RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17173
(1108 letters)
>d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 481
Score = 407 bits (1047), Expect = e-132
Identities = 257/482 (53%), Positives = 344/482 (71%), Gaps = 10/482 (2%)
Query: 575 LRMPSPEYYSFAEPDSCENIILEEK--QNTNMPLIKGATLHKLIERLTYHIYADPAFIGT 632
+R+PS + Y FAEPDS ENII EE +P+IK T+ KLIERLTYH+YADP F+ T
Sbjct: 2 MRLPSADVYRFAEPDSEENIIFEENMQPKAGIPIIKAGTVIKLIERLTYHMYADPNFVRT 61
Query: 633 FLTTYRSFTTPTELLDLLIDRFNVPDPNKVFENNNADIE-ESILREDIIRYKKELCQPVQ 691
FLTTYRSF P ELL L+I+RF +P+P + A + L ++ R++KE QPVQ
Sbjct: 62 FLTTYRSFCKPQELLSLIIERFEIPEPEPTEADRIAIENGDQPLSAELKRFRKEYIQPVQ 121
Query: 692 FRVLNVFRQWVQHHFYDFQRDQNLLEKLKSFLLNEISGKSLRKWADIVLNLIQRKELDLE 751
RVLNV R WV+HHFYDF+RD LL++++ F+ + GK+++KW + + +IQRK++ +
Sbjct: 122 LRVLNVCRHWVEHHFYDFERDAYLLQRMEEFI-GTVRGKAMKKWVESITKIIQRKKIARD 180
Query: 752 --KEITFAFNNSPPPIEVHVPINS-IDEFNILIAHPVEIARQLTLLEFDYFRSVKPSELV 808
F +SPP +E H+ I+ F++L HP+EIARQLTLLE D +R+V+PSELV
Sbjct: 181 NGPGHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESDLYRAVQPSELV 240
Query: 809 GSVWTKKNKAEYSPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKL 868
GSVWTK++K SPNL+K+++HTTN T W EK IVE EN +ER+A+++RIIE++ V Q+L
Sbjct: 241 GSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQEL 300
Query: 869 NNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDARELNGDHFKKYQEKLRNINPP 928
NNFNGVL V SAM S+ VYRL TF+ +P+R +K+LE+A EL+ DH+KKY KLR+INPP
Sbjct: 301 NNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSEDHYKKYLAKLRSINPP 360
Query: 929 CIPFFGMYLTNILHIEEGNPDFLPDS--KLINFTKRRKVAEIISEIQQYQNEPYCLSVVP 986
C+PFFG+YLTNIL EEGNP+ L +LINF+KRRKVAEI EIQQYQN+PYCL V
Sbjct: 361 CVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQNQPYCLRVES 420
Query: 987 IYREFFENLSPFEGIDDNEMCNILFEQSLLIEPRHATHVPKFPRKWPNISLKSPLVKIKK 1046
+ FFENL+P + E + LF +SL IEPR+ +P+FP+K+ + LKSP V+
Sbjct: 421 DIKRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRNPKPLPRFPKKY-SYPLKSPGVRPSN 479
Query: 1047 TR 1048
R
Sbjct: 480 PR 481
>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 172
Score = 145 bits (368), Expect = 1e-40
Identities = 74/170 (43%), Positives = 117/170 (68%), Gaps = 2/170 (1%)
Query: 18 DFHEAYNENRWKGTLVSSLHSILKQVHNSLDINTDALYYTEKLILKLLNLLCSKPLPLTT 77
+F N +W+G LV +L + QVH +L+ N DAL Y E+LIL+LLN+LC P +
Sbjct: 4 EFFSEENAPKWRGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNMLCQAQ-PRSA 62
Query: 78 SDMEGKIKKYFPNPISEWTFNEAKQALEKGKKKSSLVISIDRVQNILQKEFYFRKVETNM 137
SD+E +++K FP+PI +W +A+ A+EK K+++ L + ++++ +L KE K++ +
Sbjct: 63 SDVEERVQKSFPHPIDKWAIADAQSAIEKRKRRNPLSLPVEKIHPLL-KEVLGYKIDHQV 121
Query: 138 VLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMYADKALLELF 187
+Y AVL+Y++AD+LKL GNYV+NIR +I+ QDI VAM ADK L+++F
Sbjct: 122 SVYIVAVLEYISADILKLAGNYVRNIRHYEITKQDIKVAMCADKVLMDMF 171
>d1dbha1 a.87.1.1 (A:198-404) Son of sevenless-1 (sos-1) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 98.7 bits (245), Expect = 7e-24
Identities = 74/198 (37%), Positives = 111/198 (56%), Gaps = 3/198 (1%)
Query: 210 YEQVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCLL 269
Y +V F+AE + +IREL LI+K+F E + L +V ++F I +I+ L+V LL
Sbjct: 4 YYDLVKAFMAEIRQYIRELNLIIKVFREPFVSNSKLFSANDVENIFSRIVDIHELSVKLL 63
Query: 270 GAVEDISEMSSDD---HCIGSCFEEFAEDAEFDVYEKLLHNIVNQKSIEVLSMHVTQPSI 326
G +ED EM+ + +GSCFE+ AE+ FD YE +I+ + +++P
Sbjct: 64 GHIEDTVEMTDEGSPHPLVGSCFEDLAEELAFDPYESYARDILRPGFHDRFLSQLSKPGA 123
Query: 327 LNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYIKIFHSLTDSSKDKECLEQAQGLL 386
LQ G GFKE V+Y LP LL++P+YHC YFE +K ++ +DKECL+QA L
Sbjct: 124 ALYLQSIGEGFKEAVQYVLPRLLLAPVYHCLHYFELLKQLEEKSEDQEDKECLKQAITAL 183
Query: 387 APLQISLSKISLEKNGKN 404
+Q + KI + K
Sbjct: 184 LNVQSGMEKICSKSLAKR 201
>d1dbha2 b.55.1.1 (A:418-550) Son of sevenless-1 (sos-1) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 83.6 bits (206), Expect = 2e-19
Identities = 51/141 (36%), Positives = 86/141 (60%), Gaps = 8/141 (5%)
Query: 418 SLEKIHELKKNVDGVDVRDLRPYLEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKS 477
+++K++E++KN+DG + +D+ EF E TL + K ER ++ FDG++I CKS
Sbjct: 1 AIKKMNEIQKNIDGWEGKDIGQCCNEFIMEGTLTRVGAK----HERHIFLFDGLMICCKS 56
Query: 478 NKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNAFEIAPRDQPSIIIVTK 537
N + E++ KE +F+RKV+IND ++T++ K+AFEI +D+ S+I K
Sbjct: 57 NHGQPRLPGAS----NAEYRLKEKFFMRKVQINDKDDTNEYKHAFEIILKDENSVIFSAK 112
Query: 538 SPEDKKSWFSDLIMVNTKSML 558
S E+K +W + LI + +S L
Sbjct: 113 SAEEKNNWMAALISLQYRSTL 133
>d2dfka2 b.55.1.1 (A:240-401) Rho guanine nucleotide exchange factor
9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 162
Score = 64.4 bits (156), Expect = 2e-12
Identities = 24/165 (14%), Positives = 55/165 (33%), Gaps = 16/165 (9%)
Query: 418 SLEKIHELKKNVDGVDVRDLRPYLEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKS 477
+++KI + + +V + D+ E + R +R + FD ++LCK
Sbjct: 1 NIDKIAQWQASVLDWEGDDILDRSSELIYTGEMAWIYQPYGRNQQRVFFLFDHQMVLCKK 60
Query: 478 NKKISVTVPINVVSSQYEFK----CKEMYFLRKVEINDYENTDDIKNAFEIAPRDQPSII 533
+ +K + + + D + +KNAF++ ++ +
Sbjct: 61 DLIRR---------DILYYKGRIDMDKYEVIDIEDGRDDDFNVSMKNAFKLHNKETEEVH 111
Query: 534 IV-TKSPEDKKSWFSDLIMVNTKSMLERTLDSIILDEEKKHPLRM 577
+ K E+K W + M++ E +
Sbjct: 112 LFFAKKLEEKIRWLRAFR--EERKMVQEDEKIGFEISENQKRQAA 154
>d1f5xa_ a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [TaxId:
10090]}
Length = 208
Score = 65.1 bits (158), Expect = 2e-12
Identities = 32/197 (16%), Positives = 69/197 (35%), Gaps = 8/197 (4%)
Query: 190 EDDDPVYLEPQVQSNNVVLHYEQVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIK 249
ED + P + + E+ + L I + F + L + ++++
Sbjct: 8 EDLMRLESVPTPPKMTEYDKRCCCLREIQQTEEKYTDTLGSIQQHFMKPLQRFLKPQDME 67
Query: 250 EVHSLFEIIEEIYNLTVCLLGAVEDISEMSSDDHCIGSCFEEFAEDAEFDVYEKLLHNIV 309
+F IEE++++ L ++D + F ++ E F VY + +
Sbjct: 68 T---IFVNIEELFSVHTHFLKELKDALA-GPGATTLYQVFIKYKER--FLVYGRYCSQV- 120
Query: 310 NQKSIEVLSMHVTQPSILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYIKIFHSL 369
+ + + L T + ++ L +LLM P+ Y ++
Sbjct: 121 -ESASKHLDQVATAREDVQMKLEECSQRANNGRFTLRDLLMVPMQRVLKYHLLLQELVKH 179
Query: 370 TDSSKDKECLEQAQGLL 386
T + +KE L A +
Sbjct: 180 TQDATEKENLRLALDAM 196
>d1by1a_ a.87.1.1 (A:) beta-pix {Human (Homo sapiens) [TaxId: 9606]}
Length = 209
Score = 64.7 bits (157), Expect = 3e-12
Identities = 30/175 (17%), Positives = 66/175 (37%), Gaps = 9/175 (5%)
Query: 209 HYEQVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCL 268
+Y V+ + + E + +EL+ +L + L L + L +EEI + L
Sbjct: 13 YYNVVLQNILETENEYSKELQTVLSTYLRPLQTSEKLSS-ANISYLMGNLEEICSFQQML 71
Query: 269 LGAVEDISEMSSDDHCIGSCFEEFAEDAEFDVYEKLLHNIVNQKSIEVLSMHVTQPSILN 328
+ ++E+ +++ +G CF +Y N + ++ VL+ H +
Sbjct: 72 VQSLEECTKLPEAQQRVGGCFLNLMPQM-KTLYLTYCAN--HPSAVNVLTEHSEE----L 124
Query: 329 TLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYIK-IFHSLTDSSKDKECLEQA 382
G L L P + Y +K + + D D++ ++++
Sbjct: 125 GEFMETKGASSPGILVLTTGLSKPFMRLDKYPTLLKELERHMEDYHTDRQDIQKS 179
>d1txda1 a.87.1.1 (A:766-999) Rho guanine nucleotide exchange factor
12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]}
Length = 234
Score = 65.2 bits (158), Expect = 3e-12
Identities = 30/214 (14%), Positives = 83/214 (38%), Gaps = 15/214 (7%)
Query: 212 QVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCLLGA 271
+V+N+ E+ +R LK++ ++FY+ +++ L E+ +F +E+I L + L
Sbjct: 25 EVINELFYTERAHVRTLKVLDQVFYQRVSREGILSP-SELRKIFSNLEDILQLHIGLNEQ 83
Query: 272 VEDISEMSSDDHC--IGSCFEEFAEDAEFDVYEKLLHNIVNQ--KSIEVLSMHVTQPSIL 327
++ + + + IG + + + + ++E++ + S
Sbjct: 84 MKAVRKRNETSVIDQIGEDLLTWFSGPGEEKLKHAAATFCSNQPFALEMIKSRQKKDSRF 143
Query: 328 NTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYIKIFHSLTDSSKDKECLEQAQGLLA 387
T C + L +++ + + Y + T+ ++E +++A
Sbjct: 144 QTFVQDAESNPLCRRLQLKDIIPTQMQRLTKYPLLLDNIAKYTEWPTEREKVKKA---AD 200
Query: 388 PLQISLSKISLEKNGKNACVRNYNRVKHLQSLEK 421
+ L+ + N V+ + L+ ++
Sbjct: 201 HCRQILNFV-------NQAVKEAENKQRLEDYQR 227
>d1xcga1 a.87.1.1 (A:714-941) Rho guanine nucleotide exchange factor
11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]}
Length = 228
Score = 64.1 bits (155), Expect = 7e-12
Identities = 31/222 (13%), Positives = 79/222 (35%), Gaps = 20/222 (9%)
Query: 212 QVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCLLGA 271
+V+N+ E +R L+++ IFY+ + K + +E+ LF + E+ + A
Sbjct: 24 EVINELFVTEASHLRTLRVLDLIFYQRMKKENLMPR-EELARLFPNLPELIEIHNSWCEA 82
Query: 272 VEDISEMSSDDHCIGSCFEEFAEDAEFDVYEKLLHNIVNQ--KSIEVLSMHVTQPSILNT 329
++ + E I + + +++ + ++E++ + S
Sbjct: 83 MKKLREEGPIIKEISDLMLARFDGPAREELQQVAAQFCSYQSIALELIKTKQRKESRFQL 142
Query: 330 LQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYIK-IFHSLTDSSKDKECLEQAQGLLAP 388
+C + L +L++S + Y ++ I + + E L +A+
Sbjct: 143 FMQEAESHPQCRRLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEHEKLCRARDQC-- 200
Query: 389 LQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKNVD 430
+ VK ++ ++ +K +D
Sbjct: 201 --------------REILKYVNEAVKQTENRHRLEGYQKRLD 228
>d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus),
erythrocytes [TaxId: 9031]}
Length = 106
Score = 59.1 bits (143), Expect = 3e-11
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 106 KGKKKSS---LVISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKN 162
K K +SS L + RV +L+K Y +V +Y AAVL+Y+ A++L+L GN ++
Sbjct: 1 KAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARD 60
Query: 163 IRKVDISIQDIDVAMYADKALLELF 187
+K I + + +A+ D+ L +L
Sbjct: 61 NKKTRIIPRHLQLAIRNDEELNKLL 85
>d1v61a_ b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 132
Score = 58.6 bits (141), Expect = 8e-11
Identities = 18/126 (14%), Positives = 41/126 (32%), Gaps = 13/126 (10%)
Query: 424 ELKKNVDGVDVRDLRPYLEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISV 483
L + + + D++ + ++ G ER F VLI+ ++ +
Sbjct: 9 ILSEPIQAWEGDDIKTLGNVIF-MSQVVMQHGACEEKEERYFLLFSSVLIMLSASPR--- 64
Query: 484 TVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNAFEIAPRDQPSIIIVTKSPEDKK 543
F + + + +N + + FEI I++ + +D +
Sbjct: 65 ---------MSGFMYQGKIPIAGMVVNRLDEIEGSDCMFEITGSTVERIVVHCNNNQDFQ 115
Query: 544 SWFSDL 549
W L
Sbjct: 116 EWMEQL 121
>d1ki1b1 a.87.1.1 (B:1229-1438) GEF of intersectin {Human (Homo
sapiens) [TaxId: 9606]}
Length = 210
Score = 59.0 bits (142), Expect = 3e-10
Identities = 33/209 (15%), Positives = 76/209 (36%), Gaps = 12/209 (5%)
Query: 212 QVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCLLGA 271
+++ + E+ ++ +L+L+ +IF + L + L E KEV +F +E+ + LL A
Sbjct: 12 GYIHELIVTEENYVNDLQLVTEIFQKPLMESELLTE-KEVAMIFVNWKELIMCNIKLLKA 70
Query: 272 VEDISEMSSDDHCIGSCFEEFAEDAE-FDVYEKLLHNIVNQKSIEVLSMHVTQPSILNTL 330
+ +MS + + + + Y + ++ +
Sbjct: 71 LRVRKKMSGEKMPVKMIGDILSAQLPHMQPYIRFCSR--QLNGAALIQQKTDEAPDFKEF 128
Query: 331 QFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYIK-IFHSLTDSSKDKECLEQAQGLLAPL 389
C L + ++ P+ Y IK I + ++ D L+ A
Sbjct: 129 VKRLEMDPRCKGMPLSSFILKPMQRVTRYPLIIKNILENTPENHPDHSHLKHALEK---- 184
Query: 390 QISLSKISLEKNGKNACVRNYNRVKHLQS 418
++ + N N +R++ +Q+
Sbjct: 185 ---AEELCSQVNEGVREKENSDRLEWIQA 210
>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 54.4 bits (131), Expect = 1e-09
Identities = 19/79 (24%), Positives = 44/79 (55%)
Query: 109 KKSSLVISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDI 168
K+ ++ + R+ ++K ++ +Y AAVL+Y+ A++L+L N ++ +K +
Sbjct: 6 AKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRV 65
Query: 169 SIQDIDVAMYADKALLELF 187
+ + I +A+ D+ L +L
Sbjct: 66 TPRHILLAVANDEELNQLL 84
>d2dfka1 a.87.1.1 (A:37-239) Rho guanine nucleotide exchange factor
9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 203
Score = 56.7 bits (136), Expect = 2e-09
Identities = 29/177 (16%), Positives = 67/177 (37%), Gaps = 7/177 (3%)
Query: 212 QVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCLLGA 271
V+N+ ++ E+ +I+ LK I + + ++ K + +++ +F IE+IY + +
Sbjct: 17 NVINEIMSTERHYIKHLKDICEGYLKQCRKRRDMFSDEQLKVIFGNIEDIYRFQMGFVRD 76
Query: 272 VEDISEMSSDD-HCIGSCFEEFAEDAEFDVYEKLLHNIVNQKSIEVLSMHVTQPSILNTL 330
+E IG CF E + F +Y + N + + + S
Sbjct: 77 LEKQYNNDDPHLSEIGPCFLEHQD--GFWIYSEY---CNNHLDACMELSKLMKDSRYQHF 131
Query: 331 QFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYIK-IFHSLTDSSKDKECLEQAQGLL 386
A ++ + + L++P+ Y + + D + A ++
Sbjct: 132 FEACRLLQQMIDIAIDGFLLTPVQKICKYPLQLAELLKYTAQDHSDYRYVAAALAVM 188
>d1ntya2 b.55.1.1 (A:1415-1535) Triple functional domain protein
TRIO {Human (Homo sapiens) [TaxId: 9606]}
Length = 121
Score = 53.8 bits (129), Expect = 3e-09
Identities = 22/125 (17%), Positives = 48/125 (38%), Gaps = 21/125 (16%)
Query: 443 EFYREDTLMKYDGKSNR--LTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKE 500
E +++ +D K+ ER ++ F+ L+ K + S + ++ K
Sbjct: 12 ELILQESFQVWDPKTLIRKGRERHLFLFEMSLVFSK---------EVKDSSGRSKYLYKS 62
Query: 501 MYFLRKVEINDYENTDDIKNAFEIAPRDQP----SIIIVTKSPEDKKSWFSDLIMVNTKS 556
F ++ + E+ + F + P I++ S E+K+ W + +
Sbjct: 63 KLFTSELGVT--EHVEGDPCKFALWVGRTPTSDNKIVLKASSIENKQDWIKHI----REV 116
Query: 557 MLERT 561
+ ERT
Sbjct: 117 IQERT 121
>d1foea1 a.87.1.1 (A:1034-1239) GEF of TIAM1 (T-Lymphoma invasion
and metastasis inducing protein 1) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 206
Score = 55.9 bits (134), Expect = 3e-09
Identities = 36/189 (19%), Positives = 75/189 (39%), Gaps = 21/189 (11%)
Query: 212 QVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLFEIIEEIYNLTVCLLGA 271
+V+ + + E+ ++++L +++ + + L K T L + E+ LF + E+ V L
Sbjct: 10 KVICELLETERTYVKDLNCLMERYLKPLQKETFLTQ-DELDVLFGNLTEMVEFQVEFLKT 68
Query: 272 VEDISEMSSDDH-------------CIGSCFEEFAEDAEFDVYEKLLHNIVNQKSIEVLS 318
+ED + D +G F +A+ F +Y + K +VL
Sbjct: 69 LEDGVRLVPDLEKLEKVDQFKKVLFSLGGSFLYYAD--RFKLYSAFCASH--TKVPKVLV 124
Query: 319 MHVTQPSILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYIKIFHSLTD-SSKDKE 377
T + L ++ L + L+ P+ Y ++ +LTD S++
Sbjct: 125 KAKTDTAFKAFLDA--QNPRQQHSSTLESYLIKPIQRVLKYPLLLRELFALTDAESEEHY 182
Query: 378 CLEQAQGLL 386
L+ A +
Sbjct: 183 HLDVAIKTM 191
>d1kz7a1 a.87.1.1 (A:624-818) Dbl's big sister, Dbs {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 195
Score = 55.5 bits (133), Expect = 4e-09
Identities = 36/177 (20%), Positives = 69/177 (38%), Gaps = 17/177 (9%)
Query: 211 EQVVNDFVAEEKLFIRELKLILKIFYEELNK-----ITPLKEIKEVHSLFEIIEEIYNLT 265
V+N+ + E+ ++ EL +L+ + E++ + + + LF +EEIY+
Sbjct: 11 RHVMNELLDTERAYVEELLCVLEGYAAEMDNPLMAHLISTGLQNKKNILFGNMEEIYHFH 70
Query: 266 VCLLGAVEDISEMSSDDHCIGSCFEEFAEDAEFDVYEKLLHNIVNQKSIEVLSMHVTQPS 325
+ + ++ +G CF E E EF +YEK N +S + P
Sbjct: 71 NRI--FLRELESCIDCPELVGRCFLERME--EFQIYEKYCQNK--PRSESLWRQCSDCPF 124
Query: 326 ILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYIKIFHSLTDSSKDKECLEQA 382
+ K K L + L+ P+ Y +K + + E L++A
Sbjct: 125 FQECQK------KLDHKLSLDSYLLKPVQRITKYQLLLKEMLKYSKHCEGAEDLQEA 175
>d1kz7a2 b.55.1.1 (A:819-965) Dbl's big sister, Dbs {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 147
Score = 52.4 bits (125), Expect = 2e-08
Identities = 18/145 (12%), Positives = 44/145 (30%), Gaps = 23/145 (15%)
Query: 443 EFYREDTLMKYDGKSNRLT-----------ERKVYFFDGVLILCKSNKKISVTVPINVVS 491
+ + + + T +R ++ + ++ CK ++
Sbjct: 12 KLLMQGSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVLFCKKREENG-----EGYE 66
Query: 492 SQYEFKCKEMYFLRKVEINDYENTDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIM 551
+ K+ + V I + D K + II +PE K +W + +
Sbjct: 67 KAPSYSYKQSLNMTAVGITENVKGDTKKFEIWY-NAREEVYIIQAPTPEIKAAWVNAI-- 123
Query: 552 VNTKSMLERTLDSIILDEEKKHPLR 576
+ +L L + + + L
Sbjct: 124 ---RKVLTSQLQACR-EASQHRALE 144
>d1xcga2 b.55.1.1 (A:942-1081) Rho guanine nucleotide exchange
factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId:
9606]}
Length = 140
Score = 45.5 bits (107), Expect = 4e-06
Identities = 16/111 (14%), Positives = 35/111 (31%), Gaps = 5/111 (4%)
Query: 443 EFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEMY 502
+ E L K ++ + V + +L+L + + + + + +
Sbjct: 24 KMIHEGPLTWRISK-DKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFS 82
Query: 503 FLRKVEINDYENTDDIKNAFEI----APRDQPSIIIVTKSPEDKKSWFSDL 549
+ K+ + K AF I +V + DK +W L
Sbjct: 83 PVLKLNAVLIRSVATDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELL 133
>d1txda2 b.55.1.1 (A:1020-1133) Rho guanine nucleotide exchange
factor 12 {Human (Homo sapiens), gamma isoform [TaxId:
9606]}
Length = 114
Score = 44.7 bits (105), Expect = 4e-06
Identities = 15/109 (13%), Positives = 38/109 (34%), Gaps = 8/109 (7%)
Query: 446 REDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVV---SSQYEFKCKEMY 502
E L+ + ++ + + +L+L + V + + ++ + +
Sbjct: 3 HEGPLVWKVNR-DKTIDLYTLLLEDILVLLQKQDDRLVLRCHSKILASTADSKHTFSPVI 61
Query: 503 FLRKVEINDYENTDDIKNAFEIAPRDQP--SIIIVTKSPEDKKSWFSDL 549
L V + + D K F I+ D +V ++ +K W +
Sbjct: 62 KLSTVLVR--QVATDNKALFVISMSDNGAQIYELVAQTVSEKTVWQDLI 108
>d1zc3b1 b.55.1.1 (B:171-279) Exocyst complex protein EXO84 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 109
Score = 43.5 bits (102), Expect = 1e-05
Identities = 13/108 (12%), Positives = 40/108 (37%), Gaps = 13/108 (12%)
Query: 443 EFYREDTLMKYDGKSN-RLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYEFKCKEM 501
L++Y+ +L + + L++ + ++ +
Sbjct: 3 YLVYNGDLVEYEADHMAQLQRVHGFLMNDCLLVATWLP-----------QRRGMYRYNAL 51
Query: 502 YFLRKVEINDYENTDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDL 549
Y L ++ + + ++ +K+ F++ + S I ++ + K+ W L
Sbjct: 52 YPLDRLAVVNVKDNPPMKDMFKLLMFPE-SRIFQAENAKIKREWLEVL 98
>d1ki1b2 b.55.1.1 (B:1439-1580) GEF of intersectin {Human (Homo
sapiens) [TaxId: 9606]}
Length = 142
Score = 43.6 bits (102), Expect = 2e-05
Identities = 16/96 (16%), Positives = 38/96 (39%), Gaps = 3/96 (3%)
Query: 456 KSNRLTERKVYFFDGVLILCKSNKKISVTV--PINVVSSQYEFKCKEMYFLRKVEINDYE 513
K+ E + F+ L+L + K + + + S ++ K FL +V +
Sbjct: 33 KAKNNKELYGFLFNDFLLLTQITKPLGSSGTDKVFSPKSNLQYMYKTPIFLNEVLVKLPT 92
Query: 514 NTDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDL 549
+ + F I+ D+ + +S ++ +W +
Sbjct: 93 DPSGDEPIFHISHIDR-VYTLRAESINERTAWVQKI 127
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 66
Score = 28.9 bits (65), Expect = 0.43
Identities = 9/61 (14%), Positives = 23/61 (37%)
Query: 117 IDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVA 176
R++ I+Q + KV + + + L+ LLK ++ ++ +
Sbjct: 5 PARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQC 64
Query: 177 M 177
+
Sbjct: 65 I 65
>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 209
Score = 28.8 bits (63), Expect = 2.9
Identities = 19/174 (10%), Positives = 36/174 (20%), Gaps = 12/174 (6%)
Query: 376 KECLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKNVDGVDVR 435
K+ + + + + + +
Sbjct: 40 KDVKSVYLQEFQDKGDAEDGDEYDDPFAGPADTISLASERYDKDDDGPSDGNQFPPIAAQ 99
Query: 436 DLRPYLEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPINVVSSQYE 495
DL ++ Y E + +R V S+K +
Sbjct: 100 DLPFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVR 159
Query: 496 FKCKEMYFLRKVEINDYENTDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDL 549
+K FEI D+ SP+D + W L
Sbjct: 160 MNNTLRKDGKK------------DCCFEICAPDKRIYQFTAASPKDAEEWVQQL 201
>d1pn5a1 a.77.1.5 (A:59-151) NALP1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 93
Score = 27.0 bits (60), Expect = 3.5
Identities = 9/38 (23%), Positives = 12/38 (31%), Gaps = 7/38 (18%)
Query: 898 TRLQKVLEDARELNGDHFKKYQEKLRNINP----PCIP 931
RL LE L + K++Q L N
Sbjct: 7 GRLACYLE---FLKKEELKEFQLLLANKAHSRSSSGET 41
>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein
APS {Mouse (Mus musculus) [TaxId: 10090]}
Length = 136
Score = 27.5 bits (60), Expect = 5.0
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 519 KNAFEIAPRDQPSIIIVTKSPEDKKSWFSDL 549
N F + + I+ T K SW +D+
Sbjct: 95 DNTFVLKVENGAEYILETIDSLQKHSWVADI 125
>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus
[TaxId: 274]}
Length = 191
Score = 28.0 bits (61), Expect = 5.4
Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 1/77 (1%)
Query: 678 DIIRYKKELCQPVQFRVLNVFRQWVQHHFYDFQRDQNLLEKLKSFLLNEISGKSLRKWAD 737
+I ++ + L V + R E++ + ++ + RK A
Sbjct: 107 EIPLLFEKGWEGRLHGTLLVAAPLEERVRRVMARSGLSREEVLARERAQMPEEEKRKRAT 166
Query: 738 IVLNLIQRKELDLEKEI 754
VL E DLE+ +
Sbjct: 167 WVLENTGSLE-DLERAL 182
>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli
[TaxId: 562]}
Length = 228
Score = 27.8 bits (61), Expect = 7.1
Identities = 17/132 (12%), Positives = 38/132 (28%), Gaps = 4/132 (3%)
Query: 857 RIIEMM--IVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDARELNGDH 914
R E + V + + + S + F ++ R + D
Sbjct: 60 RTEEQLGYAVFAFPMSVGRQWGMGFLLQSN-DKQPSFLWERYKAFFPTAEAKLRAMKPDE 118
Query: 915 FKKYQEKLRN-INPPCIPFFGMYLTNILHIEEGNPDFLPDSKLINFTKRRKVAEIISEIQ 973
F + Q+ + + + GN F K++ K ++
Sbjct: 119 FAQIQQAVITQMLQAPQTLGEEASKLSKDFDRGNMRFDSRDKIVAQIKLLTPQKLADFFH 178
Query: 974 QYQNEPYCLSVV 985
Q EP ++++
Sbjct: 179 QAVVEPQGMAIL 190
>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 268
Score = 27.4 bits (60), Expect = 9.1
Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 2/91 (2%)
Query: 676 REDIIRYKKELCQPVQFRVLNVFRQWVQHHFYDFQRDQNLLEKLKSFLLNEISGK--SLR 733
L + +L ++Q F+ L + L I ++R
Sbjct: 173 MMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLANIGTSVQNVR 232
Query: 734 KWADIVLNLIQRKELDLEKEITFAFNNSPPP 764
+ D + +Q+ DLE + P P
Sbjct: 233 REMDSDIETMQQTIEDLEVASDPLYVPDPDP 263
>d1swxa_ a.224.1.1 (A:) Glycolipid transfer protein, GLTP {Human
(Homo sapiens) [TaxId: 9606]}
Length = 202
Score = 27.2 bits (60), Expect = 9.4
Identities = 10/48 (20%), Positives = 16/48 (33%)
Query: 39 ILKQVHNSLDINTDALYYTEKLILKLLNLLCSKPLPLTTSDMEGKIKK 86
+LK + I T + + L S +D+ G I K
Sbjct: 1 LLKPLPADKQIETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITK 48
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.399
Gapped
Lambda K H
0.267 0.0438 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,284,243
Number of extensions: 218736
Number of successful extensions: 563
Number of sequences better than 10.0: 1
Number of HSP's gapped: 547
Number of HSP's successfully gapped: 45
Length of query: 1108
Length of database: 2,407,596
Length adjustment: 95
Effective length of query: 1013
Effective length of database: 1,103,246
Effective search space: 1117588198
Effective search space used: 1117588198
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)