RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17177
         (105 letters)



>d1puca_ d.97.1.1 (A:) suc1 {Fission yeast (Schizosaccharomyces
          pombe) [TaxId: 4896]}
          Length = 101

 Score = 25.1 bits (55), Expect = 1.1
 Identities = 8/19 (42%), Positives = 10/19 (52%), Gaps = 2/19 (10%)

Query: 58 GWKQVHGDVFRPSPHPMLF 76
          GW     +V  P PH +LF
Sbjct: 80 GW--EMYEVHVPEPHILLF 96


>d1qb3a_ d.97.1.1 (A:) cks1 {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 113

 Score = 25.2 bits (55), Expect = 1.2
 Identities = 8/19 (42%), Positives = 10/19 (52%), Gaps = 2/19 (10%)

Query: 58 GWKQVHGDVFRPSPHPMLF 76
          GW   H +   P PH +LF
Sbjct: 79 GW--EHYECHAPEPHILLF 95


>d1cksa_ d.97.1.1 (A:) CksHs2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 74

 Score = 23.9 bits (52), Expect = 2.5
 Identities = 9/19 (47%), Positives = 11/19 (57%), Gaps = 2/19 (10%)

Query: 58 GWKQVHGDVFRPSPHPMLF 76
          GW  VH  +  P PH +LF
Sbjct: 52 GW--VHYMIHEPEPHILLF 68


>d1ocya_ d.231.1.1 (A:) Receptor-binding domain of short tail
          fibre protein gp12 {Bacteriophage T4 [TaxId: 10665]}
          Length = 198

 Score = 24.5 bits (52), Expect = 2.9
 Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 58 GWKQVHGDVFRPSPHPMLFSALIGTGYQITTVTLSV 93
           W+  HG     S  P+  S  IGT Y  ++    +
Sbjct: 29 AWRFCHGGTVSASDCPLYAS-RIGTRYGGSSSNPGL 63


>d1dq3a2 d.50.3.1 (A:336-414) PI-Pfui intein middle domain
          {Archaeon Pyrococcus furiosus [TaxId: 2261]}
          Length = 79

 Score = 23.9 bits (51), Expect = 3.2
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)

Query: 12 ILMRTLRKDYARYSKDEEVDDMIH 35
          +L++ LRK Y   +KDEEV  M+H
Sbjct: 54 VLVKMLRKLY-EATKDEEVKRMLH 76


>d1ku0a_ c.69.1.18 (A:) Lipase L1 {Bacillus stearothermophilus
           [TaxId: 1422]}
          Length = 388

 Score = 23.2 bits (49), Expect = 8.6
 Identities = 5/37 (13%), Positives = 11/37 (29%)

Query: 5   LVGLVSMILMRTLRKDYARYSKDEEVDDMIHWFSIFN 41
           +V  +SM   +    D            + +    +N
Sbjct: 319 IVNTISMNGPKRGSNDRIVPYDGTLKKGVWNDMGTYN 355


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.144    0.442 

Gapped
Lambda     K      H
   0.267   0.0599    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 416,414
Number of extensions: 18688
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 9
Length of query: 105
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 40
Effective length of database: 1,515,146
Effective search space: 60605840
Effective search space used: 60605840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.2 bits)