~I~L~g~~V~~~~~~~~~~~~ 72 (112)
T 2coc_A 9 LLCGPLRLSE-SGETWSEVWAAIPMSDPQVLHLQGGSQDG---------------RLPRTIPLPSCKLSVPDPEERLDSG 72 (112)
T ss_dssp SSEEEEEEES-SSSCEEEEEEECCTTCTTCEEEECCTTCS---------------SSCSEECGGGCEEECCCSSSCCSSS
T ss_pred eEEEEEEecC-CCCCceEEEEEEECCCccEEEEECCCCcc---------------CcceEEEcCCCEEEecCcccccCCC
Confidence 3458888743 355667788777653 44444433321 12357889999888533 233347
Q ss_pred ccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17173 520 NAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMV 552 (1108)
Q Consensus 520 ~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l 552 (1108)
++|+|... +.+|.|.|.|+++.++||++|..+
T Consensus 73 ~~Fki~~~-~~~y~f~A~s~e~~~~Wl~al~~A 104 (112)
T 2coc_A 73 HVWKLQWA-KQSWYLSASSAELQQQWLETLSTA 104 (112)
T ss_dssp EEEEEEET-TEEEEEEESSHHHHHHHHHHHHHH
T ss_pred CEEEEecC-CeEEEEEcCCHHHHHHHHHHHHHH
Confidence 89999954 568999999999999999999764
No 101
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Probab=97.39 E-value=0.0013 Score=63.23 Aligned_cols=107 Identities=17% Similarity=0.201 Sum_probs=72.2
Q ss_pred ceeeeeeeEEE---eC----CCCcceeEEEEeecCeEEEEecCCCCccccccccccCccee-EEEEEeeccCeEEeecC-
Q psy17173 443 EFYREDTLMKY---DG----KSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEF-KCKEMYFLRKVEINDYE- 513 (1108)
Q Consensus 443 ~li~eG~L~k~---~~----~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y-~~k~~i~l~~~~I~d~~- 513 (1108)
...++|.|.+- .+ +.+.++.+++.|=.+.|.+.|..+.... .+......| .-...+.|.+..|.-..
T Consensus 7 ~v~keG~L~rK~~~~~gkk~~~r~W~~~w~VL~~~~L~~yKd~~~~~~----~~~~~~~~~~~~~~~i~L~~a~v~~~~~ 82 (124)
T 3pp2_A 7 TLDKAGVLHRTKTADKGKRLRKKHWSASWTVLEGGVLTFFKDSKTSAA----GGLRQPSKFSTPEYTVELRGATLSWAPK 82 (124)
T ss_dssp --CEEEEEEEEEEEETTEECSSCCCEEEEEEEETTEEEEESCSBCC-------CBCCGGGGCSEEEEEECTTCEEEECCG
T ss_pred cEEEEEEEEEEEeccCCccCCCCCceEEEEEEECCEEEEEecCccccc----cCccCcccccCCcceEEcCCCEEEeccc
Confidence 56678888743 11 2235679999999999999985443210 000000112 33467888887775543
Q ss_pred CCccccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17173 514 NTDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVN 553 (1108)
Q Consensus 514 d~~~~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~ 553 (1108)
|...-+|.|+|...++..|.|+|.|.++.+.|+.+|..+.
T Consensus 83 d~~krk~vF~l~t~~~~~ylfqA~s~~e~~~Wi~aI~~aI 122 (124)
T 3pp2_A 83 DKSSRKNVLELRSRDGSEYLIQHDSEAIISTWHKAIAQGI 122 (124)
T ss_dssp GGCSSSSEEEEECTTSCEEEEECSCHHHHHHHHHHHHHHH
T ss_pred ccCCCceEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHH
Confidence 5445689999998778899999999999999999998754
No 102
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=97.35 E-value=0.0012 Score=63.71 Aligned_cols=101 Identities=13% Similarity=0.050 Sum_probs=65.3
Q ss_pred ccceeeeeeeEEEe-CCCCcceeEEEEee--cCeEEEEecCCCCccccccccccCcceeEEEEEeeccC-eEEeecC--C
Q psy17173 441 LEEFYREDTLMKYD-GKSNRLTERKVYFF--DGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRK-VEINDYE--N 514 (1108)
Q Consensus 441 ~r~li~eG~L~k~~-~~~~~~~er~~FLF--~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~-~~I~d~~--d 514 (1108)
.+...++|-|.|.+ ...+.++.|++.|= ++.+++......... ..-+.++.|+|.. ..|.... +
T Consensus 12 ~~~~~~~G~L~K~g~~~~k~WkrRwFvL~~~~~~~L~Y~k~~~~~~----------~~~~~~G~I~L~~~~~V~~~~~~~ 81 (126)
T 1v5p_A 12 DRQNRICGFLDIEDNENSGKFLRRYFILDTQANCLLWYMDNPQNLA----------VGAGAVGSLQLTYISKVSIATPKQ 81 (126)
T ss_dssp CCCCCEECCEEEECTTCSSCEEEEEEEEETTTTEEEEESSCTTTSC----------TTCCCSEEEETTTCCEEEECCTTT
T ss_pred cCCCceEEEEEEeCCCCCCCccceEEEEecCCCCEEEEECCCCCCC----------CCceeeEEEECCCccEEecCCccc
Confidence 45677899999987 44556677777764 165665533310000 0123456677776 3444332 2
Q ss_pred CccccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17173 515 TDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMV 552 (1108)
Q Consensus 515 ~~~~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l 552 (1108)
....+++|.|... ..+|.|.|.|+++.+.||++|..+
T Consensus 82 ~~~~~~~F~i~t~-~r~y~l~A~s~~e~~~Wi~al~~a 118 (126)
T 1v5p_A 82 KPKTPFCFVINAL-SQRYFLQANDQKDLKDWVEALNQA 118 (126)
T ss_dssp SCSCSSEEEEECS-SCEEEEECSSHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEEECC-CEEEEEECCCHHHHHHHHHHHHHH
Confidence 3345689977643 568999999999999999999764
No 103
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Probab=97.31 E-value=0.00036 Score=67.66 Aligned_cols=100 Identities=10% Similarity=0.052 Sum_probs=69.1
Q ss_pred ceeeeeeeEEE--eCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEE---eecCC-Cc
Q psy17173 443 EFYREDTLMKY--DGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEI---NDYEN-TD 516 (1108)
Q Consensus 443 ~li~eG~L~k~--~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I---~d~~d-~~ 516 (1108)
..+++|-|.+. ++..+.++.|++.|-++.|.+.+...... .-.-++.|+|.++.+ ...++ ..
T Consensus 4 ~v~~~G~L~K~~~~~~~~~WkrRwfvL~~~~L~yyk~~~d~~------------~~~p~g~I~L~~~~~~~v~~~~~~~~ 71 (134)
T 2y7b_A 4 SVEERGFLTIFEDVSGFGAWHRRWCVLSGNCISYWTYPDDEK------------RKNPIGRINLANCTSRQIEPANREFC 71 (134)
T ss_dssp CCCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEESSHHHHT------------TSCCSEEEEGGGBCSSSCEECCTTTC
T ss_pred CceEEeeEEEEcCCCCCCCcEEEEEEEECCEEEEECCCCccc------------ccCceEEEEhhhCccccccccchhhc
Confidence 56789999987 45445678999999999999988432100 012245788888764 22221 12
Q ss_pred cccccEEeecC--CC-----------------CeEEEEeCCHHHHHHHHHHHHHHHh
Q psy17173 517 DIKNAFEIAPR--DQ-----------------PSIIIVTKSPEDKKSWFSDLIMVNT 554 (1108)
Q Consensus 517 ~~~~aF~I~~~--~~-----------------~~~~l~a~s~eeK~~Wm~~L~~l~~ 554 (1108)
.-+|.|+|... .. ..|.|.|.|++|++.||++|..+..
T Consensus 72 ~~~~~F~i~~~~p~~~~~~~~~~~~~~~~~~~r~~~l~A~s~~e~~~Wi~al~~~i~ 128 (134)
T 2y7b_A 72 ARRNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKLNQVLV 128 (134)
T ss_dssp CCTTEEEEEEEEECCTTCCCCSSEEEETTEEEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEecCCCcccccccccccccCCCceEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 45789999852 11 2699999999999999999987643
No 104
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=97.29 E-value=0.00084 Score=71.77 Aligned_cols=96 Identities=21% Similarity=0.284 Sum_probs=74.9
Q ss_pred cceeeeeeeEEEeCCC-----CcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCc
Q psy17173 442 EEFYREDTLMKYDGKS-----NRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTD 516 (1108)
Q Consensus 442 r~li~eG~L~k~~~~~-----~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~ 516 (1108)
...+++|-|.|.+.+. +.++.|++.|-++.|.+.+..... ..++.|+|.++.+....+
T Consensus 56 ~~~~k~G~L~K~g~~~~~~~~k~WkkRwfvL~~~~L~Yyk~~~~~---------------~~~g~I~L~~~~~v~~~~-- 118 (228)
T 3tfm_A 56 QEALKQGWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDSEE---------------KLKGTVEVRSAKEIIDNT-- 118 (228)
T ss_dssp CCSSEEEEEEECGGGCSSSCGGGCEEEEEEECSSEEEEESSTTCC---------------SEEEEEEGGGCSEEEEET--
T ss_pred CCcceEEEEEEECCCcCCcccCCceEEEEEEeCCEEEEEeCCCCc---------------ceeEEEEcCCCEEeccCC--
Confidence 4678999999887653 566899999999999999865431 346788888877643322
Q ss_pred cccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHHhh
Q psy17173 517 DIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVNTK 555 (1108)
Q Consensus 517 ~~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~~~ 555 (1108)
.-.+.|+|... +..|.|+|.|++|++.||++|..+...
T Consensus 119 ~k~~~F~I~t~-~r~~~l~A~s~~e~~~Wv~aL~~~i~~ 156 (228)
T 3tfm_A 119 NKENGIDIIMA-DRTFHLIAESPEDASQWFSVLSQVHSS 156 (228)
T ss_dssp TTTSEEEEECS-SCEEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred CCCcEEEEEcC-CcEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 34689999775 578999999999999999999887653
No 105
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1
Probab=97.23 E-value=0.00049 Score=65.89 Aligned_cols=104 Identities=12% Similarity=0.141 Sum_probs=70.4
Q ss_pred ceeeeeeeEEEeC--------CCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCC
Q psy17173 443 EFYREDTLMKYDG--------KSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYEN 514 (1108)
Q Consensus 443 ~li~eG~L~k~~~--------~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d 514 (1108)
...++|-|.+... ..+.++.|++.|=++.|.+.|..+.... .+. ..+.-.+.+.|....|.-..|
T Consensus 7 ~v~k~G~L~rK~~~~~~gkk~~~~~Wk~rw~vL~~~~L~~yk~~~~~~~----~~~---~~~~~~~~i~L~~~~v~~~~d 79 (122)
T 1dro_A 7 GEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKS----NPE---LTFRGEPSYDLQNAAIEIASD 79 (122)
T ss_dssp SSSEEEEEEEECSCCCCCCTTCCCCCEEEEEEESSSCCBEESSSSHHHH----CTT---CCSSCCCBCCCSSCCCEECCS
T ss_pred ceEEEEEEEEEEEEeCCCccCCCCCccEEEEEEECCEEEEEeCCccccc----CCC---cccCCCceEECCCCEEEeCCC
Confidence 3457888875422 2345689999999999999886653211 000 011111346666665544444
Q ss_pred CccccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17173 515 TDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVN 553 (1108)
Q Consensus 515 ~~~~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~ 553 (1108)
...-+|.|+|...++..|.|+|.|+++.++||.+|..+.
T Consensus 80 ~~kr~~~F~l~t~~~~~~lfqA~s~~e~~~Wi~ai~~~i 118 (122)
T 1dro_A 80 YTKKKHVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQS 118 (122)
T ss_dssp SSSSTTEEEEECSSSCEEEEECSSSHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEEcCCCEEEEECCCHHHHHHHHHHHHHHH
Confidence 445679999997777899999999999999999997653
No 106
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=97.14 E-value=0.0011 Score=76.53 Aligned_cols=98 Identities=12% Similarity=0.194 Sum_probs=71.7
Q ss_pred cceeeeeeeEEEeCCC-CcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCe----EEeecC--C
Q psy17173 442 EEFYREDTLMKYDGKS-NRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKV----EINDYE--N 514 (1108)
Q Consensus 442 r~li~eG~L~k~~~~~-~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~----~I~d~~--d 514 (1108)
+.++++|-|.|.++.. +.++.|++.|-++.|.+.+...... -++.|+|..+ .|.+.. +
T Consensus 267 ~~~~k~G~L~K~g~~~~k~WKkRwFVL~~~~L~YYk~~~d~~---------------~~G~I~L~~~~~~~~v~~~~~~~ 331 (386)
T 3lju_X 267 RNYLKEGYMEKTGPKQTEGFRKRWFTMDDRRLMYFKDPLDAF---------------ARGEVFIGSKESGYTVLHGFPPS 331 (386)
T ss_dssp CCCSEEEEEEECCTTSCSCCEEEEEEEETTEEEEESSTTCSB---------------CSEEEECCCGGGTCEEEESCCTT
T ss_pred cccceeeeEEEECCCCCCCCcccEEEEECCEEEEEecCCCcc---------------cceEEEeecceeeeeecccCCcc
Confidence 5789999999988766 6678999999999999998754321 2344555332 232222 1
Q ss_pred Ccc--ccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHHhh
Q psy17173 515 TDD--IKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVNTK 555 (1108)
Q Consensus 515 ~~~--~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~~~ 555 (1108)
... .++.|.|... +.+|.|+|.|++|+++||.+|..+..+
T Consensus 332 ~~~~~~~~~F~I~t~-~rty~l~A~s~~e~~~Wi~aL~~~i~~ 373 (386)
T 3lju_X 332 TQGHHWPHGITIVTP-DRKFLFACETESDQREWVAAFQKAVDR 373 (386)
T ss_dssp CCSCCSCEEEEEECS-SCEEEEEESSHHHHHHHHHHHHHHHHS
T ss_pred ccccCCCcEEEEEeC-CeEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 111 2589999976 479999999999999999999887554
No 107
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=97.09 E-value=0.00055 Score=58.57 Aligned_cols=64 Identities=17% Similarity=0.248 Sum_probs=60.2
Q ss_pred ccchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHh
Q psy17173 114 VISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMY 178 (1108)
Q Consensus 114 ~fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~ 178 (1108)
.+|..+|.|++|+. ...|++..|...++-++|+...++.+-|..++...+++.|+|+||++|++
T Consensus 2 ~lP~a~v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~ 65 (68)
T 1b67_A 2 ELPIAPIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARK 65 (68)
T ss_dssp CSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGG
T ss_pred CCCccHHHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 47999999999887 66899999999999999999999999999999999999999999999986
No 108
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*
Probab=96.97 E-value=0.0018 Score=70.73 Aligned_cols=101 Identities=15% Similarity=0.169 Sum_probs=69.6
Q ss_pred ccceeeeeeeEEEeCCCCcceeEEEEeecC-------eEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecC
Q psy17173 441 LEEFYREDTLMKYDGKSNRLTERKVYFFDG-------VLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYE 513 (1108)
Q Consensus 441 ~r~li~eG~L~k~~~~~~~~~er~~FLF~d-------~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~ 513 (1108)
....+++|-|.|. +.++.|++.|-++ .|.+.+..+.... ..-+.++.|.|.++......
T Consensus 7 ~~~v~k~G~L~K~----K~WkkRwFVL~~~~~~G~~~~L~YYk~~~~~~~----------~~~~p~g~I~L~~~~~V~~~ 72 (264)
T 1qqg_A 7 FSDVRKVGYLRKP----KSMHKRFFVLRAASEAGGPARLEYYENEKKWRH----------KSSAPKRSIPLESCFNINKR 72 (264)
T ss_dssp --CEEEEEEEECT----TTCCEEEEEEECCBTTTBSSEEEEESSHHHHHT----------TCSCCSEEEEGGGEEEEEEE
T ss_pred CCCccEEEEEEEC----CCCEeEEEEEECCCCCCCCCEEEEECCCccccc----------cccCcceEEEeeceEEEEec
Confidence 3478899999876 4467899999998 8888875432100 00124567788877633322
Q ss_pred CCccccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHHhhH
Q psy17173 514 NTDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVNTKS 556 (1108)
Q Consensus 514 d~~~~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~~~s 556 (1108)
.....++.|.|... +.+|.|.|.|++|++.||++|..+....
T Consensus 73 ~~~~~~~~F~I~t~-~rty~l~A~se~e~~~Wi~aL~~~~~~~ 114 (264)
T 1qqg_A 73 ADSKNKHLVALYTR-DEHFAIAADSEAEQDSWYQALLQLHNRA 114 (264)
T ss_dssp CCSSCSSEEEEEES-SCEEEEECSSHHHHHHHHHHHHHHC---
T ss_pred cCCCCCcEEEEEEC-CEEEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 22455789999976 6799999999999999999998875444
No 109
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=96.87 E-value=0.0037 Score=68.97 Aligned_cols=102 Identities=10% Similarity=0.049 Sum_probs=70.2
Q ss_pred eeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCC-----cccc
Q psy17173 445 YREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENT-----DDIK 519 (1108)
Q Consensus 445 i~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~-----~~~~ 519 (1108)
.++|-|.+.+++.+.|+.||++|=++.|.+.+....... .... .-..+..+.|....+. .+-.
T Consensus 169 ~~~G~L~k~~~~~k~WkkR~fvL~~~~L~yyk~~~~~~~---------~~~i---~l~~l~~~~v~~~~~~~~~~~~~~~ 236 (291)
T 3tca_A 169 ELEGALYLKEDGKKSWKRRYFLLRASGIYYVPKGKTKTS---------RDLA---CFIQFENVNIYYGIQCKMKYKAPTD 236 (291)
T ss_dssp CCEEEEEEECTTSSCEEEEEEEECSSEEEECCTTCCSST---------TTCE---EEEEGGGCEEEEECSHHHHHCCSSS
T ss_pred ceEEEEEEeCCCCCCceEEEEEEeCCEEEEEecCccccc---------cCce---eeccceeEEEEecCccccccCCCCC
Confidence 368999988888788899999999999988876543221 0011 1123444444433321 2346
Q ss_pred ccEEeecCC-----CCeEEEEeCCHHHHHHHHHHHHHHHhhHHH
Q psy17173 520 NAFEIAPRD-----QPSIIIVTKSPEDKKSWFSDLIMVNTKSML 558 (1108)
Q Consensus 520 ~aF~I~~~~-----~~~~~l~a~s~eeK~~Wm~~L~~l~~~s~l 558 (1108)
|+|.|.+.+ ...+.|+|.|++++..||++|+.+..+..+
T Consensus 237 ~~F~i~~~~~~~~~~~~~~l~A~s~~e~~~Wi~air~Ak~g~~l 280 (291)
T 3tca_A 237 HCFVLKHPQIQKESQYIKYLCCDDARTLSQWVMGIRIAKYGKTL 280 (291)
T ss_dssp CEEEEECTTCCSCCTTSEEEECSSHHHHHHHHHHHHHHHHTHHH
T ss_pred eEEEEEcCCCCCCCceEEEEECCCHHHHHHHHHHHHHHhcchHH
Confidence 899998643 236999999999999999999887655544
No 110
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=96.74 E-value=0.0083 Score=64.84 Aligned_cols=103 Identities=10% Similarity=0.074 Sum_probs=75.8
Q ss_pred eeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCc-----ccc
Q psy17173 445 YREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTD-----DIK 519 (1108)
Q Consensus 445 i~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~-----~~~ 519 (1108)
-.+|.|.+-+.++++++.||++|=++.|.+.++.+.+. .-.+...+.++++.|....+.. .-.
T Consensus 133 ~~~G~L~~ke~~~K~WkkRyfvLr~sgLy~~~k~~sk~------------~r~l~~~~~L~~~~vy~~~~~kKk~kaPt~ 200 (256)
T 3hk0_A 133 EIQGFLHVKELGKKSWKKLYVCLRRSGLYCSTKGTSAA------------PRHLQLLADLEDSNIFSLIAGRKQYNAPTD 200 (256)
T ss_dssp EEEEEEEEECTTSSCEEEEEEEEETTEEEEESSTTCCC------------GGGEEEEECCTTEEEEEESSTHHHHCCSSS
T ss_pred cceeEEEEecCCCCcceEEEEEEeCCEEEEEecCCCCc------------cccceEEEEcCCCEEEEecccccccCCCCC
Confidence 36788888777778889999999999998888665322 1122223467888887665432 225
Q ss_pred ccEEeecCCC-----CeEEEEeCCHHHHHHHHHHHHHHHhhHHHH
Q psy17173 520 NAFEIAPRDQ-----PSIIIVTKSPEDKKSWFSDLIMVNTKSMLE 559 (1108)
Q Consensus 520 ~aF~I~~~~~-----~~~~l~a~s~eeK~~Wm~~L~~l~~~s~l~ 559 (1108)
++|.|.+... ..+.|+|.+++++..||.+|+.++.+..|-
T Consensus 201 ~~F~ik~~k~~~~~~~~~~lcaede~~~~~W~~aIr~ak~g~~l~ 245 (256)
T 3hk0_A 201 HGLCIKPNKVRNETKELRLLCAEDEQTRTSWMTAFRLLKYGMLLY 245 (256)
T ss_dssp EEEEEEETTCSSCCTTCEEEEESSHHHHHHHHHHHHHHHHTHHHH
T ss_pred CEEEEEcccccCCCceEEEEEeCCHHHHHHHHHHHHHHHhhHHHH
Confidence 7899885432 269999999999999999999998887753
No 111
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=96.40 E-value=0.014 Score=63.70 Aligned_cols=101 Identities=10% Similarity=0.059 Sum_probs=69.5
Q ss_pred eeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCC-----Cccccc
Q psy17173 446 REDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYEN-----TDDIKN 520 (1108)
Q Consensus 446 ~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d-----~~~~~~ 520 (1108)
.+|.|.+.+.+.++++.||++|=.+.|.+.++.+.+. .-.+...+.++++.|....+ ...-.+
T Consensus 160 ~~G~L~~k~~~~k~WkkRyfvLr~sgLyy~~K~~sk~------------~r~l~~l~~L~~~~VY~~~~~kkk~kaPt~~ 227 (281)
T 4gmv_A 160 IEGVLWLKDDGKKSWKKRYFLLRASGIYYVPKGKAKV------------SRDLVCFLQLDHVNVYYGQDYRNKYKAPTDY 227 (281)
T ss_dssp CEEEEEEECTTSSCEEEEEEEECSSCEEEC---------------------CCEEEECGGGCEEEEESSHHHHTCCSCSC
T ss_pred cEEEEEEECCCCCCCeEEEEEEeCCEEEEEeCCCCCc------------cccceEEEEcCCcEEEEecccccccCCCCCc
Confidence 5788888877777889999999999998887654321 11122334677777766542 223368
Q ss_pred cEEeecCC-----CCeEEEEeCCHHHHHHHHHHHHHHHhhHHH
Q psy17173 521 AFEIAPRD-----QPSIIIVTKSPEDKKSWFSDLIMVNTKSML 558 (1108)
Q Consensus 521 aF~I~~~~-----~~~~~l~a~s~eeK~~Wm~~L~~l~~~s~l 558 (1108)
+|.|.+.. ...+.|+|.+++++..||.+|+.++.+..|
T Consensus 228 ~F~ik~~~~~~~~~~~~~~caede~~~~~Wv~Air~ak~g~~l 270 (281)
T 4gmv_A 228 CLVLKHPQIQKKSQYIKYLCCDDVRTLHQWVNGIRIAKYGKQL 270 (281)
T ss_dssp EEEEECTTCCSCCTTCEEEECSSHHHHHHHHHHHHHHHHTHHH
T ss_pred EEEEecCccCCCCCceEEEEeCCHHHHHHHHHHHHHHhhCcHH
Confidence 99998532 236999999999999999999988776664
No 112
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=96.31 E-value=0.011 Score=68.10 Aligned_cols=99 Identities=16% Similarity=0.211 Sum_probs=72.1
Q ss_pred ceeeeeeeEEEeCCCCcceeEEEEe--ecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCccccc
Q psy17173 443 EFYREDTLMKYDGKSNRLTERKVYF--FDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKN 520 (1108)
Q Consensus 443 ~li~eG~L~k~~~~~~~~~er~~FL--F~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~~ 520 (1108)
.=+++|-|.|.++..+.++.|++.| =++.|.+.+..... .-++.|.|.++.+...++..+-.+
T Consensus 145 ~~~keG~L~KrG~~~k~WkrRwFVL~~~~~~L~Yy~~~~~~---------------~p~g~I~L~~~~~~~~~~~~~~~~ 209 (386)
T 3lju_X 145 AGYREGFLWKRGRDNGQFLSRKFVLTEREGALKYFNRNDAK---------------EPKAVMKIEHLNATFQPAKIGHPH 209 (386)
T ss_dssp SSEEEEEEEEECSSSCCEEEEEEEEETTTTEEEEEC--------------------CCSEEEEGGGEEEEECHHHHTSTT
T ss_pred ccccccceeeeccccCCceEEEEEEEcCCCEEEEECCCCcc---------------CcccEEEeeccEEEEcccccCCCc
Confidence 3479999999998888888999999 57888887765432 235678888877665433334578
Q ss_pred cEEeec---CCCCeEEEEeCCHHHHHHHHHHHHHHHhhH
Q psy17173 521 AFEIAP---RDQPSIIIVTKSPEDKKSWFSDLIMVNTKS 556 (1108)
Q Consensus 521 aF~I~~---~~~~~~~l~a~s~eeK~~Wm~~L~~l~~~s 556 (1108)
+|.|.. .....|.|+|.|+++..+|+++|..+....
T Consensus 210 ~f~I~~~~~~~~R~y~l~A~s~~e~~~Wi~aIr~a~~~~ 248 (386)
T 3lju_X 210 GLQVTYLKDNSTRNIFIYHEDGKEIVDWFNALRAARFHY 248 (386)
T ss_dssp CEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEecCCCceEEEEEcCCHHHHHHHHHhhhhccccc
Confidence 999872 224579999999999999999998775443
No 113
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=96.06 E-value=0.01 Score=56.31 Aligned_cols=95 Identities=14% Similarity=0.199 Sum_probs=59.7
Q ss_pred eeeeeEE--EeCCCC-cceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEE-eecCC-------
Q psy17173 446 REDTLMK--YDGKSN-RLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEI-NDYEN------- 514 (1108)
Q Consensus 446 ~eG~L~k--~~~~~~-~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I-~d~~d------- 514 (1108)
+||-|.+ -++..+ .++.|++.|=+.-|.+.+....... -...+.|.|+.+.- ....+
T Consensus 3 ~eGwl~~pk~~~~~k~~Wkkr~~vL~~~kL~~y~~~~~~~~------------~~p~~~Idl~~~~~V~~V~~~d~i~~~ 70 (117)
T 2rov_A 3 LEGWLSLPVRNNTKKFGWVKKYVIVSSKKILFYDSEQDKEQ------------SNPYMVLDIDKLFHVRPVTQTDVYRAD 70 (117)
T ss_dssp SEEEEECCCCSSSSCCCCCEEEEEEETTEEEEESCHHHHHT------------TCCSEEECGGGEEEEEECCTTTCSSSC
T ss_pred eEEEEEeecCCCccCCCcEEEEEEEECCEEEEEECCCCccc------------CCceEEEECcccEEEEEcccccccccc
Confidence 4788875 333333 4789999999998888875322100 01112445544332 22221
Q ss_pred CccccccEEeecCC-----CCeEEEEeCCHHHHHHHHHHHHHH
Q psy17173 515 TDDIKNAFEIAPRD-----QPSIIIVTKSPEDKKSWFSDLIMV 552 (1108)
Q Consensus 515 ~~~~~~aF~I~~~~-----~~~~~l~a~s~eeK~~Wm~~L~~l 552 (1108)
..+..+.|+|...+ ..++.|.|.|++|+++|+.+|...
T Consensus 71 ~~~~p~iF~I~~~~~~~~~~~~l~l~A~s~~e~~~WV~aL~~~ 113 (117)
T 2rov_A 71 AKEIPRIFQILYANEGISSAKNLLLLANSTEEQQKWVSRLVKK 113 (117)
T ss_dssp TTTGGGEEEEEECSSSSTTCEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cccCCcEEEEEeCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHH
Confidence 23356789998532 358999999999999999999754
No 114
>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.83 E-value=0.076 Score=50.30 Aligned_cols=98 Identities=8% Similarity=0.110 Sum_probs=63.7
Q ss_pred cceeeeeeeEEEe--CCCCcceeEEEEeecCeE------EEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecC
Q psy17173 442 EEFYREDTLMKYD--GKSNRLTERKVYFFDGVL------ILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYE 513 (1108)
Q Consensus 442 r~li~eG~L~k~~--~~~~~~~er~~FLF~d~L------l~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~ 513 (1108)
...+++|.|.+.. .-+++|+.|++.|+.+-- -+.....+.+ . .=.-++.|.|+++.-....
T Consensus 10 e~~vk~G~L~~q~q~~fgkKWrk~w~vLy~~S~~GvaRLE~yd~~ek~~-------r----~~~~rrVIrLsdCisV~~~ 78 (127)
T 2d9w_A 10 DGAVKQGFLYLQQQQTFGKKWRRFGASLYGGSDCALARLELQEGPEKPR-------R----CEAARKVIRLSDCLRVAEA 78 (127)
T ss_dssp CCSSEEEEEEECBCSSSSCBCCEEEEEEECCSSSSCCEEEEECCCSCSS-------S----CSCCEEEECGGGEEEEEEC
T ss_pred CccccceEEEecccchhhhhhheeEEEEecCCCCCceeeeeeeccCccc-------c----CCCCceEEEhhhCCeEecc
Confidence 4678899999766 334568899999886421 1111110000 0 0112367788876655554
Q ss_pred CCc----cccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17173 514 NTD----DIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMV 552 (1108)
Q Consensus 514 d~~----~~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l 552 (1108)
+.+ ...++|.|... +.+|.|.|.+. |+..||.+|..+
T Consensus 79 ~~e~~~pk~~~aF~l~T~-er~~~laAe~~-E~~~Wi~~ic~~ 119 (127)
T 2d9w_A 79 GGEASSPRDTSAFFLETK-ERLYLLAAPAA-ERGDWVQAICLL 119 (127)
T ss_dssp CSCSSSCSSCEEEEEEES-SCEEEEEECHH-HHHHHHHHHHHH
T ss_pred cCccCCCCcceEEEEEeC-CcEEEEEeCcH-HHHHHHHHHHHH
Confidence 554 45689999988 57999999975 899999999764
No 115
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.32 E-value=0.024 Score=54.68 Aligned_cols=95 Identities=9% Similarity=0.098 Sum_probs=59.0
Q ss_pred eeeEEEeCCCC---cceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCccccccEEe
Q psy17173 448 DTLMKYDGKSN---RLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNAFEI 524 (1108)
Q Consensus 448 G~L~k~~~~~~---~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~~aF~I 524 (1108)
|.|.+...++- .++. +.|.|.|..|++-+++.... + .-.+.|.|++++|....+....+++|++
T Consensus 13 ~~l~~~~pkk~tlK~~Kr-rWFvlk~~~L~YyK~kee~~------~------ePig~I~L~gceV~pd~~~~~~kf~ikl 79 (137)
T 2ys3_A 13 DHLRIFRPRKLTLKGYRQ-HWVVFKETTLSYYKSQDEAP------G------DPIQQLNLKGCEVVPDVNVSGQKFCIKL 79 (137)
T ss_dssp CCCEECCTTSCCSSSSCC-CEEEECSSCEEEESSTTTTT------S------CCSCCBCTTTCEEEECCBGGGTBEEEEE
T ss_pred HHHHhhCcccccccccee-EEEEEeCCEEEEECCchhcc------C------CCceEEECCCCEEeccccccCCceEEEE
Confidence 55555544322 1234 44666666665554443210 0 1123678889988766555666778777
Q ss_pred ecC---CCCeEEEEeCCHHHHHHHHHHHHHHHhh
Q psy17173 525 APR---DQPSIIIVTKSPEDKKSWFSDLIMVNTK 555 (1108)
Q Consensus 525 ~~~---~~~~~~l~a~s~eeK~~Wm~~L~~l~~~ 555 (1108)
... +...|.|.|.|+++.++||++++.+-.+
T Consensus 80 ~iPs~~g~r~y~l~cdsEeqy~~WMaA~rlAskg 113 (137)
T 2ys3_A 80 LVPSPEGMSEIYLRCQDEQQYARWMAGCRLASKG 113 (137)
T ss_dssp EEECSSSEEEEEEEESSHHHHHHHHHHHHHHHTS
T ss_pred EccCCCCceEEEEECCCHHHHHHHHHHHHHhccC
Confidence 632 2357999999999999999999765433
No 116
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=95.30 E-value=0.016 Score=57.29 Aligned_cols=64 Identities=6% Similarity=0.040 Sum_probs=60.8
Q ss_pred ccchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHH
Q psy17173 114 VISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAM 177 (1108)
Q Consensus 114 ~fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~ 177 (1108)
-+|..-|.|++|++.-..||+..|...++.+++....+|..-|.++++..+++.|+++|+.+|+
T Consensus 4 ~LP~a~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~ 67 (154)
T 1f1e_A 4 ELPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALA 67 (154)
T ss_dssp CCCHHHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHH
T ss_pred cCCccHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 4799999999988866699999999999999999999999999999999999999999999998
No 117
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}
Probab=94.86 E-value=0.03 Score=61.12 Aligned_cols=103 Identities=8% Similarity=0.106 Sum_probs=70.4
Q ss_pred ceeeeeeeEEE-----eC-------CCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEe
Q psy17173 443 EFYREDTLMKY-----DG-------KSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEIN 510 (1108)
Q Consensus 443 ~li~eG~L~k~-----~~-------~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~ 510 (1108)
...++|.|.+- +. ..+.|+.+|+.|=++.|.+.|..+.... . ....-.+.|.|.+..+.
T Consensus 10 ~v~k~G~L~rK~~l~~~k~~K~~~~~~r~Wkk~w~VLkg~~L~fYKde~~~~~--------~-~~~~p~~~I~L~ga~v~ 80 (279)
T 3a8n_A 10 TVRKAGALAVKNFLVHKKNKKVESATRRKWKHYWVSLKGCTLFFYETDGRSGI--------D-HNSVPKHAVWVENSIVQ 80 (279)
T ss_dssp CCSCEEEEEEEEEEEEETTTEEECCCCCCCEEEEEEEETTEECCBCCC-----------------CCCSSCCBCCSCEEC
T ss_pred ceeEEEEEEEEEEecccCCcccCCccCCCCeEEEEEEeCCEEEEEeccccccc--------c-cccCCCceEeccCcEEE
Confidence 45678887521 11 2345689999999999999886543211 0 01112235788888877
Q ss_pred ecCCCccccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHHh
Q psy17173 511 DYENTDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVNT 554 (1108)
Q Consensus 511 d~~d~~~~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~~ 554 (1108)
...|...-+|+|+|...++..|.|.|.+.+|.+.|+.+|..+..
T Consensus 81 ~a~d~~kKk~vF~L~t~~g~~yLFQA~s~eEm~~WI~aI~~a~~ 124 (279)
T 3a8n_A 81 AVPEHPKKDFVFCLSNSLGDAFLFQTTSQTELENWITAIHSACA 124 (279)
T ss_dssp CCTTSSSSCSCCCEEETTTEEEECCCSCHHHHHHHHHHHHHHHH
T ss_pred eccccCCCCcEEEEEcCCCCEEEEeCCCHHHHHHHHHHHHHHHh
Confidence 44454456799999988888999999999999999999986543
No 118
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=94.62 E-value=0.063 Score=62.76 Aligned_cols=95 Identities=17% Similarity=0.195 Sum_probs=66.0
Q ss_pred ceeeeeeeEEEeCCCCcceeEEEEee-cCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEee----cCCCcc
Q psy17173 443 EFYREDTLMKYDGKSNRLTERKVYFF-DGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEIND----YENTDD 517 (1108)
Q Consensus 443 ~li~eG~L~k~~~~~~~~~er~~FLF-~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d----~~d~~~ 517 (1108)
..+++|-|.|.++.-+.|+.|++.|- ++.|++.|...... .++.+++..+.+.+ ..+ ..
T Consensus 5 ~v~keG~L~K~g~~~k~Wk~r~fvL~~~~~l~yyk~~~~~~---------------~~~~i~l~~~~~~~~~~~~~~-~~ 68 (446)
T 4ejn_A 5 AIVKEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDV---------------DQREAPLNNFSVAQCQLMKTE-RP 68 (446)
T ss_dssp CEEEEEEEEEEETTTTEEEEEEEEEETTSBEEEESSCC----------------------CCCGGGBCTTCEEEEEC-SS
T ss_pred eEEEEeeEEeeccccccccceEEEEeeCCEEEEEecCCCCC---------------ccCcccccCccccceeecCCC-CC
Confidence 58999999999887777889999997 68888887665421 23345555544322 111 12
Q ss_pred ccccEEeecCCCCeE---EEEeCCHHHHHHHHHHHHHHH
Q psy17173 518 IKNAFEIAPRDQPSI---IIVTKSPEDKKSWFSDLIMVN 553 (1108)
Q Consensus 518 ~~~aF~I~~~~~~~~---~l~a~s~eeK~~Wm~~L~~l~ 553 (1108)
-.|.|.|...+...+ +|.+.+++++..|+.+|....
T Consensus 69 ~~~~f~I~~~~~~~~~~r~~~~~~~ee~e~W~~ai~~~i 107 (446)
T 4ejn_A 69 RPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVA 107 (446)
T ss_dssp STTEEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHC
T ss_pred CCceeEEEcCCCceeeeeEEecCCHHHHHHHHHHHHhhh
Confidence 357999986655544 799999999999999998863
No 119
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=94.60 E-value=0.048 Score=48.46 Aligned_cols=64 Identities=9% Similarity=0.190 Sum_probs=59.6
Q ss_pred cchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhc
Q psy17173 115 ISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMYA 179 (1108)
Q Consensus 115 fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~~ 179 (1108)
+|...|.|+.|++. ..||+..+.--++.++||...+|++-|..+++..+++.|+.+||.+|+..
T Consensus 11 ip~~~I~Riar~~G-v~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~ 74 (84)
T 2hue_C 11 ITKPAIRRLARRGG-VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKR 74 (84)
T ss_dssp SCHHHHHHHHHHTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred CCHHHHHHHHHHcC-chhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHH
Confidence 78999999998774 38999999999999999999999999999999999999999999999874
No 120
>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A*
Probab=94.15 E-value=0.091 Score=52.06 Aligned_cols=84 Identities=14% Similarity=0.126 Sum_probs=57.6
Q ss_pred eEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCccccccEEeecC---CCCeEEEEeCC
Q psy17173 462 ERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNAFEIAPR---DQPSIIIVTKS 538 (1108)
Q Consensus 462 er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~~aF~I~~~---~~~~~~l~a~s 538 (1108)
.||-|.|.|..|.+-+++.... -.-.+.|.|++++|..-.+....++++++... +...+.+.|.|
T Consensus 67 KryWFv~kd~~LsyYKskEe~~------------geP~~~I~LrGCEVtpDVnva~~Kf~IkL~vP~~~gm~e~~Lrcd~ 134 (173)
T 4f7h_A 67 KQYWCTFKDTSISCYKSKEESS------------GTPAHQMNLRGCEVTPDVNISGQKFNIKLLIPVAEGMNEIWLRCDN 134 (173)
T ss_dssp EEEEEEEETTEEEEESCGGGCS------------SCCSEEEECTTCEEEEEEETTTTEEEEEEEEEETTEEEEEEEEESS
T ss_pred eeEEEEEeCCEEEEEcCHhHhc------------CCCceEEecCceEEeccccccccceeEEEeccCCCCcceeeeecCC
Confidence 6788889877777766654321 01145778999999855444455566665522 34479999999
Q ss_pred HHHHHHHHHHHHHHHhhHH
Q psy17173 539 PEDKKSWFSDLIMVNTKSM 557 (1108)
Q Consensus 539 ~eeK~~Wm~~L~~l~~~s~ 557 (1108)
+++..+||.+++..-.+.+
T Consensus 135 E~qya~WMAAcrLAskGkt 153 (173)
T 4f7h_A 135 EKQYAHWMAACRLASKGKT 153 (173)
T ss_dssp HHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhhhhccCCc
Confidence 9999999999987655443
No 121
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=94.08 E-value=0.067 Score=45.57 Aligned_cols=64 Identities=13% Similarity=0.248 Sum_probs=58.3
Q ss_pred ccchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHh
Q psy17173 114 VISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMY 178 (1108)
Q Consensus 114 ~fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~ 178 (1108)
.+|++-|.+..+ ..-..|++..++.-||--+||-..+|.+-|.+.+++.+++.++.+||..|++
T Consensus 6 ~lp~~~v~~iae-s~Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 6 SISAESMKVIAE-SIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp CCCHHHHHHHHH-HTTCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred cCCHHHHHHHHH-HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 589999999984 4444799999999999999999999999999999999999999999999864
No 122
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=93.99 E-value=0.083 Score=45.97 Aligned_cols=65 Identities=11% Similarity=0.002 Sum_probs=52.9
Q ss_pred ccchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHh
Q psy17173 114 VISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMY 178 (1108)
Q Consensus 114 ~fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~ 178 (1108)
.+|.++|.|.+|+-.-..+|+..|..-+.-.++-....|-.-|...++..+++.|+++||..|+.
T Consensus 4 ~LP~A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~ 68 (76)
T 3b0c_W 4 TVPRGTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAK 68 (76)
T ss_dssp CCCHHHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred cccccHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 58999999999754446799999988877766666666666677777888999999999999975
No 123
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=93.94 E-value=0.081 Score=48.73 Aligned_cols=65 Identities=11% Similarity=0.157 Sum_probs=60.1
Q ss_pred ccchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhc
Q psy17173 114 VISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMYA 179 (1108)
Q Consensus 114 ~fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~~ 179 (1108)
-+|..-|.|+.+++. ..||+..+.--++.++||...+|++-|..+++..+++.|+++||.+|+..
T Consensus 28 ~ip~~~I~Rlar~~G-v~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr 92 (102)
T 1id3_B 28 GITKPAIRRLARRGG-VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR 92 (102)
T ss_dssp GSCHHHHHHHHHHTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcC-chhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHH
Confidence 379999999998764 48999999999999999999999999999999999999999999999874
No 124
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=93.82 E-value=0.073 Score=48.27 Aligned_cols=67 Identities=13% Similarity=0.132 Sum_probs=59.5
Q ss_pred CcccchhHHHhhHhhccc-cccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHh
Q psy17173 112 SLVISIDRVQNILQKEFY-FRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMY 178 (1108)
Q Consensus 112 ~l~fpv~~~~~~l~~~~~-~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~ 178 (1108)
.+.+|..+|.|++|+..- ..||+..|..-++-+.|.....+-+-|...+...+++.|+++||..|+.
T Consensus 6 d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~ 73 (93)
T 1n1j_A 6 DIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS 73 (93)
T ss_dssp -CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred cccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 578999999999977633 3799999999999999988888999999999999999999999999986
No 125
>4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus}
Probab=93.13 E-value=0.15 Score=49.92 Aligned_cols=83 Identities=16% Similarity=0.183 Sum_probs=57.4
Q ss_pred eEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCccccccEEeec--C-CCCeEEEEeCC
Q psy17173 462 ERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNAFEIAP--R-DQPSIIIVTKS 538 (1108)
Q Consensus 462 er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~~aF~I~~--~-~~~~~~l~a~s 538 (1108)
.||-|.|.|.-|.+-+++... .-.-.+.|.|++++|........-+++|++.- . +...+-|.|.|
T Consensus 46 KryWfv~kDt~LsyYKSkEe~------------~geP~~~inLrGCEVtPDVnva~~Kf~ikL~ip~~~gm~e~~Lrcds 113 (165)
T 4bbk_A 46 KQYWFVFKDTSIAYFKNKELE------------QGEPIEKLNLRGCEIVPDVNVSGRKFGIKLLIPVADGMNEVYLRCDH 113 (165)
T ss_dssp EEEEEEEETTEEEEESSGGGT------------TSCCSEEEECTTCEEEEEEETTTTEEEEEEEEEETTEEEEEEEEESS
T ss_pred eeEEEEEeCCEEEEEcCHHHh------------cCCCceEEecCccEEecccccccceeeEEEecCCCCcceeeeeecCC
Confidence 578899988777776665432 11223567899999875444444566777752 2 23478999999
Q ss_pred HHHHHHHHHHHHHHHhhH
Q psy17173 539 PEDKKSWFSDLIMVNTKS 556 (1108)
Q Consensus 539 ~eeK~~Wm~~L~~l~~~s 556 (1108)
+++..+||.+++-.-.+.
T Consensus 114 E~QYa~WMAAcrLAskGk 131 (165)
T 4bbk_A 114 EDQYARWMAACILASKGK 131 (165)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhhccccc
Confidence 999999999998764443
No 126
>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A
Probab=92.50 E-value=2.1 Score=41.93 Aligned_cols=107 Identities=8% Similarity=0.040 Sum_probs=72.9
Q ss_pred HHHHHhhccCCCcccccccccceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEE
Q psy17173 422 IHELKKNVDGVDVRDLRPYLEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEM 501 (1108)
Q Consensus 422 l~eiq~~I~g~~~~~l~~~~r~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~ 501 (1108)
+.+.|..=.-|..... ....|++|.+.|-.+-. ++.|.+.|-+.-.+++-.-.. ...|+-
T Consensus 33 ~~~~q~~~~~w~~f~~---ge~Ilk~G~v~KrkGl~--~kkR~liLT~~PrL~Yvdp~~---------------~~~KGe 92 (151)
T 1w1g_A 33 LLEKQAGGNPWHQFVE---NNLILKMGPVDKRKGLF--ARRRQLLLTEGPHLYYVDPVN---------------KVLKGE 92 (151)
T ss_dssp HHHHHHHHCTTGGGTT---TCCEEEEEEEEEEETTE--EEEEEEEEETTTEEEEEETTT---------------TEEEEE
T ss_pred hhhhccccchhhccCC---CCcEEEEEEEEecccCc--ceeEEEEEcCCceEEEEcCcc---------------ccccce
Confidence 4455544445655422 34889999998865533 368999999776666554332 367888
Q ss_pred eeccC-eEEeecCCCccccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHHhh
Q psy17173 502 YFLRK-VEINDYENTDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVNTK 555 (1108)
Q Consensus 502 i~l~~-~~I~d~~d~~~~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~~~ 555 (1108)
|+++. +.+.-..+. .|.|...+ .+|.|.+. ....++|+++|..+...
T Consensus 93 Ipls~~l~ve~k~~~-----~F~I~Tp~-RtY~~~d~-~~~AqeWv~aI~~~~~~ 140 (151)
T 1w1g_A 93 IPWSQELRPEAKNFK-----TFFVHTPN-RTYYLMDP-SGNAHKWCRKIQEVWRQ 140 (151)
T ss_dssp ECCCTTCEEEESSSS-----EEEEEETT-EEEEEECT-TSCHHHHHHHHHHHHHH
T ss_pred EecCCCeeEEEcCCC-----EEEEECCC-ceEEEEcC-ccCHHHHHHHHHHHHHH
Confidence 88885 344433333 89998774 79999887 78899999999877543
No 127
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=92.28 E-value=0.18 Score=42.76 Aligned_cols=61 Identities=18% Similarity=0.235 Sum_probs=54.7
Q ss_pred hHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhc
Q psy17173 118 DRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMYA 179 (1108)
Q Consensus 118 ~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~~ 179 (1108)
--|+++||+ .-..|++..++.-|.-.++-.+.+||+-|..+++.-+++.|+.+||++|+..
T Consensus 5 ~~i~~iLk~-~G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 5 QVIMSILKE-LNVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHH-TTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHH-CCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 357888854 4457999999999999999999999999999999999999999999999875
No 128
>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1
Probab=92.01 E-value=0.56 Score=45.14 Aligned_cols=99 Identities=16% Similarity=0.280 Sum_probs=61.4
Q ss_pred eeeeeeeE-EEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeE-EeecCCCcc----
Q psy17173 444 FYREDTLM-KYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVE-INDYENTDD---- 517 (1108)
Q Consensus 444 li~eG~L~-k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~-I~d~~d~~~---- 517 (1108)
++.+|... |+..++++ +.|++.|-++..++-...+.... + .-++.+++++|. |+...+++.
T Consensus 12 ~L~~Gt~l~K~~~~~~~-k~r~f~l~~~~~~~w~~s~~~~~------~------~~~~~i~i~~I~eIr~G~~s~~~~~~ 78 (131)
T 1mai_A 12 ALLKGSQLLKVKSSSWR-RERFYKLQEDCKTIWQESRKVMR------S------PESQLFSIEDIQEVRMGHRTEGLEKF 78 (131)
T ss_dssp HHHHCEEEEEESSSSCE-EEEEEEECTTSSEEEECCCCTTC------C------TTTTEEEGGGEEEEEESSCSHHHHHH
T ss_pred HHHcCCeEEEECCCCcc-eeEEEEECCCCCEEEeCCcCCCC------C------CcCcEEEHhhhHHHHCCCCCHHHHhh
Confidence 44456654 67666544 57888888777666543111000 0 012356666663 444443322
Q ss_pred -----ccccEEeecCCC-CeEEEEeCCHHHHHHHHHHHHHHHhh
Q psy17173 518 -----IKNAFEIAPRDQ-PSIIIVTKSPEDKKSWFSDLIMVNTK 555 (1108)
Q Consensus 518 -----~~~aF~I~~~~~-~~~~l~a~s~eeK~~Wm~~L~~l~~~ 555 (1108)
...+|.|...+. +++.|.|.|+++.+.|+..|..+...
T Consensus 79 ~~~~~~~~~FsIiy~~~~k~LdlvA~s~~e~~~Wv~gL~~L~~~ 122 (131)
T 1mai_A 79 ARDIPEDRCFSIVFKDQRNTLDLIAPSPADAQHWVQGLRKIIHH 122 (131)
T ss_dssp CTTSCGGGEEEEEESSSCCCEEEECSSHHHHHHHHHHHHHHHC-
T ss_pred hhcCCccceEEEEECCCCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 356899997653 69999999999999999999877443
No 129
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=90.39 E-value=0.22 Score=47.79 Aligned_cols=68 Identities=10% Similarity=-0.000 Sum_probs=55.9
Q ss_pred CcccchhHHHhhHhh-ccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhc
Q psy17173 112 SLVISIDRVQNILQK-EFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMYA 179 (1108)
Q Consensus 112 ~l~fpv~~~~~~l~~-~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~~ 179 (1108)
.+.||+++|.|.+|+ +--..||+..|..-++-+.|-....+-.-|...++..+++.|+++||..|+..
T Consensus 7 d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~ 75 (128)
T 2byk_B 7 DLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTE 75 (128)
T ss_dssp ----CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 467999999999974 33358999999999999888888888888888888899999999999999875
No 130
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=90.10 E-value=0.24 Score=44.30 Aligned_cols=78 Identities=12% Similarity=0.083 Sum_probs=62.0
Q ss_pred CCCcccchhHHHhhH-hhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhcChhhhhhhc
Q psy17173 110 KSSLVISIDRVQNIL-QKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMYADKALLELFF 188 (1108)
Q Consensus 110 r~~l~fpv~~~~~~l-~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~~D~eL~~l~~ 188 (1108)
||.|.|.|++|-.-. +++ +-.++..+..-|+.+++-.+.+|.+=+..+|+.-+++.|+++|+.++++.++.|.+++.
T Consensus 11 Kaal~~~V~ki~~e~~~~~--g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn~~L~~~l~ 88 (90)
T 3v9r_A 11 KARLWIRVEERLQQVLSSE--DIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQPDLQERVT 88 (90)
T ss_dssp HHHHHHHHHHHHHHHSCSS--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhc--CceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhChHHHHHhh
Confidence 455678888876543 222 24577777777888887777888888899999999999999999999999999988774
Q ss_pred c
Q psy17173 189 Q 189 (1108)
Q Consensus 189 ~ 189 (1108)
.
T Consensus 89 ~ 89 (90)
T 3v9r_A 89 Q 89 (90)
T ss_dssp C
T ss_pred c
Confidence 3
No 131
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=89.50 E-value=0.28 Score=45.83 Aligned_cols=68 Identities=9% Similarity=0.107 Sum_probs=58.5
Q ss_pred cccchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhcCh
Q psy17173 113 LVISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMYADK 181 (1108)
Q Consensus 113 l~fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~~D~ 181 (1108)
+.+|-+-|.|+.|++ -..||+..+..-++.+++....+|.+-|..+++.-+++.|+++||.+|++...
T Consensus 6 ~~lP~a~I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g 73 (111)
T 3b0c_T 6 PEIASSLIKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQG 73 (111)
T ss_dssp ----CHHHHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCC
Confidence 457899999999777 45899999999999999999999999999999999999999999999998653
No 132
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=87.96 E-value=0.21 Score=46.39 Aligned_cols=77 Identities=8% Similarity=0.142 Sum_probs=62.0
Q ss_pred CCCcccchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhcChhhhhhh
Q psy17173 110 KSSLVISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMYADKALLELF 187 (1108)
Q Consensus 110 r~~l~fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~~D~eL~~l~ 187 (1108)
||.|.|.|+||-+---... .-+++..+..-|+.+++....+|.+=+..+++.-+++.|+++||.++++.++.|.+.+
T Consensus 26 Kaal~y~V~rIvke~gaer-~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~~~L~~~l 102 (113)
T 4dra_A 26 KAAVHYTVGCLCEEVALDK-EMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSLLKYI 102 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHc-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhCHHHHHHH
Confidence 5678899998765431111 2348888888888888888889999999999999999999999999999998887766
No 133
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=87.48 E-value=0.32 Score=44.96 Aligned_cols=77 Identities=6% Similarity=0.082 Sum_probs=62.8
Q ss_pred CCCcccchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhcChhhhhhh
Q psy17173 110 KSSLVISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMYADKALLELF 187 (1108)
Q Consensus 110 r~~l~fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~~D~eL~~l~ 187 (1108)
|+.|.|.|+||-+---. ....|++..+..-|+-+++-.+.+|.+=|..+++.-+++.|+++||.+|++.++.|.+.+
T Consensus 18 Kaal~~~V~rI~~~~g~-~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn~~l~~~l 94 (107)
T 3b0b_B 18 RAAVHYTTGCLCQDVAE-DKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYI 94 (107)
T ss_dssp HHHHHHHHHHHHHHHHH-HHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh-hcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhCHHHHHHH
Confidence 55677888888765421 123689999888888888777889999999999999999999999999999998886554
No 134
>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein, pleckstrin homology domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=84.46 E-value=4.1 Score=38.79 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=32.0
Q ss_pred cccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17173 517 DIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVN 553 (1108)
Q Consensus 517 ~~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~ 553 (1108)
+..|.|.|...++..|+|-|.++.++++|+..|+.+.
T Consensus 93 D~~nTFVlK~~n~~eyi~ea~d~~q~~sWla~Ir~C~ 129 (136)
T 1v5m_A 93 EKDNTFVLKVENGAEYILETIDSLQKHSWVADIQGCV 129 (136)
T ss_dssp CCTTEECCBCTTSCBEEEECSSHHHHHHHHHHHHHHH
T ss_pred CccceEEEEecCCcEEEEEcCCHHHHHHHHHHHHhhc
Confidence 3468999997777789999999999999999997664
No 135
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=82.57 E-value=1.5 Score=41.35 Aligned_cols=68 Identities=10% Similarity=0.099 Sum_probs=56.9
Q ss_pred CCCcccchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHh
Q psy17173 110 KSSLVISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMY 178 (1108)
Q Consensus 110 r~~l~fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~ 178 (1108)
+..-.|.+ .|++.||+=.-..+|++.|.--|...+..+...|-.-|+.-++.+++.-||.++|+.|++
T Consensus 33 ~~~esy~~-YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 100 (126)
T 1tzy_B 33 SRKESYSI-YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVR 100 (126)
T ss_dssp -CCCCCHH-HHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cccccHHH-HHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 34456766 799999654444689999998899999999988989999999999999999999999986
No 136
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=81.51 E-value=0.91 Score=43.66 Aligned_cols=77 Identities=8% Similarity=0.106 Sum_probs=63.3
Q ss_pred CCCcccchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhcChhhhhhh
Q psy17173 110 KSSLVISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMYADKALLELF 187 (1108)
Q Consensus 110 r~~l~fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~~D~eL~~l~ 187 (1108)
||.|.|-|++|-.-.-. ...-+++..+..-|+.+++....+|.+=+..++++-+++.|++.||.++++.++.|...+
T Consensus 18 KaAl~y~VgkIvee~~~-~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn~~L~~~L 94 (140)
T 3vh5_A 18 RAAVHYTTGALAQDVAE-DKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYI 94 (140)
T ss_dssp HHHHHHHHHHHHHHHHH-HHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCHHHHHHH
Confidence 67788999998764311 123468888888888888888889999999999999999999999999999999997766
No 137
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=80.32 E-value=2 Score=43.30 Aligned_cols=71 Identities=10% Similarity=0.055 Sum_probs=53.7
Q ss_pred CCCCCcccchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHh
Q psy17173 108 KKKSSLVISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMY 178 (1108)
Q Consensus 108 ~~r~~l~fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~ 178 (1108)
..--.+.+|...|.|++|+-.-..||+..|...|+-+++-....|-..|...++..+++.|+++||.+|+.
T Consensus 9 ~~~eD~~LP~A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~ 79 (179)
T 1jfi_B 9 GNDDDLTIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALE 79 (179)
T ss_dssp ---CCCCCCHHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CchhhhhcCHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 34455789999999999654335899999998877766655556666666777778888999999999976
No 138
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=78.00 E-value=2.9 Score=39.29 Aligned_cols=66 Identities=6% Similarity=0.070 Sum_probs=55.8
Q ss_pred CcccchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHh
Q psy17173 112 SLVISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMY 178 (1108)
Q Consensus 112 ~l~fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~ 178 (1108)
.-.|. -.|++.||+=.-..+|++.|.--|...++.+...|-.-|+.-++..++.-|+.++|+.|++
T Consensus 32 ~esy~-~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 97 (123)
T 2nqb_D 32 KESYA-IYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVR 97 (123)
T ss_dssp CCCSH-HHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred cchHH-HHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHH
Confidence 34555 6789999654444689999998899999999999999999999999999999999999986
No 139
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=73.86 E-value=3.2 Score=35.81 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhcCCCCcCchHHHHHHHHHHHHHHHhcc
Q psy17173 33 VSSLHSILKQVHNSLDINTDALYYTEKLILKLLNLLCS 70 (1108)
Q Consensus 33 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~ 70 (1108)
...++||++++||+..+..||.+.+.+.+..++..|++
T Consensus 7 ~A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~ 44 (76)
T 3b0c_W 7 RGTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAE 44 (76)
T ss_dssp HHHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999998888888876
No 140
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=70.88 E-value=5.5 Score=34.89 Aligned_cols=49 Identities=10% Similarity=0.023 Sum_probs=44.9
Q ss_pred cccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHh
Q psy17173 130 FRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMY 178 (1108)
Q Consensus 130 ~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~ 178 (1108)
..|+.++|..-|.-+.|....++.|-|...+..-++..|.|+|+++|.+
T Consensus 25 ~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~r 73 (82)
T 3nqj_A 25 DFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 73 (82)
T ss_dssp CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHH
Confidence 5799999999999999998899999998889999999999999999975
No 141
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=70.20 E-value=5.1 Score=35.73 Aligned_cols=64 Identities=6% Similarity=0.146 Sum_probs=53.6
Q ss_pred ccchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cccccchhhHHh
Q psy17173 114 VISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKV-DISIQDIDVAMY 178 (1108)
Q Consensus 114 ~fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~-~itp~~i~~a~~ 178 (1108)
.||=..|.+++ +...+..++..+.+-++++---...|+.|.|-.....-... -|.|.||+-|.+
T Consensus 16 ~f~k~~vKrl~-~~~~~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~r 80 (89)
T 1bh9_B 16 AFPKAAIKRLI-QSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVR 80 (89)
T ss_dssp CCCHHHHHHHH-HHHHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHH
T ss_pred cCCHHHHHHHH-HHHcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Confidence 47777888887 67778899999999999999999999999998877765444 599999999975
No 142
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=68.65 E-value=6.3 Score=34.10 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=44.1
Q ss_pred cccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHh
Q psy17173 130 FRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMY 178 (1108)
Q Consensus 130 ~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~ 178 (1108)
..|+.++|..-|.-+.|....++.|-|...+..-++..|.|+|+++|.+
T Consensus 23 ~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~r 71 (77)
T 2hue_B 23 DLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARR 71 (77)
T ss_dssp SCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHH
Confidence 4799999999998888877788999999999999999999999999975
No 143
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=66.92 E-value=51 Score=30.97 Aligned_cols=102 Identities=10% Similarity=0.076 Sum_probs=75.8
Q ss_pred hhHHHHHHHHHHhcC---CCCcCchHHHHHHHHHHHHHHHhccCCCCCChhhHHHHHHhhCCCCCchhhHHHHHHHHHcC
Q psy17173 31 TLVSSLHSILKQVHN---SLDINTDALYYTEKLILKLLNLLCSKPLPLTTSDMEGKIKKYFPNPISEWTFNEAKQALEKG 107 (1108)
Q Consensus 31 ~~~~~~~~~~~~~~p---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 107 (1108)
-|.--.|.|.+...+ ++-...+|+.-+.+..--+|-.|-. +.-- +..+|
T Consensus 6 PF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFE-----------d~nl------caiHA----------- 57 (121)
T 2ly8_A 6 PFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLE-----------HTNL------LALHL----------- 57 (121)
T ss_dssp HHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHH-----------HHHH------HTTTC-----------
T ss_pred chHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHH-----------HHhH------HHHcC-----------
Confidence 466677888888877 6788888888887666555543321 1000 00111
Q ss_pred CCCCCcccchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHh
Q psy17173 108 KKKSSLVISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMY 178 (1108)
Q Consensus 108 ~~r~~l~fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~ 178 (1108)
.|+|. .||++.+---+..|||-...+|++=|..|++..+++-++..||..|++
T Consensus 58 -~~gGv-----------------kRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alk 110 (121)
T 2ly8_A 58 -VPRGS-----------------KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALK 110 (121)
T ss_dssp -CCCCS-----------------SCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHH
T ss_pred -CccCc-----------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHH
Confidence 33332 699999999999999999999999999999999999999999999975
No 144
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=64.19 E-value=6.6 Score=40.25 Aligned_cols=61 Identities=10% Similarity=0.129 Sum_probs=52.2
Q ss_pred hHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHh
Q psy17173 118 DRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMY 178 (1108)
Q Consensus 118 ~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~ 178 (1108)
-.|++.||+-.-...++..|.-+|...+..+...|-.-|+.-++..++..+|+++|+.|++
T Consensus 7 ~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avr 67 (192)
T 2jss_A 7 SYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVR 67 (192)
T ss_dssp HHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHH
T ss_pred HHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 3588899766655789999999988888888888888888888889999999999999986
No 145
>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae}
Probab=64.08 E-value=1.6e+02 Score=31.90 Aligned_cols=82 Identities=12% Similarity=0.179 Sum_probs=58.1
Q ss_pred eeEEEEeecCe-----EEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCccccccEEeecCCCCeEEEE
Q psy17173 461 TERKVYFFDGV-----LILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNAFEIAPRDQPSIIIV 535 (1108)
Q Consensus 461 ~er~~FLF~d~-----Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~~aF~I~~~~~~~~~l~ 535 (1108)
+.|++.|--.. +.++|.+.. .+..|+......|+++...+..-.. ...|.|.- ++.|.-.
T Consensus 135 K~R~LcLaV~~d~sGRV~LhKaKeN-----------~ngsFsIGKTW~L~ELk~Id~~~~~--~~gF~LTl--~K~YyW~ 199 (320)
T 3a58_A 135 KKRLLILSAKPNNAKLIQIHKAREN-----------SDGSFQIGRTWQLTELVRVEKDLEI--SEGFILTM--SKKYYWE 199 (320)
T ss_dssp EEEEEEEEECSSCTTCEEEEEEEEC-----------GGGCEEEEEEEEGGGCCEEEECSSC--TTEEEEES--SSEEEEE
T ss_pred CceEEEEEEecCCCceEEEEEEEec-----------CCCceEecceechhhhhhhhcccCC--CCceEEEe--CCceEEe
Confidence 57877664333 455554432 2348999999999999988831111 14777766 5689999
Q ss_pred eCCHHHHHHHHHHHHHHHhhHH
Q psy17173 536 TKSPEDKKSWFSDLIMVNTKSM 557 (1108)
Q Consensus 536 a~s~eeK~~Wm~~L~~l~~~s~ 557 (1108)
|.+..||+.|+..|.++-.+.+
T Consensus 200 A~s~kER~~FI~sLvKiy~KYt 221 (320)
T 3a58_A 200 TNSAKERTVFIKSLITLYIQTF 221 (320)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999988755543
No 146
>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.55 E-value=87 Score=29.67 Aligned_cols=96 Identities=11% Similarity=0.077 Sum_probs=60.8
Q ss_pred cceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCcc----
Q psy17173 442 EEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDD---- 517 (1108)
Q Consensus 442 r~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~---- 517 (1108)
...|+||-++..+.+.+..+-+|.-|=.+.|-+.+.....+ +..-|+|++|--....+...
T Consensus 6 s~vlkeGWmVH~t~~d~~rKRHYWrLD~K~Itlf~~e~~~k---------------~ykeIpLseIL~v~~~~~~~~~~~ 70 (129)
T 2d9z_A 6 SGMVKEGWMVHYTSRDNLRKRHYWRLDSKCLTLFQNESGSK---------------YYKEIPLSEILRISSPRDFTNISQ 70 (129)
T ss_dssp TTSEEEEEEEEEESSCCCCEEEEEEEESSCEEEESCSSCCS---------------CCCEECTTTCCEECCTTCCCCSSS
T ss_pred CceeecceEEEEccCCccccceeeEecCCeEEEEecCCCCc---------------eeceeeHHHhcccccccCccccCC
Confidence 47899999998888766534455555566666666544322 22238899886655543222
Q ss_pred --ccccEEeecCCCCeEEEEeC------------C---HHHHHHHHHHHHHHH
Q psy17173 518 --IKNAFEIAPRDQPSIIIVTK------------S---PEDKKSWFSDLIMVN 553 (1108)
Q Consensus 518 --~~~aF~I~~~~~~~~~l~a~------------s---~eeK~~Wm~~L~~l~ 553 (1108)
..|.|+|... +-.|.+... | .+.-+.|..+|.++.
T Consensus 71 ~~~phcFEi~T~-~~~y~Vge~~~~~~~~~~~~~sg~g~~~a~~We~aIrqAL 122 (129)
T 2d9z_A 71 GSNPHCFEIITD-TMVYFVGENNGDSSHNPVLAATGVGLDVAQSWEKAIRQAL 122 (129)
T ss_dssp CSCCCSEEEECS-SCEEEECBCCSCCSCCTTTTTTTCBHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEEC-CEEEEEccCCCCCCCCccccccccchHHHHHHHHHHHHhc
Confidence 2489999864 444444331 1 588889999998753
No 147
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=62.81 E-value=7.4 Score=38.05 Aligned_cols=69 Identities=10% Similarity=0.038 Sum_probs=56.6
Q ss_pred CCCcccchhHHHhhHhhcc------ccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHh
Q psy17173 110 KSSLVISIDRVQNILQKEF------YFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMY 178 (1108)
Q Consensus 110 r~~l~fpv~~~~~~l~~~~------~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~ 178 (1108)
-..|.+|.--+.|++|+=. ...|+.++|..-|.-+.|....++.|-|...+..-++..|.++|+++|.+
T Consensus 73 SteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArr 147 (156)
T 3r45_A 73 STHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 147 (156)
T ss_dssp --CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHH
Confidence 3457777777777776433 25799999999999999999899999998888888999999999999975
No 148
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=59.61 E-value=9.4 Score=36.78 Aligned_cols=69 Identities=10% Similarity=0.038 Sum_probs=55.6
Q ss_pred CCCcccchhHHHhhHhhcc------ccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHh
Q psy17173 110 KSSLVISIDRVQNILQKEF------YFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMY 178 (1108)
Q Consensus 110 r~~l~fpv~~~~~~l~~~~------~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~ 178 (1108)
-..|.+|.--+.|++|+=. ...|+.++|..-|.-+.|....++.|-|...+..-++..|.++|+++|.+
T Consensus 57 st~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArr 131 (140)
T 3nqu_A 57 STHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 131 (140)
T ss_dssp --CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHH
Confidence 3456677666677765332 35799999999999999998899999998888888999999999999975
No 149
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=58.30 E-value=10 Score=34.52 Aligned_cols=69 Identities=12% Similarity=0.122 Sum_probs=52.7
Q ss_pred CCCcccchhHHHhhHhhcc-------ccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHh
Q psy17173 110 KSSLVISIDRVQNILQKEF-------YFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMY 178 (1108)
Q Consensus 110 r~~l~fpv~~~~~~l~~~~-------~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~ 178 (1108)
-..|.+|.--+.|+.|+-. ...|+.++|..-|.-+.|-....+.|-|...+..-++..|.|+|+++|.+
T Consensus 23 st~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 98 (100)
T 2yfv_A 23 STDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARR 98 (100)
T ss_dssp -----CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence 3467777777777775432 15799999999998888888888999999999999999999999999975
No 150
>2adz_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} SCOP: b.55.1.1
Probab=54.40 E-value=25 Score=35.36 Aligned_cols=52 Identities=17% Similarity=0.257 Sum_probs=39.1
Q ss_pred EeeccCeEEe-ecCCCccccccEEeecCCCC-eEEEEeCCHHHHHHHHHHHHHH
Q psy17173 501 MYFLRKVEIN-DYENTDDIKNAFEIAPRDQP-SIIIVTKSPEDKKSWFSDLIMV 552 (1108)
Q Consensus 501 ~i~l~~~~I~-d~~d~~~~~~aF~I~~~~~~-~~~l~a~s~eeK~~Wm~~L~~l 552 (1108)
.|+|.-.-|. ...-+|.-.++|||.+.|+. +.+|.|++..+-++|+++|...
T Consensus 122 ~IPLkMayvtR~~~~tD~e~r~fEv~s~DG~~t~iLrc~D~a~a~~Wf~aI~sn 175 (178)
T 2adz_A 122 HVSLKMAYVSRRCTPTDPEPRYLEICAADGQDAVFLRAKDEASARSWAGAIQAQ 175 (178)
T ss_dssp EEETTTCEEEEECCSSCCSSCEEEEEETTTTEEEEECCSSHHHHHHHHHHHHHH
T ss_pred eecHHHHHHHHhccCCCCCccEEEEEcCCCCeeEEEEeCCHHHHHHHHHHHHHh
Confidence 4666655543 33334445789999988765 8999999999999999999754
No 151
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=53.37 E-value=15 Score=35.29 Aligned_cols=68 Identities=15% Similarity=0.132 Sum_probs=56.1
Q ss_pred CCcccchhHHHhhHhhcc----ccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHh
Q psy17173 111 SSLVISIDRVQNILQKEF----YFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMY 178 (1108)
Q Consensus 111 ~~l~fpv~~~~~~l~~~~----~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~ 178 (1108)
..|.+|.--+.|++|+=. -..|+.++|..-|.-+.|....++.|-|...+..-++..|.|+|+++|.+
T Consensus 59 t~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 130 (136)
T 1tzy_C 59 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
T ss_dssp CSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred hhhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHH
Confidence 457777777777775331 24799999999999888888888999999999999999999999999975
No 152
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=49.88 E-value=11 Score=39.52 Aligned_cols=56 Identities=13% Similarity=0.110 Sum_probs=48.7
Q ss_pred hhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHh
Q psy17173 122 NILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMY 178 (1108)
Q Consensus 122 ~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i~~a~~ 178 (1108)
|+.|+|. ..||++.+.--+..|||-...+|+.=|..|++..+++-+++.||..|+.
T Consensus 169 RlaRrgG-VkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALK 224 (235)
T 2l5a_A 169 EDGDKGG-VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALK 224 (235)
T ss_dssp TTSCCTT-CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHH
T ss_pred HHhhcCC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHH
Confidence 4443332 3789999888999999999999999999999999999999999999976
No 153
>3hie_A Protein PSL1, exocyst complex component SEC3; PH domain, dimer, domain swapping, phosphate-binding, coiled coil, exocytosis; 2.00A {Saccharomyces cerevisiae}
Probab=49.33 E-value=64 Score=32.11 Aligned_cols=58 Identities=12% Similarity=0.159 Sum_probs=47.0
Q ss_pred ceeEEEEEeeccCeEEeecCCCccccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHHhh
Q psy17173 494 YEFKCKEMYFLRKVEINDYENTDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVNTK 555 (1108)
Q Consensus 494 ~~y~~k~~i~l~~~~I~d~~d~~~~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~~~ 555 (1108)
..|+......|+++...+..+.. ...|.|.- ++.|--.|.|..||..++..|.++-.+
T Consensus 92 gsfsiGkTW~L~ELk~Ie~~~~~--~~gF~ltl--~K~Y~W~a~s~~Er~~FI~sL~K~y~k 149 (171)
T 3hie_A 92 GSFQIGRTWQLTELVRVEKDLEI--SEGFILTM--SKKYYWETNSAKERTVFIKSLITLYIQ 149 (171)
T ss_dssp SCEEEEEEEEGGGCCEEEECSSC--TTEEEEES--SSEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CcEEeeeeeecccceeeeccCCC--CCcEEEEe--CCeEEEecCCHHHHHHHHHHHHHHHHH
Confidence 48999999999999998875532 35777775 479999999999999999999775443
No 154
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=49.08 E-value=25 Score=36.73 Aligned_cols=48 Identities=17% Similarity=0.242 Sum_probs=34.7
Q ss_pred eeccCeEEeecCCCccccccEEeecCCCCeEEEEeCCHHHHHHHHHHHH
Q psy17173 502 YFLRKVEINDYENTDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLI 550 (1108)
Q Consensus 502 i~l~~~~I~d~~d~~~~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~ 550 (1108)
+.+..+......+...-.+.|.|... +..+.|.|.|++++..|+.+|.
T Consensus 178 ~~~~~i~s~~~~~~~~~~~~f~iit~-~r~~~~~a~s~~e~~~Wi~~lq 225 (228)
T 3tfm_A 178 LDVGLIDSVCASDSPDRPNSFVIITA-NRVLHCNADTPEEMHHWITLLQ 225 (228)
T ss_dssp EEGGGEEEEEECCCSSCTTEEEEEET-TEEEEEECSSHHHHHHHHHHHC
T ss_pred CChhheeccccCCCCCCCCcEEEEeC-CceEEEEcCCHHHHHHHHHHHh
Confidence 34444444334444456788998776 5689999999999999999884
No 155
>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=48.03 E-value=75 Score=29.95 Aligned_cols=94 Identities=14% Similarity=0.180 Sum_probs=58.5
Q ss_pred cceeeeeeeEEEeCCCCcceeEEEEee-cCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCcc---
Q psy17173 442 EEFYREDTLMKYDGKSNRLTERKVYFF-DGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDD--- 517 (1108)
Q Consensus 442 r~li~eG~L~k~~~~~~~~~er~~FLF-~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~--- 517 (1108)
...|+||-++..+.+.+..+ ||++-. .+.|-+.+.....+ +..-|+|++|--........
T Consensus 6 s~vlkeGW~VH~t~~d~~rK-RHYWrLD~K~Itlf~~e~~~~---------------~ykeIpL~eIl~v~~~~~~~~l~ 69 (125)
T 2coa_A 6 SGTLREGWVVHYSNKDTLRK-RHYWRLDCKCITLFQNNTTNR---------------YYKEIPLSEILTVESAQNFSLVP 69 (125)
T ss_dssp CSCSEEEEEEECCSSSCCCE-EEEEEECSSEEEEESSSSCSS---------------CSEEEETTTCCEEEESCCCSSSC
T ss_pred CceeecceEEEEccCCcccc-ceeeEecCCeEEEEecCCCCc---------------eeeeeehhHeecccccccccccC
Confidence 47899999998888766544 555554 55666666544322 22348888877665543222
Q ss_pred ---ccccEEeecCCCCeEEEEeC-----------CHHHHHHHHHHHHHH
Q psy17173 518 ---IKNAFEIAPRDQPSIIIVTK-----------SPEDKKSWFSDLIMV 552 (1108)
Q Consensus 518 ---~~~aF~I~~~~~~~~~l~a~-----------s~eeK~~Wm~~L~~l 552 (1108)
..|.|+|... +-.|.+.+. ..+..+.|..+|.+.
T Consensus 70 ~~~~~hcFEi~T~-~~~yyVg~~~~~~p~~~sg~g~~~a~~W~~aIrqA 117 (125)
T 2coa_A 70 PGTNPHCFEIVTA-NATYFVGEMPGGTPGGPSGQGAEAARGWETAIRQA 117 (125)
T ss_dssp TTSCCEEEEEECS-SCCCCEECCSCCCSSSCCCCCSHHHHHHHHHHHHH
T ss_pred CCCCCceEEEEeC-CeEEEEccCCCCCCCCcCccccHHHHHHHHHHHhh
Confidence 3488999874 334444331 125688999999765
No 156
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=42.85 E-value=49 Score=35.47 Aligned_cols=52 Identities=17% Similarity=0.248 Sum_probs=37.4
Q ss_pred EeeccCeEEeec-CCCccccccEEeecCCCC-eEEEEeCCHHHHHHHHHHHHHH
Q psy17173 501 MYFLRKVEINDY-ENTDDIKNAFEIAPRDQP-SIIIVTKSPEDKKSWFSDLIMV 552 (1108)
Q Consensus 501 ~i~l~~~~I~d~-~d~~~~~~aF~I~~~~~~-~~~l~a~s~eeK~~Wm~~L~~l 552 (1108)
.++|.-..+.-. ..++.-.++|+|.+.++. +++|.|.+.++-++|+++|...
T Consensus 207 ~ipL~m~~~tR~~~~~d~~~~~fev~s~dG~~t~~l~~~d~~~a~~W~~ai~~~ 260 (263)
T 1z87_A 207 HVSLKMAYVSRRCTPTDPEPRYLEICAADGQDAVFLRAKDEASARSWAGAIQAQ 260 (263)
T ss_dssp EEESSSEEEEEECCSSCSSSCEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHH
T ss_pred ccCcceeeeeeeccccCCCCceEEEECCCCCeeEEEEECCHHHHHHHHHHHHHH
Confidence 344544444332 233445789999988765 6899999999999999999764
No 157
>3a98_B Engulfment and cell motility protein 1; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} PDB: 2vsz_A
Probab=33.10 E-value=1.4e+02 Score=30.52 Aligned_cols=33 Identities=15% Similarity=0.200 Sum_probs=30.1
Q ss_pred ccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17173 520 NAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMV 552 (1108)
Q Consensus 520 ~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l 552 (1108)
.+|.|....+.++.|+|.|+++...|++-|.+|
T Consensus 116 laFSii~~~~~~L~fvA~s~~~~~~W~DGL~~L 148 (203)
T 3a98_B 116 LAFSILYDSNCQLNFIAPDKHEYCIWTDGLNAL 148 (203)
T ss_dssp GEEEEEETTTEEEEEECSSHHHHHHHHHHHHHH
T ss_pred eEEEEecCCCceEEEecCCHHHHHHHHHHHHHH
Confidence 588988766679999999999999999999998
No 158
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=31.93 E-value=1.4e+02 Score=28.97 Aligned_cols=73 Identities=21% Similarity=0.272 Sum_probs=48.6
Q ss_pred ccCHHHHHHHHccCCCCChhH--HHHHHHhc-cccCCHHHHHHHHHHhcCCCCCCcccccCccchhhhhhHHHHHHHhhh
Q psy17173 609 GATLHKLIERLTYHIYADPAF--IGTFLTTY-RSFTTPTELLDLLIDRFNVPDPNKVFENNNADIEESILREDIIRYKKE 685 (1108)
Q Consensus 609 agTL~kLIe~Lt~~~~~D~~f--~~~FLlTy-rsFttp~~LL~~Li~Ry~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1108)
+.+++++|++.|++...+++. +--|-=.- ..-..|.+.+..|..|.....|
T Consensus 9 ~~~~~~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~~n~-------------------------- 62 (149)
T 3g2s_A 9 PETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQE-------------------------- 62 (149)
T ss_dssp CCCHHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTCSSH--------------------------
T ss_pred CCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcCCCH--------------------------
Confidence 478999999999986544432 21111111 1225677888888888764321
Q ss_pred ccchhhhHHHHHHHHHHhhcccccc
Q psy17173 686 LCQPVQFRVLNVFRQWVQHHFYDFQ 710 (1108)
Q Consensus 686 ~~~~vq~rVl~vl~~Wi~~~~~DF~ 710 (1108)
.+|++.+.+|..=++++...|.
T Consensus 63 ---~v~l~AL~LLe~cvkNCG~~fh 84 (149)
T 3g2s_A 63 ---WEAIQALTVLETCMKSCGKRFH 84 (149)
T ss_dssp ---HHHHHHHHHHHHHHHHCCHHHH
T ss_pred ---HHHHHHHHHHHHHHHhcCHHHH
Confidence 3677888999999999988775
No 159
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=30.29 E-value=1.3e+02 Score=29.73 Aligned_cols=79 Identities=18% Similarity=0.243 Sum_probs=48.3
Q ss_pred CcccccccCHHHHHHHHccCCCCChhH--HHHHHHhcc-ccCCHHHHHHHHHHhcCCCCCCcccccCccchhhhhhHHHH
Q psy17173 603 NMPLIKGATLHKLIERLTYHIYADPAF--IGTFLTTYR-SFTTPTELLDLLIDRFNVPDPNKVFENNNADIEESILREDI 679 (1108)
Q Consensus 603 ~~~~IkagTL~kLIe~Lt~~~~~D~~f--~~~FLlTyr-sFttp~~LL~~Li~Ry~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (1108)
+++......++++|++.|++...+++. +-.+--.-+ .-..|.+.+..|..|.....+
T Consensus 7 ~M~~~~~~p~~~~IekATs~~~~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~~~n~-------------------- 66 (163)
T 1x5b_A 7 GMPLFTANPFEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVP-------------------- 66 (163)
T ss_dssp CCCCCCCCTTHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTCSSH--------------------
T ss_pred CCCCcCCChHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCH--------------------
Confidence 444555567999999999975443332 111111111 125677777777777764321
Q ss_pred HHHhhhccchhhhHHHHHHHHHHhhcccccc
Q psy17173 680 IRYKKELCQPVQFRVLNVFRQWVQHHFYDFQ 710 (1108)
Q Consensus 680 ~~~~~~~~~~vq~rVl~vl~~Wi~~~~~DF~ 710 (1108)
.+|++.+.+|..=|.+|...|.
T Consensus 67 ---------~vql~AL~LLd~~vkNcG~~Fh 88 (163)
T 1x5b_A 67 ---------HVALQALTLLGACVANCGKIFH 88 (163)
T ss_dssp ---------HHHHHHHHHHHHHHHHTCHHHH
T ss_pred ---------HHHHHHHHHHHHHHHHhhHHHH
Confidence 2567778888888888776664
No 160
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=28.04 E-value=76 Score=27.79 Aligned_cols=65 Identities=9% Similarity=0.085 Sum_probs=44.7
Q ss_pred CCCCcccchhHHHhhHhhcccc--ccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccch
Q psy17173 109 KKSSLVISIDRVQNILQKEFYF--RKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDI 173 (1108)
Q Consensus 109 ~r~~l~fpv~~~~~~l~~~~~~--~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp~~i 173 (1108)
+.++..||-+-|+|+|+...-. -||+..|.--++..++-++.|..--|...++.-....+..+|+
T Consensus 7 ~~~~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~L 73 (84)
T 4dra_E 7 AGAGSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQL 73 (84)
T ss_dssp ----CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHH
Confidence 3567789999999999744432 5899999888888888888888777777666543334555554
No 161
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=24.96 E-value=1.3e+02 Score=31.26 Aligned_cols=70 Identities=14% Similarity=0.215 Sum_probs=43.7
Q ss_pred ccCHHHHHHHHccCCCCChh------HHHHHHHhccccCCHHHHHHHHHHhcCCCCCCcccccCccchhhhhhHHHHHHH
Q psy17173 609 GATLHKLIERLTYHIYADPA------FIGTFLTTYRSFTTPTELLDLLIDRFNVPDPNKVFENNNADIEESILREDIIRY 682 (1108)
Q Consensus 609 agTL~kLIe~Lt~~~~~D~~------f~~~FLlTyrsFttp~~LL~~Li~Ry~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1108)
..+++++|++.|++...+++ +.+..- ..=..|.+.+..|..|.....+
T Consensus 6 ~~~~~~~i~kAT~~~~~~~dw~~ileicD~I~---~~~~~~k~a~ral~krl~~~n~----------------------- 59 (226)
T 3zyq_A 6 SGTFERLLDKATSQLLLETDWESILQICDLIR---QGDTQAKYAVNSIKKKVNDKNP----------------------- 59 (226)
T ss_dssp -CHHHHHHHHHTCTTCSSCCHHHHHHHHHHHH---TTSSCHHHHHHHHHHHHTCSSH-----------------------
T ss_pred CchHHHHHHHHcCCCCCCcCHHHHHHHHHHHh---CCCccHHHHHHHHHHHHcCCCH-----------------------
Confidence 36899999999998654433 222221 1235678888888888764322
Q ss_pred hhhccchhhhHHHHHHHHHHhhcccccc
Q psy17173 683 KKELCQPVQFRVLNVFRQWVQHHFYDFQ 710 (1108)
Q Consensus 683 ~~~~~~~vq~rVl~vl~~Wi~~~~~DF~ 710 (1108)
.+|++.+.+|..=|+++...|.
T Consensus 60 ------~v~l~aL~LLe~~vkNcG~~f~ 81 (226)
T 3zyq_A 60 ------HVALYALEVMESVVKNCGQTVH 81 (226)
T ss_dssp ------HHHHHHHHHHHHHHHHHCHHHH
T ss_pred ------HHHHHHHHHHHHHHHhcchHHH
Confidence 2556667777777777665554
No 162
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=23.99 E-value=1.7e+02 Score=28.30 Aligned_cols=68 Identities=18% Similarity=0.196 Sum_probs=46.0
Q ss_pred CHHHHHHHHccCCCCChhH------HHHHHHhccccCCHHHHHHHHHHhcCCCCCCcccccCccchhhhhhHHHHHHHhh
Q psy17173 611 TLHKLIERLTYHIYADPAF------IGTFLTTYRSFTTPTELLDLLIDRFNVPDPNKVFENNNADIEESILREDIIRYKK 684 (1108)
Q Consensus 611 TL~kLIe~Lt~~~~~D~~f------~~~FLlTyrsFttp~~LL~~Li~Ry~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1108)
|++++|++.|++...++++ .+..=.. -..|.+.+..|..|.....+
T Consensus 1 s~~~~iekATs~~l~~~dw~~~leicD~I~~~---~~~~k~a~rai~krl~~~n~------------------------- 52 (148)
T 1mhq_A 1 SLELWLNKATDPSMSEQDWSAIQNFCEQVNTD---PNGPTHAPWLLAHKIQSPQE------------------------- 52 (148)
T ss_dssp CHHHHHHHHHCTTCSSCCHHHHHHHHHHHHHS---SHHHHHHHHHHHHHHTCSSH-------------------------
T ss_pred CHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcC---CccHHHHHHHHHHHhcCCCH-------------------------
Confidence 5899999999986544432 2222111 24678888888888764321
Q ss_pred hccchhhhHHHHHHHHHHhhcccccc
Q psy17173 685 ELCQPVQFRVLNVFRQWVQHHFYDFQ 710 (1108)
Q Consensus 685 ~~~~~vq~rVl~vl~~Wi~~~~~DF~ 710 (1108)
.+|++.+.+|..=|.+|..-|.
T Consensus 53 ----~vql~AL~LLe~~vkNCG~~fh 74 (148)
T 1mhq_A 53 ----KEALYALTVLEMCMNHCGEKFH 74 (148)
T ss_dssp ----HHHHHHHHHHHHHHHHSCHHHH
T ss_pred ----HHHHHHHHHHHHHHHHcCHHHH
Confidence 3677888899989999887774
No 163
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=23.61 E-value=47 Score=31.45 Aligned_cols=39 Identities=10% Similarity=0.116 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhcCcccccccchhhHHhcChhhhhhh
Q psy17173 149 AADLLKLVGNYVKNIRKVDISIQDIDVAMYADKALLELF 187 (1108)
Q Consensus 149 ~~~vlelagn~~~~~~~~~itp~~i~~a~~~D~eL~~l~ 187 (1108)
+.++|+.|-+.|+..++..|+|+||.+|+-.+++...++
T Consensus 6 ~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~iL 44 (143)
T 1k6k_A 6 LELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREAL 44 (143)
T ss_dssp HHHHHHHHHHHHHHHTBSEECHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCchHHHHH
Confidence 357899999999999999999999999998887655555
No 164
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=22.14 E-value=1.2e+03 Score=28.77 Aligned_cols=91 Identities=18% Similarity=0.171 Sum_probs=58.5
Q ss_pred eeeeeeeEEEeCCCC--cceeEEEEeecCeEEEEecCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCc-cccc
Q psy17173 444 FYREDTLMKYDGKSN--RLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTD-DIKN 520 (1108)
Q Consensus 444 li~eG~L~k~~~~~~--~~~er~~FLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~-~~~~ 520 (1108)
.|+.|-|..-..+.- ..++.++.|-.+.|--.|-...+ . -|-.++++++.++|.+++- +-++
T Consensus 540 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~--~~~~~~~~~~~~~~~~~~~~~~~~ 604 (772)
T 3zvr_A 540 VIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEK-------------E--KKYMLSVDNLKLRDVEKGFMSSKH 604 (772)
T ss_dssp EEEEEEEEESSSCCC---CCEEEEEEESSEEEEESSTTCC-------------C--EEEEEECTTEEEEEC-------CE
T ss_pred ceeeeeeeecccccccCCCccceeeccccccccccchhhh-------------c--ccccccccccccchhhhccccccc
Confidence 677788775322110 11477888777777665543321 2 2335677999999988652 2367
Q ss_pred cEEeecCCCC-------eEEEEeCCHHHHHHHHHHH
Q psy17173 521 AFEIAPRDQP-------SIIIVTKSPEDKKSWFSDL 549 (1108)
Q Consensus 521 aF~I~~~~~~-------~~~l~a~s~eeK~~Wm~~L 549 (1108)
.|.|.+.+++ .+-+.|.|.+++..|.+.+
T Consensus 605 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 640 (772)
T 3zvr_A 605 IFALFNTEQRNVYKDYRQLELACETQEEVDSWKASF 640 (772)
T ss_dssp EEEEEETTSSCSBTTBSEEEEEESSHHHHHHHHHHH
T ss_pred cccccCCccccccchhhhhhhhccccccchhhHHhh
Confidence 8888866543 6899999999999998866
No 165
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=21.23 E-value=50 Score=31.42 Aligned_cols=32 Identities=9% Similarity=-0.090 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhcCcccccccchhhHHhcCh
Q psy17173 150 ADLLKLVGNYVKNIRKVDISIQDIDVAMYADK 181 (1108)
Q Consensus 150 ~~vlelagn~~~~~~~~~itp~~i~~a~~~D~ 181 (1108)
.++|+.|-+.|+..++..|+|+||.+|+-.++
T Consensus 11 ~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~ 42 (148)
T 1khy_A 11 QLALADAQSLALGHDNQFIEPLHLMSALLNQE 42 (148)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHcCCCccCHHHHHHHHHcCC
Confidence 57899999999999999999999999987653
No 166
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=20.21 E-value=37 Score=32.54 Aligned_cols=32 Identities=13% Similarity=0.149 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhcCcccccccchhhHHhcC
Q psy17173 149 AADLLKLVGNYVKNIRKVDISIQDIDVAMYAD 180 (1108)
Q Consensus 149 ~~~vlelagn~~~~~~~~~itp~~i~~a~~~D 180 (1108)
+.++|+.|-+.|+..++..|+|+||.+|+-.+
T Consensus 12 a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~ 43 (145)
T 3fes_A 12 AKKAIDLAFESAKSLGHNIVGSEHILLGLLRE 43 (145)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhC
Confidence 35789999999999999999999999998764
Done!