Query psy17177
Match_columns 105
No_of_seqs 113 out of 501
Neff 5.7
Searched_HMMs 13730
Date Fri Aug 16 23:51:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17177.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17177hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gy7a_ d.17.4.2 (A:) Nuclear 33.4 4.4 0.00032 24.8 0.1 13 55-68 105-117 (121)
2 d1cksa_ d.97.1.1 (A:) CksHs2 { 28.9 11 0.00083 22.0 1.5 23 52-76 46-68 (74)
3 d1puca_ d.97.1.1 (A:) suc1 {Fi 25.5 13 0.00095 22.9 1.3 22 53-76 75-96 (101)
4 d1qb3a_ d.97.1.1 (A:) cks1 {Ba 21.4 20 0.0014 22.5 1.6 22 53-76 74-95 (113)
5 d1zo2a1 d.17.4.2 (A:10-126) Nu 20.6 16 0.0012 21.8 1.1 13 55-68 103-115 (117)
6 d3cnxa1 d.17.4.17 (A:5-157) Un 20.5 17 0.0013 22.1 1.2 11 55-65 137-147 (153)
7 d2f86b1 d.17.4.7 (B:343-471) A 18.8 16 0.0012 20.5 0.7 10 55-64 116-125 (129)
8 d2ux0a1 d.17.4.7 (A:387-521) A 17.7 16 0.0011 20.9 0.5 10 55-64 121-130 (135)
9 d1gy6a_ d.17.4.2 (A:) Nuclear 13.9 19 0.0014 21.9 0.1 15 55-70 106-120 (125)
10 d1j5ya1 a.4.5.1 (A:3-67) Putat 13.9 34 0.0025 18.2 1.3 11 14-24 36-46 (65)
No 1
>d1gy7a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=33.37 E-value=4.4 Score=24.84 Aligned_cols=13 Identities=38% Similarity=0.721 Sum_probs=11.1
Q ss_pred CcccceeeeecccC
Q psy17177 55 DEYGWKQVHGDVFR 68 (105)
Q Consensus 55 d~~GWKll~gDVFR 68 (105)
++.+|+ +++|+||
T Consensus 105 ~~~~y~-I~nD~FR 117 (121)
T d1gy7a_ 105 DGNSYY-VFNDIFR 117 (121)
T ss_dssp ETTEEE-EEEEEEE
T ss_pred eCCEEE-EEEEEEE
Confidence 467898 8999999
No 2
>d1cksa_ d.97.1.1 (A:) CksHs2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.86 E-value=11 Score=21.98 Aligned_cols=23 Identities=39% Similarity=0.886 Sum_probs=18.4
Q ss_pred hccCcccceeeeecccCCCCCcchh
Q psy17177 52 DLGDEYGWKQVHGDVFRPSPHPMLF 76 (105)
Q Consensus 52 ~~~d~~GWKll~gDVFR~P~~~~lL 76 (105)
.++-..|| +|-.++++-+|.++|
T Consensus 46 GIqqS~GW--~Hym~h~pEphiLlf 68 (74)
T d1cksa_ 46 GVQQSLGW--VHYMIHEPEPHILLF 68 (74)
T ss_dssp TCCCCTTC--CCCBCCCCCCCCCCC
T ss_pred CcccCCCc--EEeeeeCCCceEEEE
Confidence 35678899 899999988887665
No 3
>d1puca_ d.97.1.1 (A:) suc1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=25.48 E-value=13 Score=22.93 Aligned_cols=22 Identities=36% Similarity=0.803 Sum_probs=18.2
Q ss_pred ccCcccceeeeecccCCCCCcchh
Q psy17177 53 LGDEYGWKQVHGDVFRPSPHPMLF 76 (105)
Q Consensus 53 ~~d~~GWKll~gDVFR~P~~~~lL 76 (105)
++-..|| +|-.+|++-+|.+||
T Consensus 75 IqqS~GW--~Hymih~pEPhiLLF 96 (101)
T d1puca_ 75 ITQSLGW--EMYEVHVPEPHILLF 96 (101)
T ss_dssp CCCCSSC--CCCCCCCCCTTCCCC
T ss_pred cccCCCc--EeeeeeCCCceEEEE
Confidence 5678899 899999998887765
No 4
>d1qb3a_ d.97.1.1 (A:) cks1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.42 E-value=20 Score=22.48 Aligned_cols=22 Identities=36% Similarity=0.883 Sum_probs=18.5
Q ss_pred ccCcccceeeeecccCCCCCcchh
Q psy17177 53 LGDEYGWKQVHGDVFRPSPHPMLF 76 (105)
Q Consensus 53 ~~d~~GWKll~gDVFR~P~~~~lL 76 (105)
++-..|| +|-.+|++-+|.+||
T Consensus 74 IqqS~GW--~Hymih~pEphiLLF 95 (113)
T d1qb3a_ 74 ITQSLGW--EHYECHAPEPHILLF 95 (113)
T ss_dssp CCCCTTC--EEESCCCCCTTEEEE
T ss_pred cccCCCc--EeeeecCCCCeEEEE
Confidence 5568899 899999998887776
No 5
>d1zo2a1 d.17.4.2 (A:10-126) Nuclear transport factor-2 (NTF2) {Cryptosporidium parvum [TaxId: 5807]}
Probab=20.64 E-value=16 Score=21.80 Aligned_cols=13 Identities=31% Similarity=0.703 Sum_probs=10.2
Q ss_pred CcccceeeeecccC
Q psy17177 55 DEYGWKQVHGDVFR 68 (105)
Q Consensus 55 d~~GWKll~gDVFR 68 (105)
.+.+|+ +++|+||
T Consensus 103 ~~~~~~-I~nD~FR 115 (117)
T d1zo2a1 103 GNGGFM-IFNDLFR 115 (117)
T ss_dssp SSSCEE-EEEEEEE
T ss_pred CCCCEE-EEeEEee
Confidence 345785 8999998
No 6
>d3cnxa1 d.17.4.17 (A:5-157) Uncharacterized protein SAV4671 {Streptomyces avermitilis [TaxId: 33903]}
Probab=20.50 E-value=17 Score=22.15 Aligned_cols=11 Identities=27% Similarity=0.465 Sum_probs=8.4
Q ss_pred Ccccceeeeec
Q psy17177 55 DEYGWKQVHGD 65 (105)
Q Consensus 55 d~~GWKll~gD 65 (105)
++.+||++|--
T Consensus 137 ~dg~Wkivh~H 147 (153)
T d3cnxa1 137 TPDGWKLWSHH 147 (153)
T ss_dssp CTTCCEEEEEE
T ss_pred ECCEEEEEEEe
Confidence 46799999853
No 7
>d2f86b1 d.17.4.7 (B:343-471) Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A {Caenorhabditis elegans [TaxId: 6239]}
Probab=18.80 E-value=16 Score=20.53 Aligned_cols=10 Identities=30% Similarity=0.448 Sum_probs=7.7
Q ss_pred Ccccceeeee
Q psy17177 55 DEYGWKQVHG 64 (105)
Q Consensus 55 d~~GWKll~g 64 (105)
.+.+||.+|.
T Consensus 116 ~~g~Wkivh~ 125 (129)
T d2f86b1 116 KQGRWVCVHV 125 (129)
T ss_dssp ETTEEEEEEE
T ss_pred ECCEEEEEEE
Confidence 4568999984
No 8
>d2ux0a1 d.17.4.7 (A:387-521) Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.67 E-value=16 Score=20.90 Aligned_cols=10 Identities=30% Similarity=0.518 Sum_probs=7.8
Q ss_pred Ccccceeeee
Q psy17177 55 DEYGWKQVHG 64 (105)
Q Consensus 55 d~~GWKll~g 64 (105)
.+.+||.+|.
T Consensus 121 ~~g~Wkivh~ 130 (135)
T d2ux0a1 121 RDGKWLNVHY 130 (135)
T ss_dssp ETTEEEEEEE
T ss_pred ECCEEEEEEE
Confidence 4678999984
No 9
>d1gy6a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=13.92 E-value=19 Score=21.89 Aligned_cols=15 Identities=27% Similarity=0.539 Sum_probs=11.6
Q ss_pred CcccceeeeecccCCC
Q psy17177 55 DEYGWKQVHGDVFRPS 70 (105)
Q Consensus 55 d~~GWKll~gDVFR~P 70 (105)
.+.+|+ +++|+||--
T Consensus 106 ~~~~y~-I~NDiFR~v 120 (125)
T d1gy6a_ 106 INDAWV-CTNDMFRLA 120 (125)
T ss_dssp ETTEEE-EEEEEEEEC
T ss_pred cCCEEE-EEeeEEEEE
Confidence 456787 799999953
No 10
>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=13.90 E-value=34 Score=18.25 Aligned_cols=11 Identities=18% Similarity=0.205 Sum_probs=8.9
Q ss_pred HHHHHHHHHhh
Q psy17177 14 MRTLRKDYARY 24 (105)
Q Consensus 14 ~Rtl~~D~~~y 24 (105)
-||++||++.-
T Consensus 36 ~~TI~rdi~~L 46 (65)
T d1j5ya1 36 RQVIVQDIAYL 46 (65)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 48999999854
Done!