BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17177
         (105 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3K60|A Chain A, Crystal Structure Of N-Terminal Domain Of Plasmodium
           Falciparum Hsp90 (Pf07_0029) Bound To Adp
 pdb|3K60|B Chain B, Crystal Structure Of N-Terminal Domain Of Plasmodium
           Falciparum Hsp90 (Pf07_0029) Bound To Adp
          Length = 223

 Score = 31.2 bits (69), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 13/47 (27%), Positives = 29/47 (61%)

Query: 17  LRKDYARYSKDEEVDDMIHWFSIFNSFMMVIFLERDLGDEYGWKQVH 63
           L++D   Y +++ + D++   S F SF + ++ ER  G E+ W++++
Sbjct: 177 LKEDQLEYLEEKRIKDLVKKHSEFISFPIKLYCERGGGVEHEWEELN 223


>pdb|3QNQ|A Chain A, Crystal Structure Of The Transporter Chbc, The Iic
           Component From The N,n'-diacetylchitobiose-specific
           Phosphotransferase System
 pdb|3QNQ|B Chain B, Crystal Structure Of The Transporter Chbc, The Iic
           Component From The N,n'-diacetylchitobiose-specific
           Phosphotransferase System
 pdb|3QNQ|C Chain C, Crystal Structure Of The Transporter Chbc, The Iic
           Component From The N,n'-diacetylchitobiose-specific
           Phosphotransferase System
 pdb|3QNQ|D Chain D, Crystal Structure Of The Transporter Chbc, The Iic
           Component From The N,n'-diacetylchitobiose-specific
           Phosphotransferase System
          Length = 442

 Score = 26.9 bits (58), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 6/46 (13%)

Query: 64  GDVFRPS------PHPMLFSALIGTGYQITTVTLSVILFAIVGDLY 103
           G V RPS        P+LFS  +G+G +I+ V L ++ FA+   +Y
Sbjct: 370 GLVARPSGAAVTWTTPILFSGYLGSGGKISGVILQLVNFALAFVIY 415


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.330    0.144    0.442 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,000,172
Number of Sequences: 62578
Number of extensions: 108364
Number of successful extensions: 336
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 334
Number of HSP's gapped (non-prelim): 2
length of query: 105
length of database: 14,973,337
effective HSP length: 70
effective length of query: 35
effective length of database: 10,592,877
effective search space: 370750695
effective search space used: 370750695
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)