RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy17177
         (105 letters)



>1h6w_A Bacteriophage T4 short tail fibre; structural protein, gene product
           12, adhesin, fibrous protein; 1.9A {Bacteriophage T4}
           SCOP: b.108.1.1 d.231.1.1
          Length = 312

 Score = 30.2 bits (66), Expect = 0.093
 Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 1/27 (3%)

Query: 58  GWKQVHGDVFRPSPHPMLFSALIGTGY 84
            W+  HG     S  P+  S  IGT Y
Sbjct: 274 AWRFCHGGTVSASDCPLYASR-IGTRY 299


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 28.3 bits (62), Expect = 0.49
 Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 15/67 (22%)

Query: 26  KDEEVDDMIH----------WFSIF---NSFMMVIFLERDLGDEYGW--KQVHGDVFRPS 70
             EE+D +I            F         M+  F+E  L   Y +    +  +  +PS
Sbjct: 47  SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106

Query: 71  PHPMLFS 77
               ++ 
Sbjct: 107 MMTRMYI 113


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.6 bits (58), Expect = 2.1
 Identities = 8/19 (42%), Positives = 12/19 (63%), Gaps = 3/19 (15%)

Query: 46  VIF---LERDLGDEYGWKQ 61
           VI    L+ +  D+YG+KQ
Sbjct: 527 VIVAGTLDINPDDDYGFKQ 545


>1puc_A P13SUC1, P13; cell cycle, domain swapping, strand-exchanged
          dimer, binding protein; HET: CPS; 1.95A
          {Schizosaccharomyces pombe} SCOP: d.97.1.1 PDB: 1sce_A
          Length = 105

 Score = 24.5 bits (53), Expect = 4.8
 Identities = 8/19 (42%), Positives = 10/19 (52%), Gaps = 2/19 (10%)

Query: 58 GWKQVHGDVFRPSPHPMLF 76
          GW     +V  P PH +LF
Sbjct: 80 GW--EMYEVHVPEPHILLF 96


>3qnq_A PTS system, cellobiose-specific IIC component; membrane protein,
           transporter, enzyme IIC, phosphoenolpyruva
           phosphotransferase system; HET: CBS ZDM MAL CIT; 3.29A
           {Bacillus cereus}
          Length = 442

 Score = 25.4 bits (56), Expect = 5.0
 Identities = 12/31 (38%), Positives = 21/31 (67%)

Query: 73  PMLFSALIGTGYQITTVTLSVILFAIVGDLY 103
           P+LFS  +G+G +I+ V L ++ FA+   +Y
Sbjct: 385 PILFSGYLGSGGKISGVILQLVNFALAFVIY 415


>1qb3_A Cyclin-dependent kinases regulatory subunit; cell cycle mutagenesis
           domain swapping, cyclin-dependent KIN cycle; 3.00A
           {Saccharomyces cerevisiae} SCOP: d.97.1.1
          Length = 150

 Score = 24.7 bits (53), Expect = 6.4
 Identities = 8/19 (42%), Positives = 10/19 (52%), Gaps = 2/19 (10%)

Query: 58  GWKQVHGDVFRPSPHPMLF 76
           GW   H +   P PH +LF
Sbjct: 84  GW--EHYECHAPEPHILLF 100


>3qy2_A Cyclin-dependent kinases regulatory subunit; protein kinase
           activator, ubiquitin binding, transcription, cell cycle,
           transferase RE; HET: FLC; 2.59A {Saccharomyces
           cerevisiae}
          Length = 117

 Score = 24.2 bits (52), Expect = 8.6
 Identities = 7/19 (36%), Positives = 9/19 (47%), Gaps = 2/19 (10%)

Query: 58  GWKQVHGDVFRPSPHPMLF 76
           GW   H +     PH +LF
Sbjct: 84  GW--EHYECHAAEPHILLF 100


>3es5_A Putative capsid protein; partitivirus, RNA virus, double stranded
           RNA virus, dsRNA virus, "T=2" capsid, icosahedral virus;
           3.30A {Penicillium stoloniferum virus F}
          Length = 420

 Score = 24.5 bits (52), Expect = 9.1
 Identities = 16/91 (17%), Positives = 24/91 (26%), Gaps = 14/91 (15%)

Query: 5   LVGLVSMILMRTLRKDYARYSKDEEVDDMIHWFSIFNSF-------MMVIFLERDLGDEY 57
           L+       +  LR  +         D      SIF                    G+  
Sbjct: 306 LLYADGAYEISALRDQFELLMARYTTDFKWRVESIFKVGPPPAGTTGYGAQTVSSTGNTA 365

Query: 58  GWK-------QVHGDVFRPSPHPMLFSALIG 81
            W+          G +F PS    LF  ++G
Sbjct: 366 RWQFPLSDADINIGYLFSPSKSFSLFPKMVG 396


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.330    0.144    0.442 

Gapped
Lambda     K      H
   0.267   0.0558    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,701,360
Number of extensions: 92983
Number of successful extensions: 217
Number of sequences better than 10.0: 1
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 15
Length of query: 105
Length of database: 6,701,793
Length adjustment: 70
Effective length of query: 35
Effective length of database: 4,747,323
Effective search space: 166156305
Effective search space used: 166156305
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.8 bits)