Query psy17177
Match_columns 105
No_of_seqs 113 out of 501
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 23:50:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17177.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17177hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1278|consensus 100.0 6E-32 1.3E-36 225.7 6.0 84 1-104 275-358 (628)
2 KOG1277|consensus 100.0 2.6E-30 5.7E-35 212.9 6.5 90 1-105 235-324 (593)
3 PF02990 EMP70: Endomembrane p 100.0 4.3E-29 9.2E-34 207.2 4.4 84 1-104 209-292 (521)
4 KOG1277|consensus 87.8 0.38 8.2E-06 41.2 2.2 32 18-49 208-239 (593)
5 KOG1278|consensus 70.7 2.1 4.5E-05 37.4 1.1 27 21-49 253-279 (628)
6 PF12669 P12: Virus attachment 32.8 54 0.0012 19.9 2.6 16 8-23 11-26 (58)
7 PF02990 EMP70: Endomembrane p 32.4 18 0.00039 30.6 0.5 28 21-49 186-213 (521)
8 PF12270 Cyt_c_ox_IV: Cytochro 32.0 1.9E+02 0.0042 20.7 6.6 48 52-103 73-128 (137)
9 KOG2131|consensus 31.1 17 0.00038 30.4 0.2 21 56-76 207-227 (427)
10 PF06610 DUF1144: Protein of u 29.9 31 0.00067 25.0 1.3 46 56-101 76-127 (143)
11 PF13209 DUF4017: Protein of u 28.6 15 0.00033 22.7 -0.4 16 55-70 28-43 (60)
12 PLN00010 cyclin-dependent kina 28.6 32 0.0007 22.9 1.1 22 53-76 46-67 (86)
13 PRK03814 oxaloacetate decarbox 28.6 66 0.0014 21.1 2.6 27 78-104 15-41 (85)
14 PF04191 PEMT: Phospholipid me 28.5 1.4E+02 0.0031 18.9 4.2 19 60-78 41-59 (106)
15 PF04277 OAD_gamma: Oxaloaceta 26.9 66 0.0014 19.9 2.3 26 77-102 7-32 (79)
16 PTZ00453 cyclin-dependent kina 24.8 43 0.00092 22.8 1.2 22 53-76 70-91 (96)
17 PF06709 DUF1196: Protein of u 23.7 36 0.00079 20.3 0.6 9 60-68 43-51 (51)
18 cd01177 IPT_NFkappaB IPT domai 22.1 37 0.00081 23.2 0.5 11 64-74 61-71 (102)
No 1
>KOG1278|consensus
Probab=99.97 E-value=6e-32 Score=225.69 Aligned_cols=84 Identities=48% Similarity=0.843 Sum_probs=79.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhccCccccchhhhhhhhhhhHHHHHhhhhccCcccceeeeecccCCCCCcchhhhhc
Q psy17177 1 MVIFLVGLVSMILMRTLRKDYARYSKDEEVDDMIHWFSIFNSFMMVIFLERDLGDEYGWKQVHGDVFRPSPHPMLFSALI 80 (105)
Q Consensus 1 iv~~L~~~v~~Il~Rtl~~D~~~y~~~~~~~~~~h~~s~~ns~~~~~~~~~~~~d~~GWKll~gDVFR~P~~~~lLs~lv 80 (105)
+|++|+++|++|++||+|||++|||+.|. |+|.+||+|||++||||||+|+++++||+++
T Consensus 275 IVlfLSgiv~mI~lRtl~rDiarYne~d~--------------------~~d~~Ee~GWKLVhGDVFR~P~~~~lLsv~v 334 (628)
T KOG1278|consen 275 IVLFLSGIVAMIMLRTLYRDIARYNELDL--------------------DDDAQEESGWKLVHGDVFRPPRNSMLLSVLV 334 (628)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhccccc--------------------hhhhhhhcceEEeecccccCCCCCeEEEEEe
Confidence 58999999999999999999999998875 3455899999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHhhcccC
Q psy17177 81 GTGYQITTVTLSVILFAIVGDLYT 104 (105)
Q Consensus 81 G~G~Qll~~~~~~i~~a~lG~~~~ 104 (105)
|+|+|+++|++++++|||+|+++|
T Consensus 335 GsGvQ~l~M~~vti~fA~lGflSP 358 (628)
T KOG1278|consen 335 GSGVQLLGMILVTIFFACLGFLSP 358 (628)
T ss_pred ccChhhhHHHHHHHHHHHhccCCc
Confidence 999999999999999999999986
No 2
>KOG1277|consensus
Probab=99.96 E-value=2.6e-30 Score=212.89 Aligned_cols=90 Identities=66% Similarity=1.088 Sum_probs=82.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhccCccccchhhhhhhhhhhHHHHHhhhhccCcccceeeeecccCCCCCcchhhhhc
Q psy17177 1 MVIFLVGLVSMILMRTLRKDYARYSKDEEVDDMIHWFSIFNSFMMVIFLERDLGDEYGWKQVHGDVFRPSPHPMLFSALI 80 (105)
Q Consensus 1 iv~~L~~~v~~Il~Rtl~~D~~~y~~~~~~~~~~h~~s~~ns~~~~~~~~~~~~d~~GWKll~gDVFR~P~~~~lLs~lv 80 (105)
+|+||+|+|++||+||||||++||+++++. ..+.|+|.+||.|||++||||||+|+|+.|+|+++
T Consensus 235 mVifLvGlvamILMRtLrnDyarY~~dee~---------------~d~~d~d~~~E~GWK~vHgDVFR~p~~~~Lfsa~l 299 (593)
T KOG1277|consen 235 MVIFLVGLVAMILMRTLRNDYARYAKDEEA---------------LDDMDRDDQEEYGWKQVHGDVFRFPSHPLLFSAVL 299 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhh---------------hccccccccccccceeeecccccCCCccHHHHHHh
Confidence 489999999999999999999999998762 12247889999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHhhcccCC
Q psy17177 81 GTGYQITTVTLSVILFAIVGDLYTE 105 (105)
Q Consensus 81 G~G~Qll~~~~~~i~~a~lG~~~~~ 105 (105)
|+|.|++..+++++++|.+|.+|++
T Consensus 300 GsG~Qlf~l~~~ii~~Alvg~fy~~ 324 (593)
T KOG1277|consen 300 GSGAQLFTLVLIIIMLALVGVFYTE 324 (593)
T ss_pred ccccchHHHHHHHHHHHHHhhhhcc
Confidence 9999999999999999999999865
No 3
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=99.95 E-value=4.3e-29 Score=207.24 Aligned_cols=84 Identities=52% Similarity=0.935 Sum_probs=77.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhccCccccchhhhhhhhhhhHHHHHhhhhccCcccceeeeecccCCCCCcchhhhhc
Q psy17177 1 MVIFLVGLVSMILMRTLRKDYARYSKDEEVDDMIHWFSIFNSFMMVIFLERDLGDEYGWKQVHGDVFRPSPHPMLFSALI 80 (105)
Q Consensus 1 iv~~L~~~v~~Il~Rtl~~D~~~y~~~~~~~~~~h~~s~~ns~~~~~~~~~~~~d~~GWKll~gDVFR~P~~~~lLs~lv 80 (105)
+|++|+++|++|++|++|||++||++++++ +|.+||+|||++||||||+|+|+++||+++
T Consensus 209 ivl~L~~~v~~Il~R~l~~D~~~y~~~~~~--------------------~~~~ee~GWKlvhgDVFR~P~~~~lls~lv 268 (521)
T PF02990_consen 209 IVLFLSGLVAIILLRTLRRDISRYNDEDSE--------------------EDDQEESGWKLVHGDVFRPPKHPMLLSALV 268 (521)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccccc--------------------cccccccchhhhhHHHhcCcCCchHHHhHh
Confidence 478999999999999999999999997652 245789999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHhhcccC
Q psy17177 81 GTGYQITTVTLSVILFAIVGDLYT 104 (105)
Q Consensus 81 G~G~Qll~~~~~~i~~a~lG~~~~ 104 (105)
|+|+|+++|++++++++++|++++
T Consensus 269 G~G~Qll~~~~~~~~~a~~g~~~~ 292 (521)
T PF02990_consen 269 GTGIQLLFMALVTLFFAALGFLSP 292 (521)
T ss_pred cchhhhhHHHHHHHHHHHhhhccc
Confidence 999999999999999999999885
No 4
>KOG1277|consensus
Probab=87.81 E-value=0.38 Score=41.23 Aligned_cols=32 Identities=56% Similarity=0.990 Sum_probs=26.1
Q ss_pred HHHHHhhccCccccchhhhhhhhhhhHHHHHh
Q psy17177 18 RKDYARYSKDEEVDDMIHWFSIFNSFMMVIFL 49 (105)
Q Consensus 18 ~~D~~~y~~~~~~~~~~h~~s~~ns~~~~~~~ 49 (105)
++|+.+|.+....+.++||+|+.||++.+.++
T Consensus 208 ~~rfdkyld~~ff~h~IHWfSIfNSfmmVifL 239 (593)
T KOG1277|consen 208 EKRFDKYLDPSFFPHRIHWFSIFNSFMMVIFL 239 (593)
T ss_pred HHHhHhhcccccccceeehhhHHHHHHHHHHH
Confidence 56777787766566789999999999988887
No 5
>KOG1278|consensus
Probab=70.74 E-value=2.1 Score=37.43 Aligned_cols=27 Identities=52% Similarity=0.955 Sum_probs=20.3
Q ss_pred HHhhccCccccchhhhhhhhhhhHHHHHh
Q psy17177 21 YARYSKDEEVDDMIHWFSIFNSFMMVIFL 49 (105)
Q Consensus 21 ~~~y~~~~~~~~~~h~~s~~ns~~~~~~~ 49 (105)
+..|-+.+ +.++||+|+.||.+.+.++
T Consensus 253 WD~yL~m~--~~qIhWfSIiNSlvIVlfL 279 (628)
T KOG1278|consen 253 WDYYLHME--DVQIHWFSIINSLVIVLFL 279 (628)
T ss_pred HHHHhcCC--CCceEEEehhhhHHHHHHH
Confidence 34454433 3579999999999999888
No 6
>PF12669 P12: Virus attachment protein p12 family
Probab=32.85 E-value=54 Score=19.88 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHh
Q psy17177 8 LVSMILMRTLRKDYAR 23 (105)
Q Consensus 8 ~v~~Il~Rtl~~D~~~ 23 (105)
+++.++.|.+.||.++
T Consensus 11 ~~~~v~~r~~~k~~K~ 26 (58)
T PF12669_consen 11 AVAYVAIRKFIKDKKK 26 (58)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 3333345777777654
No 7
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=32.44 E-value=18 Score=30.63 Aligned_cols=28 Identities=50% Similarity=1.060 Sum_probs=20.2
Q ss_pred HHhhccCccccchhhhhhhhhhhHHHHHh
Q psy17177 21 YARYSKDEEVDDMIHWFSIFNSFMMVIFL 49 (105)
Q Consensus 21 ~~~y~~~~~~~~~~h~~s~~ns~~~~~~~ 49 (105)
+.+|.+. ..+.++||.|+.||...+.++
T Consensus 186 wd~Yl~~-~~~~~ihw~SiiNS~iivl~L 213 (521)
T PF02990_consen 186 WDKYLDS-MFDSQIHWFSIINSFIIVLFL 213 (521)
T ss_pred ccccccc-ccCCceEEEeHHHHHHHHHHH
Confidence 4456553 224678999999999887776
No 8
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=32.05 E-value=1.9e+02 Score=20.70 Aligned_cols=48 Identities=23% Similarity=0.517 Sum_probs=22.7
Q ss_pred hccCcccceeeeecccCCCC-Ccchhh---hhcchhHH----HHHHHHHHHHHHHhhccc
Q psy17177 52 DLGDEYGWKQVHGDVFRPSP-HPMLFS---ALIGTGYQ----ITTVTLSVILFAIVGDLY 103 (105)
Q Consensus 52 ~~~d~~GWKll~gDVFR~P~-~~~lLs---~lvG~G~Q----ll~~~~~~i~~a~lG~~~ 103 (105)
|.+|..| .-..|.|.+ .|..++ ++++-|+- ++....+.++.++.|..+
T Consensus 73 EI~dgAG----e~GfFsP~SwWPl~la~~~al~~lGla~g~Wl~~iG~~~~i~~~~G~vf 128 (137)
T PF12270_consen 73 EIADGAG----ELGFFSPHSWWPLVLAAAAALVFLGLAFGWWLILIGAVLLIVAVVGWVF 128 (137)
T ss_pred ccccCCC----CcCcCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445555 333355545 455543 33333332 333444455556666655
No 9
>KOG2131|consensus
Probab=31.09 E-value=17 Score=30.43 Aligned_cols=21 Identities=24% Similarity=0.528 Sum_probs=17.1
Q ss_pred cccceeeeecccCCCCCcchh
Q psy17177 56 EYGWKQVHGDVFRPSPHPMLF 76 (105)
Q Consensus 56 ~~GWKll~gDVFR~P~~~~lL 76 (105)
...|--+|.||||+|+...-+
T Consensus 207 ~gSwtp~HaDVf~s~swS~ni 227 (427)
T KOG2131|consen 207 AGSWTPFHADVFHSPSWSVNI 227 (427)
T ss_pred CCCCCccchhhhcCCcceeee
Confidence 456999999999999876544
No 10
>PF06610 DUF1144: Protein of unknown function (DUF1144); InterPro: IPR010574 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=29.92 E-value=31 Score=25.02 Aligned_cols=46 Identities=20% Similarity=0.281 Sum_probs=35.5
Q ss_pred cccceeeeec-----ccCCCCCcchhhhhcchhHHHHHHHHHHHHHH-Hhhc
Q psy17177 56 EYGWKQVHGD-----VFRPSPHPMLFSALIGTGYQITTVTLSVILFA-IVGD 101 (105)
Q Consensus 56 ~~GWKll~gD-----VFR~P~~~~lLs~lvG~G~Qll~~~~~~i~~a-~lG~ 101 (105)
.++|+....| .|..|.|...|-..-.+|-|+...+.+-.+.+ .+|.
T Consensus 76 ~~~~~~~l~D~lAyvsFQsPVYaaIL~~vGA~~~qivtav~snavvs~~mG~ 127 (143)
T PF06610_consen 76 PSRWSKNLADLLAYVSFQSPVYAAILWFVGADGDQIVTAVSSNAVVSMVMGR 127 (143)
T ss_pred chHHHHHHHHHHHHHHhchHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhh
Confidence 4557766666 48899999999888889999999888777666 3443
No 11
>PF13209 DUF4017: Protein of unknown function (DUF4017)
Probab=28.65 E-value=15 Score=22.70 Aligned_cols=16 Identities=25% Similarity=0.655 Sum_probs=13.9
Q ss_pred CcccceeeeecccCCC
Q psy17177 55 DEYGWKQVHGDVFRPS 70 (105)
Q Consensus 55 d~~GWKll~gDVFR~P 70 (105)
.-.|||+..|.++--|
T Consensus 28 N~vgWKlfvGQ~YAiP 43 (60)
T PF13209_consen 28 NTVGWKLFVGQAYAIP 43 (60)
T ss_pred cccchhheecchhHhH
Confidence 4679999999998887
No 12
>PLN00010 cyclin-dependent kinases regulatory subunit; Provisional
Probab=28.59 E-value=32 Score=22.94 Aligned_cols=22 Identities=50% Similarity=1.026 Sum_probs=17.4
Q ss_pred ccCcccceeeeecccCCCCCcchh
Q psy17177 53 LGDEYGWKQVHGDVFRPSPHPMLF 76 (105)
Q Consensus 53 ~~d~~GWKll~gDVFR~P~~~~lL 76 (105)
++-..|| +|-+++++-+|.+||
T Consensus 46 IqqS~GW--~Hy~~h~pEphILlF 67 (86)
T PLN00010 46 VQQSRGW--VHYAIHRPEPHIMLF 67 (86)
T ss_pred cccCCCc--EEeeecCCCceEEEE
Confidence 4567899 899988888877665
No 13
>PRK03814 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=28.59 E-value=66 Score=21.11 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=18.7
Q ss_pred hhcchhHHHHHHHHHHHHHHHhhcccC
Q psy17177 78 ALIGTGYQITTVTLSVILFAIVGDLYT 104 (105)
Q Consensus 78 ~lvG~G~Qll~~~~~~i~~a~lG~~~~ 104 (105)
.++|.|.-|++.++.+.++..++.+++
T Consensus 15 m~~GM~~VF~fL~lLi~~~~l~~~~~~ 41 (85)
T PRK03814 15 MLTGMGVVFIFLTLLVYLVQLMSKLIP 41 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 567777777777777666667776653
No 14
>PF04191 PEMT: Phospholipid methyltransferase ; InterPro: IPR007318 The Saccharomyces cerevisiae (Baker's yeast) phospholipid methyltransferase (2.1.1.16 from EC) has a broad substrate specificity of unsaturated phospholipids [].; GO: 0008170 N-methyltransferase activity, 0006644 phospholipid metabolic process
Probab=28.47 E-value=1.4e+02 Score=18.88 Aligned_cols=19 Identities=26% Similarity=0.426 Sum_probs=15.2
Q ss_pred eeeeecccCCCCCcchhhh
Q psy17177 60 KQVHGDVFRPSPHPMLFSA 78 (105)
Q Consensus 60 Kll~gDVFR~P~~~~lLs~ 78 (105)
+++..-.||.-+||+-++.
T Consensus 41 ~Lvt~G~Y~~vRhPmY~g~ 59 (106)
T PF04191_consen 41 RLVTTGPYRYVRHPMYLGF 59 (106)
T ss_pred cccccCCccCcCChHHHHH
Confidence 5889999999999985543
No 15
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=26.87 E-value=66 Score=19.88 Aligned_cols=26 Identities=19% Similarity=0.470 Sum_probs=20.3
Q ss_pred hhhcchhHHHHHHHHHHHHHHHhhcc
Q psy17177 77 SALIGTGYQITTVTLSVILFAIVGDL 102 (105)
Q Consensus 77 s~lvG~G~Qll~~~~~~i~~a~lG~~ 102 (105)
-.++|.|+=|++.++..+++..++.+
T Consensus 7 i~i~Gm~iVF~~L~lL~~~i~l~~~~ 32 (79)
T PF04277_consen 7 IMIIGMGIVFLVLILLILVISLMSKL 32 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888888888888888887765
No 16
>PTZ00453 cyclin-dependent kinase; Provisional
Probab=24.77 E-value=43 Score=22.79 Aligned_cols=22 Identities=36% Similarity=0.874 Sum_probs=17.8
Q ss_pred ccCcccceeeeecccCCCCCcchh
Q psy17177 53 LGDEYGWKQVHGDVFRPSPHPMLF 76 (105)
Q Consensus 53 ~~d~~GWKll~gDVFR~P~~~~lL 76 (105)
.+-..|| +|-+++++-+|.+||
T Consensus 70 IqqS~GW--~HY~~h~pEphILLF 91 (96)
T PTZ00453 70 VQQSVGW--RHYMIHKPEPHVLLF 91 (96)
T ss_pred hccCCCc--EEeeecCCCCcEEEE
Confidence 5567899 899999988887665
No 17
>PF06709 DUF1196: Protein of unknown function (DUF1196); InterPro: IPR009585 This family consists of several hypothetical bacterial proteins of around 51 residues in length which seem to be specific to Vibrio cholerae. The function of this family is unknown.
Probab=23.66 E-value=36 Score=20.30 Aligned_cols=9 Identities=56% Similarity=0.925 Sum_probs=8.3
Q ss_pred eeeeecccC
Q psy17177 60 KQVHGDVFR 68 (105)
Q Consensus 60 Kll~gDVFR 68 (105)
|++|.|.||
T Consensus 43 Kmlh~difr 51 (51)
T PF06709_consen 43 KMLHIDIFR 51 (51)
T ss_pred heeeeeecC
Confidence 889999998
No 18
>cd01177 IPT_NFkappaB IPT domain of the transcription factor NFkappaB and related transcription factors. NFkappaB is considered a central regulator of stress responses, activated by different stressful conditions, including physical stress, oxidative stress, and exposure to certain chemicals. NFkappaB blocking cell apoptosis in several cell types, gives it an important role in cell proliferation and differentiation.
Probab=22.14 E-value=37 Score=23.24 Aligned_cols=11 Identities=36% Similarity=0.413 Sum_probs=8.5
Q ss_pred ecccCCCCCcc
Q psy17177 64 GDVFRPSPHPM 74 (105)
Q Consensus 64 gDVFR~P~~~~ 74 (105)
.=|||+|+|..
T Consensus 61 AIvfkTPpY~~ 71 (102)
T cd01177 61 AIVFRTPPYHD 71 (102)
T ss_pred EEEEeCCCCCC
Confidence 45799999865
Done!