RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17175
         (285 letters)



>d2fj8a1 g.3.13.1 (A:64-122) Bowman-Birk inhibitor, BBI {Barley
           (Hordeum vulgare) [TaxId: 4513]}
          Length = 59

 Score = 26.3 bits (58), Expect = 0.83
 Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 13/41 (31%)

Query: 83  TKTDPPLCQCGAALSVRHILSCH--------TKIDPPLCQC 115
           T+++PP C+C     V  +  C         ++  P    C
Sbjct: 12  TRSNPPTCRC-----VDEVKKCAPTCKTCLPSRSRPSRRVC 47


>d1c2aa1 g.3.13.1 (A:4-64) Bowman-Birk inhibitor, BBI {Barley
           (Hordeum vulgare) [TaxId: 4513]}
          Length = 61

 Score = 26.3 bits (58), Expect = 0.98
 Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 13/41 (31%)

Query: 83  TKTDPPLCQCGAALSVRHILSCH--------TKIDPPLCQC 115
           T++ PP+C C   +       C         +  DP    C
Sbjct: 13  TRSIPPICTCMDEVF-----ECPKTCKSCGPSMGDPSRRIC 48


>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 53

 Score = 24.6 bits (53), Expect = 3.1
 Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 5/45 (11%)

Query: 90  CQCGAALSVRHILSCHTKIDPPLC-----QCGAALSVRHILFCHQ 129
           CQCG + + +     H  +   L       CG    ++H L  H 
Sbjct: 6   CQCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM 50


>d1pi2a_ g.3.13.1 (A:) Bowman-Birk inhibitor, BBI {Soybean (Glycine
           max), PI-II [TaxId: 3847]}
          Length = 61

 Score = 23.7 bits (51), Expect = 7.1
 Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 13/41 (31%)

Query: 83  TKTDPPLCQCGAALSVRHILSCH--------TKIDPPLCQC 115
           T++ PP C C   ++     SCH        T+  P  C+C
Sbjct: 12  TRSMPPQCSCEDRIN-----SCHSDCKSCMCTRSQPGQCRC 47


>d1df9c_ g.3.13.1 (C:) Bowman-Birk inhibitor, BBI {Mung bean (Vigna
           radiata) [TaxId: 157791]}
          Length = 72

 Score = 24.1 bits (52), Expect = 7.5
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 12/41 (29%)

Query: 83  TKTDPPLCQCGAALSVRHILSCH--------TKIDPPLCQC 115
           TK+ PP C C    ++R + SCH        T+  P  C+C
Sbjct: 19  TKSIPPQCHC---ANIR-LNSCHSACKSCICTRSMPGKCRC 55


>d1pbia_ g.3.13.1 (A:) Bowman-Birk inhibitor, BBI {Winter pea (Pisum
           sativum) [TaxId: 3888]}
          Length = 68

 Score = 23.7 bits (51), Expect = 9.7
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 13/41 (31%)

Query: 83  TKTDPPLCQCGAALSVRHILSCH--------TKIDPPLCQC 115
           TK++PP C+C   + V    +CH           +PP CQC
Sbjct: 11  TKSNPPTCRC---VDVGE--TCHSACLSCICAYSNPPKCQC 46


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.137    0.444 

Gapped
Lambda     K      H
   0.267   0.0617    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,083,034
Number of extensions: 48183
Number of successful extensions: 163
Number of sequences better than 10.0: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 16
Length of query: 285
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 201
Effective length of database: 1,254,276
Effective search space: 252109476
Effective search space used: 252109476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.1 bits)