RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17173
(1108 letters)
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease
mutation, guanine-nucleotide releasing factor, signaling
protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Length = 1049
Score = 817 bits (2111), Expect = 0.0
Identities = 470/1050 (44%), Positives = 677/1050 (64%), Gaps = 31/1050 (2%)
Query: 18 DFHEAYNENRWKGTLVSSLHSILKQVHNSLDINTDALYYTEKLILKLLNLLCSKPLPLTT 77
+F N +W+G LV +L + QVH +L+ N DAL Y E+LIL+LLN+LC P +
Sbjct: 9 EFFSEENAPKWRGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNMLCQ-AQPRSA 67
Query: 78 SDMEGKIKKYFPNPISEWTFNEAKQALEKGKKKSSLVISIDRVQNILQKEFYFRKVETNM 137
SD+E +++K FP+PI +W +A+ A+EK K+++ L + ++++ +L KE K++ +
Sbjct: 68 SDVEERVQKSFPHPIDKWAIADAQSAIEKRKRRNPLSLPVEKIHPLL-KEVLGYKIDHQV 126
Query: 138 VLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMYADKALLELFFQEDDD--PV 195
+Y AVL+Y++AD+LKLVGNYV+NIR +I+ QDI VAM ADK L+++F Q+ +D +
Sbjct: 127 SVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCADKVLMDMFHQDVEDINIL 186
Query: 196 YLEPQVQSNNVVLHYEQVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLF 255
L + S + Y +V F+AE + +IREL LI+K+F E + L +V ++F
Sbjct: 187 SLTDEEPSTSGEQTYYDLVKAFMAEIRQYIRELNLIIKVFREPFVSNSKLFSANDVENIF 246
Query: 256 EIIEEIYNLTVCLLGAVEDISEMSSDD---HCIGSCFEEFAEDAEFDVYEKLLHNIVNQK 312
I +I+ L+V LLG +ED EM+ + +GSCFE+ AE+ FD YE +I+
Sbjct: 247 SRIVDIHELSVKLLGHIEDTVEMTDEGSPHPLVGSCFEDLAEELAFDPYESYARDILRPG 306
Query: 313 SIEVLSMHVTQPSILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYIKIFHSLTDS 372
+ +++P LQ G GFKE V+Y LP LL++P+YHC YFE +K ++
Sbjct: 307 FHDRFLSQLSKPGAALYLQSIGEGFKEAVQYVLPRLLLAPVYHCLHYFELLKQLEEKSED 366
Query: 373 SKDKECLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQ------SLEKIHELK 426
+DKECL+QA L +Q + KI + K + R Q +++K++E++
Sbjct: 367 QEDKECLKQAITALLNVQSGMEKICSKSLAKRRLSESACRFYSQQMKGKQLAIKKMNEIQ 426
Query: 427 KNVDGVDVRDLRPYLEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVP 486
KN+DG + +D+ EF E TL + K ER ++ FDG++I CKSN
Sbjct: 427 KNIDGWEGKDIGQCCNEFIMEGTLTRVGAK----HERHIFLFDGLMICCKSNHGQPRLPG 482
Query: 487 INVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWF 546
+S E++ KE +F+RKV+IND ++T++ K+AFEI +D+ S+I KS E+K +W
Sbjct: 483 ----ASNAEYRLKEKFFMRKVQINDKDDTNEYKHAFEIILKDENSVIFSAKSAEEKNNWM 538
Query: 547 SDLIMVNTKSMLERTLDSIILDEEKKHPLRMPSPEYYSFAEPDSCENIILEEKQNTNM-- 604
+ LI + +S LER LD +L EEK+ +R+PS + Y FAEPDS ENII EE
Sbjct: 539 AALISLQYRSTLERMLDVTMLQEEKEEQMRLPSADVYRFAEPDSEENIIFEENMQPKAGI 598
Query: 605 PLIKGATLHKLIERLTYHIYADPAFIGTFLTTYRSFTTPTELLDLLIDRFNV-PDPNKVF 663
P+IK T+ KLIERLTYH+YADP F+ TFLTTYRSF P ELL L+I+RF +
Sbjct: 599 PIIKAGTVIKLIERLTYHMYADPNFVRTFLTTYRSFCKPQELLSLIIERFEIPEPEPTEA 658
Query: 664 ENNNADIEESILREDIIRYKKELCQPVQFRVLNVFRQWVQHHFYDFQRDQNLLEKLKSFL 723
+ + + L ++ R++KE QPVQ RVLNV R WV+HHFYDF+RD LL++++ F+
Sbjct: 659 DRIAIENGDQPLSAELKRFRKEYIQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFI 718
Query: 724 LNEISGKSLRKWADIVLNLIQRKEL--DLEKEITFAFNNSPPPIEVHVPINS-IDEFNIL 780
+ GK+++KW + + +IQRK++ D F +SPP +E H+ I+ F++L
Sbjct: 719 -GTVRGKAMKKWVESITKIIQRKKIARDNGPGHNITFQSSPPTVEWHISRPGHIETFDLL 777
Query: 781 IAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHTTNFTRWLEK 840
HP+EIARQLTLLE D +R+V+PSELVGSVWTK++K SPNL+K+++HTTN T W EK
Sbjct: 778 TLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEK 837
Query: 841 IIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRL 900
IVE EN +ER+A+++RIIE++ V Q+LNNFNGVL V SAM S+ VYRL TF+ +P+R
Sbjct: 838 CIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQ 897
Query: 901 QKVLEDARELNGDHFKKYQEKLRNINPPCIPFFGMYLTNILHIEEGNPDFLPDS--KLIN 958
+K+LE+A EL+ DH+KKY KLR+INPPC+PFFG+YLTNIL EEGNP+ L +LIN
Sbjct: 898 KKILEEAHELSEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELIN 957
Query: 959 FTKRRKVAEIISEIQQYQNEPYCLSVVPIYREFFENLSPFEGIDDNEMCNILFEQSLLIE 1018
F+KRRKVAEI EIQQYQN+PYCL V + FFENL+P + E + LF +SL IE
Sbjct: 958 FSKRRKVAEITGEIQQYQNQPYCLRVESDIKRFFENLNPMGNSMEKEFTDYLFNKSLEIE 1017
Query: 1019 PRHATHVPKFPRKWPNISLKSPLVKIKKTR 1048
PR+ +P+FP+K+ LKSP V+ R
Sbjct: 1018 PRNPKPLPRFPKKYS-YPLKSPGVRPSNPR 1046
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo
sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S*
1nvw_S* 1nvx_S* 1bkd_S
Length = 490
Score = 427 bits (1098), Expect = e-139
Identities = 252/486 (51%), Positives = 338/486 (69%), Gaps = 10/486 (2%)
Query: 571 KKHPLRMPSPEYYSFAEPDSCENIILEEKQNT--NMPLIKGATLHKLIERLTYHIYADPA 628
+ +R+PS + Y FAEPDS ENII EE +P+IK T+ KLIERLTYH+YADP
Sbjct: 4 AEEQMRLPSADVYRFAEPDSEENIIFEENMQPKAGIPIIKAGTVIKLIERLTYHMYADPN 63
Query: 629 FIGTFLTTYRSFTTPTELLDLLIDRFNVPD-PNKVFENNNADIEESILREDIIRYKKELC 687
F+ TFLTTYRSF P ELL L+I+RF +P+ + + + L ++ R++KE
Sbjct: 64 FVRTFLTTYRSFCKPQELLSLIIERFEIPEPEPTEADRIAIENGDQPLSAELKRFRKEYI 123
Query: 688 QPVQFRVLNVFRQWVQHHFYDFQRDQNLLEKLKSFLLNEISGKSLRKWADIVLNLIQRKE 747
QPVQ RVLNV R WV+HHFYDF+RD LL++++ F+ + GK+++KW + + +IQRK+
Sbjct: 124 QPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFI-GTVRGKAMKKWVESITKIIQRKK 182
Query: 748 LDLEKEITFAFNNSPPPIEVHVPIN---SIDEFNILIAHPVEIARQLTLLEFDYFRSVKP 804
+ + P V I+ I+ F++L HP+EIARQLTLLE D +R+V+P
Sbjct: 183 IARDNGPGHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESDLYRAVQP 242
Query: 805 SELVGSVWTKKNKAEYSPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMTRIIEMMIV 864
SELVGSVWTK++K SPNL+K+++HTTN T W EK IVE EN +ER+A+++RIIE++ V
Sbjct: 243 SELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQV 302
Query: 865 LQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDARELNGDHFKKYQEKLRN 924
Q+LNNFNGVL V SAM S+ VYRL TF+ +P+R +K+LE+A EL+ DH+KKY KLR+
Sbjct: 303 FQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSEDHYKKYLAKLRS 362
Query: 925 INPPCIPFFGMYLTNILHIEEGNPDFLPDS--KLINFTKRRKVAEIISEIQQYQNEPYCL 982
INPPC+PFFG+YLTNIL EEGNP+ L +LINF+KRRKVAEI EIQQYQN+PYCL
Sbjct: 363 INPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQNQPYCL 422
Query: 983 SVVPIYREFFENLSPFEGIDDNEMCNILFEQSLLIEPRHATHVPKFPRKWPNISLKSPLV 1042
V + FFENL+P + E + LF +SL IEPR+ +P+FP+K+ LKSP V
Sbjct: 423 RVESDIKRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRNPKPLPRFPKKYS-YPLKSPGV 481
Query: 1043 KIKKTR 1048
+ R
Sbjct: 482 RPSNPR 487
>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS
guanine nucleotide releasing FACT specific nucleotide
exchange factor; 2.20A {Mus musculus}
Length = 240
Score = 276 bits (707), Expect = 1e-85
Identities = 80/243 (32%), Positives = 140/243 (57%), Gaps = 9/243 (3%)
Query: 783 HPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHTTNFTRWLEKII 842
+EIA QLTLL+ F+S+ E G W K K E +P ++K KH + + ++ I
Sbjct: 5 SALEIAEQLTLLDHLVFKSIPYEEFFGQGWMKAEKYERTPYIMKTTKHFNHVSNFIASEI 64
Query: 843 VEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQK 902
+ E+ R + + + + + + + L+N+N VL +TS++ +A++RL+ T+ + + +
Sbjct: 65 IRNEDISARASAIEKWVAVADICRCLHNYNAVLEITSSINRSAIFRLKKTWLKVSKQTKS 124
Query: 903 VLEDAREL--NGDHFKKYQEKLRNINPPCIPFFGMYLTNILHIEEGNPDFLPDSKLINFT 960
+L+ ++L + FK +E LRN +PPC+P+ GMYLT+++ IEEG P++ D L+NF+
Sbjct: 125 LLDKLQKLVSSDGRFKNLRESLRNCDPPCVPYLGMYLTDLVFIEEGTPNYTED-GLVNFS 183
Query: 961 KRRKVAEIISEIQQYQNEPYCLSVVPIYREFFENLSPFEGIDDNEMCNILFEQSLLIEPR 1020
K R ++ II EI+Q+Q Y + P ++ + S + L+E SLLIEP+
Sbjct: 184 KMRMISHIIREIRQFQQTTYKIDPQPKVIQYLLDESFMLDEES------LYESSLLIEPK 237
Query: 1021 HAT 1023
T
Sbjct: 238 LPT 240
>3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain
homology, guanine-nucleotide exchange factor, S GTPase
RAL subfamily; 2.24A {Homo sapiens}
Length = 271
Score = 266 bits (682), Expect = 1e-81
Identities = 63/248 (25%), Positives = 129/248 (52%), Gaps = 8/248 (3%)
Query: 777 FNILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHTTNFTR 836
F++L P E A Q+TL++ F++++P EL W+KK K +PN++ + +
Sbjct: 26 FDVLKVTPEEFASQITLMDIPVFKAIQPEELASCGWSKKEKHSLAPNVVAFTRRFNQVSF 85
Query: 837 WLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQAL 896
W+ + I+ A+ R I++ +++ L +LNN + +++V SA+ SA ++RL T+ L
Sbjct: 86 WVVREILTAQTLKIRAEILSHFVKIAKKLLELNNLHSLMSVVSALQSAPIFRLTKTWALL 145
Query: 897 PTRLQKVLEDAREL--NGDHFKKYQEKLRNIN-PPCIPFFGMYLTNILHIEEGNPDFLPD 953
+ + E L D++K+ +E +R++ P IP+ G+YL ++++I+ P
Sbjct: 146 NRKDKTTFEKLDYLMSKEDNYKRTREYIRSLKMVPSIPYLGIYLLDLIYIDSAYPAS--G 203
Query: 954 SKLINFTKRRKVAEIISEIQQYQN--EPYCLSVVPIYREFFENLSPFEGIDDNEMCNILF 1011
S + N + ++ I+ I Q L+ +P +++ +++ E + + +
Sbjct: 204 SIMENEQRSNQMNNILRIIADLQVSCSYDHLTTLPHVQKYLKSVRYIEELQKFVE-DDNY 262
Query: 1012 EQSLLIEP 1019
+ SL IEP
Sbjct: 263 KLSLRIEP 270
>2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP,
cyclic nucleotide, regulation, auto-inhibition, CDC25
homology domain; 2.7A {Mus musculus}
Length = 999
Score = 266 bits (680), Expect = 1e-74
Identities = 79/484 (16%), Positives = 174/484 (35%), Gaps = 47/484 (9%)
Query: 573 HPLRMPSPE-------YYSFAEPDSCENIILEEKQNTNMPLIKGATLHKLIERLTYHIYA 625
H + MP+ + +Y E ++ N +I+ + + +
Sbjct: 525 HCVFMPNTQLCPALVAHYHAQPSQGTEQERMDYALNNKRRVIR--LVLQWAAMYGDLLQE 582
Query: 626 DPAFIGTFLTTYRSFTTPTELLDLLIDRFNVPDPNKVFENNNADIEE-----SILREDII 680
D + Y S + ++ ++ + + +A + + + +
Sbjct: 583 DDVAMAFLEEFYVSVSDDARMMAAFKEQLPELEKIVKQISEDAKAPQKKHKVLLQQFNTG 642
Query: 681 RYKKELCQPVQFRVLNVFRQWVQHHFYDFQRD----------QNLLEKLKS------FLL 724
+ + QP++ +F+ + H Y R + +KL S +
Sbjct: 643 DERAQKRQPIRGSDEVLFKVYCIDHTYTTIRVPVAASVKEVISAVADKLGSGEGLIIVKM 702
Query: 725 NEISGKSLRKWADIVLNLIQRKELDLEKEITFAFNNSPPPIEVHVPINSIDEFNILIAHP 784
N K + K D+ + L F++ P E P +
Sbjct: 703 NSGGEKVVLKSNDVSVFTTLTINGRLFACPREQFDSLTPLPEQEGPTTG-TVGTFELMSS 761
Query: 785 VEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHTTNFTRWLEKIIVE 844
++A Q+T +++ F V EL+ + + N + + NL ++ W+ +
Sbjct: 762 KDLAYQMTTYDWELFNCVHELELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCL 821
Query: 845 AENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVL 904
+R+ ++ + I++ ++ N N A+ + + AV RL T++ LP++ +K
Sbjct: 822 CSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFY 881
Query: 905 EDAREL--NGDHFKKYQEKLRNINPPCIPFFGMYLTNILHIEEGNPDFLPDSKLINFTKR 962
+ L + + Y+ + PP IPF + + ++ EGN F+ L+NF K
Sbjct: 882 AEFESLMDPSRNHRAYRLTAAKLEPPLIPFMPLLIKDMTFTHEGNKTFI--DNLVNFEKM 939
Query: 963 RKVAEIISEIQQYQNEPYCLSVVPIY------REFFENLSPFEGIDDNEMCNILFEQSLL 1016
R +A ++ Y+++P+ R + L+ + L + S
Sbjct: 940 RMIANTARTVRYYRSQPFNPDAAQANKNHQDVRSYVRQLNVIDNQRT------LSQMSHR 993
Query: 1017 IEPR 1020
+EPR
Sbjct: 994 LEPR 997
Score = 61.8 bits (149), Expect = 1e-09
Identities = 28/192 (14%), Positives = 58/192 (30%), Gaps = 46/192 (23%)
Query: 563 DSIILDEEKKHPLRMPSPEYYSFAEPDSCENIILEEKQNTNMPL---------------- 606
SI+L E+ H LR+ ++ + L+E + L
Sbjct: 422 ASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLKEHDQDVLVLEKVPAGNRAANQGNSQ 481
Query: 607 ------IKGATLHKLIERLTYHIY-------ADPAFIGTFLTTYRSFTTPTELLDLLIDR 653
+ T K++E I A + + F+ + F T+L L+
Sbjct: 482 PQQKYTVMSGTPEKILEHFLETIRLEPSLNEATDSVLNDFVMMHCVFMPNTQLCPALVAH 541
Query: 654 FNVPDPNKVFENNNADIEESILREDIIRYKKELCQPVQFRVLNVFRQWVQHHFYDFQRDQ 713
++ + + + + RV+ + QW + Q D
Sbjct: 542 YHAQPSQGTEQE-----------------RMDYALNNKRRVIRLVLQWAAMYGDLLQEDD 584
Query: 714 NLLEKLKSFLLN 725
+ L+ F ++
Sbjct: 585 VAMAFLEEFYVS 596
Score = 31.7 bits (71), Expect = 1.9
Identities = 33/190 (17%), Positives = 62/190 (32%), Gaps = 23/190 (12%)
Query: 566 ILDEEKKHPLRMPSPEYYSFAEPDSCENIILEEKQNTNMPLIKGATLHKLIERLTYHIYA 625
+ ++ +++ + +P Y + + I +E + L G L I H+
Sbjct: 152 LWEKYRQYMAGLLAPPYGVMETGSNNDRIPDKENVPSEKILRAGKILRIAILSRAPHMIR 211
Query: 626 DPAFIGTFLTTYRSFTTPTELLD-LLIDRFNVPDPNKVFENNNADIEESILREDIIRYKK 684
D + L TYR TEL+D ++ V + +E+ +L
Sbjct: 212 DRKY---HLKTYRQCCVGTELVDWMIQQTSCVHSRTQAVGMWQVLLEDGVLN-------- 260
Query: 685 ELCQPVQFRVLNVFRQWVQHHFYDFQRDQNLLEKLKSFLLNEISGKSLRKWADIVLNLIQ 744
V ++ FY F D+ L + E + + D +L L Q
Sbjct: 261 --------HVDQERHFQDKYLFYRFLDDEREDAPLPT---EEEKKECDEELQDTMLLLSQ 309
Query: 745 RKELDLEKEI 754
+ I
Sbjct: 310 MGPDAHMRMI 319
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP,
SP-camps, GEF, gunanine nucleotide exchange factor,
G-protein, GTP-binding, nucleotide-binding; HET: SP1;
2.20A {Mus musculus}
Length = 694
Score = 259 bits (662), Expect = 4e-74
Identities = 77/552 (13%), Positives = 192/552 (34%), Gaps = 48/552 (8%)
Query: 513 ENTDDIKNAFEIAP--RDQPSIIIVTKSPEDKKSWFSDLIMVNTKSMLERTLDSIILDEE 570
NT +K + P+ + ++ + +LE L++I L+
Sbjct: 145 ANTVRLKEHDQDVLVLEKVPAGNRAANQGNSQPQQKYTVMSGTPEKILEHFLETIRLEPS 204
Query: 571 KK-------------HPLRMPSPE-------YYSFAEPDSCENIILEEKQNTNMPLIKGA 610
H + MP+ + +Y E ++ N +I+
Sbjct: 205 LNEATDSVLNDFVMMHCVFMPNTQLCPALVAHYHAQPSQGTEQERMDYALNNKRRVIR-- 262
Query: 611 TLHKLIERLTYHIYADPAFIGTFLTTYRSFTTPTELLDLLIDRFNVPDPNKVFENNNADI 670
+ + + D + Y S + ++ ++ + + +A
Sbjct: 263 LVLQWAAMYGDLLQEDDVAMAFLEEFYVSVSDDARMMAAFKEQLPELEKIVKQISEDAKA 322
Query: 671 EESILREDIIRYKKELCQP-----VQFRVLNVFRQWVQHHFYDFQRD--QNLLEKLKSFL 723
+ + + ++ + ++ +F+ + H Y R ++++ S +
Sbjct: 323 PQKKHKVLLQQFNTGDERAQKRQPIRGSDEVLFKVYCIDHTYTTIRVPVAASVKEVISAV 382
Query: 724 LNEISGKSLRKWADIVLNLIQR----------KELDLEKEITFAFN---NSPPPIEVHVP 770
+++ + + L + + +S P+
Sbjct: 383 ADKLGSGEGLIIVKMNSGGEKVVLKSNDVSVFTTLTINGRLFACPREQFDSLTPLPEQEG 442
Query: 771 INSIDEFNILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKH 830
+ + ++A Q+T +++ F V EL+ + + N + + NL ++
Sbjct: 443 PTTGTVGTFELMSSKDLAYQMTTYDWELFNCVHELELIYHTFGRHNFKKTTANLDLFLRR 502
Query: 831 TTNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLR 890
W+ + +R+ ++ + I++ ++ N N A+ + + AV RL
Sbjct: 503 FNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMGLSNVAVSRLA 562
Query: 891 FTFQALPTRLQKVLEDAREL--NGDHFKKYQEKLRNINPPCIPFFGMYLTNILHIEEGNP 948
T++ LP++ +K + L + + Y+ + PP IPF + + ++ EGN
Sbjct: 563 LTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAAKLEPPLIPFMPLLIKDMTFTHEGNK 622
Query: 949 DFLPDSKLINFTKRRKVAEIISEIQQYQNEPYCLSVVPIYREFFENLSPFEGIDDNEMCN 1008
F+ L+NF K R +A ++ Y+++P+ + + S ++ +
Sbjct: 623 TFID--NLVNFEKMRMIANTARTVRYYRSQPFNPDAAQANKNHQDVRSYVRQLNVIDNQR 680
Query: 1009 ILFEQSLLIEPR 1020
L + S +EPR
Sbjct: 681 TLSQMSHRLEPR 692
Score = 69.5 bits (169), Expect = 4e-12
Identities = 33/297 (11%), Positives = 79/297 (26%), Gaps = 50/297 (16%)
Query: 564 SIILDEEKKHPLRMPSPEYYSFAEPDSCENIILEE----------------------KQN 601
SI+L E+ H LR+ ++ + L+E Q
Sbjct: 118 SIVLREDNCHFLRVDKEDFNRILRDVEANTVRLKEHDQDVLVLEKVPAGNRAANQGNSQP 177
Query: 602 TNMPLIKGATLHKLIERLTYHIY-------ADPAFIGTFLTTYRSFTTPTELLDLLIDRF 654
+ T K++E I A + + F+ + F T+L L+ +
Sbjct: 178 QQKYTVMSGTPEKILEHFLETIRLEPSLNEATDSVLNDFVMMHCVFMPNTQLCPALVAHY 237
Query: 655 NVPDPNKVFENNNADIEESILREDIIRYKKELCQPVQFRVLNVFRQWVQHHFYDFQRDQN 714
+ + + + + + RV+ + QW + Q D
Sbjct: 238 HAQPS-----------------QGTEQERMDYALNNKRRVIRLVLQWAAMYGDLLQEDDV 280
Query: 715 LLEKLKSFLLN----EISGKSLRKWADIVLNLIQRKELDLEKEITFAFNNSPPPIEVHVP 770
+ L+ F ++ + ++ + ++++ D +
Sbjct: 281 AMAFLEEFYVSVSDDARMMAAFKEQLPELEKIVKQISEDAKAPQKKHKVLLQQFNTGDER 340
Query: 771 INSIDEFNILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKI 827
++ + V S K + ++K+
Sbjct: 341 AQKRQPIRGSDEVLFKVYCIDHTYTTIRVPVAASVKEVISAVADKLGSGEGLIIVKM 397
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene
regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 1pms_A 1awe_A
Length = 354
Score = 212 bits (540), Expect = 4e-61
Identities = 130/359 (36%), Positives = 202/359 (56%), Gaps = 17/359 (4%)
Query: 210 YEQVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCLL 269
Y +V F+AE + +IREL LI+K+F E + L +V ++F I +I+ L+V LL
Sbjct: 4 YYDLVKAFMAEIRQYIRELNLIIKVFREPFVSNSKLFSANDVENIFSRIVDIHELSVKLL 63
Query: 270 GAVEDISEMS---SDDHCIGSCFEEFAEDAEFDVYEKLLHNIVNQKSIEVLSMHVTQPSI 326
G +ED EM+ S +GSCFE+ AE+ FD YE +I+ + +++P
Sbjct: 64 GHIEDTVEMTDEGSPHPLVGSCFEDLAEELAFDPYESYARDILRPGFHDRFLSQLSKPGA 123
Query: 327 LNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYIKIFHSLTDSSKDKECLEQAQGLL 386
LQ G GFKE V+Y LP LL++P+YHC YFE +K ++ +DKECL+QA L
Sbjct: 124 ALYLQSIGEGFKEAVQYVLPRLLLAPVYHCLHYFELLKQLEEKSEDQEDKECLKQAITAL 183
Query: 387 APLQISLSKISLEKNGKNACVRNYNRV------KHLQSLEKIHELKKNVDGVDVRDLRPY 440
+Q + KI + K + R +++K++E++KN+DG + +D+
Sbjct: 184 LNVQSGMEKICSKSLAKRRLSESACRFYSQQMKGKQLAIKKMNEIQKNIDGWEGKDIGQC 243
Query: 441 LEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKE 500
EF E TL + K ER ++ FDG++I CKSN P +S E++ KE
Sbjct: 244 CNEFIMEGTLTRVGAKH----ERHIFLFDGLMICCKSNHGQ----PRLPGASNAEYRLKE 295
Query: 501 MYFLRKVEINDYENTDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVNTKSMLE 559
+F+RKV+IND ++T++ K+AFEI +D+ S+I KS E+K +W + LI + +S LE
Sbjct: 296 KFFMRKVQINDKDDTNEYKHAFEIILKDENSVIFSAKSAEEKNNWMAALISLQYRSTLE 354
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus
norvegicus} SCOP: a.87.1.1 b.55.1.1
Length = 402
Score = 134 bits (338), Expect = 8e-34
Identities = 65/394 (16%), Positives = 142/394 (36%), Gaps = 41/394 (10%)
Query: 189 QEDDDPVYLEPQVQSNNVVLHYEQVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEI 248
D + L N V+N+ ++ E+ +I+ LK I + + ++ K +
Sbjct: 21 HLDPNSDCLCLGRPLQNRDQMRANVINEIMSTERHYIKHLKDICEGYLKQCRKRRDMFSD 80
Query: 249 KEVHSLFEIIEEIYNLTVCLLGAVED-ISEMSSDDHCIGSCFEEFAEDAEFDVYEKLLHN 307
+++ +F IE+IY + + +E + IG CF E + F +Y + +N
Sbjct: 81 EQLKVIFGNIEDIYRFQMGFVRDLEKQYNNDDPHLSEIGPCFLEHQD--GFWIYSEYCNN 138
Query: 308 IVNQKSIEVLSMHVTQPSILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYIK-IF 366
+ LS + + + A ++ + + L++P+ Y + +
Sbjct: 139 H--LDACMELSKLMKDSRYQHFFE-ACRLLQQMIDIAIDGFLLTPVQKICKYPLQLAELL 195
Query: 367 HSLTDSSKDKECLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELK 426
D + A L+ + +N + R + L++++KI + +
Sbjct: 196 KYTAQDHSDYRYVAAA----------LAVM------RNVTQQINERKRRLENIDKIAQWQ 239
Query: 427 KNVDGVDVRDLRPYLEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVP 486
+V + D+ E + R +R + FD ++LCK
Sbjct: 240 ASVLDWEGDDILDRSSELIYTGEMAWIYQPYGRNQQRVFFLFDHQMVLCK---------K 290
Query: 487 INVVSSQYEFKCKEMYFLRKVEINDYENTDD------IKNAFEIAPRDQPSIIIV-TKSP 539
+ + K + K E+ D E+ D +KNAF++ ++ + + K
Sbjct: 291 DLIRRDILYY--KGRIDMDKYEVIDIEDGRDDDFNVSMKNAFKLHNKETEEVHLFFAKKL 348
Query: 540 EDKKSWFSDLIMVNTKSMLERTLDSIILDEEKKH 573
E+K W + + I + +K+
Sbjct: 349 EEKIRWLRAFREERKMVQEDEKIGFEISENQKRQ 382
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 118 bits (296), Expect = 5e-28
Identities = 72/378 (19%), Positives = 144/378 (38%), Gaps = 42/378 (11%)
Query: 210 YEQVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCLL 269
V+N+ ++ E+ +I+ L+ I + + + K + +++ ++F IE+IY +
Sbjct: 119 RTNVINEILSTERDYIKHLRDICEGYVRQCRKRADMFSEEQLRTIFGNIEDIYRCQKAFV 178
Query: 270 GAVED-ISEMSSDDHCIGSCFEEFAEDAEFDVYEKLLHNIVNQKSIEVLSMHVTQPSILN 328
A+E + +G+CF E D F +Y + +N + LS +
Sbjct: 179 KALEQRFNRERPHLSELGACFLEHQAD--FQIYSEYCNNH--PNACVELSRLTKLSKYVY 234
Query: 329 TLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYIK-IFHSLTDSSKDKECLEQAQGLLA 387
+ A ++ + L L++P+ Y + + +D + +E A
Sbjct: 235 FFE-ACRLLQKMIDISLDGFLLTPVQKICKYPLQLAELLKYTHPQHRDFKDVEAA----- 288
Query: 388 PLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKNVDGVDVRDLRPYLEEFYRE 447
L + KN R + L++++KI + + +++ + DL E
Sbjct: 289 -----LHAM------KNVAQLINERKRRLENIDKIAQWQSSIEDWEGEDLLVRSSELIYS 337
Query: 448 DTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKV 507
L + + +R + FD LI CK + + K + +
Sbjct: 338 GELTRVTQPQAKSQQRMFFLFDHQLIYCK---------KDLLRRDVLYY--KGRLDMDGL 386
Query: 508 EINDYENTDD------IKNAFEIAPRDQP-SIIIVTKSPEDKKSWFSDLIMVNTKSMLER 560
E+ D E+ D IKNAF + S ++ T+ PE K+ W + L++
Sbjct: 387 EVVDLEDGKDRDLHVSIKNAFRLHRGATGDSHLLCTRKPEQKQRWLKAFAREREQVQLDQ 446
Query: 561 -TLDSIILDEEKKHPLRM 577
T SI + K+ L
Sbjct: 447 ETGFSITELQRKQAMLNA 464
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 107 bits (268), Expect = 4e-24
Identities = 64/413 (15%), Positives = 131/413 (31%), Gaps = 67/413 (16%)
Query: 190 EDDDPVYLEPQVQSNNVVLHYEQVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIK 249
ED + + E+ + L I + F + L + ++I+
Sbjct: 178 EDLMRSEPVSMPPKMTEYDKRCCCLREIQQTEEKYTDTLGSIQQHFLKPLQRFLKPQDIE 237
Query: 250 EVHSLFEIIEEIYNLTVCLLGAVEDISEMSSDDHCIGSCFEEFAEDAEFDVYEKLLHNIV 309
+F IE++ + L +++ + + F ++ E F VY + +
Sbjct: 238 ---IIFINIEDLLRVHTHFLKEMKEALGTPGAAN-LYQVFIKYKER--FLVYGRYCSQV- 290
Query: 310 NQKSIEVLSMHVTQPSILNTLQFAGYGFKECVKYYLPNLLMSPL-----YHCNLYFEYIK 364
+ + + L + ++ L +LLM P+ YH L E +K
Sbjct: 291 -ESASKHLDRVAAAREDVQMKLEECSQRANNGRFTLRDLLMVPMQRVLKYHLLLQ-ELVK 348
Query: 365 IFHSLTDSSKDKECLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHE 424
T + +KE L A L ++ + N R ++L +I
Sbjct: 349 ----HTQEAMEKENLRLA---LDAMRDLAQCV-------NEVKR------DNETLRQITN 388
Query: 425 LKKNVDGVDVRDLRPYLEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVT 484
+ +++ +D L Y + L + +R + D L++CK
Sbjct: 389 FQLSIENLDQ-SLAHY-GRPKIDGELKITSVERRSKMDRYAFLLDKALLICKRRGD---- 442
Query: 485 VPINVVSSQYEFKCKEMYFLRKVEINDYENTDD----IKNAFEI-APRDQPSIIIVTKSP 539
+ K+ L ++ D + D + F + + + K+
Sbjct: 443 ----------SYDLKDFVNLHSFQVRDDSSGDRDNKKWSHMFLLIEDQGAQGYELFFKTR 492
Query: 540 EDKKSWFSDLIMVNTKSMLERTLDSIILDEEKKHPLRMPSPEYYSFAEPDSCE 592
E KK W E + +I + + +SF E SC+
Sbjct: 493 ELKKKWMEQ---------FEMAISNI---YPENATANGHDFQMFSFEETTSCK 533
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding,
metal-binding, phosphoprotein, exchange factor, RAC,
GTPase, membrane domain; 1.85A {Mus musculus} PDB:
3bji_A 1f5x_A
Length = 406
Score = 102 bits (256), Expect = 3e-23
Identities = 65/412 (15%), Positives = 132/412 (32%), Gaps = 67/412 (16%)
Query: 190 EDDDPVYLEPQVQSNNVVLHYEQVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIK 249
ED + P + + E+ + L I + F + L + ++++
Sbjct: 6 EDLMRLESVPTPPKMTEYDKRCCCLREIQQTEEKYTDTLGSIQQHFMKPLQRFLKPQDME 65
Query: 250 EVHSLFEIIEEIYNLTVCLLGAVEDISEMSSDDHCIGSCFEEFAEDAEFDVYEKLLHNIV 309
++F IEE++++ L ++D + F ++ E F VY + +
Sbjct: 66 ---TIFVNIEELFSVHTHFLKELKDALAG-PGATTLYQVFIKYKER--FLVYGRYCSQV- 118
Query: 310 NQKSIEVLSMHVTQPSILNTLQFAGYGFKECVKYYLPNLLMSPL-----YHCNLYFEYIK 364
+ + + L T + ++ L +LLM P+ YH L E +K
Sbjct: 119 -ESASKHLDQVATAREDVQMKLEECSQRANNGRFTLRDLLMVPMQRVLKYHLLLQ-ELVK 176
Query: 365 IFHSLTDSSKDKECLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHE 424
T + +KE L A L ++ + N R ++L +I
Sbjct: 177 ----HTQDATEKENLRLA---LDAMRDLAQCV-------NEVKR------DNETLRQITN 216
Query: 425 LKKNVDGVDVRDLRPYLEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVT 484
+ +++ +D + L + T+R + D L++CK
Sbjct: 217 FQLSIENLDQSLANYG--RPKIDGELKITSVERRSKTDRYAFLLDKALLICKRRGD---- 270
Query: 485 VPINVVSSQYEFKCKEMYFLRKVEINDYENTDD----IKNAFEIAPRDQP-SIIIVTKSP 539
+ K L ++ D + + + F + + K+
Sbjct: 271 ----------SYDLKASVNLHSFQVRDDSSGERDNKKWSHMFLLIEDQGAQGYELFFKTR 320
Query: 540 EDKKSWFSDLIMVNTKSMLERTLDSIILDEEKKHPLRMPSPEYYSFAEPDSC 591
E KK W E + +I + + +SF E SC
Sbjct: 321 ELKKKWMEQ---------FEMAISNI---YPENATANGHDFQMFSFEETTSC 360
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural
genomics consortium, DH domain, SGC, L binding protein;
2.80A {Homo sapiens}
Length = 434
Score = 96.2 bits (239), Expect = 6e-21
Identities = 55/393 (13%), Positives = 133/393 (33%), Gaps = 56/393 (14%)
Query: 211 EQVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIK--------EVHSLFEIIEEIY 262
+ + ++ EK ++ L+ + F+ + + + + E+ + I+
Sbjct: 24 LVIAQELLSSEKAYVEMLQHLNLDFHGAVMRALDDMDHEGRDTLAREELRQGLSELPAIH 83
Query: 263 NLTVCLLGAVEDISEMSSDDHCIGSCFEEFAEDAEFDVYEKLLHNIVNQKSIEVLSMHVT 322
+L +L +E+ + F + FD + + + + +LS +
Sbjct: 84 DLHQGILEELEERLSNWESQQKVADVFLAREQG--FDHHATHILQF--DRYLGLLSENCL 139
Query: 323 QPSILNTLQFAGYGFKECVKYYLPNLLMSPL-----YHCNLYFEYIKIFHSLTDSSKDKE 377
L + + L+ + Y L +Y+ +L S + +
Sbjct: 140 HSPRLAAAVREFEQSVQGGSQTAKHRLLRVVQRLFQYQ-VLLTDYLN---NLCPDSAEYD 195
Query: 378 CLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKNVDGVDVRDL 437
+ A L+ + + N + ++L+K+ ++ +V G DL
Sbjct: 196 NTQGA---LSLISKVTDRA-------NDSMEQG------ENLQKLVHIEHSVRGQG--DL 237
Query: 438 RPYLEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFK 497
EF +E TLMK GK+ R R ++ + VL+ K ++
Sbjct: 238 LQPGREFLKEGTLMKVTGKNRR--PRHLFLMNDVLLYTYPQKDGK-------------YR 282
Query: 498 CKEMYFLRKVEINDYENTDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVNTKSM 557
K + ++++ + + A +I + +++ S ++ W+ L +
Sbjct: 283 LKNTLAVANMKVSRPVM-EKVPYALKIETSES-CLMLSASSCAERDEWYGCLSRALPEDY 340
Query: 558 LERTLDSIILDEEKKHPLRMPSPEYYSFAEPDS 590
+ L + E + L + E P +
Sbjct: 341 KAQALAAFHHSVEIRERLGVSLGERPPTLVPVT 373
>3t6a_A Breast cancer anti-estrogen resistance protein 3; CDC25-homology
domain, GTPase exchange factor, signaling Pro; HET: POG;
2.40A {Homo sapiens}
Length = 333
Score = 89.8 bits (222), Expect = 2e-19
Identities = 28/241 (11%), Positives = 68/241 (28%), Gaps = 29/241 (12%)
Query: 779 ILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEY------SPNLIKIMKHTT 832
P IA+ + ++ R + SE + + E + I++
Sbjct: 44 FTNNDPKVIAQHVLSMDCRVARILGVSEEMRRNMGVSSGLELITLPHGHQLRLDIIERHN 103
Query: 833 NFTRWL-EKIIVEAENFDERLAIMTRIIEMMIVL-QKLNNFNGVLAVTSAMGSAAVYRLR 890
+ I+ ++R A +++II++ + L + + A+ A+ + RL
Sbjct: 104 TMAIGIAVDILGCTGTLEDRAATLSKIIQVAVELKDSMGDLYSFSALMKALEMPQITRLE 163
Query: 891 FTFQALPTRLQKVLED----ARELNGDHFKKYQEKLRNINPPCIPFFGMYLTNILHIEEG 946
T+ AL + + + + + + N +P +T + E
Sbjct: 164 KTWTALRHQYTQTAILYEKQLKPFSKLLHEGRESTCVPPNNVSVPLLMPLVT----LMER 219
Query: 947 NPDFLPDSKL---------INFTKRRKVAEIISEIQQYQNEP----YCLSVVPIYREFFE 993
+ + I + Y+ E +
Sbjct: 220 QAVTFEGTDMWEKNDQSCEIMLNHLATARFMAEAADSYRMNAERILAGFQPDEEMNEICK 279
Query: 994 N 994
Sbjct: 280 T 280
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange
factor (GEF), small G-protein, signaling protein; 2.40A
{Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A
1kzg_A 1rj2_A
Length = 353
Score = 88.1 bits (218), Expect = 1e-18
Identities = 65/381 (17%), Positives = 131/381 (34%), Gaps = 48/381 (12%)
Query: 211 EQVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIK-----EVHSLFEIIEEIYNLT 265
V+N+ + E+ ++ EL +L+ + E++ I + + LF +EEIY+
Sbjct: 13 RHVMNELLDTERAYVEELLCVLEGYAAEMDNPLMAHLISTGLQNKKNILFGNMEEIYHFH 72
Query: 266 VCLLGAVEDISEMSSDDHCIGSCFEEFAEDAEFDVYEKLLHNIVNQKSIEVLSMHVTQPS 325
+ + +G CF E E+ F +YEK N +S + P
Sbjct: 73 NRIFLRELE--SCIDCPELVGRCFLERMEE--FQIYEKYCQNK--PRSESLWRQCSDCP- 125
Query: 326 ILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYIKIFHSLTDSSKDKECLEQAQGL 385
F K K L + L+ P+ Y +K + + E L++A
Sbjct: 126 -----FFQECQKKLDHKLSLDSYLLKPVQRITKYQLLLKEMLKYSKHCEGAEDLQEALS- 179
Query: 386 LAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKNVDGVDVRDLRPYLEEFY 445
S+ I N + + +L + +L + + +
Sbjct: 180 ------SILGILKAVNDSMHLIAITG---YDGNLGDLGKL--------LMQGSFSVWTDH 222
Query: 446 REDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLR 505
++ + + +R ++ + ++ C KK + Y + K+ +
Sbjct: 223 KKGHTKVKELARFKPMQRHLFLHEKAVLFC---KKREENGEGYEKAPSYSY--KQSLNMT 277
Query: 506 KVEINDYENTDDIKNAFEIAPRDQP-SIIIVTKSPEDKKSWFSDLIMVNTKSMLERTLDS 564
V I EN FEI + II +PE K +W + + + +L L +
Sbjct: 278 AVGIT--ENVKGDTKKFEIWYNAREEVYIIQAPTPEIKAAWVNAI-----RKVLTSQLQA 330
Query: 565 IILDEEKKHPLRMPSPEYYSF 585
+ + + S E++
Sbjct: 331 CREASQHRALEQSHSLEHHHH 351
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small
molecular weight G-protein, complex, protein-protein
complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Length = 354
Score = 82.6 bits (204), Expect = 7e-17
Identities = 46/373 (12%), Positives = 117/373 (31%), Gaps = 57/373 (15%)
Query: 211 EQVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIK-EVHSLFEIIEEIYNLTVCLL 269
V+++ V EK+++ +L I++ + + + ++ +F I++IY
Sbjct: 14 MYVLSELVETEKMYVDDLGQIVEGYMATMAAQGVPESLRGRDRIVFGNIQQIYEWHRDYF 73
Query: 270 GAVEDISEMSSDDHCIGSCFEEFAEDAEFDVYEKLLHNIVNQKSIEVLSMHVTQPSILNT 329
++++ D + F + +Y N KS V+S
Sbjct: 74 --LQELQRCLKDPDWLAQLFIKHERR--LHMYVVYCQNK--PKSEHVVSEFGDS------ 121
Query: 330 LQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYIK-IFHSLTDSSKDKECLEQAQGLLAP 388
F + + L +LL+ P+ Y +K + D LEQA ++
Sbjct: 122 -YFEELRQQLGHRLQLNDLLIKPVQRIMKYQLLLKDFLKYYNRAGMDTADLEQAVEVMCF 180
Query: 389 LQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKNVDGVDVRDLRPYLEEFYRED 448
+ R + +L ++ + + + +D
Sbjct: 181 VP--------------------KRCNDMMTLGRLRGFEGKLTA---------QGKLLGQD 211
Query: 449 TLMKYDGKSNRLT-----ERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYF 503
T + ++ L ER+V+ F+ ++I ++ +Q + K
Sbjct: 212 TFWVTEPEAGGLLSSRGRERRVFLFEQIIIFSEALGGGVRG------GTQPGYVYKNSIK 265
Query: 504 LRKVEINDYENTDDIKNAFEIAPRDQP--SIIIVTKSPEDKKSWFSDLIMVNTKSMLERT 561
+ + + D + A + ++ P ++W + +
Sbjct: 266 VSCLGLEGNLQGDPCRFALTSRGPEGGIQRYVLQAADPAISQAWIKHVAQILESQRDFLN 325
Query: 562 LDSIILDEEKKHP 574
++ +++
Sbjct: 326 ALQSPIEYQRRES 338
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO,
GTPase, guanine-nucleotide releas factor,
phosphorylation, signaling protein; 1.70A {Homo sapiens}
SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Length = 311
Score = 79.1 bits (195), Expect = 6e-16
Identities = 55/363 (15%), Positives = 126/363 (34%), Gaps = 74/363 (20%)
Query: 211 EQVVNDFVAEEKLFIRELKLILKIFYEEL---NKITPLKEIKEVHSLFEIIEEIYNLTVC 267
E ++ + + EK ++R+L+ + + E+ + P + + +F ++EIY
Sbjct: 11 EFIMAELIQTEKAYVRDLRECMDTYLWEMTSGVEEIPPGIVNKELIIFGNMQEIYEFHNN 70
Query: 268 LLGAVEDISEMSSDDHCIGSCFEEFAEDAEFDVYEKLLHNIVNQKSIEVLSMHVTQPSIL 327
+ ++++ + +G CF +A+ F +Y N S +++ H
Sbjct: 71 IF--LKELEKYEQLPEDVGHCFVTWADK--FQMYVTYCKNK--PDSTQLILEHAGS---- 120
Query: 328 NTLQFAGYGFKECVKYYLPNLLMSPL-----YHCNLYFEYIKIFHSLTDSSKDKECLEQA 382
F + + + + L+ P+ Y L E + + K+ LE
Sbjct: 121 ---YFDEIQQRHGLANSISSYLIKPVQRITKYQ-LLLKELLT--CCEEGKGEIKDGLEVM 174
Query: 383 QGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKNVDGVDVRDLRPYLE 442
+ R L + +N++
Sbjct: 175 LSVP------------------------KRANDAMHLSMLEGFDENIES---------QG 201
Query: 443 EFYREDTLMKYDGKS--NRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKE 500
E +++ +D K+ + ER ++ F+ L+ K + S + ++ K
Sbjct: 202 ELILQESFQVWDPKTLIRKGRERHLFLFEMSLVFSK---------EVKDSSGRSKYLYKS 252
Query: 501 MYFLRKVEINDYENTDDIKNAFEI--APRDQPSIIIVTKSPEDKKSWFSDLIMVNTKSML 558
F ++ + ++ D K A + P I++ S E+K+ W + + +
Sbjct: 253 KLFTSELGVTEHVEGDPCKFALWVGRTPTSDNKIVLKASSIENKQDWIKHI----REVIQ 308
Query: 559 ERT 561
ERT
Sbjct: 309 ERT 311
>3t6g_A SH2 domain-containing protein 3C; CDC25-homology domain, GTPase
exchange factor, focal-adhesio targeting domain,
signaling protein; 2.50A {Homo sapiens}
Length = 331
Score = 79.0 bits (194), Expect = 9e-16
Identities = 37/235 (15%), Positives = 73/235 (31%), Gaps = 19/235 (8%)
Query: 778 NILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAE--YSPNLIKIMKHTTNFT 835
+ +AR +T ++ R + ++ + ++ + E P+ ++
Sbjct: 44 LLAEVDARTLARHVTKVDCLVARILGVTKEMQTLMGVRWGMELLTLPHGRQLRLDLLERF 103
Query: 836 RWL-----EKIIVEAENFDERLAIMTRIIEMMIVL-QKLNNFNGVLAVTSAMGSAAVYRL 889
+ I+ + +ER A++ + I++ L + N AV A+ A + RL
Sbjct: 104 HTMSIMLAVDILGSTGSAEERAALLHKTIQLAAELRGTMGNMFSFAAVMGALDMAQISRL 163
Query: 890 RFTFQALP---TRLQKVLEDARE--LNGDHFKKYQEKLRNINPPCIPFFGMYLTNILHIE 944
T+ L T + E + L + K L N P + L +
Sbjct: 164 EQTWVTLRQRHTEGAILYEKKLKPFLKSLNEGKEGPPLSNTTFPHVLPLITLLESDSAPP 223
Query: 945 EGNPDFLPD--SKLINFTKRRKVAEIISEIQQYQ-NEPYCL---SVVPIYREFFE 993
EG + + + Y N L P E F
Sbjct: 224 EGPEPWGSTEHGVEVVLAHLEAARTVAHHGGLYHTNAEVKLQGFQARPELLEVFS 278
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin
homology domain, structural genomics; NMR {Mus musculus}
SCOP: b.55.1.1
Length = 132
Score = 73.8 bits (181), Expect = 1e-15
Identities = 18/128 (14%), Positives = 43/128 (33%), Gaps = 15/128 (11%)
Query: 423 HELKKNVDGVDVRDLRPYLEEFY-REDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKI 481
L + + + D++ + + + + ER F VLI+ ++ ++
Sbjct: 8 QILSEPIQAWEGDDIKTLGNVIFMSQVVMQHGACEEKE--ERYFLLFSSVLIMLSASPRM 65
Query: 482 SVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNAFEIAPRDQPSIIIVTKSPED 541
S F + + + +N + + FEI I++ + +D
Sbjct: 66 S------------GFMYQGKIPIAGMVVNRLDEIEGSDCMFEITGSTVERIVVHCNNNQD 113
Query: 542 KKSWFSDL 549
+ W L
Sbjct: 114 FQEWMEQL 121
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 80.3 bits (197), Expect = 3e-15
Identities = 89/610 (14%), Positives = 191/610 (31%), Gaps = 161/610 (26%)
Query: 491 SSQYEFKCKEMY------FLRKVEINDYENTDDIKNAFEIAPRDQPSIIIVTKSPEDKKS 544
+ +++++ K++ F+ + D + D K+ D II++K
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQ--DMPKSILSKEEIDH---IIMSKDAVSGTL 65
Query: 545 WFSDLIMVNTKSMLERTLDSII------LDEEKKHPLRMPSPEYYSFAEPDSCENIILEE 598
++ + M+++ ++ ++ L K R PS + E +
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ-------RDR 118
Query: 599 KQNTNMPLIKG--------ATLHKLIERLTYHIY-------------------ADPAFI- 630
N N K L + + L
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178
Query: 631 ----GTFLTTYRSFTTPTELLDLLIDRFNVPDPNKVFENNNADIEESI-LR-EDIIRYKK 684
F ++ +P +L++L DPN + +D +I LR I +
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN---WTSRSDHSSNIKLRIHSIQAELR 235
Query: 685 ELCQPVQFR----VL-NVFRQWVQHHFYDFQ-------RDQNLLEKLKSFLLNEIS---- 728
L + + VL NV + F + R + + + L + IS
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAF-NLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 729 --GKSLRKWADIVLNLIQRKELDLEKEITFAFNNSPPPI-----EVHVPINSIDEFNILI 781
+ + ++L + + DL +E +P + + + + D + +
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPRE---VLTTNPRRLSIIAESIRDGLATWDNWKHVN 351
Query: 782 AHPVEIARQLTL--LEFDYFR-----------SVK-PSELVGSVWTKKNKAE-------- 819
+ + +L LE +R S P+ L+ +W K++
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411
Query: 820 --YSPNLIKIMKHTTNFTRWLEKIIVE-AENFDERLAIMTRIIEMMIVLQKLNNFNGVLA 876
YS L++ K T + I +E + A+ I++ + + ++ + +
Sbjct: 412 HKYS--LVE--KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467
Query: 877 VT-----SAMGSAAVYRLRFTFQA-LPTRLQKVLEDARELNGDHFKKYQEKLRNINPPCI 930
S +G + L+ T + V D R L ++K+R+ +
Sbjct: 468 YLDQYFYSHIG----HHLKNIEHPERMTLFRMVFLDFRFL--------EQKIRHDSTAWN 515
Query: 931 PFFGMYLTNIL--------HIEEGNP----------DFLP--DSKLINFTKRRKVAEIIS 970
+ N L +I + +P DFLP + LI K +++
Sbjct: 516 ASGS--ILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI----CSKYTDLLR 569
Query: 971 EIQQYQNEPY 980
++E
Sbjct: 570 IALMAEDEAI 579
Score = 70.3 bits (171), Expect = 3e-12
Identities = 103/690 (14%), Positives = 209/690 (30%), Gaps = 181/690 (26%)
Query: 44 HNSLDINTDALYYTEKLILKLLNLLCSKPLPLTTSDMEGKIKKYFPNPISEWTFNEAKQA 103
H+ +D T Y K IL + + + K + P I + E
Sbjct: 4 HHHMDFETGEHQYQYKDILSVF-------EDAFVDNFDCKDVQDMPKSI--LSKEEIDHI 54
Query: 104 LEKGKKKSSLVISIDRVQNIL---QKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYV 160
+ S R+ L Q+E + VE + + Y ++ + + +
Sbjct: 55 IMSKDAVSGT----LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 161 KNIRKVDISIQDIDVAMYAD-------------KALLELFFQEDDDPVYLEPQVQSNNVV 207
I + D D V +A +ALLEL P + NV+
Sbjct: 111 MYIEQRDRLYNDNQV--FAKYNVSRLQPYLKLRQALLEL------RP--------AKNVL 154
Query: 208 LH----------YEQVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEI 257
+ V + + K+ KIF+ + LK ++ E+
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMD-------FKIFW-----LN-LKNCNSPETVLEM 201
Query: 258 IEEIYNLTVCLLGAVEDISEMSSDDHCIGSCFEEFAEDAEFDVYEKLLHNIVNQKSIEVL 317
++++ + D S + +LL + + + VL
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLR----------IHSIQ-AELRRLLKSKPYENCLLVL 250
Query: 318 SMHVTQPSILNTLQFAGYGFKEC----------VKYYLPNLLMS--PLYHCNLYF---EY 362
+V N C V +L + L H ++ E
Sbjct: 251 L-NVQNAKAWNAFNL------SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 363 IKIFHSLTDSSKDKECL-EQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEK 421
+ D L + P ++S+ S+ ++G ++ KH+ +
Sbjct: 304 KSLLLKYLDCRPQD--LPREVLTT-NPRRLSIIAESI-RDGLA----TWDNWKHVNCDKL 355
Query: 422 IHELKKNVDGVDVRDLRPYLEEF--YRED------TLMKY-DGKSNRLTERKVYFFDGVL 472
++ +++ ++ + R + + L V
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Query: 473 ILCKSNKKISVTVPINVVSSQYEFKCK--EMYFLRKVEINDYENTDDIKNAFEIAPRDQP 530
++ K K+ ++++P S E K K Y L + ++ Y I F+ D
Sbjct: 416 LVEKQPKESTISIP----SIYLELKVKLENEYALHRSIVDHYN----IPKTFD--SDD-- 463
Query: 531 SIIIVTKSPEDKKSWFSDLI--MVNTKSMLERT--LDSIILDEEKKHPLRMPSPEYYSFA 586
+ D + ++S + + N + ER + LD + F
Sbjct: 464 ----LIPPYLD-QYFYSHIGHHLKNIE-HPERMTLFRMVFLD--------------FRF- 502
Query: 587 EPDSCENIILEEK-QNTNMPLIKGATLHKLIERL-TY--HIY-ADPAF------IGTFLT 635
LE+K ++ + ++ +++L Y +I DP + I FL
Sbjct: 503 ---------LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP 553
Query: 636 TYRSFTTPTELLDLLIDRFNVPDPNK-VFE 664
++ DLL R + ++ +FE
Sbjct: 554 KIEENLICSKYTDLL--RIALMAEDEAIFE 581
Score = 62.6 bits (151), Expect = 6e-10
Identities = 78/569 (13%), Positives = 154/569 (27%), Gaps = 186/569 (32%)
Query: 546 FSDLIMVNTKSM--------LERTLDSIILDEEKKHPLRMPSPE---YYSFAEPDSCENI 594
+ D++ V + ++ SI+ EE H + F
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF--------W 69
Query: 595 ILEEKQNTNMPLIKGATLHK----LIERLTYHIYADPAFIGTFLTTYRS--FTTPTELLD 648
L KQ + L L+ + P+ + R +
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE-QRQPSMMTRMYIEQRDRLYNDNQ---- 124
Query: 649 LLIDRFNVPDPNKVFENNNADIE----------------ESILREDIIRYKKELCQPVQF 692
+ ++NV + A +E ++ + D+ K C+ F
Sbjct: 125 -VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM-DF 182
Query: 693 RVLNVFRQWVQHHFYDFQRDQNLLEKLKSFLLNEISGKSLRKWADIVLNLIQRKELDLEK 752
+F W+ + + + +LE L+ L I N R +
Sbjct: 183 ---KIF--WL--NLKNCNSPETVLEMLQKLLYQ------------IDPNWTSRSD----- 218
Query: 753 EITFAFNNSPPPIEVHVPINSIDEFNILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVW 812
++S + +H + E L+ + LL +V
Sbjct: 219 ------HSSNIKLRIH---SIQAELRRLLKSKP---YENCLLVLL------------NVQ 254
Query: 813 TKKNKAEYSPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNFN 872
K A N ++ + TR +
Sbjct: 255 NAK--------------------------AWNAFNLSCKILLTTRFKQ------------ 276
Query: 873 GVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDARELNGDHFKKY----QEKLR----N 924
VT + +A + ++ L ++ + L KY + L
Sbjct: 277 ----VTDFLSAATTTHISLDHHSMT--LTP--DEVKSL----LLKYLDCRPQDLPREVLT 324
Query: 925 INPPCIPFFGMYLTNILHIEEGNPDFLPDSKLINFTKRRKVAEIISEIQQYQNEPYCLSV 984
NP + + + + K +N K + E + EP
Sbjct: 325 TNPRRLSIIAESIRD-------GLATWDNWKHVNCDKLTTIIESSLNVL----EPA---- 369
Query: 985 VPIYREFFENLSPFE---GIDDNEMCNILFEQSLLIEPRHATHVPKFPRKWPNISLKSPL 1041
YR+ F+ LS F I + +++ + + + K + SL +
Sbjct: 370 --EYRKMFDRLSVFPPSAHIPTILLS-LIWFDVIKSDVMVVVN--KLHKY----SL---V 417
Query: 1042 VKIKKTRVLSELPGFHFEESAQSEVDEPA 1070
K K +S +P + E + E +E A
Sbjct: 418 EKQPKESTIS-IPSIYLELKVKLE-NEYA 444
Score = 58.3 bits (140), Expect = 1e-08
Identities = 73/436 (16%), Positives = 128/436 (29%), Gaps = 114/436 (26%)
Query: 16 NCDFHEAYNENRWKGTLVSSLHSILKQVHNSLDINTDALYYTEKLILKLLNLLCSKPLP- 74
NC+ E E L L+ I + D +++ + +L LL SKP
Sbjct: 191 NCNSPETVLEM-----LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 75 ------------------------LTTSD------MEGKIKKYFPNPISEWTFN--EAKQ 102
LTT + + T E K
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 103 ALEK--GKKKSSL---VISID-RVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLV 156
L K + L V++ + R +I+ + + + +V D L
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESI---RDGLATWDNW----KHVNCDKLT-- 356
Query: 157 GNYVKNIRKVDISIQDIDVAMYADKALLELF--FQEDDDPVYLEPQVQS----NNVVLHY 210
++ S+ ++ A Y + + + F ++ + S + +
Sbjct: 357 -------TIIESSLNVLEPAEY--RKMFDRLSVFPPS---AHIPTILLSLIWFDVIKSDV 404
Query: 211 EQVVNDFV---------AEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEI 261
VVN E + I + L LK+ L+ +H I++
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKV---------KLENEYALHR--SIVDH- 452
Query: 262 YNLTVCLLGAVEDISEMSSDD----HCIGSCFEEFAEDAEFDVYEKLLHNI--VNQKSIE 315
YN+ +D+ D H IG + ++ + + + QK
Sbjct: 453 YNIPKTFDS--DDLIPPYLDQYFYSH-IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509
Query: 316 VLSMHVTQPSILNTLQ-FAGYGFKECVKYYLPNLLMSPLYH--CNLYFEYIKIFHSLTDS 372
+ SILNTLQ Y Y N P Y N +++
Sbjct: 510 DSTAWNASGSILNTLQQLKFYK-----PYICDN---DPKYERLVNAILDFLPKIEENLIC 561
Query: 373 SKDKECLEQAQGLLAP 388
SK + L A L+A
Sbjct: 562 SKYTDLLRIA--LMAE 575
Score = 43.3 bits (101), Expect = 4e-04
Identities = 41/327 (12%), Positives = 91/327 (27%), Gaps = 68/327 (20%)
Query: 820 YSPNLIKIM--KHTTNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAV 877
+ + K + + I+ E D + + + + L + V
Sbjct: 25 FEDAFVDNFDCKDVQDMPK----SILSKEEIDHIIMSKDAVSGTLRLFWTLLS-KQEEMV 79
Query: 878 TSAMGSAAVYRLRFTFQALPTRLQKVLEDARELNGDHFKKYQEKLRNINPPCIPFF---- 933
+ LR ++ L + ++ + + + +++L N N +
Sbjct: 80 QKFVEEV----LRINYKFLMSPIKTEQRQ-PSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134
Query: 934 GMYLTNILHIEEGNP-------------------DFLPDSKL----------INFTKRRK 964
YL + E P D K+ +N
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 965 VAEIISEIQQ--YQNEPYCLSVVPIYREFFENLSPFEGIDDNEMCNILFEQSLLI--EPR 1020
++ +Q+ YQ +P S + + + + +E LL+ +
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 1021 HATHVPKFPRKWPNISLKSPLVKIKKTRVLSELPGFHFEESAQSEVDEPATPITPSNHMG 1080
+A F N+S K L+ + +V L + +D + +TP
Sbjct: 255 NAKAWNAF-----NLSCKI-LLTTRFKQVTDFLSA---ATTTHISLDHHSMTLTPDE--- 302
Query: 1081 SNSDFSIFAPIIIGNL-------HPLV 1100
S + +L +P
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRR 329
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology
domain, pleckstrin homology domain, GTPase, guanine
nucleotide exchange factor; 2.80A {Mus musculus} SCOP:
a.87.1.1 b.55.1.1
Length = 377
Score = 77.3 bits (190), Expect = 5e-15
Identities = 58/371 (15%), Positives = 122/371 (32%), Gaps = 54/371 (14%)
Query: 211 EQVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCLLG 270
+V+ + + E+ ++++L +++ + + L K T L + E+ LF + E+ V L
Sbjct: 13 RKVICELLETERTYVKDLNCLMERYLKPLQKETFLTQ-DELDVLFGNLTEMVEFQVEFLK 71
Query: 271 AVEDISEMSSDDH-------------CIGSCFEEFAEDAEFDVYEKLLHNIVNQ-KSIEV 316
+ED + D +G F +A+ F +Y + K +V
Sbjct: 72 TLEDGVRLVPDLEKLEKVDQFKKVLFSLGGSFLYYADR--FKLYSAF---CASHTKVPKV 126
Query: 317 LSMHVTQPSILNTLQFAGYGFKECVKYYLPNLLMSPL-----YHCNLYFEYIKIFHSLTD 371
L T + L ++ L + L+ P+ Y L E
Sbjct: 127 LVKAKTDTAFKAFLDAQNP--RQQHSSTLESYLIKPIQRVLKYP-LLLRELFA---LTDA 180
Query: 372 SSKDKECLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKNVDG 431
S++ L+ A + + S I N + + + + + +
Sbjct: 181 ESEEHYHLDVA---IKTMNKVASHI-------NEMQKIHEEFGAVFDQLIAEQTGEKKEV 230
Query: 432 VDVRDLRPYLEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCK-----SNKKISVTVP 486
D+ L GK + E + F ++L KK+ +
Sbjct: 231 ADLSMGDLLLHTSVIWLNPPASLGKWKKEPELAAFVFKTAVVLVYKDGSKQKKKLVGSHR 290
Query: 487 INVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNAF--------EIAPRDQPSIIIVTKS 538
+++ F+ + M +++ + D NA E R + + S
Sbjct: 291 LSIYEEWDPFRFRHMIPTEALQVRALPSADAEANAVCEIVHVKSESEGRPERVFHLCCSS 350
Query: 539 PEDKKSWFSDL 549
PE +K + +
Sbjct: 351 PESRKDFLKSV 361
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC),
endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Length = 510
Score = 75.4 bits (185), Expect = 4e-14
Identities = 56/349 (16%), Positives = 126/349 (36%), Gaps = 32/349 (9%)
Query: 212 QVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCLLGA 271
+++ + E+ ++ +L+L++++F + + + L E E+ +F +E+ LL A
Sbjct: 30 GYIHELIQTEERYMADLQLVVEVFQKRMAESGFLTE-GEMALIFVNWKELIMSNTKLLKA 88
Query: 272 VEDISEMSSDD---HCIGSCFEEFAEDAEFDVYEKLLHNIVNQKSIEVLSMHVTQPSILN 328
+ + + IG Y + +N + +
Sbjct: 89 LRVRKKTGGEKMPVQMIGDILAAELS--HMQAYIRFCSCQLNGAA-LLQQKTDEDTDFKE 145
Query: 329 TLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYIK-IFHSLTDSSKDKECLEQAQGLLA 387
L+ C L + L+ P+ Y I+ I + +S D L+ A L
Sbjct: 146 FLKKLAS-DPRCKGMPLSSFLLKPMQRITRYPLLIRSILENTPESHADHSSLKLA---LE 201
Query: 388 PLQISLSKISLEKNGKNACVR---NYNRVKHLQSLEKIHELKKNVDGVDVRDLRPYLEEF 444
+ S++ N VR N +R++ +Q+ + L + + + + +
Sbjct: 202 RAEELCSQV-------NEGVREKENSDRLEWIQAHVQCEGLAEQLIFNSLTNCLGP-RKL 253
Query: 445 YREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMY-- 502
L K+ E + F+ L+L K+ +V+ + S +MY
Sbjct: 254 LHSGKLY----KTKSNKELHGFLFNDFLLLTYMVKQFAVSSGSEKLFSSKSNAQFKMYKT 309
Query: 503 --FLRKVEINDYENTDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDL 549
FL +V + + + F I+ D+ + T + ++ +W +
Sbjct: 310 PIFLNEVLVKLPTDPSSDEPVFHISHIDR-VYTLRTDNINERTAWVQKI 357
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain,
alternative splicing, cytoplasm, guanine- nucleotide
releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Length = 346
Score = 72.9 bits (179), Expect = 1e-13
Identities = 57/354 (16%), Positives = 118/354 (33%), Gaps = 48/354 (13%)
Query: 213 VVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCLLGAV 272
+ + E+ I +LKL K +++ + K++ + E +E++ +F ++ + L LL +
Sbjct: 23 AIFELSQGEEDLIEDLKLAKKAYHDPMLKLSIMTE-QELNQIFGTLDSLIPLHEELLSQL 81
Query: 273 EDISEMSSDDHCIGSCFEEFAEDAEFDVYEKLLHNIVNQ-KSIEVLSMHVTQPSILNTLQ 331
D+ + +G + Y+ NQ + +L + + LQ
Sbjct: 82 RDVRKPDGSTEHVGPILVGWLP--CLSSYDSY---CSNQVAAKALLDHKKQDHRVQDFLQ 136
Query: 332 FAGYGFKECVKYYLPNLLMSPL-----YHCNLYFEYIKIFHSLTDSSKDKECLEQAQGLL 386
K L N L P Y L +I + + D++ LE+A
Sbjct: 137 RCL-ESPFSRKLDLWNFLDIPRSRLVKYP--LLLR--EILRHTPNDNPDQQHLEEA---- 187
Query: 387 APLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKNVDGVDVRDLRPYLEEFYR 446
++ I + + + L +G L
Sbjct: 188 ------INII------QGIVAEINTKTGESECRYYKERLLYLEEGQKD-SLIDSSRVLCC 234
Query: 447 EDTLMKYDGKSNRLTERKVYFFDGVLILCKS---NKKISVTV---PINVVSSQYEFKCKE 500
L K+NR + V+ F VL++ ++ N+++ + PI V E
Sbjct: 235 HGEL-----KNNRGVKLHVFLFQEVLVITRAVTHNEQLCYQLYRQPIPVKDLTLEDLQDG 289
Query: 501 MYFLRKVEINDYENTDDIKNAFEI---APRDQPSIIIVTKSPEDKKSWFSDLIM 551
L + N + +KN F + + + +K+ W + +
Sbjct: 290 EVRLGGSLRGAFSNNERVKNFFRVSFKNGSQSQTHSLQANDTFNKQQWLNCIRQ 343
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 74.3 bits (182), Expect = 2e-13
Identities = 108/652 (16%), Positives = 202/652 (30%), Gaps = 226/652 (34%)
Query: 65 LNLLCSKPLPLTTSDMEGKIKKYFPNPISEWTFNEAKQALEKGKKKSSLVISIDRVQNIL 124
++ ++PL L+ G ++ P + + A Q L
Sbjct: 1 MDAYSTRPLTLS----HGSLEHVLLVPTASFFI--ASQ---------------------L 33
Query: 125 QKEFYFRKVETNMVLYYAAVLDYVAAD-----LLKLVGNYVKNIRKVDISIQDIDVAMYA 179
Q++F + AAD +LVG ++ + + ++ V +
Sbjct: 34 QEQFN---------KILPEPTEGFAADDEPTTPAELVGKFLGYVSSL---VEPSKVGQFD 81
Query: 180 DKALLELFFQEDDDPVYLEPQVQSNNVVLHYEQVVNDFVAEEKLFIRELKLILKIFYEEL 239
+L L E ++ YL + N++ H + + E + + K ++K +
Sbjct: 82 Q--VLNLCLTEFEN-CYL----EGNDI--H--ALAAKLLQENDTTLVKTKELIKNYITAR 130
Query: 240 NKITPLKEIKEVHSLFEIIEEIYNLTVCLL----GAVEDISEMSSDDHCIGSCFEEFAED 295
+ K +LF + E N + + G +D FEE +
Sbjct: 131 IMAKRPFDKKSNSALFRAVGE-GNAQLVAIFGGQGNTDD-------------YFEELRD- 175
Query: 296 AEFDVYEKLLHNIVNQKSIEVLSMHVTQPSILNTLQFAGYGFKECVK--------YYLPN 347
+ Y L+ +++ + S E LS + + G E ++ YL +
Sbjct: 176 -LYQTYHVLVGDLI-KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS 233
Query: 348 LLMS-PL--------YH--CNLY----FEYIKIFHSLTDSSKDKECLEQAQGLLAPLQIS 392
+ +S PL Y L E T S QGL+ + I+
Sbjct: 234 IPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS---------QGLVTAVAIA 284
Query: 393 LSKI--SLEKNGKNA----------CVRNYNRVKHLQSLE--KIHELKKNVDGV-----D 433
+ S + + A C Y SL + + +N +GV
Sbjct: 285 ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT----SLPPSILEDSLENNEGVPSPMLS 340
Query: 434 VRDLRPYLEEFYREDTLMKYDGKSNR-LTERKVYFFDGVLILCKSNKKISVTVPIN---- 488
+ +L + + Y K+N L K++ +++ +N
Sbjct: 341 ISNLTQ--------EQVQDYVNKTNSHLPA---------------GKQVEISL-VNGAKN 376
Query: 489 -VVS----SQYEFKCKEMYFLRKVEINDYENTDDIKNAFEIAPR--DQPSIIIVTKSP-E 540
VVS S Y LRK + AP DQ ++ P
Sbjct: 377 LVVSGPPQSLYGLNLT----LRKAK----------------APSGLDQ------SRIPFS 410
Query: 541 DKKSWFSD--L-IMV--NTKSMLERTLDSIILDEEKKH------PLRMPSPEYYSFAEPD 589
++K FS+ L + ++ +L D I D K + +++P Y +F D
Sbjct: 411 ERKLKFSNRFLPVASPFHS-HLLVPASDLINKDLVKNNVSFNAKDIQIPV--YDTFDGSD 467
Query: 590 --SCENIILEE--KQNTNMPL-----IKGATLHKL---------IERLTYHI 623
I E +P+ + H L + LT+
Sbjct: 468 LRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRN 519
Score = 58.1 bits (140), Expect = 2e-08
Identities = 92/587 (15%), Positives = 157/587 (26%), Gaps = 219/587 (37%)
Query: 639 SFTTPTELL---DLLIDRF--NVPDPNKVFENNNADIEESILREDIIRYKKELCQPVQFR 693
PT L ++F +P+P + F AD E + E + ++ + V+
Sbjct: 19 VLLVPTASFFIASQLQEQFNKILPEPTEGFA---ADDEPTTPAELVGKFLGYVSSLVEPS 75
Query: 694 VLNVFRQWVQHHFYDFQRDQNLLEKLKSFLLNEISGKSLRKWADI---VLNLIQRKELDL 750
+ F Q + +F+ +L DI L+Q + L
Sbjct: 76 KVGQFDQVLNLCLTEFENC---------YLEGN----------DIHALAAKLLQENDTTL 116
Query: 751 EKE---ITFAFN-----NSPPPIEVHVPINSIDEFNILIAHPVEIARQLTLLEF------ 796
K I P NS + A A+ + + F
Sbjct: 117 VKTKELIKNYITARIMAKRPFDK----KSNSA----LFRAVGEGNAQLVAI--FGGQGNT 166
Query: 797 -DYFRSVKPSELVGSVWTKKNKAEYSP---NLIKIM------------------KHTTNF 834
DYF EL ++ Y +LIK N
Sbjct: 167 DDYFE-----ELR-DLYQ-----TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI 215
Query: 835 TRWLEKIIVEAENF--DERLA--------I-MTRIIEMMIVLQKL--------NNFNGVL 875
WLE N + L I + ++ ++ + L + G
Sbjct: 216 LEWLE----NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGAT 271
Query: 876 AVTSAMGSAAV----------YR-----LRFTF-------QALP-TRL-QKVLEDARELN 911
+ + +A + + F +A P T L +LED+ E N
Sbjct: 272 GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE-N 330
Query: 912 GDHFKKYQEKLRNINPPCIPFF---GMYLTNIL-HIEEGNPDFLPDSK-----LIN---- 958
+ P P + + ++ + N LP K L+N
Sbjct: 331 NE------------GVPS-PMLSISNLTQEQVQDYVNKTN-SHLPAGKQVEISLVNGAKN 376
Query: 959 F-------------TKRRKVAEIISEIQQYQNEPYCLSVVPIYREFFENLSPF------- 998
RK S + Q + P+ + F SPF
Sbjct: 377 LVVSGPPQSLYGLNLTLRKAK-APSGLDQSR-IPFSERKLKFSNRFLPVASPFHSHLLVP 434
Query: 999 --EGID-DNEMCNILFEQSLLIEPRHATHVPKFPRKWPNISLKSPLVKIKKTRVLS-ELP 1054
+ I+ D N+ F + P + T ++ RVLS +
Sbjct: 435 ASDLINKDLVKNNVSFNAKDIQIPVYDTF------DGSDL------------RVLSGSIS 476
Query: 1055 GFHFEESAQSEVDEPATPITPSNHM-----GSNSDFSIFAPIIIGNL 1096
+ + V T + H+ G S +G L
Sbjct: 477 ERIVDCIIRLPVKWETTTQFKATHILDFGPGGASG--------LGVL 515
Score = 57.0 bits (137), Expect = 4e-08
Identities = 51/294 (17%), Positives = 92/294 (31%), Gaps = 97/294 (32%)
Query: 15 DNCDFH--EAYNENRWKGTLVSSLHSILKQVHNSLDINTDALY-----YTEKLILKLLNL 67
+ D H + Y SIL V N N L K I + +
Sbjct: 1647 NRADNHFKDTYGF------------SILDIVIN----NPVNLTIHFGGEKGKRIRENYSA 1690
Query: 68 LCSKPLPLTTSDMEGKIKKYFPN---PISEWTFNEAK---------Q-ALEKGKKKSSLV 114
+ + T D + K +K F + +TF K Q AL +
Sbjct: 1691 MIFE----TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPAL--------TL 1738
Query: 115 ISIDRVQNILQKEFYFRKV---------ETNMVLYYAA------VLDYVAADLLKLV--- 156
+ + L+ + E YAA V+ L+++V
Sbjct: 1739 MEKAAFE-DLKSKGLIPADATFAGHSLGE------YAALASLADVMSI--ESLVEVVFYR 1789
Query: 157 GNYVKNIRKVDISIQDIDVAMYA-DKALLELFFQEDDDPVYLEPQVQSNNVVLHYEQVVN 215
G ++ D + + M A + + F ++ +E + ++ ++VN
Sbjct: 1790 GMTMQVAVPRD-ELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV---EIVN 1845
Query: 216 ------------DFVAEEKL--FIRELKLILKIFYEELNKITPLKEIKEVHSLF 255
D A + + + +K + KI EL K L+E++ LF
Sbjct: 1846 YNVENQQYVAAGDLRALDTVTNVLNFIK-LQKIDIIELQKSLSLEEVEG--HLF 1896
Score = 53.9 bits (129), Expect = 3e-07
Identities = 53/301 (17%), Positives = 104/301 (34%), Gaps = 84/301 (27%)
Query: 512 YENTDDIKNAFEIAPRDQP-------SII-IVTKSPEDKKSWFSDL----IMVNTKSMLE 559
Y+ + ++ + A D SI+ IV +P + F I N +M+
Sbjct: 1636 YKTSKAAQDVWNRA--DNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIF 1693
Query: 560 RTLDSIILDEEKKHPLRMPSPEYYSFAEPDSCENIILEEKQNTN--MPLIKGATLHKLIE 617
T+ L EK Y+F +L Q T + L++ A L
Sbjct: 1694 ETIVDGKLKTEKIFKEINEHSTSYTFRSEKG----LLSATQFTQPALTLMEKAAFEDLKS 1749
Query: 618 RLTYHIYADPAFIG------TFLTTYRSFTTPTELLDLLIDR-----FNVP--------- 657
+ I AD F G L + + L++++ R VP
Sbjct: 1750 K--GLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNY 1807
Query: 658 -----DPNKVFENNNADIEESILREDIIRYKKELCQPVQFRVLNV-FRQWVQHHFYDFQR 711
+P +V + + + + ++ E + + L + V + NV +Q+V
Sbjct: 1808 GMIAINPGRVAASFSQEALQYVV-ERVGKRTGWLVEIVNY---NVENQQYV--------- 1854
Query: 712 DQNLLEKLKSFLLNEISG--KSLRKWADIVLNLIQRKELDLEK-EITFAFNNSPPPIEVH 768
+G ++L + VLN I+ +++D+ + + + S +E H
Sbjct: 1855 ---------------AAGDLRALDTVTN-VLNFIKLQKIDIIELQKSL----SLEEVEGH 1894
Query: 769 V 769
+
Sbjct: 1895 L 1895
Score = 37.0 bits (85), Expect = 0.045
Identities = 39/243 (16%), Positives = 79/243 (32%), Gaps = 89/243 (36%)
Query: 253 SLFEIIEEIYN---LTVCLLGA-----VEDISEMSSDDHCIGSC-----FEEFAEDAEFD 299
S+ +I+ N LT+ G E+ S M + G F+E E +
Sbjct: 1660 SILDIVIN--NPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSY 1717
Query: 300 VYEKLLHNIVNQKSIEVLSM-HVTQPSIL-------NTLQ----------FAG--YGFKE 339
+ +LS TQP++ L+ FAG G E
Sbjct: 1718 TFRS---------EKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLG--E 1766
Query: 340 CVKYYLPNLLMSPLYHCN--LYFE-YIKIFH----SLTDSSKDKECLEQAQGLLA--PLQ 390
Y + L + E +++ ++ + E G++A P +
Sbjct: 1767 ---Y-------AALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGR 1816
Query: 391 ISLS-----------KISLEKNGKNACVRNYN----------RVKHLQSLEKI-HELK-K 427
++ S ++ ++ G + NYN ++ L ++ + + +K +
Sbjct: 1817 VAASFSQEALQYVVERVG-KRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQ 1875
Query: 428 NVD 430
+D
Sbjct: 1876 KID 1878
Score = 33.9 bits (77), Expect = 0.43
Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 10/81 (12%)
Query: 932 FFGMYLTNILHIEEGNPDFLPDSKLINFT--KRRKVAEIISEIQQYQNEPYCLSVVPIYR 989
F Y +IL I N P + I+F K +++ E S + L I++
Sbjct: 1653 FKDTYGFSILDIVINN----PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFK 1708
Query: 990 EFFENLS--PFEGIDDNEMCN 1008
E E+ + F + + +
Sbjct: 1709 EINEHSTSYTFRS--EKGLLS 1727
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA
complex, pdzrhogef, guanine nucleotide exchange F RHOA,
signaling protein; 2.84A {Homo sapiens}
Length = 418
Score = 65.7 bits (160), Expect = 3e-11
Identities = 58/361 (16%), Positives = 117/361 (32%), Gaps = 46/361 (12%)
Query: 212 QVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCLLGA 271
+V+N+ E +R L+++ IFY+ + K + +E+ LF + E+ + A
Sbjct: 66 EVINELFVTEASHLRTLRVLDLIFYQRMKKENLMPR-EELARLFPNLPELIEIHNSWCEA 124
Query: 272 VEDISEMSSDDHCIGSCFEEFAEDAE----FDVYEKLLHNIVNQKSIEVLSMHVTQPSIL 327
++ + E I + V + + + +
Sbjct: 125 MKKLREEGPIIKEISDLMLARFDGPAREELQQVAAQFCSYQSIALE-LIKTKQRKESRFQ 183
Query: 328 NTLQFAGYGFKECVKYYLPNLLMSPL-----YHCNLYFEYIKIFHSLTDSSKDKECLEQA 382
+Q A +C + L +L++S + Y L E I + + E L +A
Sbjct: 184 LFMQEAE-SHPQCRRLQLRDLIISEMQRLTKYP--LLLE--SIIKHTEGGTSEHEKLCRA 238
Query: 383 QGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKNVDGVDVRDL-RPYL 441
+ +I N VK ++ ++ +K +D + P
Sbjct: 239 RDQ-------CREILKYVN---------EAVKQTENRHRLEGYQKRLDATALERASNPLA 282
Query: 442 EEFYREDTL---MKYDG------KSNRLTERKVYFFDGVLILCKSNKK---ISVTVPINV 489
EF D M ++G ++ + V + +L+L + + + V
Sbjct: 283 AEFKSLDLTTRKMIHEGPLTWRISKDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAV 342
Query: 490 VSSQYEFKCKEMYFLRKVEINDYENTDDIKNAFEIAPRDQPSI-IIVTKSPEDKKSWFSD 548
SS + + L V I + P I +V + DK +W
Sbjct: 343 GSSDSKQTFSPVLKLNAVLIRSVATDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMEL 402
Query: 549 L 549
L
Sbjct: 403 L 403
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY
crystallography, regulation of RHOA GTPase, protein
complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 3kz1_A*
Length = 368
Score = 64.5 bits (157), Expect = 6e-11
Identities = 57/364 (15%), Positives = 118/364 (32%), Gaps = 52/364 (14%)
Query: 212 QVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCLLGA 271
+V+N+ E +R L+++ IFY+ + K + +E+ LF + E+ + A
Sbjct: 24 EVINELFVTEASHLRTLRVLDLIFYQRMKKENLMPR-EELARLFPNLPELIEIHNSWCEA 82
Query: 272 VEDISEMSSDDHCIGSCFEEFAEDAE----FDVYEKLLHNIVNQKSIEVLSMHVTQPSIL 327
++ + E I + V + + + +
Sbjct: 83 MKKLREEGPIIKEISDLMLARFDGPAREELQQVAAQFCSYQSIALE-LIKTKQRKESRFQ 141
Query: 328 NTLQFAGYGFKECVKYYLPNLLMSPL-----YHCNLYFEYIKIFHSLTDSSKDKECLEQA 382
+Q A +C + L +L++S + Y L E I + + E L +A
Sbjct: 142 LFMQEAE-SHPQCRRLQLRDLIISEMQRLTKYP--LLLE--SIIKHTEGGTSEHEKLCRA 196
Query: 383 QGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKNVDGVDVRDLRPYLE 442
+ L + N V+ ++ ++ +K +D + L
Sbjct: 197 ---RDQCREILKYV-------NEAVKQT------ENRHRLEGYQKRLDATALERASNPLA 240
Query: 443 EFYREDTL----MKYDG------KSNRLTERKVYFFDGVLILCKSNKK---ISVTVPINV 489
++ L M ++G ++ + V + +L+L + + + V
Sbjct: 241 AEFKSLDLTTRKMIHEGPLTWRISKDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAV 300
Query: 490 VSSQYEFKCKEMYFLRKVEINDYENTDDIKNAFEI----APRDQPSIIIVTKSPEDKKSW 545
SS + + L V I K AF I +V + DK +W
Sbjct: 301 GSSDSKQTFSPVLKLNAVLIRSVATD---KRAFFIICTSKLGPPQIYELVALTSSDKNTW 357
Query: 546 FSDL 549
L
Sbjct: 358 MELL 361
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH),
beta sandwich (PH), signaling protein; 2.13A {Homo
sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Length = 385
Score = 64.5 bits (157), Expect = 6e-11
Identities = 52/352 (14%), Positives = 131/352 (37%), Gaps = 28/352 (7%)
Query: 212 QVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCLLGA 271
+V+N+ E+ +R LK++ ++FY+ +++ L E+ +F +E+I L + L
Sbjct: 27 EVINELFYTERAHVRTLKVLDQVFYQRVSREGILSP-SELRKIFSNLEDILQLHIGLNEQ 85
Query: 272 VEDISEMSSDD--HCIGSCFEE----FAEDAEFDVYEKLLHNIVNQKSIEVLSMHVTQPS 325
++ + + + IG E+ N + S
Sbjct: 86 MKAVRKRNETSVIDQIGEDLLTWFSGPGEEKLKHAAATFCSNQPFALE-MIKSRQKKDSR 144
Query: 326 ILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYIKIFHSLTDSSKDKECLEQAQGL 385
+Q A C + L +++ + + Y + T+ ++E +++A
Sbjct: 145 FQTFVQDA-ESNPLCRRLQLKDIIPTQMQRLTKYPLLLDNIAKYTEWPTEREKVKKA--- 200
Query: 386 LAPLQISLSKISLEKNGKNACVR---NYNRVKHLQS-LE-KIHELKKNVDGVDVRDLRPY 440
+ L+ + N V+ N R++ Q L+ +L + + ++R+L
Sbjct: 201 ADHCRQILNFV-------NQAVKEAENKQRLEDYQRRLDTSSLKLSEYPNVEELRNLDLT 253
Query: 441 LEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKS-NKKISVTVPINVVSSQYEFKCK 499
+ E L + ++ + + +L+L + + ++ + +++S + K
Sbjct: 254 KRKMIHEGPL-VWKVNRDKTIDLYTLLLEDILVLLQKQDDRLVLRCHSKILASTADSKHT 312
Query: 500 EMYFLRKVEINDYENTDDIKNAFEIAPRDQP--SIIIVTKSPEDKKSWFSDL 549
++ + + D K F I+ D +V ++ +K W +
Sbjct: 313 FSPVIKLSTVLVRQVATDNKALFVISMSDNGAQIYELVAQTVSEKTVWQDLI 364
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo
sapiens} PDB: 3odx_A
Length = 536
Score = 64.7 bits (157), Expect = 9e-11
Identities = 49/354 (13%), Positives = 128/354 (36%), Gaps = 33/354 (9%)
Query: 212 QVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCLLGA 271
+V+++ + E +R L+++ +F++ + + +E+ ++F ++E+ + L
Sbjct: 183 EVISELLVTEAAHVRMLRVLHDLFFQPMAECLFFPL-EELQNIFPSLDELIEVHSLFLDR 241
Query: 272 VED-ISEMSSDDHCIGSCFEEFAEDAEFDVYEKLLHN-IVNQ-KSIEVLSMHVTQPSILN 328
+ E IG + AE ++K+ Q ++E L +
Sbjct: 242 LMKRRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKDPRFC 301
Query: 329 TLQFAGYGFKECVKYYLPNLLMSPL-----YHCNLYFEYIKIFHSLTDSSKDKECLEQAQ 383
C + L +++ + + Y L + I T+ ++E +E A
Sbjct: 302 AFVQEAESRPRCRRLQLKDMIPTEMQRLTKYP--LLLQSI---GQNTEEPTEREKVELA- 355
Query: 384 GLLAPLQISLSKISLEKNGKNACVR---NYNRVKHLQSLEKIHELKKNVDGV--DVRDLR 438
+ L + N VR + R+K Q + L+++ D + + ++L
Sbjct: 356 --AECCREILHHV-------NQAVRDMEDLLRLKDYQRRLDLSHLRQSSDPMLSEFKNLD 406
Query: 439 PYLEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKC 498
++ E L ++ E V D +L+L + + + + +
Sbjct: 407 ITKKKLVHEGPLTW-RVTKDKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGK 465
Query: 499 KEMYFLRKVEINDYENTDDIKNAFEI---APRDQPSIIIVTKSPEDKKSWFSDL 549
+ + ++ AF + ++ +V ++ ++K+W + +
Sbjct: 466 TMLRPVLRLTSAMTREVATDHKAFYVLFTWDQEAQIYELVAQTVSERKNWCALI 519
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo
sapiens} PDB: 3odo_A
Length = 377
Score = 63.0 bits (153), Expect = 2e-10
Identities = 49/362 (13%), Positives = 126/362 (34%), Gaps = 49/362 (13%)
Query: 212 QVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCLLGA 271
+V+++ + E +R L+++ +F++ + + +E+ ++F ++E+ + L
Sbjct: 30 EVISELLVTEAAHVRMLRVLHDLFFQPMAECLFFPL-EELQNIFPSLDELIEVHSLFLDR 88
Query: 272 VED-ISEMSSDDHCIGSCFEEFAEDAEFDVYEKLLHNIVNQKSIEVLSMHVTQPSILNTL 330
+ E IG + AE ++K+ ++ L
Sbjct: 89 LMKRRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCSR--------QSFALEQLKAK 140
Query: 331 QFAGYGFK----------ECVKYYLPNLLMSPL-----YHCNLYFEYIKIFHSLTDSSKD 375
Q F C + L +++ + + Y L + I T+ +
Sbjct: 141 QRKDPRFCAFVQEAESRPRCRRLQLKDMIPTEMQRLTKYP--LLLQSI---GQNTEEPTE 195
Query: 376 KECLEQAQGLLAPLQISLSKISLEKNGKNACVR---NYNRVKHLQS-LEKIHELKKNVDG 431
+E +E A + L + N VR + R+K Q L+ H + +
Sbjct: 196 REKVELA---AECCREILHHV-------NQAVRDMEDLLRLKDYQRRLDLSHLRQSSDPM 245
Query: 432 V-DVRDLRPYLEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVV 490
+ + ++L ++ E L ++ E V D +L+L + + + +
Sbjct: 246 LSEFKNLDITKKKLVHEGPLTWR-VTKDKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRT 304
Query: 491 SSQYEFKCKEMYFLRKVEINDYENTDDIKNAFEI---APRDQPSIIIVTKSPEDKKSWFS 547
+ + + ++ AF + ++ +V ++ ++K+W +
Sbjct: 305 LTPTPDGKTMLRPVLRLTSAMTREVATDHKAFYVLFTWDQEAQIYELVAQTVSERKNWCA 364
Query: 548 DL 549
+
Sbjct: 365 LI 366
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding
protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB:
1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C
3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C
3azj_C 3azk_C 3azl_C 3azm_C ...
Length = 129
Score = 58.3 bits (140), Expect = 3e-10
Identities = 25/89 (28%), Positives = 49/89 (55%)
Query: 99 EAKQALEKGKKKSSLVISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGN 158
+A+ + ++ L + RV +L+K Y +V +Y AAVL+Y+ A++L+L GN
Sbjct: 10 KARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGN 69
Query: 159 YVKNIRKVDISIQDIDVAMYADKALLELF 187
++ +K I + + +A+ D+ L +L
Sbjct: 70 AARDNKKTRIIPRHLQLAIRNDEELNKLL 98
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone
complex, intrinsically unfolded protein,
chaperone/structural protein complex; NMR {Saccharomyces
cerevisiae} SCOP: a.22.1.1 a.22.1.1
Length = 192
Score = 59.0 bits (141), Expect = 6e-10
Identities = 32/178 (17%), Positives = 72/178 (40%), Gaps = 19/178 (10%)
Query: 29 KGTLVSSLHSILKQVHNSLDINTDALYYTEKLILKLLNLLC---------SKPLPLTTSD 79
K T S ++ +LKQ H I+ ++ + + + +K ++ +
Sbjct: 2 KETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISARE 61
Query: 80 MEGKIKKYFPNPISEWTFNEAKQALEKGKKKSSLVISIDRVQNILQKEF----------Y 129
++ ++ P +++ +E +A+ K + S R
Sbjct: 62 IQTAVRLILPGELAKHAVSEGTRAVTKYSSSTQAQSSSARAGLQFPVGRIKRYLKRHATG 121
Query: 130 FRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMYADKALLELF 187
+V + +Y AVL+Y+ A++L+L GN K+++ I+ + + +A+ D L L
Sbjct: 122 RTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDDELDSLI 179
>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR
{Homo sapiens} SCOP: a.87.1.1
Length = 209
Score = 57.3 bits (139), Expect = 3e-09
Identities = 18/95 (18%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Query: 209 HYEQVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCL 268
+Y V+ + + E + +EL+ +L + L L + L +EEI + L
Sbjct: 13 YYNVVLQNILETENEYSKELQTVLSTYLRPLQTSEKLSS-ANISYLMGNLEEICSFQQML 71
Query: 269 LGAVEDISEMSSDDHCIGSCFEEFAEDAEFDVYEK 303
+ ++E+ +++ +G CF +Y
Sbjct: 72 VQSLEECTKLPEAQQRVGGCFLNLMPQM-KTLYLT 105
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange
factor, autoinhibition, domain-swapped, cell junction,
cell project endocytosis; 2.40A {Mus musculus} PDB:
3gf9_A
Length = 283
Score = 50.5 bits (121), Expect = 1e-06
Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 212 QVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCLLGA 271
+++ + E+ ++ +L+L+ +IF + L + L E KEV +F +E+ + LL A
Sbjct: 85 GYIHELIVTEENYVNDLQLVTEIFQKPLTESELLTE-KEVAMIFVNWKELIMCNIKLLKA 143
Query: 272 VEDISEMSSDD---HCIGSCFEEFAEDAEFDVY 301
+ +MS + IG Y
Sbjct: 144 LRVRKKMSGEKMPVKMIGDILSAQLP--HMQPY 174
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase,
GTP-binding protein,, signaling protein; HET: GNP; 2.00A
{Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
Length = 113
Score = 46.0 bits (109), Expect = 4e-06
Identities = 14/108 (12%), Positives = 40/108 (37%), Gaps = 13/108 (12%)
Query: 443 EFYREDTLMKYDGKSNRLTERKVYF-FDGVLILCKSNKKISVTVPINVVSSQYEFKCKEM 501
L++Y+ +R F + L++ + ++ +
Sbjct: 7 YLVYNGDLVEYEADHMAQLQRVHGFLMNDCLLVATWLP-----------QRRGMYRYNAL 55
Query: 502 YFLRKVEINDYENTDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDL 549
Y L ++ + + ++ +K+ F++ + S I ++ + K+ W L
Sbjct: 56 YPLDRLAVVNVKDNPPMKDMFKLLMFPE-SRIFQAENAKIKREWLEVL 102
>1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal
transduction, signaling protein; NMR {Caenorhabditis
elegans} SCOP: b.55.1.1
Length = 119
Score = 39.9 bits (93), Expect = 5e-04
Identities = 22/115 (19%), Positives = 39/115 (33%), Gaps = 20/115 (17%)
Query: 441 LEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKE 500
L R D ++G R V+ F ++ + + S + P +
Sbjct: 7 LGRIIRHDAFQVWEGDE-PPKLRYVFLFRNKIMFTE--QDASTSPPS--------YTHYS 55
Query: 501 MYFLRKVEINDYENTDDIKNAFEIAPRD--QPSIIIVTKSPED----KKSWFSDL 549
L K I + +D + P++ PS I K E +K+W D+
Sbjct: 56 SIRLDKYNIRQHTTDED---TIVLQPQEPGLPSFRIKPKDFETSEYVRKAWLRDI 107
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo
sapiens}
Length = 185
Score = 35.8 bits (82), Expect = 0.036
Identities = 22/180 (12%), Positives = 62/180 (34%), Gaps = 16/180 (8%)
Query: 370 TDSSKDKECLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKNV 429
D+ ++E L Q+ L+ + + K A R+ + + + +
Sbjct: 4 KDNEVEQEDLAQSLSLV-------KDVIGAVDSKVASYEKKVRLNEIYTKTDSKSIMRMK 56
Query: 430 DGVDVRDLRPYLEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINV 489
G ++ R+ ++ + RL E + +L+ + + + ++
Sbjct: 57 SGQMFAKEDLKRKKLVRDGSVFL-KNAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQ 115
Query: 490 VSSQYEFKCKEMYFLRKVEINDYENTDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDL 549
S+ + L+K+ + + + + + D + + S E++ SW +
Sbjct: 116 KST--------VISLKKLIVREVAHEEKGLFLISMGMTDPEMVEVHASSKEERNSWIQII 167
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel
beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo
sapiens} PDB: 3via_A 2dhi_A
Length = 112
Score = 31.4 bits (71), Expect = 0.40
Identities = 17/108 (15%), Positives = 37/108 (34%), Gaps = 10/108 (9%)
Query: 450 LMKYDGKSNRLTERKVYFF---DGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRK 506
L++ R + +F DG LI + ++ +++ C + ++
Sbjct: 11 LLRQSTILKRWKKN--WFDLWSDGHLIYYDDQTRQNIEDKVHMPMD-----CINIRTGQE 63
Query: 507 VEINDYENTDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVNT 554
+ +I RD +I + +S +D +W L T
Sbjct: 64 CRDTQPPDGKSKDCMLQIVCRDGKTISLCAESTDDCLAWKFTLQDSRT 111
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex,
pleckstrin homology domain, ligand binding protein; HET:
I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Length = 129
Score = 31.0 bits (70), Expect = 0.90
Identities = 11/97 (11%), Positives = 27/97 (27%), Gaps = 6/97 (6%)
Query: 455 GKSNRLTERKVYFF--DGVLILCKSNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDY 512
G+ R + L+ + + + S+ E LR +
Sbjct: 27 GRKLRKNWGPSWVVLTGNSLVFYREPPPTAPSSGWGPAGSRPE----SSVDLRGAALAHG 82
Query: 513 ENTDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDL 549
+ +N I ++ + + ++W L
Sbjct: 83 RHLSSRRNVLHIRTIPGHEFLLQSDHETELRAWHRAL 119
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA,
SKIP, complex, virulence, cytoplasm, membrane,
polymorphism, signaling protein; 2.60A {Homo sapiens}
PDB: 3hw2_B
Length = 112
Score = 30.1 bits (68), Expect = 1.4
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 492 SQYEFKCKEMYFLRKVEINDYENTDDI--KNAFEIAPRDQPSIIIVTKSPEDKKSW 545
+ + + + + +AF++ D+P + + +S + W
Sbjct: 37 DRTDVIPLLSVNMGGEQCGGCRRANTTDRPHAFQVILSDRPCLELSAESEAEMAEW 92
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH
domain, phret1, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 130
Score = 29.9 bits (67), Expect = 1.7
Identities = 17/115 (14%), Positives = 41/115 (35%), Gaps = 20/115 (17%)
Query: 450 LMKYDGKSNRLTERKVYFF----DGVLILCKS----NKKISVTVPINVVSSQYEFKCKEM 501
L + +S+ L K +F DG L +++ V + NV + +C+++
Sbjct: 14 LWR---QSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVVIHFNVRDIKVGQECQDV 70
Query: 502 YFLRKVEINDYENTDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVNTKS 556
+ R+ + + ++ +D +W + L+ N+
Sbjct: 71 QP---------PEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALMEANSTP 116
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain,
pleckstrin homology domain-containing protein family A
member 5; NMR {Homo sapiens}
Length = 128
Score = 29.7 bits (67), Expect = 2.1
Identities = 7/47 (14%), Positives = 21/47 (44%)
Query: 506 KVEINDYENTDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMV 552
++ + E+ + K AF+ A + + T + ++ + W ++
Sbjct: 71 QIALLTSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDA 117
>2do9_A NALP10, nacht-, LRR- and PYD-containing protein 10; apoptosis,
inflammation, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 115
Score = 29.4 bits (66), Expect = 2.4
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 900 LQKVLEDARELNGDHFKKYQEKLRNINPPCIP 931
L L D L + FK + LR++ +
Sbjct: 20 LLWALND---LEENSFKTLKFHLRDVTQFHLA 48
>3pj0_A LMO0305 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-biology,
lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Length = 359
Score = 30.8 bits (70), Expect = 2.6
Identities = 10/72 (13%), Positives = 21/72 (29%), Gaps = 14/72 (19%)
Query: 133 VETNMVLYYAAVLDYVAADLL---------KLVGNYVKNIRKV---DISIQDIDVAMYAD 180
+NM Y +L + G + V ++S+ D + A
Sbjct: 287 PVSNMFHVYFENSADEIGAILTKIQDETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAK 346
Query: 181 --KALLELFFQE 190
+ + +E
Sbjct: 347 NLELVFRCLEKE 358
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual
dimerization induced by V derived sequence, signaling
protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Length = 148
Score = 29.5 bits (66), Expect = 3.4
Identities = 13/93 (13%), Positives = 27/93 (29%), Gaps = 3/93 (3%)
Query: 492 SQYEFKCKEMYFLRKVEINDYENTDDI---KNAFEIAPRDQPSIIIVTKSPEDKKSWFSD 548
S + + K + + ++ FEI D+ SP+D + W
Sbjct: 54 SDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQ 113
Query: 549 LIMVNTKSMLERTLDSIILDEEKKHPLRMPSPE 581
L + + + E + P+
Sbjct: 114 LKFILQDLGSDVIPEDDEERGELYDDVDHPAAV 146
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'-
phosphate, calcium binding site, structural genomics,
PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP:
c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Length = 347
Score = 30.0 bits (68), Expect = 4.1
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 11/64 (17%)
Query: 133 VETNMVLYYAAVLDYVAADLL--------KLVGNYVKNIRKV---DISIQDIDVAMYADK 181
V+TNMV+ L A + IR V D+S DI+ A+ +
Sbjct: 281 VKTNMVILRTDNLKVNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFE 340
Query: 182 ALLE 185
L
Sbjct: 341 KLFR 344
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain,
zizimin1, structural genomics, riken structural
genomics/proteomics initiative; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 150
Score = 29.2 bits (65), Expect = 4.5
Identities = 11/65 (16%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 513 ENTDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDL---IMVNTKSMLERTLDSIILDE 569
+N + AFE+ +D+ S ++ S + + W + L + +N ++ ++ + ++
Sbjct: 83 QNNKVRRFAFELKMQDKSSYLLAADSEVEMEEWITILNKILQLNFEAAMQEKRNGDSHED 142
Query: 570 EKKHP 574
++ P
Sbjct: 143 DESGP 147
>2j44_A SPNDX, alkaline amylopullulanase; virulence, glycogen binding,
carbohydrate-binding module; HET: GLC; 2.1A
{Streptococcus pneumoniae} SCOP: b.3.1.3 b.3.1.3
Length = 217
Score = 29.7 bits (66), Expect = 4.9
Identities = 12/59 (20%), Positives = 26/59 (44%)
Query: 141 YAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMYADKALLELFFQEDDDPVYLEP 199
Y +D + + G + + K D+ I+ + K ++F ++DD+ +Y P
Sbjct: 154 YGRYIDIPLNEAAREFGFLLLDESKGDVKIRKENYKFTDLKNHSQIFLKDDDESIYTNP 212
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 8.8
Identities = 8/36 (22%), Positives = 12/36 (33%), Gaps = 17/36 (47%)
Query: 58 EKLILKLLNLLCSKPLPLTTSDMEGKIKKYFPN--P 91
EK LK K ++ +K Y + P
Sbjct: 18 EKQALK-------K--------LQASLKLYADDSAP 38
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH
domain, signaling protein; 2.60A {Mus musculus} SCOP:
b.55.1.1 PDB: 2otx_A
Length = 211
Score = 28.6 bits (63), Expect = 9.6
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 492 SQYEFKCKEMYFLRKVEINDYENTDDI---KNAFEIAPRDQPSIIIVTKSPEDKKSWFSD 548
S + + K + + ++ FEI D+ SP+D + W
Sbjct: 143 SDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQ 202
Query: 549 L 549
L
Sbjct: 203 L 203
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.399
Gapped
Lambda K H
0.267 0.0506 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 17,233,795
Number of extensions: 1086388
Number of successful extensions: 2292
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2182
Number of HSP's successfully gapped: 78
Length of query: 1108
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 1004
Effective length of database: 3,798,009
Effective search space: 3813201036
Effective search space used: 3813201036
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.6 bits)