BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17175
         (285 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8NF99|ZN397_HUMAN Zinc finger protein 397 OS=Homo sapiens GN=ZNF397 PE=1 SV=2
          Length = 534

 Score = 31.6 bits (70), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 48/125 (38%), Gaps = 25/125 (20%)

Query: 30  NEGSSRGLCQYYLKVI----KPTIEYWSTSNQNKRFQEVILTRMRIGHTRL---THNHLF 82
            E S RG+ ++   ++      T E   + +Q   F +VI T   +G   L       L 
Sbjct: 208 QEPSFRGISEHESNLVWKQGSATGEKLRSPSQGGSFSQVIFTNKSLGKRDLYDEAERCLI 267

Query: 83  TKTDPPLCQ-------------CGAALSVRHILSCHTKI----DPPLC-QCGAALSVRHI 124
             TD  +CQ             CG +      L+ H +I     P  C QCG A S+R  
Sbjct: 268 LTTDSIMCQKVPPEERPYRCDVCGHSFKQHSSLTQHQRIHTGEKPYKCNQCGKAFSLRSY 327

Query: 125 LFCHQ 129
           L  HQ
Sbjct: 328 LIIHQ 332


>sp|Q96N58|ZN578_HUMAN Zinc finger protein 578 OS=Homo sapiens GN=ZNF578 PE=2 SV=1
          Length = 365

 Score = 31.6 bits (70), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 8/81 (9%)

Query: 78  HNHLFTKTDPPLC-QCGAALSVRHILS----CHTKIDPPLC-QCGAALSVRHILFCHQHD 131
           H    T   P  C +CG + S +  L+    CHT   P  C +CG + S +  L CH   
Sbjct: 52  HRRCHTSEKPYKCNECGKSFSYKSSLTCHRRCHTGEKPYKCNECGKSFSYKSSLTCHHRC 111

Query: 132 NAAGVESLFLLNAVLNSWIYK 152
           +    E  +  N    S+ YK
Sbjct: 112 HTG--EKPYKCNECGKSFSYK 130


>sp|Q6ZNA1|ZN836_HUMAN Zinc finger protein 836 OS=Homo sapiens GN=ZNF836 PE=2 SV=2
          Length = 936

 Score = 31.6 bits (70), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 6/63 (9%)

Query: 78  HNHLFTKTDPPLC-QCGAALSVRHILSCHTKI----DPPLC-QCGAALSVRHILFCHQHD 131
           H  + T   P +C +CG A  VR IL  H K+     P  C +CG A   R  L  HQ +
Sbjct: 796 HRSIHTGEKPYVCNECGKAFRVRSILVNHQKMHTGDKPYKCNECGKAFIERSKLVYHQRN 855

Query: 132 NAA 134
           +  
Sbjct: 856 HTG 858


>sp|Q09FC8|ZN415_HUMAN Zinc finger protein 415 OS=Homo sapiens GN=ZNF415 PE=2 SV=2
          Length = 603

 Score = 31.6 bits (70), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 6/59 (10%)

Query: 77  THNHLFTKTDPPLC-QCGAALSVRHILS----CHTKIDPPLC-QCGAALSVRHILFCHQ 129
           TH  + T   P  C +CG + SVR  L+     HT   P  C  CG + SVR  LF HQ
Sbjct: 533 THQVIHTGEKPYKCNECGKSFSVRPNLTRHQIIHTGKKPYKCSDCGKSFSVRPNLFRHQ 591


>sp|P15620|ZN271_MOUSE Zinc finger protein 271 OS=Mus musculus GN=Znf271 PE=2 SV=1
          Length = 580

 Score = 31.2 bits (69), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 76  LTHNHLFTKTDPPLCQCGAALSVRHILSCHTKIDP-----PLCQCGAALSVRHILFCHQH 130
           + H  + T   P  C CG A S     + H +I       P  QCG + S R  L  HQ 
Sbjct: 512 IKHQRIHTGEKPYKCMCGKAFSQCSAFTLHQRIHTGEKPYPCAQCGKSFSQRSDLVNHQR 571

Query: 131 DNA 133
            +A
Sbjct: 572 VHA 574


>sp|Q86XN6|ZN761_HUMAN Zinc finger protein 761 OS=Homo sapiens GN=ZNF761 PE=2 SV=2
          Length = 746

 Score = 31.2 bits (69), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 15/74 (20%)

Query: 62  QEVILTRMRIGHTRLTHNHLFTKTDPPLC-QCGAALSVRHILSCHTKI----DPPLC-QC 115
           Q+ ILTR         H+ L T   P  C +CG   S +  L+CH ++     P  C +C
Sbjct: 337 QKSILTR---------HHRLHTGEKPYKCNECGKTFSHKSSLTCHHRLHTGEKPYKCNEC 387

Query: 116 GAALSVRHILFCHQ 129
           G   S +  L CH+
Sbjct: 388 GKTFSHKSSLTCHR 401


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.137    0.444 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,991,289
Number of Sequences: 539616
Number of extensions: 4075880
Number of successful extensions: 11084
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 11052
Number of HSP's gapped (non-prelim): 71
length of query: 285
length of database: 191,569,459
effective HSP length: 116
effective length of query: 169
effective length of database: 128,974,003
effective search space: 21796606507
effective search space used: 21796606507
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)