BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17175
         (285 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1D4U|A Chain A, Interactions Of Human Nucleotide Excision Repair Protein
           Xpa With Rpa70 And Dna: Chemical Shift Mapping And 15n
           Nmr Relaxation Studies
          Length = 111

 Score = 30.0 bits (66), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 1/81 (1%)

Query: 127 CHQHDNAAGVESLFLLNAVLNSWIYKLCTTEDLKPFISFLITSE-WQNQWNHIPNTNKLK 185
           C    +A     L         ++ K C  E  +P + F++      +QW  +    KL+
Sbjct: 29  CDDCRDADDKHKLITKTEAKQEYLLKDCDLEKREPPLKFIVKKNPHHSQWGDMKLYLKLQ 88

Query: 186 VIKPTIEYWSTSNQNKRFQEV 206
           ++K ++E W +    +  +EV
Sbjct: 89  IVKRSLEVWGSQEALEEAKEV 109


>pdb|1XPA|A Chain A, Solution Structure Of The Dna-And Rpa-Binding Domain Of
           The Human Repair Factor Xpa, Nmr, 1 Structure
          Length = 122

 Score = 28.9 bits (63), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 132 NAAGVESLFLLNAVLNSWIYKLCTTEDLKPFISFLITSE-WQNQWNHIPNTNKLKVIKPT 190
           +A     L         ++ K C  E  +P + F++      +QW  +    KL+++K +
Sbjct: 34  DADDKHKLITKTEAKQEYLLKDCDLEKREPPLKFIVKKNPHHSQWGDMKLYLKLQIVKRS 93

Query: 191 IEYWSTSNQNKRFQEV 206
           +E W +    +  +EV
Sbjct: 94  LEVWGSQEALEEAKEV 109


>pdb|2CFA|B Chain B, Structure Of Viral Flavin-Dependant Thymidylate Synthase
           Thyx
          Length = 217

 Score = 28.1 bits (61), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 18/35 (51%)

Query: 249 HVNIRNSLDTPPSLEDNAAGVESLFLYLQRLNLYH 283
           H N +NSLDT P  +      E   LY Q + LY+
Sbjct: 108 HKNRQNSLDTVPEDDQTWWATEQEKLYAQSMELYN 142


>pdb|2CFA|A Chain A, Structure Of Viral Flavin-Dependant Thymidylate Synthase
           Thyx
          Length = 217

 Score = 27.7 bits (60), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 18/35 (51%)

Query: 249 HVNIRNSLDTPPSLEDNAAGVESLFLYLQRLNLYH 283
           H N +NSLDT P  +      E   LY Q + LY+
Sbjct: 108 HKNRQNSLDTVPEDDQTWWATEQEKLYAQSMELYN 142


>pdb|2AIH|A Chain A, 1h-Nmr Solution Structure Of A TrypsinCHYMOTRYPSIN BOWMAN-
           Birk Inhibitor From Lens Culinaris
          Length = 67

 Score = 27.3 bits (59), Expect = 9.1,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 13/43 (30%)

Query: 81  LFTKTDPPLCQCGAALSVRHILSCHTKID--------PPLCQC 115
           L T++ PP C+C   + VR   SCH+  D        PP CQC
Sbjct: 13  LCTRSQPPTCRC---VDVRE--SCHSACDKCVCAYSNPPQCQC 50


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.137    0.444 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,635,617
Number of Sequences: 62578
Number of extensions: 328112
Number of successful extensions: 867
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 863
Number of HSP's gapped (non-prelim): 7
length of query: 285
length of database: 14,973,337
effective HSP length: 98
effective length of query: 187
effective length of database: 8,840,693
effective search space: 1653209591
effective search space used: 1653209591
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)