Query psy17177
Match_columns 105
No_of_seqs 113 out of 501
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 23:51:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17177.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17177hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3soy_A NTF2-like superfamily p 29.5 25 0.00085 23.1 1.7 18 55-72 122-139 (145)
2 2klu_A T-cell surface glycopro 28.2 64 0.0022 19.8 3.3 25 70-95 5-29 (70)
3 2f86_B Hypothetical protein K1 24.7 24 0.00083 23.4 1.0 22 55-76 119-140 (143)
4 3arc_T Photosystem II reaction 22.0 74 0.0025 16.7 2.3 13 86-98 9-21 (32)
5 1cks_A Cyclin-dependent kinase 19.2 47 0.0016 20.9 1.4 22 53-76 48-69 (79)
6 3qy2_A Cyclin-dependent kinase 17.6 56 0.0019 22.0 1.6 22 53-76 79-100 (117)
7 1puc_A P13SUC1, P13; cell cycl 17.3 52 0.0018 21.7 1.3 22 53-76 75-96 (105)
8 2knc_B Integrin beta-3; transm 17.0 80 0.0027 19.4 2.1 23 4-26 22-49 (79)
9 2zjr_V 50S ribosomal protein L 16.2 67 0.0023 19.1 1.6 12 13-24 42-53 (67)
10 1vq8_V 50S ribosomal protein L 15.3 72 0.0025 19.2 1.6 12 13-24 46-57 (71)
No 1
>3soy_A NTF2-like superfamily protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Salmonella enterica subsp}
Probab=29.46 E-value=25 Score=23.08 Aligned_cols=18 Identities=28% Similarity=0.543 Sum_probs=13.9
Q ss_pred CcccceeeeecccCCCCC
Q psy17177 55 DEYGWKQVHGDVFRPSPH 72 (105)
Q Consensus 55 d~~GWKll~gDVFR~P~~ 72 (105)
++.|||.+|.-.-.+|..
T Consensus 122 ~~ggWkIvh~H~S~~~~~ 139 (145)
T 3soy_A 122 PNTGWRIVHVHYSGPAKT 139 (145)
T ss_dssp TTTEEEEEEEEEECCCCC
T ss_pred CCCCEEEEEEecCCCCCC
Confidence 458999999887766654
No 2
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=28.17 E-value=64 Score=19.78 Aligned_cols=25 Identities=12% Similarity=0.033 Sum_probs=16.5
Q ss_pred CCCcchhhhhcchhHHHHHHHHHHHH
Q psy17177 70 SPHPMLFSALIGTGYQITTVTLSVIL 95 (105)
Q Consensus 70 P~~~~lLs~lvG~G~Qll~~~~~~i~ 95 (105)
+.+|.+| +.+|.++-++..+..-++
T Consensus 5 ~~~p~~L-ivlGg~~~lll~~glcI~ 29 (70)
T 2klu_A 5 PRGSMAL-IVLGGVAGLLLFIGLGIF 29 (70)
T ss_dssp CCCSSHH-HHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHH-HHHhHHHHHHHHHHHHHH
Confidence 4567888 788888777655544333
No 3
>2f86_B Hypothetical protein K11E8.1D; UNC-43, oligomerization domain, transferase; 2.64A {Caenorhabditis elegans} SCOP: d.17.4.7
Probab=24.68 E-value=24 Score=23.43 Aligned_cols=22 Identities=14% Similarity=0.099 Sum_probs=10.8
Q ss_pred CcccceeeeecccCCCCCcchh
Q psy17177 55 DEYGWKQVHGDVFRPSPHPMLF 76 (105)
Q Consensus 55 d~~GWKll~gDVFR~P~~~~lL 76 (105)
.+.+||.+|.-.-..|+.+...
T Consensus 119 ~~g~WkivH~H~S~~~~~~~~~ 140 (143)
T 2f86_B 119 KQGRWVCVHVHRSTQPSTNTTV 140 (143)
T ss_dssp ETTEEEEEEEEEEC--------
T ss_pred eCCcEEEEEEeECCCCCCCcee
Confidence 3467999998777666555443
No 4
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=22.02 E-value=74 Score=16.69 Aligned_cols=13 Identities=31% Similarity=0.613 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHH
Q psy17177 86 ITTVTLSVILFAI 98 (105)
Q Consensus 86 ll~~~~~~i~~a~ 98 (105)
++++++++++||.
T Consensus 9 ll~~tlgiiFFAI 21 (32)
T 3arc_T 9 IFACIIALFFFAI 21 (32)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 4566777777775
No 5
>1cks_A Cyclin-dependent kinase subunit, type 2; cell division; 2.10A {Homo sapiens} SCOP: d.97.1.1 PDB: 1buh_B 1dks_A 1dkt_A* 2ast_C* 2ass_C*
Probab=19.18 E-value=47 Score=20.89 Aligned_cols=22 Identities=41% Similarity=0.925 Sum_probs=17.5
Q ss_pred ccCcccceeeeecccCCCCCcchh
Q psy17177 53 LGDEYGWKQVHGDVFRPSPHPMLF 76 (105)
Q Consensus 53 ~~d~~GWKll~gDVFR~P~~~~lL 76 (105)
++-..|| +|-.++++-+|.+||
T Consensus 48 IqqS~GW--~Hy~ih~pEphiLlF 69 (79)
T 1cks_A 48 VQQSLGW--VHYMIHEPEPHILLF 69 (79)
T ss_dssp CCCCTTC--CCCBCCCCCCCCCCC
T ss_pred cccCCCe--EEEEecCCCCeEEEE
Confidence 5678899 788888887777665
No 6
>3qy2_A Cyclin-dependent kinases regulatory subunit; protein kinase activator, ubiquitin binding, transcription, cell cycle, transferase RE; HET: FLC; 2.59A {Saccharomyces cerevisiae}
Probab=17.57 E-value=56 Score=21.97 Aligned_cols=22 Identities=32% Similarity=0.773 Sum_probs=18.3
Q ss_pred ccCcccceeeeecccCCCCCcchh
Q psy17177 53 LGDEYGWKQVHGDVFRPSPHPMLF 76 (105)
Q Consensus 53 ~~d~~GWKll~gDVFR~P~~~~lL 76 (105)
++-..|| .|-.++++-+|.+||
T Consensus 79 IqqS~GW--~HY~ih~pEPhILLF 100 (117)
T 3qy2_A 79 ITQSLGW--EHYECHAAEPHILLF 100 (117)
T ss_dssp CCCCSSC--EEECCTTSCTTEEEE
T ss_pred cccCCCc--EEeeecCCCCeEEEE
Confidence 5678899 899999988887765
No 7
>1puc_A P13SUC1, P13; cell cycle, domain swapping, strand-exchanged dimer, binding protein; HET: CPS; 1.95A {Schizosaccharomyces pombe} SCOP: d.97.1.1 PDB: 1sce_A
Probab=17.28 E-value=52 Score=21.74 Aligned_cols=22 Identities=36% Similarity=0.803 Sum_probs=18.0
Q ss_pred ccCcccceeeeecccCCCCCcchh
Q psy17177 53 LGDEYGWKQVHGDVFRPSPHPMLF 76 (105)
Q Consensus 53 ~~d~~GWKll~gDVFR~P~~~~lL 76 (105)
++-..|| .|-.++++-+|.+||
T Consensus 75 IqqS~GW--~Hy~ih~pEPhiLLF 96 (105)
T 1puc_A 75 ITQSLGW--EMYEVHVPEPHILLF 96 (105)
T ss_dssp CCCCSSC--CCCCCCCCCTTCCCC
T ss_pred cccCCCc--EEEeecCCCCeEEEE
Confidence 5678899 899999988887765
No 8
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=17.03 E-value=80 Score=19.40 Aligned_cols=23 Identities=30% Similarity=0.884 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHH-----HHHHHhhcc
Q psy17177 4 FLVGLVSMILMRTL-----RKDYARYSK 26 (105)
Q Consensus 4 ~L~~~v~~Il~Rtl-----~~D~~~y~~ 26 (105)
+|.|++.+++.|.+ ||.++||++
T Consensus 22 lliGllllliwk~~~~i~DrrE~~kFEk 49 (79)
T 2knc_B 22 LLIGLAALLIWKLLITIHDRKEFAKFEE 49 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555533 455555544
No 9
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=16.17 E-value=67 Score=19.06 Aligned_cols=12 Identities=33% Similarity=0.584 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhh
Q psy17177 13 LMRTLRKDYARY 24 (105)
Q Consensus 13 l~Rtl~~D~~~y 24 (105)
-.|.+|+||+|-
T Consensus 42 ~ir~vRr~IARi 53 (67)
T 2zjr_V 42 RVRQLRREVAQL 53 (67)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 368999999985
No 10
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=15.33 E-value=72 Score=19.16 Aligned_cols=12 Identities=42% Similarity=0.562 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhh
Q psy17177 13 LMRTLRKDYARY 24 (105)
Q Consensus 13 l~Rtl~~D~~~y 24 (105)
-.|.+|+||+|-
T Consensus 46 ~ir~vRr~IARi 57 (71)
T 1vq8_V 46 RIKELRKAIARI 57 (71)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 368999999985
Done!