Query psy17178
Match_columns 384
No_of_seqs 390 out of 3456
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 23:51:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17178.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17178hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1225 Bcp Peroxiredoxin [Pos 100.0 1.3E-30 2.9E-35 216.3 12.2 134 49-192 2-136 (157)
2 COG0450 AhpC Peroxiredoxin [Po 100.0 4.9E-28 1.1E-32 204.9 14.0 150 50-208 2-153 (194)
3 PRK10382 alkyl hydroperoxide r 100.0 8.9E-28 1.9E-32 209.2 14.8 143 51-204 2-144 (187)
4 COG1225 Bcp Peroxiredoxin [Pos 100.0 1.5E-27 3.3E-32 198.1 15.1 131 241-381 4-140 (157)
5 PTZ00137 2-Cys peroxiredoxin; 99.9 2.9E-26 6.3E-31 208.1 14.3 150 46-204 63-213 (261)
6 PRK15000 peroxidase; Provision 99.9 2.6E-26 5.6E-31 202.8 13.7 145 52-205 3-151 (200)
7 TIGR03137 AhpC peroxiredoxin. 99.9 2.3E-26 5.1E-31 201.6 13.1 134 52-193 3-136 (187)
8 PRK10382 alkyl hydroperoxide r 99.9 1.4E-25 2.9E-30 195.5 16.9 135 242-379 3-137 (187)
9 PRK13190 putative peroxiredoxi 99.9 3.9E-26 8.4E-31 202.4 13.6 142 51-205 2-143 (202)
10 PRK13599 putative peroxiredoxi 99.9 5.6E-26 1.2E-30 202.5 13.6 143 52-205 3-145 (215)
11 TIGR03137 AhpC peroxiredoxin. 99.9 2.7E-25 5.8E-30 194.9 16.0 133 242-379 3-137 (187)
12 PRK13191 putative peroxiredoxi 99.9 1.5E-25 3.3E-30 199.8 14.2 144 50-205 6-150 (215)
13 cd03015 PRX_Typ2cys Peroxiredo 99.9 1.8E-25 3.9E-30 193.9 13.8 138 53-195 1-139 (173)
14 PTZ00253 tryparedoxin peroxida 99.9 1.7E-25 3.6E-30 198.3 13.7 147 51-205 6-153 (199)
15 cd03015 PRX_Typ2cys Peroxiredo 99.9 5.3E-25 1.1E-29 191.0 16.2 137 243-379 1-138 (173)
16 cd03014 PRX_Atyp2cys Peroxired 99.9 1.6E-25 3.6E-30 188.1 12.5 127 53-196 2-130 (143)
17 COG0450 AhpC Peroxiredoxin [Po 99.9 7.7E-25 1.7E-29 185.5 15.2 138 241-380 3-143 (194)
18 PF00578 AhpC-TSA: AhpC/TSA fa 99.9 6.8E-25 1.5E-29 179.5 14.3 124 243-376 1-124 (124)
19 PRK00522 tpx lipid hydroperoxi 99.9 3.7E-25 7.9E-30 190.6 13.1 131 50-194 17-149 (167)
20 PTZ00137 2-Cys peroxiredoxin; 99.9 9.6E-25 2.1E-29 198.2 16.3 139 240-379 67-206 (261)
21 PRK13189 peroxiredoxin; Provis 99.9 4.5E-25 9.6E-30 198.0 13.5 144 50-205 8-152 (222)
22 PF00578 AhpC-TSA: AhpC/TSA fa 99.9 3.2E-25 6.9E-30 181.5 11.4 123 53-190 1-123 (124)
23 cd03013 PRX5_like Peroxiredoxi 99.9 5.4E-25 1.2E-29 186.9 13.2 134 53-194 1-139 (155)
24 PRK15000 peroxidase; Provision 99.9 1.6E-24 3.6E-29 191.3 16.7 137 242-379 3-143 (200)
25 cd03018 PRX_AhpE_like Peroxire 99.9 1.3E-24 2.9E-29 183.8 14.5 130 242-381 2-134 (149)
26 PTZ00253 tryparedoxin peroxida 99.9 2E-24 4.3E-29 191.4 16.2 139 241-379 6-145 (199)
27 PRK13190 putative peroxiredoxi 99.9 2E-24 4.4E-29 191.4 15.8 133 241-378 2-134 (202)
28 PRK09437 bcp thioredoxin-depen 99.9 7.5E-25 1.6E-29 186.4 12.4 137 50-196 3-140 (154)
29 cd03014 PRX_Atyp2cys Peroxired 99.9 3E-24 6.5E-29 180.4 15.8 125 243-379 2-128 (143)
30 PF08534 Redoxin: Redoxin; In 99.9 2E-24 4.4E-29 182.1 14.4 131 242-381 1-135 (146)
31 cd03018 PRX_AhpE_like Peroxire 99.9 7.6E-25 1.6E-29 185.3 11.8 131 51-196 1-134 (149)
32 PRK00522 tpx lipid hydroperoxi 99.9 5.8E-24 1.3E-28 183.1 16.0 128 239-378 16-148 (167)
33 cd03016 PRX_1cys Peroxiredoxin 99.9 1.7E-24 3.7E-29 192.2 12.9 141 53-204 1-142 (203)
34 PRK13599 putative peroxiredoxi 99.9 6.4E-24 1.4E-28 189.3 15.7 135 241-379 2-137 (215)
35 PRK13191 putative peroxiredoxi 99.9 7.5E-24 1.6E-28 189.0 16.0 137 240-380 6-143 (215)
36 PRK09437 bcp thioredoxin-depen 99.9 8E-24 1.7E-28 180.1 14.5 129 241-379 4-138 (154)
37 cd03017 PRX_BCP Peroxiredoxin 99.9 7.6E-24 1.6E-28 177.2 13.6 126 245-380 1-129 (140)
38 PF08534 Redoxin: Redoxin; In 99.9 3.7E-24 8.1E-29 180.5 10.4 136 52-197 1-136 (146)
39 cd03017 PRX_BCP Peroxiredoxin 99.9 5.8E-24 1.3E-28 177.9 11.3 130 55-196 1-130 (140)
40 cd03016 PRX_1cys Peroxiredoxin 99.9 5.3E-23 1.1E-27 182.7 15.2 132 243-379 1-135 (203)
41 cd02971 PRX_family Peroxiredox 99.9 9E-23 2E-27 170.6 15.3 127 246-381 1-130 (140)
42 PRK13189 peroxiredoxin; Provis 99.9 8.3E-23 1.8E-27 183.3 15.5 134 241-379 9-144 (222)
43 cd03013 PRX5_like Peroxiredoxi 99.9 1.3E-22 2.9E-27 172.3 15.4 132 243-382 1-142 (155)
44 cd02971 PRX_family Peroxiredox 99.9 8.1E-23 1.8E-27 170.9 13.2 131 56-197 1-131 (140)
45 KOG0852|consensus 99.9 8.1E-23 1.7E-27 168.2 12.0 136 50-190 3-138 (196)
46 cd02970 PRX_like2 Peroxiredoxi 99.9 8.1E-23 1.8E-27 172.6 10.3 129 56-194 1-148 (149)
47 cd02970 PRX_like2 Peroxiredoxi 99.9 3.5E-22 7.6E-27 168.7 12.8 124 246-379 1-148 (149)
48 PRK15412 thiol:disulfide inter 99.9 6.3E-22 1.4E-26 173.4 14.1 120 241-379 39-161 (185)
49 PTZ00056 glutathione peroxidas 99.9 2.4E-22 5.3E-27 177.5 11.4 135 52-197 14-166 (199)
50 cd03012 TlpA_like_DipZ_like Tl 99.9 3.3E-22 7.1E-27 164.3 11.0 107 259-379 12-124 (126)
51 cd00340 GSH_Peroxidase Glutath 99.9 2.9E-22 6.3E-27 170.1 10.7 121 247-379 2-141 (152)
52 cd00340 GSH_Peroxidase Glutath 99.9 2.1E-22 4.5E-27 171.0 7.7 131 57-198 2-145 (152)
53 PLN02412 probable glutathione 99.9 6.4E-22 1.4E-26 170.3 9.4 133 55-198 7-153 (167)
54 PRK03147 thiol-disulfide oxido 99.9 9E-21 1.9E-25 164.4 16.6 126 237-379 31-157 (173)
55 PLN02399 phospholipid hydroper 99.9 2E-21 4.2E-26 174.5 12.4 127 242-379 74-219 (236)
56 PLN02399 phospholipid hydroper 99.9 8.4E-22 1.8E-26 176.8 9.9 138 50-198 72-223 (236)
57 PTZ00056 glutathione peroxidas 99.9 4.3E-21 9.3E-26 169.5 13.2 126 242-378 14-162 (199)
58 PLN02412 probable glutathione 99.9 3.5E-21 7.5E-26 165.8 11.8 123 245-378 7-148 (167)
59 KOG0852|consensus 99.9 1.2E-20 2.6E-25 155.4 14.0 138 242-379 5-142 (196)
60 PTZ00256 glutathione peroxidas 99.9 2.5E-21 5.5E-26 169.2 10.7 135 53-197 16-169 (183)
61 cd02969 PRX_like1 Peroxiredoxi 99.9 6.6E-21 1.4E-25 165.0 12.9 118 244-378 1-127 (171)
62 cd03012 TlpA_like_DipZ_like Tl 99.8 1.8E-21 3.9E-26 159.9 8.2 107 70-195 13-125 (126)
63 TIGR02540 gpx7 putative glutat 99.8 3.1E-21 6.6E-26 164.0 9.8 119 247-379 2-138 (153)
64 TIGR00385 dsbE periplasmic pro 99.8 1.4E-20 3E-25 163.2 14.0 118 241-379 34-156 (173)
65 TIGR02540 gpx7 putative glutat 99.8 2.3E-21 5E-26 164.7 8.0 128 58-198 3-142 (153)
66 cd02968 SCO SCO (an acronym fo 99.8 1.7E-20 3.7E-25 157.2 13.0 122 246-378 1-141 (142)
67 TIGR02661 MauD methylamine deh 99.8 5.4E-20 1.2E-24 161.6 15.6 115 241-376 46-162 (189)
68 cd02968 SCO SCO (an acronym fo 99.8 9.7E-21 2.1E-25 158.7 10.3 127 56-193 1-141 (142)
69 cd03010 TlpA_like_DsbE TlpA-li 99.8 2.4E-20 5.2E-25 153.4 11.3 114 246-379 2-119 (127)
70 cd03008 TryX_like_RdCVF Trypar 99.8 1.8E-20 3.8E-25 156.1 10.0 102 261-376 16-128 (146)
71 PRK15412 thiol:disulfide inter 99.8 5.7E-21 1.2E-25 167.3 7.5 124 50-197 38-164 (185)
72 cd02967 mauD Methylamine utili 99.8 6.3E-20 1.4E-24 147.8 12.1 109 248-376 1-111 (114)
73 cd02969 PRX_like1 Peroxiredoxi 99.8 2.4E-20 5.1E-25 161.6 10.1 115 54-190 1-124 (171)
74 PTZ00256 glutathione peroxidas 99.8 4.5E-20 9.7E-25 161.3 11.3 126 243-379 16-166 (183)
75 cd03010 TlpA_like_DsbE TlpA-li 99.8 2.4E-20 5.3E-25 153.3 8.3 118 55-197 1-122 (127)
76 PRK03147 thiol-disulfide oxido 99.8 1.1E-19 2.4E-24 157.5 11.3 127 48-196 32-159 (173)
77 TIGR02661 MauD methylamine deh 99.8 1.2E-19 2.6E-24 159.4 10.7 116 49-190 44-161 (189)
78 KOG0854|consensus 99.8 1.5E-19 3.2E-24 148.7 9.1 152 50-208 5-160 (224)
79 TIGR00385 dsbE periplasmic pro 99.8 9E-20 1.9E-24 158.1 8.0 121 50-196 33-158 (173)
80 cd02967 mauD Methylamine utili 99.8 3.4E-19 7.3E-24 143.6 10.5 108 58-190 1-110 (114)
81 KOG0855|consensus 99.8 2.4E-19 5.2E-24 146.3 9.2 133 50-196 62-195 (211)
82 PRK14018 trifunctional thiored 99.8 1.1E-18 2.4E-23 172.5 15.8 120 241-379 32-158 (521)
83 cd03008 TryX_like_RdCVF Trypar 99.8 1.8E-19 3.9E-24 150.0 7.5 101 71-190 16-127 (146)
84 cd02966 TlpA_like_family TlpA- 99.8 2E-18 4.4E-23 138.1 11.2 112 250-378 2-115 (116)
85 TIGR01626 ytfJ_HI0045 conserve 99.8 2.6E-18 5.7E-23 148.0 11.9 125 242-380 24-166 (184)
86 cd02964 TryX_like_family Trypa 99.8 2.7E-18 5.9E-23 142.1 11.1 105 257-377 5-116 (132)
87 cd03009 TryX_like_TryX_NRX Try 99.8 1.7E-18 3.6E-23 143.2 8.2 108 257-377 5-116 (131)
88 cd03011 TlpA_like_ScsD_MtbDsbE 99.7 8.9E-18 1.9E-22 137.1 11.0 108 248-378 1-110 (123)
89 PRK14018 trifunctional thiored 99.7 7.6E-18 1.7E-22 166.5 10.8 123 51-197 32-161 (521)
90 PF02630 SCO1-SenC: SCO1/SenC; 99.7 3.9E-17 8.4E-22 141.4 13.3 127 243-379 28-173 (174)
91 cd03011 TlpA_like_ScsD_MtbDsbE 99.7 9.4E-18 2E-22 137.0 8.7 113 58-198 1-115 (123)
92 TIGR01626 ytfJ_HI0045 conserve 99.7 3.8E-18 8.2E-23 147.0 6.3 130 50-197 22-168 (184)
93 cd02966 TlpA_like_family TlpA- 99.7 1.5E-17 3.2E-22 133.0 9.3 113 59-193 1-115 (116)
94 PLN02919 haloacid dehalogenase 99.7 1.7E-17 3.7E-22 179.0 10.9 122 242-378 392-520 (1057)
95 PRK13728 conjugal transfer pro 99.7 5.1E-17 1.1E-21 139.2 10.8 108 243-383 51-159 (181)
96 PRK10606 btuE putative glutath 99.7 7.2E-17 1.6E-21 139.9 11.6 123 245-379 3-164 (183)
97 cd03009 TryX_like_TryX_NRX Try 99.7 2E-17 4.3E-22 136.8 6.5 109 67-192 5-116 (131)
98 KOG0855|consensus 99.7 1.5E-16 3.3E-21 130.0 11.1 130 240-379 62-193 (211)
99 cd02964 TryX_like_family Trypa 99.7 7.4E-17 1.6E-21 133.5 9.2 104 67-191 5-115 (132)
100 PLN02919 haloacid dehalogenase 99.7 3.5E-17 7.6E-22 176.6 8.3 129 51-196 391-523 (1057)
101 PRK10606 btuE putative glutath 99.7 5.9E-16 1.3E-20 134.2 11.3 87 55-152 3-97 (183)
102 PF13905 Thioredoxin_8: Thiore 99.7 7.3E-16 1.6E-20 119.9 10.8 90 270-373 1-95 (95)
103 COG2077 Tpx Peroxiredoxin [Pos 99.7 7.4E-16 1.6E-20 124.6 10.9 127 50-190 17-145 (158)
104 PRK13728 conjugal transfer pro 99.6 7.2E-16 1.6E-20 132.1 8.3 108 52-197 50-159 (181)
105 COG1999 Uncharacterized protei 99.6 2.2E-14 4.7E-19 127.2 15.6 124 249-382 49-192 (207)
106 KOG0854|consensus 99.6 4.5E-15 9.8E-20 122.5 10.3 136 242-381 7-151 (224)
107 COG2077 Tpx Peroxiredoxin [Pos 99.6 1.4E-14 3.1E-19 117.2 12.7 130 237-378 14-148 (158)
108 PF02630 SCO1-SenC: SCO1/SenC; 99.6 6.9E-15 1.5E-19 127.3 8.5 131 53-193 28-172 (174)
109 TIGR02738 TrbB type-F conjugat 99.6 2.6E-14 5.7E-19 120.4 10.9 94 259-382 43-140 (153)
110 PF13905 Thioredoxin_8: Thiore 99.5 9.1E-15 2E-19 113.7 6.6 90 80-188 1-95 (95)
111 COG0678 AHP1 Peroxiredoxin [Po 99.4 1.8E-12 3.8E-17 104.8 10.4 134 50-189 2-142 (165)
112 TIGR02738 TrbB type-F conjugat 99.4 5.7E-13 1.2E-17 112.3 6.9 96 69-196 43-140 (153)
113 COG1999 Uncharacterized protei 99.4 1.7E-12 3.6E-17 115.2 8.6 132 59-196 49-191 (207)
114 KOG0541|consensus 99.3 3.8E-12 8.1E-17 103.5 8.3 138 48-191 6-150 (171)
115 KOG2792|consensus 99.3 2.4E-11 5.2E-16 107.1 13.2 121 248-378 120-259 (280)
116 KOG2501|consensus 99.3 1.4E-11 3E-16 101.9 7.1 108 257-375 19-130 (157)
117 KOG2792|consensus 99.2 2.8E-11 6.1E-16 106.6 8.9 133 49-191 114-257 (280)
118 TIGR02740 TraF-like TraF-like 99.2 3E-11 6.6E-16 111.6 8.2 90 259-375 155-245 (271)
119 cd02985 TRX_CDSP32 TRX family, 99.2 9E-11 2E-15 92.6 9.5 79 267-380 12-90 (103)
120 cd02950 TxlA TRX-like protein 99.2 3.1E-11 6.7E-16 100.9 6.7 87 259-379 7-95 (142)
121 TIGR02740 TraF-like TraF-like 99.1 1.5E-10 3.1E-15 107.1 5.4 110 55-196 139-251 (271)
122 cd02999 PDI_a_ERp44_like PDIa 99.1 7.7E-10 1.7E-14 86.7 8.4 75 266-378 14-88 (100)
123 cd02950 TxlA TRX-like protein 99.0 1.9E-10 4E-15 96.2 4.7 89 69-196 7-97 (142)
124 COG0678 AHP1 Peroxiredoxin [Po 99.0 5.4E-09 1.2E-13 84.8 12.8 136 242-383 4-151 (165)
125 COG0386 BtuE Glutathione perox 99.0 4.5E-09 9.7E-14 85.9 11.4 123 246-379 4-145 (162)
126 cd02951 SoxW SoxW family; SoxW 99.0 1.3E-09 2.7E-14 89.2 7.2 88 269-379 12-104 (125)
127 cd02985 TRX_CDSP32 TRX family, 99.0 1.9E-09 4.2E-14 85.0 7.8 81 76-196 11-91 (103)
128 cd02948 TRX_NDPK TRX domain, T 98.9 4.7E-09 1E-13 82.6 8.4 77 269-382 16-92 (102)
129 KOG2501|consensus 98.9 4E-09 8.6E-14 87.4 7.8 102 69-189 21-129 (157)
130 COG0386 BtuE Glutathione perox 98.9 5.7E-09 1.2E-13 85.3 8.3 129 57-196 5-147 (162)
131 cd02963 TRX_DnaJ TRX domain, D 98.9 1.2E-08 2.5E-13 81.7 9.9 75 268-378 22-96 (111)
132 cd02956 ybbN ybbN protein fami 98.9 1.3E-08 2.9E-13 78.8 8.9 74 269-379 11-84 (96)
133 cd02999 PDI_a_ERp44_like PDIa 98.8 1.7E-08 3.6E-13 79.1 7.3 44 76-122 14-57 (100)
134 cd02951 SoxW SoxW family; SoxW 98.8 1.1E-08 2.4E-13 83.6 6.3 90 79-196 12-106 (125)
135 KOG0541|consensus 98.8 7.4E-08 1.6E-12 78.7 10.8 136 241-381 9-155 (171)
136 cd02953 DsbDgamma DsbD gamma f 98.8 2.6E-08 5.7E-13 78.5 7.2 78 269-378 10-91 (104)
137 cd02954 DIM1 Dim1 family; Dim1 98.7 1E-07 2.3E-12 75.7 9.6 73 269-378 13-85 (114)
138 cd02993 PDI_a_APS_reductase PD 98.7 6.4E-08 1.4E-12 77.1 8.2 78 269-380 20-98 (109)
139 PRK09381 trxA thioredoxin; Pro 98.7 8.2E-08 1.8E-12 76.3 8.7 74 269-379 20-93 (109)
140 PF13098 Thioredoxin_2: Thiore 98.7 1.7E-08 3.6E-13 80.7 4.5 94 269-378 4-100 (112)
141 cd02963 TRX_DnaJ TRX domain, D 98.7 8.1E-08 1.8E-12 76.8 7.6 46 77-123 21-66 (111)
142 TIGR02187 GlrX_arch Glutaredox 98.7 1.7E-07 3.7E-12 84.1 10.2 45 77-123 16-62 (215)
143 PTZ00051 thioredoxin; Provisio 98.6 2.4E-07 5.3E-12 72.0 9.2 75 269-381 17-91 (98)
144 cd03003 PDI_a_ERdj5_N PDIa fam 98.6 9.6E-08 2.1E-12 74.8 6.7 73 269-378 17-89 (101)
145 cd02959 ERp19 Endoplasmic reti 98.6 6.1E-08 1.3E-12 78.2 5.7 50 263-314 12-61 (117)
146 KOG1651|consensus 98.6 2.9E-07 6.2E-12 76.4 9.5 125 245-379 12-154 (171)
147 cd02994 PDI_a_TMX PDIa family, 98.6 2.1E-07 4.6E-12 72.8 8.5 72 269-378 16-87 (101)
148 cd02962 TMX2 TMX2 family; comp 98.6 1.7E-07 3.8E-12 78.8 8.3 46 269-315 46-91 (152)
149 KOG0907|consensus 98.6 3.3E-07 7.1E-12 72.2 9.0 75 269-381 20-94 (106)
150 PHA02278 thioredoxin-like prot 98.6 4.5E-07 9.8E-12 71.2 9.5 78 269-379 13-90 (103)
151 cd02949 TRX_NTR TRX domain, no 98.6 5.2E-07 1.1E-11 70.1 9.7 74 269-379 12-85 (97)
152 cd02952 TRP14_like Human TRX-r 98.6 1.8E-07 3.9E-12 75.2 7.0 78 269-375 20-105 (119)
153 cd03002 PDI_a_MPD1_like PDI fa 98.6 2.3E-07 5.1E-12 73.5 7.4 69 269-371 17-85 (109)
154 KOG0910|consensus 98.6 3.5E-07 7.6E-12 75.2 8.4 73 269-378 60-132 (150)
155 cd02956 ybbN ybbN protein fami 98.6 2.3E-07 4.9E-12 71.9 7.0 43 79-123 11-53 (96)
156 cd02953 DsbDgamma DsbD gamma f 98.5 2.4E-07 5.1E-12 73.0 7.2 81 79-196 10-94 (104)
157 cd02948 TRX_NDPK TRX domain, T 98.5 1.6E-07 3.4E-12 73.9 6.1 44 79-123 16-59 (102)
158 cd03004 PDI_a_ERdj5_C PDIa fam 98.5 4.2E-07 9.2E-12 71.5 8.7 75 269-379 18-92 (104)
159 PRK10996 thioredoxin 2; Provis 98.5 5E-07 1.1E-11 75.2 9.3 74 269-379 51-124 (139)
160 cd03000 PDI_a_TMX3 PDIa family 98.5 2.9E-07 6.3E-12 72.6 7.4 69 269-373 14-84 (104)
161 PF13098 Thioredoxin_2: Thiore 98.5 2E-08 4.2E-13 80.3 0.6 98 79-198 4-105 (112)
162 cd03005 PDI_a_ERp46 PDIa famil 98.5 3.8E-07 8.2E-12 71.3 8.0 72 272-379 18-91 (102)
163 cd02997 PDI_a_PDIR PDIa family 98.5 5.8E-07 1.3E-11 70.5 8.6 76 269-378 16-92 (104)
164 cd02984 TRX_PICOT TRX domain, 98.5 7.6E-07 1.6E-11 69.0 9.0 73 270-379 14-86 (97)
165 PF00255 GSHPx: Glutathione pe 98.5 5.9E-07 1.3E-11 70.7 8.2 81 59-150 3-91 (108)
166 cd02996 PDI_a_ERp44 PDIa famil 98.5 6.6E-07 1.4E-11 71.0 8.7 78 269-382 17-99 (108)
167 PF00837 T4_deiodinase: Iodoth 98.5 3E-07 6.6E-12 81.5 7.1 124 48-194 70-218 (237)
168 PF00837 T4_deiodinase: Iodoth 98.5 1.7E-06 3.7E-11 76.8 11.6 119 241-376 73-216 (237)
169 KOG1651|consensus 98.5 5.4E-07 1.2E-11 74.8 7.7 132 55-196 12-156 (171)
170 cd03006 PDI_a_EFP1_N PDIa fami 98.5 8.8E-07 1.9E-11 70.8 8.6 44 269-314 28-71 (113)
171 PF00255 GSHPx: Glutathione pe 98.4 1.4E-06 2.9E-11 68.7 8.7 81 249-340 3-91 (108)
172 TIGR01126 pdi_dom protein disu 98.4 9.5E-07 2E-11 68.9 7.6 74 269-378 12-86 (102)
173 cd02986 DLP Dim1 family, Dim1- 98.4 2.1E-06 4.6E-11 67.9 9.2 46 269-316 13-58 (114)
174 cd02998 PDI_a_ERp38 PDIa famil 98.4 1.1E-06 2.4E-11 68.8 6.9 76 269-378 17-93 (105)
175 PRK09381 trxA thioredoxin; Pro 98.4 1E-06 2.2E-11 69.9 6.7 43 79-123 20-62 (109)
176 cd02962 TMX2 TMX2 family; comp 98.4 1.3E-06 2.8E-11 73.5 7.5 45 79-124 46-90 (152)
177 cd02954 DIM1 Dim1 family; Dim1 98.3 2.3E-06 4.9E-11 68.1 7.2 44 79-124 13-56 (114)
178 cd03003 PDI_a_ERdj5_N PDIa fam 98.3 1.7E-06 3.7E-11 67.7 6.3 44 79-124 17-60 (101)
179 PTZ00443 Thioredoxin domain-co 98.3 3.3E-06 7.1E-11 75.7 8.8 70 270-376 52-121 (224)
180 cd02952 TRP14_like Human TRX-r 98.3 1.6E-06 3.4E-11 69.8 6.0 44 79-124 20-70 (119)
181 cd02961 PDI_a_family Protein D 98.3 2.6E-06 5.6E-11 65.8 6.9 75 269-378 14-89 (101)
182 TIGR01295 PedC_BrcD bacterioci 98.2 7.3E-06 1.6E-10 66.5 9.2 42 269-314 22-63 (122)
183 cd02994 PDI_a_TMX PDIa family, 98.2 3.3E-06 7.1E-11 66.0 7.0 41 79-121 16-56 (101)
184 TIGR01068 thioredoxin thioredo 98.2 5.4E-06 1.2E-10 64.3 8.1 72 270-378 14-85 (101)
185 PLN00410 U5 snRNP protein, DIM 98.2 6.2E-06 1.4E-10 68.2 8.7 44 269-314 22-65 (142)
186 cd02965 HyaE HyaE family; HyaE 98.2 7.1E-06 1.5E-10 64.8 8.6 78 269-384 26-105 (111)
187 cd03002 PDI_a_MPD1_like PDI fa 98.2 3.4E-06 7.5E-11 66.8 7.0 44 79-124 17-60 (109)
188 cd02949 TRX_NTR TRX domain, no 98.2 5.2E-06 1.1E-10 64.5 7.7 43 79-123 12-54 (97)
189 PRK10996 thioredoxin 2; Provis 98.2 5.1E-06 1.1E-10 69.2 8.0 76 79-196 51-126 (139)
190 cd02989 Phd_like_TxnDC9 Phosdu 98.2 2E-05 4.3E-10 63.1 10.5 72 269-378 21-92 (113)
191 PTZ00051 thioredoxin; Provisio 98.2 7E-06 1.5E-10 63.6 7.7 74 79-195 17-90 (98)
192 cd02959 ERp19 Endoplasmic reti 98.2 4.4E-06 9.5E-11 67.3 6.4 49 74-124 13-61 (117)
193 cd02997 PDI_a_PDIR PDIa family 98.2 6.6E-06 1.4E-10 64.4 7.3 44 79-123 16-60 (104)
194 cd02957 Phd_like Phosducin (Ph 98.2 1.5E-05 3.2E-10 63.8 9.3 70 270-378 24-93 (113)
195 PF00085 Thioredoxin: Thioredo 98.2 1.8E-05 3.9E-10 61.6 9.6 74 269-379 16-89 (103)
196 cd03001 PDI_a_P5 PDIa family, 98.2 9.8E-06 2.1E-10 63.3 8.0 65 270-370 18-82 (103)
197 cd03004 PDI_a_ERdj5_C PDIa fam 98.1 1E-05 2.2E-10 63.6 7.8 44 79-124 18-61 (104)
198 cd02984 TRX_PICOT TRX domain, 98.1 8.4E-06 1.8E-10 63.0 7.2 40 80-121 14-53 (97)
199 PF05988 DUF899: Bacterial pro 98.1 1.9E-05 4.1E-10 68.8 9.9 126 53-194 42-174 (211)
200 cd03005 PDI_a_ERp46 PDIa famil 98.1 6.2E-06 1.3E-10 64.3 6.4 40 82-122 18-59 (102)
201 cd02947 TRX_family TRX family; 98.1 2.9E-05 6.2E-10 58.6 9.9 71 271-379 11-81 (93)
202 cd02992 PDI_a_QSOX PDIa family 98.1 1.3E-05 2.7E-10 64.3 7.9 42 270-312 19-62 (114)
203 PF13728 TraF: F plasmid trans 98.1 1.5E-05 3.3E-10 71.2 9.0 91 263-380 113-203 (215)
204 cd02993 PDI_a_APS_reductase PD 98.1 8.1E-06 1.8E-10 64.9 6.5 45 79-124 20-64 (109)
205 PRK00293 dipZ thiol:disulfide 98.1 5.4E-06 1.2E-10 84.9 6.3 76 266-374 470-548 (571)
206 TIGR00424 APS_reduc 5'-adenyly 98.1 1.5E-05 3.2E-10 78.7 9.1 45 269-314 370-414 (463)
207 PF05988 DUF899: Bacterial pro 98.0 6.2E-05 1.3E-09 65.6 11.0 123 245-379 44-174 (211)
208 cd03065 PDI_b_Calsequestrin_N 98.0 4.4E-05 9.5E-10 61.6 9.5 71 271-378 28-103 (120)
209 cd02955 SSP411 TRX domain, SSP 98.0 2.6E-05 5.6E-10 63.4 8.2 85 265-378 10-98 (124)
210 PF13911 AhpC-TSA_2: AhpC/TSA 98.0 5.5E-05 1.2E-09 60.7 10.0 81 293-380 2-114 (115)
211 cd02998 PDI_a_ERp38 PDIa famil 98.0 1.6E-05 3.5E-10 62.1 6.8 44 80-124 18-62 (105)
212 cd02975 PfPDO_like_N Pyrococcu 98.0 4.3E-05 9.4E-10 61.1 9.0 63 270-369 22-84 (113)
213 KOG0907|consensus 98.0 9.2E-06 2E-10 64.0 4.8 42 80-124 21-62 (106)
214 KOG0910|consensus 98.0 1.5E-05 3.2E-10 65.7 6.1 43 80-124 61-103 (150)
215 cd03000 PDI_a_TMX3 PDIa family 98.0 1.7E-05 3.8E-10 62.3 6.3 35 79-114 14-48 (104)
216 cd03006 PDI_a_EFP1_N PDIa fami 98.0 1.9E-05 4.1E-10 63.1 6.4 44 79-124 28-71 (113)
217 TIGR01126 pdi_dom protein disu 98.0 2.1E-05 4.5E-10 61.2 6.3 41 79-120 12-53 (102)
218 COG3118 Thioredoxin domain-con 97.9 2.2E-05 4.7E-10 71.7 7.0 73 269-378 42-114 (304)
219 PF13728 TraF: F plasmid trans 97.9 2.1E-05 4.6E-10 70.3 6.9 92 72-195 112-204 (215)
220 cd02986 DLP Dim1 family, Dim1- 97.9 2.8E-05 6.2E-10 61.5 5.8 44 79-124 13-56 (114)
221 TIGR02739 TraF type-F conjugat 97.9 5.8E-05 1.2E-09 68.8 8.3 91 263-380 143-233 (256)
222 TIGR01068 thioredoxin thioredo 97.9 4.5E-05 9.8E-10 59.0 6.7 42 80-123 14-55 (101)
223 PHA02278 thioredoxin-like prot 97.9 3.6E-05 7.7E-10 60.5 5.9 44 79-124 13-56 (103)
224 PTZ00102 disulphide isomerase; 97.8 0.00012 2.5E-09 73.8 11.1 70 269-373 48-119 (477)
225 PLN02309 5'-adenylylsulfate re 97.8 7.7E-05 1.7E-09 73.7 9.3 44 269-313 364-407 (457)
226 cd02987 Phd_like_Phd Phosducin 97.8 0.00011 2.3E-09 63.6 9.2 70 270-378 83-152 (175)
227 cd02961 PDI_a_family Protein D 97.8 5.3E-05 1.2E-09 58.3 6.6 44 79-123 14-58 (101)
228 PRK13703 conjugal pilus assemb 97.8 7.1E-05 1.5E-09 67.8 7.9 85 263-374 136-220 (248)
229 PTZ00443 Thioredoxin domain-co 97.8 4.3E-05 9.3E-10 68.5 6.5 39 80-120 52-90 (224)
230 TIGR00411 redox_disulf_1 small 97.8 0.00017 3.6E-09 53.8 8.4 39 273-313 2-40 (82)
231 PTZ00102 disulphide isomerase; 97.8 7.1E-05 1.5E-09 75.3 8.1 75 269-378 374-449 (477)
232 PRK00293 dipZ thiol:disulfide 97.8 3.8E-05 8.1E-10 78.7 5.9 84 75-196 469-557 (571)
233 cd02995 PDI_a_PDI_a'_C PDIa fa 97.8 9.6E-05 2.1E-09 57.6 7.0 44 269-313 17-61 (104)
234 PLN00410 U5 snRNP protein, DIM 97.7 6.3E-05 1.4E-09 62.3 5.8 44 79-124 22-65 (142)
235 PTZ00062 glutaredoxin; Provisi 97.7 0.00015 3.3E-09 64.0 8.1 40 271-313 18-57 (204)
236 TIGR02739 TraF type-F conjugat 97.7 9.2E-05 2E-09 67.5 6.7 83 72-186 142-224 (256)
237 cd02995 PDI_a_PDI_a'_C PDIa fa 97.6 0.00017 3.8E-09 56.1 7.0 44 80-124 18-62 (104)
238 cd02996 PDI_a_ERp44 PDIa famil 97.6 0.00017 3.7E-09 57.0 6.9 32 80-112 18-49 (108)
239 cd02988 Phd_like_VIAF Phosduci 97.6 0.00038 8.3E-09 61.1 9.1 41 270-313 102-142 (192)
240 PF09695 YtfJ_HI0045: Bacteria 97.6 0.00017 3.7E-09 59.9 6.2 138 52-201 2-150 (160)
241 cd02947 TRX_family TRX family; 97.6 0.00029 6.3E-09 53.0 7.2 41 81-124 11-51 (93)
242 cd02965 HyaE HyaE family; HyaE 97.6 0.00025 5.5E-09 56.1 6.9 44 79-124 26-71 (111)
243 TIGR01295 PedC_BrcD bacterioci 97.6 0.00015 3.3E-09 58.8 5.6 41 80-124 23-63 (122)
244 cd01659 TRX_superfamily Thiore 97.6 0.00042 9.1E-09 47.7 7.2 43 274-319 1-43 (69)
245 cd02960 AGR Anterior Gradient 97.5 0.00029 6.2E-09 57.4 7.0 28 265-293 18-45 (130)
246 COG4312 Uncharacterized protei 97.5 0.00051 1.1E-08 59.7 8.7 91 69-166 60-157 (247)
247 PRK13703 conjugal pilus assemb 97.5 0.00019 4E-09 65.1 6.3 86 72-189 135-221 (248)
248 TIGR01130 ER_PDI_fam protein d 97.5 0.00042 9.2E-09 69.2 9.0 73 269-377 17-92 (462)
249 cd02955 SSP411 TRX domain, SSP 97.5 0.00022 4.7E-09 58.0 5.5 44 78-123 13-59 (124)
250 cd02992 PDI_a_QSOX PDIa family 97.5 0.00051 1.1E-08 55.0 7.6 42 80-122 19-62 (114)
251 cd03065 PDI_b_Calsequestrin_N 97.5 0.00045 9.7E-09 55.7 7.1 43 81-124 28-75 (120)
252 PF00085 Thioredoxin: Thioredo 97.5 0.0003 6.6E-09 54.6 6.1 43 80-124 17-59 (103)
253 TIGR02187 GlrX_arch Glutaredox 97.5 0.00082 1.8E-08 60.2 9.5 73 268-375 17-91 (215)
254 TIGR00412 redox_disulf_2 small 97.4 0.0011 2.3E-08 48.9 8.5 27 274-301 2-28 (76)
255 PF09695 YtfJ_HI0045: Bacteria 97.4 0.0012 2.7E-08 54.9 9.5 125 243-378 3-142 (160)
256 TIGR00424 APS_reduc 5'-adenyly 97.4 0.00022 4.8E-09 70.5 5.6 45 79-124 370-414 (463)
257 PF04592 SelP_N: Selenoprotein 97.4 0.00086 1.9E-08 59.3 8.5 112 245-378 8-127 (238)
258 cd02958 UAS UAS family; UAS is 97.4 0.0015 3.2E-08 52.2 9.1 81 264-378 11-95 (114)
259 COG0526 TrxA Thiol-disulfide i 97.4 0.0003 6.4E-09 55.1 4.9 49 73-123 25-73 (127)
260 cd02989 Phd_like_TxnDC9 Phosdu 97.3 0.00081 1.8E-08 53.7 7.3 43 79-124 21-63 (113)
261 COG0526 TrxA Thiol-disulfide i 97.3 0.00045 9.8E-09 54.0 5.8 48 264-313 26-73 (127)
262 cd03001 PDI_a_P5 PDIa family, 97.3 0.00067 1.5E-08 52.8 6.7 42 80-123 18-59 (103)
263 cd02957 Phd_like Phosducin (Ph 97.3 0.00045 9.8E-09 55.1 5.5 41 80-123 24-64 (113)
264 cd02975 PfPDO_like_N Pyrococcu 97.3 0.00082 1.8E-08 53.7 6.9 42 80-124 22-63 (113)
265 cd03026 AhpF_NTD_C TRX-GRX-lik 97.3 0.0016 3.5E-08 49.6 8.1 70 266-375 8-77 (89)
266 cd02960 AGR Anterior Gradient 97.2 0.00057 1.2E-08 55.7 4.9 25 78-103 21-45 (130)
267 COG3118 Thioredoxin domain-con 97.2 0.00062 1.3E-08 62.4 5.4 44 79-124 42-85 (304)
268 COG4312 Uncharacterized protei 97.2 0.0026 5.6E-08 55.4 8.9 87 259-353 61-154 (247)
269 PF04592 SelP_N: Selenoprotein 97.1 0.00098 2.1E-08 59.0 6.1 111 55-189 8-123 (238)
270 KOG0191|consensus 97.1 0.0025 5.4E-08 62.3 9.7 42 271-313 163-205 (383)
271 PLN02309 5'-adenylylsulfate re 97.1 0.00071 1.5E-08 67.0 5.5 44 79-123 364-407 (457)
272 PF13899 Thioredoxin_7: Thiore 97.0 0.0033 7.2E-08 46.9 7.5 50 266-317 13-65 (82)
273 PF05176 ATP-synt_10: ATP10 pr 97.0 0.0043 9.4E-08 56.7 9.3 121 245-375 99-231 (252)
274 PF13899 Thioredoxin_7: Thiore 97.0 0.003 6.6E-08 47.2 6.7 50 78-129 15-67 (82)
275 cd02982 PDI_b'_family Protein 96.9 0.0019 4.2E-08 50.2 5.6 43 270-314 12-54 (103)
276 TIGR01130 ER_PDI_fam protein d 96.9 0.0021 4.6E-08 64.1 7.2 44 269-313 363-408 (462)
277 PF14595 Thioredoxin_9: Thiore 96.9 0.0013 2.7E-08 53.9 4.6 81 265-379 36-116 (129)
278 PF13911 AhpC-TSA_2: AhpC/TSA 96.9 0.0022 4.9E-08 51.2 5.8 53 103-162 2-54 (115)
279 cd02987 Phd_like_Phd Phosducin 96.8 0.0024 5.3E-08 55.2 5.9 42 80-124 83-124 (175)
280 TIGR00411 redox_disulf_1 small 96.8 0.0031 6.8E-08 46.7 5.8 39 83-123 2-40 (82)
281 PF05176 ATP-synt_10: ATP10 pr 96.8 0.0021 4.6E-08 58.7 5.6 135 53-201 97-242 (252)
282 cd02958 UAS UAS family; UAS is 96.8 0.0037 8E-08 49.9 6.2 84 76-198 13-100 (114)
283 PHA02125 thioredoxin-like prot 96.8 0.009 2E-07 43.8 7.7 22 274-296 2-23 (75)
284 cd01659 TRX_superfamily Thiore 96.7 0.0058 1.3E-07 41.7 5.8 44 84-130 1-44 (69)
285 cd02973 TRX_GRX_like Thioredox 96.7 0.0091 2E-07 42.5 6.9 38 273-313 2-39 (67)
286 cd02982 PDI_b'_family Protein 96.6 0.0048 1E-07 47.9 5.8 44 79-124 11-54 (103)
287 TIGR00412 redox_disulf_2 small 96.6 0.0057 1.2E-07 45.0 5.4 27 84-111 2-28 (76)
288 smart00594 UAS UAS domain. 96.5 0.015 3.3E-07 47.0 8.1 74 264-371 21-97 (122)
289 cd02988 Phd_like_VIAF Phosduci 96.4 0.0055 1.2E-07 53.8 5.3 41 80-123 102-142 (192)
290 KOG0908|consensus 96.4 0.0037 8E-08 55.7 4.1 47 75-124 16-62 (288)
291 KOG4498|consensus 96.4 0.023 4.9E-07 48.6 8.6 118 257-381 36-180 (197)
292 KOG0908|consensus 96.3 0.0044 9.6E-08 55.2 3.9 42 269-313 20-61 (288)
293 PTZ00062 glutaredoxin; Provisi 96.1 0.0097 2.1E-07 52.6 5.2 39 81-122 18-56 (204)
294 cd02973 TRX_GRX_like Thioredox 96.0 0.031 6.6E-07 39.7 6.6 38 84-124 3-40 (67)
295 cd03026 AhpF_NTD_C TRX-GRX-lik 95.6 0.037 8.1E-07 42.0 5.8 45 76-123 8-52 (89)
296 PF14595 Thioredoxin_9: Thiore 95.5 0.0081 1.8E-07 49.1 2.0 47 75-124 36-82 (129)
297 KOG4498|consensus 95.4 0.037 8E-07 47.3 5.7 86 69-161 38-124 (197)
298 PHA02125 thioredoxin-like prot 95.4 0.047 1E-06 39.9 5.7 21 84-105 2-22 (75)
299 TIGR02200 GlrX_actino Glutared 94.9 0.053 1.1E-06 39.4 4.8 33 84-124 2-34 (77)
300 KOG1278|consensus 94.9 0.0012 2.7E-08 64.9 -5.2 73 170-242 360-432 (628)
301 PRK11657 dsbG disulfide isomer 94.6 0.13 2.9E-06 47.1 7.7 31 267-298 114-144 (251)
302 TIGR02200 GlrX_actino Glutared 94.6 0.083 1.8E-06 38.3 5.2 34 274-315 2-35 (77)
303 TIGR02196 GlrX_YruB Glutaredox 94.5 0.13 2.8E-06 36.7 5.9 54 85-152 3-57 (74)
304 smart00594 UAS UAS domain. 94.4 0.17 3.8E-06 40.8 7.0 47 77-125 24-73 (122)
305 COG2143 Thioredoxin-related pr 94.0 0.14 3E-06 42.6 5.5 96 78-198 40-138 (182)
306 KOG0190|consensus 93.7 0.075 1.6E-06 52.8 4.2 34 269-303 383-416 (493)
307 TIGR02196 GlrX_YruB Glutaredox 93.6 0.27 5.9E-06 34.9 6.1 32 275-314 3-34 (74)
308 COG4232 Thiol:disulfide interc 93.5 0.072 1.6E-06 53.6 3.7 41 77-118 471-512 (569)
309 KOG0190|consensus 93.0 0.11 2.4E-06 51.6 4.1 34 79-113 383-416 (493)
310 PF13778 DUF4174: Domain of un 92.9 0.28 6.1E-06 39.4 5.7 94 264-378 2-96 (118)
311 PF06110 DUF953: Eukaryotic pr 92.7 0.23 5E-06 39.9 4.9 46 79-125 18-69 (119)
312 cd02991 UAS_ETEA UAS family, E 92.4 0.7 1.5E-05 36.9 7.4 78 264-378 11-97 (116)
313 PF06110 DUF953: Eukaryotic pr 92.2 0.36 7.8E-06 38.7 5.4 46 269-315 18-69 (119)
314 COG4232 Thiol:disulfide interc 91.9 0.24 5.1E-06 50.0 4.8 42 269-311 473-515 (569)
315 COG2143 Thioredoxin-related pr 91.8 0.7 1.5E-05 38.5 6.7 92 267-378 39-133 (182)
316 PF03190 Thioredox_DsbH: Prote 91.7 0.4 8.8E-06 40.6 5.4 29 261-290 28-56 (163)
317 KOG1277|consensus 91.5 0.022 4.7E-07 55.1 -2.7 73 170-242 324-396 (593)
318 cd03007 PDI_a_ERp29_N PDIa fam 91.4 0.51 1.1E-05 37.7 5.4 30 80-112 18-47 (116)
319 PRK10877 protein disulfide iso 91.2 0.92 2E-05 41.1 7.7 37 269-310 106-142 (232)
320 cd03007 PDI_a_ERp29_N PDIa fam 91.0 0.76 1.6E-05 36.7 6.1 31 269-302 17-47 (116)
321 PF13778 DUF4174: Domain of un 90.7 0.33 7.2E-06 38.9 3.9 92 74-191 2-94 (118)
322 KOG0912|consensus 90.7 0.38 8.3E-06 44.4 4.6 33 270-303 13-45 (375)
323 KOG3425|consensus 90.7 0.67 1.5E-05 36.8 5.3 49 75-124 19-75 (128)
324 PF13192 Thioredoxin_3: Thiore 90.7 1.8 3.9E-05 31.5 7.5 21 280-300 7-27 (76)
325 KOG0191|consensus 90.0 0.66 1.4E-05 45.3 6.0 33 269-302 46-78 (383)
326 TIGR02180 GRX_euk Glutaredoxin 89.9 0.31 6.8E-06 35.9 2.9 35 275-313 2-36 (84)
327 cd02976 NrdH NrdH-redoxin (Nrd 89.8 0.91 2E-05 32.0 5.3 55 85-153 3-58 (73)
328 PF07976 Phe_hydrox_dim: Pheno 89.8 2.7 5.8E-05 36.0 8.9 114 47-162 26-164 (169)
329 COG3054 Predicted transcriptio 89.7 1.3 2.7E-05 36.7 6.3 40 335-379 126-165 (184)
330 PF00462 Glutaredoxin: Glutare 89.7 1.1 2.3E-05 30.8 5.3 38 275-320 2-39 (60)
331 COG3054 Predicted transcriptio 89.5 0.8 1.7E-05 37.8 5.0 136 50-198 22-169 (184)
332 KOG3425|consensus 89.3 0.91 2E-05 36.1 5.0 48 266-314 20-75 (128)
333 cd03023 DsbA_Com1_like DsbA fa 89.0 0.62 1.3E-05 38.5 4.4 32 269-301 4-35 (154)
334 PF06053 DUF929: Domain of unk 89.0 2.1 4.6E-05 38.9 7.9 33 269-302 57-89 (249)
335 cd03020 DsbA_DsbC_DsbG DsbA fa 88.8 2.2 4.8E-05 37.3 8.0 26 269-295 76-101 (197)
336 TIGR02180 GRX_euk Glutaredoxin 88.6 0.54 1.2E-05 34.6 3.3 37 84-124 1-37 (84)
337 cd02976 NrdH NrdH-redoxin (Nrd 88.4 1.4 3.1E-05 31.0 5.4 31 276-314 4-34 (73)
338 PF13462 Thioredoxin_4: Thiore 88.2 1.2 2.6E-05 37.3 5.7 49 73-122 5-54 (162)
339 TIGR03765 ICE_PFL_4695 integra 88.2 3.6 7.8E-05 32.0 7.6 69 287-371 34-102 (105)
340 PRK11657 dsbG disulfide isomer 87.8 0.89 1.9E-05 41.7 4.9 29 79-108 116-144 (251)
341 KOG1731|consensus 87.7 0.36 7.8E-06 48.4 2.4 39 272-311 59-99 (606)
342 cd03023 DsbA_Com1_like DsbA fa 87.6 0.79 1.7E-05 37.8 4.2 31 80-111 5-35 (154)
343 PF02990 EMP70: Endomembrane p 87.5 0.24 5.2E-06 50.5 1.0 71 171-241 295-365 (521)
344 PRK11200 grxA glutaredoxin 1; 87.4 1.1 2.3E-05 33.4 4.4 38 84-124 3-40 (85)
345 PRK11200 grxA glutaredoxin 1; 87.4 1.4 3.1E-05 32.7 5.1 38 274-314 3-40 (85)
346 PRK11509 hydrogenase-1 operon 86.6 3.6 7.8E-05 33.7 7.2 35 342-384 79-113 (132)
347 PF13462 Thioredoxin_4: Thiore 86.4 1.8 4E-05 36.1 5.8 49 263-312 5-54 (162)
348 PF11072 DUF2859: Protein of u 86.2 5 0.00011 33.2 7.9 70 287-372 72-141 (142)
349 cd02066 GRX_family Glutaredoxi 85.2 1.9 4.2E-05 30.1 4.6 56 85-153 3-58 (72)
350 cd02066 GRX_family Glutaredoxi 83.3 2.7 5.9E-05 29.3 4.7 39 276-322 4-42 (72)
351 TIGR02190 GlrX-dom Glutaredoxi 82.7 2.4 5.2E-05 31.1 4.3 56 83-152 9-64 (79)
352 KOG0912|consensus 81.8 1.3 2.9E-05 41.0 3.0 32 81-113 14-45 (375)
353 PF00462 Glutaredoxin: Glutare 81.7 2.2 4.9E-05 29.2 3.6 53 85-151 2-55 (60)
354 PF11009 DUF2847: Protein of u 81.5 10 0.00022 29.7 7.5 77 270-378 19-95 (105)
355 cd02979 PHOX_C FAD-dependent P 80.5 23 0.0005 30.2 10.1 121 54-189 1-149 (167)
356 TIGR02189 GlrX-like_plant Glut 80.4 2.5 5.5E-05 32.6 3.8 33 84-124 10-42 (99)
357 PHA03050 glutaredoxin; Provisi 79.9 2.7 5.8E-05 33.1 3.9 22 84-106 15-36 (108)
358 cd03419 GRX_GRXh_1_2_like Glut 79.3 2.7 5.9E-05 30.6 3.6 33 87-124 4-36 (82)
359 cd03419 GRX_GRXh_1_2_like Glut 78.5 4.2 9.1E-05 29.5 4.4 32 278-314 5-36 (82)
360 TIGR02194 GlrX_NrdH Glutaredox 78.3 5.7 0.00012 28.3 5.0 37 277-320 3-39 (72)
361 TIGR02190 GlrX-dom Glutaredoxi 77.9 5.9 0.00013 28.9 5.0 34 274-315 10-43 (79)
362 TIGR02194 GlrX_NrdH Glutaredox 77.6 3.6 7.8E-05 29.4 3.7 53 87-152 3-55 (72)
363 cd02991 UAS_ETEA UAS family, E 77.2 3 6.5E-05 33.3 3.4 45 77-126 14-64 (116)
364 PRK10329 glutaredoxin-like pro 76.3 7.6 0.00016 28.7 5.2 53 87-153 5-58 (81)
365 TIGR02183 GRXA Glutaredoxin, G 75.3 6.8 0.00015 29.2 4.8 35 277-313 4-38 (86)
366 cd03019 DsbA_DsbA DsbA family, 75.2 5.2 0.00011 34.0 4.7 38 269-308 14-51 (178)
367 COG0695 GrxC Glutaredoxin and 75.2 7.3 0.00016 28.7 4.9 54 88-153 6-61 (80)
368 PRK10877 protein disulfide iso 74.8 4.9 0.00011 36.3 4.6 37 79-120 106-142 (232)
369 cd03418 GRX_GRXb_1_3_like Glut 74.4 7 0.00015 27.8 4.6 54 87-152 4-58 (75)
370 KOG1731|consensus 74.2 1.1 2.3E-05 45.1 0.2 42 82-124 59-102 (606)
371 PRK10329 glutaredoxin-like pro 74.2 11 0.00023 27.9 5.6 32 278-316 6-37 (81)
372 cd03019 DsbA_DsbA DsbA family, 73.8 6.2 0.00014 33.4 4.9 37 79-117 14-50 (178)
373 COG0695 GrxC Glutaredoxin and 73.7 9.3 0.0002 28.1 5.1 53 279-343 7-61 (80)
374 cd03020 DsbA_DsbC_DsbG DsbA fa 73.5 7.4 0.00016 34.0 5.4 32 73-105 70-101 (197)
375 KOG0911|consensus 73.2 3.6 7.8E-05 36.5 3.2 43 269-314 16-58 (227)
376 TIGR03143 AhpF_homolog putativ 73.2 14 0.00031 38.0 8.1 29 271-299 476-504 (555)
377 cd02972 DsbA_family DsbA famil 72.5 8.2 0.00018 28.4 4.8 34 276-311 3-36 (98)
378 cd03029 GRX_hybridPRX5 Glutare 72.1 8.9 0.00019 27.2 4.6 31 87-124 5-35 (72)
379 TIGR02183 GRXA Glutaredoxin, G 72.1 6.4 0.00014 29.4 4.0 36 86-123 3-38 (86)
380 TIGR00365 monothiol glutaredox 72.1 12 0.00025 28.7 5.5 61 80-152 11-74 (97)
381 cd03418 GRX_GRXb_1_3_like Glut 71.9 12 0.00026 26.6 5.3 39 276-322 4-43 (75)
382 PF03190 Thioredox_DsbH: Prote 71.4 4.9 0.00011 34.1 3.5 29 71-100 28-56 (163)
383 KOG4277|consensus 71.2 4.7 0.0001 37.3 3.5 33 272-305 45-77 (468)
384 TIGR03765 ICE_PFL_4695 integra 70.8 23 0.0005 27.5 6.7 58 97-162 34-91 (105)
385 PHA03050 glutaredoxin; Provisi 70.8 7.3 0.00016 30.6 4.2 21 275-296 16-36 (108)
386 cd03027 GRX_DEP Glutaredoxin ( 70.2 12 0.00025 26.7 4.9 52 88-152 6-58 (73)
387 TIGR00365 monothiol glutaredox 69.4 15 0.00033 28.1 5.6 47 270-323 11-60 (97)
388 PRK10638 glutaredoxin 3; Provi 69.1 12 0.00026 27.5 4.9 52 87-151 6-58 (83)
389 cd02979 PHOX_C FAD-dependent P 69.0 58 0.0013 27.7 9.7 123 244-379 1-154 (167)
390 cd03028 GRX_PICOT_like Glutare 67.5 13 0.00028 27.9 4.9 26 79-105 6-35 (90)
391 TIGR02181 GRX_bact Glutaredoxi 67.4 11 0.00024 27.2 4.3 53 87-152 3-56 (79)
392 TIGR02181 GRX_bact Glutaredoxi 67.2 13 0.00029 26.8 4.7 30 276-313 3-32 (79)
393 cd03029 GRX_hybridPRX5 Glutare 67.0 15 0.00032 26.0 4.9 29 279-314 7-35 (72)
394 PF11072 DUF2859: Protein of u 66.6 30 0.00065 28.6 7.0 59 97-163 72-130 (142)
395 PRK08294 phenol 2-monooxygenas 66.5 34 0.00073 36.0 9.2 129 49-189 461-612 (634)
396 TIGR02189 GlrX-like_plant Glut 65.7 11 0.00025 28.9 4.3 32 275-314 11-42 (99)
397 cd03028 GRX_PICOT_like Glutare 63.2 19 0.00042 27.0 5.1 45 269-321 6-54 (90)
398 PF13192 Thioredoxin_3: Thiore 61.6 32 0.00068 24.8 5.8 21 90-110 7-27 (76)
399 PRK10638 glutaredoxin 3; Provi 61.4 23 0.00049 26.0 5.1 32 277-315 6-37 (83)
400 KOG0914|consensus 60.6 15 0.00032 32.7 4.3 41 271-312 145-185 (265)
401 COG1651 DsbG Protein-disulfide 60.5 17 0.00037 32.8 5.1 45 69-114 73-117 (244)
402 PRK10954 periplasmic protein d 60.0 8.8 0.00019 33.9 3.1 38 269-308 36-76 (207)
403 cd03027 GRX_DEP Glutaredoxin ( 59.3 35 0.00075 24.2 5.7 28 280-314 8-35 (73)
404 PF01106 NifU: NifU-like domai 59.2 38 0.00082 24.1 5.7 33 69-103 15-47 (68)
405 COG2179 Predicted hydrolase of 58.6 26 0.00056 29.8 5.3 53 99-160 47-99 (175)
406 PRK10954 periplasmic protein d 58.4 11 0.00025 33.2 3.5 39 79-119 36-77 (207)
407 PF06053 DUF929: Domain of unk 58.0 15 0.00033 33.4 4.3 32 79-111 57-88 (249)
408 PF07976 Phe_hydrox_dim: Pheno 57.0 89 0.0019 26.6 8.7 108 240-352 29-164 (169)
409 KOG2961|consensus 56.9 31 0.00067 28.9 5.4 83 247-343 22-117 (190)
410 cd03032 ArsC_Spx Arsenate Redu 56.3 16 0.00034 29.0 3.6 64 85-162 2-69 (115)
411 PRK06183 mhpA 3-(3-hydroxyphen 56.3 43 0.00092 34.3 7.8 103 50-189 410-513 (538)
412 KOG0914|consensus 54.8 20 0.00043 31.9 4.2 35 81-116 145-179 (265)
413 cd03036 ArsC_like Arsenate Red 54.4 10 0.00022 29.8 2.3 41 87-134 3-47 (111)
414 PHA03075 glutaredoxin-like pro 53.8 9.3 0.0002 30.2 1.8 39 271-310 2-40 (123)
415 COG1651 DsbG Protein-disulfide 53.7 24 0.00052 31.8 4.9 45 259-304 73-117 (244)
416 PLN03098 LPA1 LOW PSII ACCUMUL 53.6 73 0.0016 31.7 8.4 53 259-313 285-337 (453)
417 KOG0911|consensus 53.3 6 0.00013 35.1 0.8 39 79-120 16-54 (227)
418 PRK01655 spxA transcriptional 52.7 15 0.00032 29.9 3.0 64 85-162 2-69 (131)
419 PF06462 Hyd_WA: Propeller; I 52.6 15 0.00032 21.9 2.2 29 178-207 2-30 (32)
420 cd02977 ArsC_family Arsenate R 52.3 16 0.00035 28.2 3.1 41 86-133 2-46 (105)
421 PLN03098 LPA1 LOW PSII ACCUMUL 52.1 35 0.00077 33.9 5.9 52 69-123 285-337 (453)
422 PRK08132 FAD-dependent oxidore 51.1 34 0.00073 35.1 6.0 101 50-190 426-527 (547)
423 PRK01655 spxA transcriptional 50.6 20 0.00043 29.2 3.5 64 275-352 2-69 (131)
424 PRK10824 glutaredoxin-4; Provi 50.2 29 0.00064 27.6 4.3 26 80-106 14-43 (115)
425 TIGR01617 arsC_related transcr 50.0 23 0.00049 28.1 3.7 62 87-162 3-68 (117)
426 COG2179 Predicted hydrolase of 49.9 33 0.00071 29.3 4.6 39 287-325 45-83 (175)
427 PHA03075 glutaredoxin-like pro 48.7 13 0.00028 29.4 1.9 30 81-111 2-31 (123)
428 cd02972 DsbA_family DsbA famil 48.3 25 0.00053 25.7 3.5 35 85-121 2-36 (98)
429 cd03032 ArsC_Spx Arsenate Redu 48.3 29 0.00063 27.4 4.0 63 276-352 3-69 (115)
430 TIGR01617 arsC_related transcr 48.2 25 0.00055 27.8 3.7 61 277-351 3-67 (117)
431 PRK06184 hypothetical protein; 48.1 47 0.001 33.6 6.5 91 50-190 385-477 (502)
432 PRK10824 glutaredoxin-4; Provi 47.1 38 0.00082 27.0 4.4 38 281-325 28-65 (115)
433 PF01106 NifU: NifU-like domai 47.1 80 0.0017 22.4 5.7 41 259-301 15-56 (68)
434 KOG3414|consensus 46.8 74 0.0016 25.8 5.9 45 269-315 22-66 (142)
435 PRK12559 transcriptional regul 46.4 27 0.00058 28.5 3.6 64 85-162 2-69 (131)
436 KOG4277|consensus 45.4 8.5 0.00019 35.7 0.6 33 82-115 45-77 (468)
437 cd03036 ArsC_like Arsenate Red 45.4 24 0.00053 27.7 3.1 42 277-325 3-48 (111)
438 PF08821 CGGC: CGGC domain; I 45.4 56 0.0012 25.6 5.1 47 261-312 26-73 (107)
439 PF02114 Phosducin: Phosducin; 45.2 45 0.00098 30.8 5.3 41 270-313 146-186 (265)
440 cd03060 GST_N_Omega_like GST_N 44.4 46 0.00099 23.3 4.2 53 88-153 4-56 (71)
441 TIGR02742 TrbC_Ftype type-F co 43.8 96 0.0021 25.3 6.4 68 291-370 12-81 (130)
442 PRK13738 conjugal transfer pil 43.6 1.3E+02 0.0029 26.7 7.7 71 287-380 131-203 (209)
443 cd02977 ArsC_family Arsenate R 43.0 31 0.00068 26.6 3.4 42 277-325 3-48 (105)
444 PRK13344 spxA transcriptional 42.8 41 0.00088 27.4 4.1 63 276-352 3-69 (132)
445 PF02966 DIM1: Mitosis protein 42.1 72 0.0016 26.0 5.3 46 269-316 19-64 (133)
446 PF08821 CGGC: CGGC domain; I 41.8 67 0.0014 25.2 5.0 47 71-122 26-73 (107)
447 COG1331 Highly conserved prote 40.0 35 0.00077 35.5 4.0 73 266-345 39-120 (667)
448 PF09673 TrbC_Ftype: Type-F co 39.5 1.1E+02 0.0025 24.0 6.1 67 292-369 12-80 (113)
449 TIGR00995 3a0901s06TIC22 chlor 37.2 2.5E+02 0.0054 26.0 8.6 77 245-343 80-161 (270)
450 PRK12559 transcriptional regul 36.6 59 0.0013 26.4 4.2 63 276-352 3-69 (131)
451 PRK08132 FAD-dependent oxidore 36.5 1.4E+02 0.003 30.6 7.9 102 243-379 429-531 (547)
452 PRK13344 spxA transcriptional 36.1 43 0.00094 27.3 3.3 64 85-162 2-69 (132)
453 PF05768 DUF836: Glutaredoxin- 35.7 39 0.00084 24.7 2.7 56 85-153 2-57 (81)
454 PRK11509 hydrogenase-1 operon 35.7 1.1E+02 0.0023 25.0 5.5 33 152-196 79-111 (132)
455 COG1465 Predicted alternative 35.4 81 0.0018 29.4 5.1 29 247-278 330-359 (376)
456 PRK13738 conjugal transfer pil 35.4 3E+02 0.0065 24.4 8.7 52 97-163 131-182 (209)
457 PF05768 DUF836: Glutaredoxin- 35.0 63 0.0014 23.6 3.8 54 277-343 4-57 (81)
458 TIGR03143 AhpF_homolog putativ 34.7 88 0.0019 32.2 6.1 29 81-109 476-504 (555)
459 KOG1752|consensus 33.8 71 0.0015 24.9 4.0 35 81-124 14-48 (104)
460 cd03035 ArsC_Yffb Arsenate Red 32.4 41 0.00089 26.2 2.5 42 86-134 2-47 (105)
461 PF04278 Tic22: Tic22-like fam 32.2 1.1E+02 0.0025 28.3 5.8 84 245-343 73-161 (274)
462 PRK12759 bifunctional gluaredo 32.0 78 0.0017 31.3 5.0 36 279-321 8-43 (410)
463 TIGR02743 TraW type-F conjugat 31.0 3.3E+02 0.0071 24.1 8.1 86 58-163 90-184 (202)
464 TIGR03759 conj_TIGR03759 integ 30.6 1.2E+02 0.0026 26.6 5.2 47 273-325 111-158 (200)
465 PF02114 Phosducin: Phosducin; 30.2 1.5E+02 0.0032 27.4 6.2 41 80-123 146-186 (265)
466 TIGR02743 TraW type-F conjugat 28.6 2.2E+02 0.0048 25.1 6.7 68 287-377 133-200 (202)
467 PRK12759 bifunctional gluaredo 28.4 81 0.0018 31.2 4.4 33 84-124 4-36 (410)
468 PRK06183 mhpA 3-(3-hydroxyphen 28.4 3.4E+02 0.0073 27.7 9.1 104 242-377 412-516 (538)
469 KOG0913|consensus 28.0 16 0.00034 32.9 -0.6 44 79-124 39-84 (248)
470 COG0552 FtsY Signal recognitio 27.5 2.5E+02 0.0054 26.9 7.1 51 270-324 137-192 (340)
471 PRK12359 flavodoxin FldB; Prov 26.8 1.8E+02 0.0039 24.9 5.7 17 102-118 100-116 (172)
472 KOG2961|consensus 25.9 2E+02 0.0044 24.2 5.5 70 72-152 34-116 (190)
473 KOG2116|consensus 25.8 1.8E+02 0.0039 30.4 6.2 54 292-346 562-618 (738)
474 COG0694 Thioredoxin-like prote 25.6 2.5E+02 0.0053 21.5 5.6 35 69-105 29-65 (93)
475 cd07255 Glo_EDI_BRP_like_12 Th 25.4 1.4E+02 0.003 23.0 4.6 59 303-381 63-121 (125)
476 PRK06184 hypothetical protein; 25.4 2.9E+02 0.0062 27.9 7.9 92 242-378 387-480 (502)
477 PF09897 DUF2124: Uncharacteri 25.3 80 0.0017 26.3 3.1 59 83-153 83-141 (147)
478 PRK15317 alkyl hydroperoxide r 25.0 2E+02 0.0044 29.2 6.8 42 266-310 112-153 (517)
479 TIGR00995 3a0901s06TIC22 chlor 24.9 5.6E+02 0.012 23.8 8.7 89 53-163 78-170 (270)
480 cd00570 GST_N_family Glutathio 24.6 1.6E+02 0.0034 19.4 4.3 54 88-153 4-57 (71)
481 KOG3414|consensus 23.8 2.6E+02 0.0057 22.7 5.5 41 80-123 23-64 (142)
482 PF04278 Tic22: Tic22-like fam 23.7 1.8E+02 0.0038 27.1 5.4 92 55-162 73-169 (274)
483 PRK10026 arsenate reductase; P 23.6 2.4E+02 0.0053 23.3 5.7 44 275-325 4-51 (141)
484 PF07449 HyaE: Hydrogenase-1 e 23.4 3.5E+02 0.0075 21.2 6.2 35 342-384 70-104 (107)
485 cd07254 Glo_EDI_BRP_like_20 Th 23.1 1.2E+02 0.0025 23.4 3.7 59 304-378 58-116 (120)
486 PTZ00106 60S ribosomal protein 23.0 3.7E+02 0.0081 21.0 6.9 54 296-352 33-86 (108)
487 cd09013 BphC-JF8_N_like N-term 22.9 2.2E+02 0.0047 21.9 5.3 57 304-379 62-118 (121)
488 cd03059 GST_N_SspA GST_N famil 22.9 1.2E+02 0.0027 20.9 3.5 18 88-105 4-21 (73)
489 PF01323 DSBA: DSBA-like thior 22.3 1.2E+02 0.0026 25.7 3.9 40 276-315 3-42 (193)
490 COG0525 ValS Valyl-tRNA synthe 21.6 92 0.002 33.8 3.4 41 333-375 249-302 (877)
491 KOG0913|consensus 21.4 22 0.00048 31.9 -0.9 37 269-307 39-75 (248)
492 PRK15317 alkyl hydroperoxide r 21.3 1.5E+02 0.0032 30.2 4.9 37 81-120 116-153 (517)
493 cd03040 GST_N_mPGES2 GST_N fam 20.6 3.1E+02 0.0067 19.1 5.3 31 87-124 4-34 (77)
494 cd03041 GST_N_2GST_N GST_N fam 20.6 3.2E+02 0.0069 19.3 5.5 20 86-105 3-22 (77)
495 PRK08294 phenol 2-monooxygenas 20.4 6.2E+02 0.014 26.6 9.4 126 242-380 464-618 (634)
496 cd03037 GST_N_GRX2 GST_N famil 20.4 3E+02 0.0064 18.9 5.1 16 90-105 6-21 (71)
No 1
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.3e-30 Score=216.30 Aligned_cols=134 Identities=29% Similarity=0.390 Sum_probs=120.2
Q ss_pred ccccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhH
Q psy17178 49 YSKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH 128 (384)
Q Consensus 49 ~~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~ 128 (384)
+++++|++||||+|++. +|++++|+|++||+|||+|||.+++|.|..|+..|++.+++|++.|++|+|||+|+++++
T Consensus 2 ~~l~~G~~aPdF~Lp~~---~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~ 78 (157)
T COG1225 2 MMLKVGDKAPDFELPDQ---DGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSH 78 (157)
T ss_pred CcCCCCCcCCCeEeecC---CCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHH
Confidence 46789999999999876 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCC-cccceeEEEEEEEecCCCccccc
Q psy17178 129 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGP-VRGSLLSTAIFVYALTSPVNGYA 192 (384)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~-~~g~~~~~~~~vid~~G~v~~~~ 192 (384)
++|++. + +++||+|+|.+++++++|||+..+... .....+.|++||||++|+|+...
T Consensus 79 ~~F~~k---~----~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~ 136 (157)
T COG1225 79 KKFAEK---H----GLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW 136 (157)
T ss_pred HHHHHH---h----CCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEe
Confidence 999995 3 899999999999999999998766422 12234568999999999998554
No 2
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.9e-28 Score=204.88 Aligned_cols=150 Identities=42% Similarity=0.711 Sum_probs=134.3
Q ss_pred cccCCCCCCccEEEeeecCcc--ceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHh
Q psy17178 50 SKNLSKPAPFWQGTAVVDGQL--KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT 127 (384)
Q Consensus 50 ~~~~G~~aP~f~l~~~~~~~g--~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~ 127 (384)
++.+|+++|+|+.++.. +++ .+++|+++.|||+||+|||++++|+|++|+..+++.|++|++.|++||+||+|+.++
T Consensus 2 ~~lIg~~aP~F~~~a~~-~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fs 80 (194)
T COG0450 2 MSLIGKKAPDFTANAVL-GGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFS 80 (194)
T ss_pred ccccCCcCCCcEEEEEe-cCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHH
Confidence 45799999999998874 222 499999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeeeeccCCcccee
Q psy17178 128 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAWIR 207 (384)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~p~~~g~~wk~ 207 (384)
+.+|.+..+++.+.++++||+++|.+++++++||+..+++| .+-|++|||||+|+||. ..+|+...||+...
T Consensus 81 H~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g-----~a~R~~FIIDp~g~ir~---~~v~~~~iGRn~dE 152 (194)
T COG0450 81 HKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEG-----LALRGTFIIDPDGVIRH---ILVNPLTIGRNVDE 152 (194)
T ss_pred HHHHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCCC-----cceeEEEEECCCCeEEE---EEEecCCCCcCHHH
Confidence 99999998888888789999999999999999999887755 36789999999999964 57788888998654
Q ss_pred e
Q psy17178 208 H 208 (384)
Q Consensus 208 ~ 208 (384)
.
T Consensus 153 i 153 (194)
T COG0450 153 I 153 (194)
T ss_pred H
Confidence 4
No 3
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.95 E-value=8.9e-28 Score=209.25 Aligned_cols=143 Identities=31% Similarity=0.552 Sum_probs=123.5
Q ss_pred ccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHh
Q psy17178 51 KNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA 130 (384)
Q Consensus 51 ~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~ 130 (384)
+.+|+++|+|+.+.+.+++..+++|++++||++||+|||++|||+|+.|++.|++++++|++.|+++++||.|+++.+++
T Consensus 2 ~~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a 81 (187)
T PRK10382 2 SLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKA 81 (187)
T ss_pred CccCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHH
Confidence 46999999999999877888899999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeeeeccCCcc
Q psy17178 131 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRA 204 (384)
Q Consensus 131 ~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~p~~~g~~ 204 (384)
|.+..++ ..+++||+++|++++++++||++.+..| ...|++||||++|+|+.... ++...+++
T Consensus 82 ~~~~~~~---~~~l~fpllsD~~~~ia~~ygv~~~~~g-----~~~r~tfIID~~G~I~~~~~---~~~~~~~~ 144 (187)
T PRK10382 82 WHSSSET---IAKIKYAMIGDPTGALTRNFDNMREDEG-----LADRATFVVDPQGIIQAIEV---TAEGIGRD 144 (187)
T ss_pred HHHhhcc---ccCCceeEEEcCchHHHHHcCCCcccCC-----ceeeEEEEECCCCEEEEEEE---eCCCCCCC
Confidence 9975322 1368999999999999999999765433 35699999999999986533 34445554
No 4
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.5e-27 Score=198.10 Aligned_cols=131 Identities=32% Similarity=0.435 Sum_probs=121.7
Q ss_pred CCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHH
Q psy17178 241 PFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA 320 (384)
Q Consensus 241 ~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~ 320 (384)
+.+|+.+|+|+|+ |++|+.++|+|++||+|||+|||..++|.|..|+..++..+++|++.|.+|++||+|+++++++
T Consensus 4 l~~G~~aPdF~Lp---~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~ 80 (157)
T COG1225 4 LKVGDKAPDFELP---DQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKK 80 (157)
T ss_pred CCCCCcCCCeEee---cCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHH
Confidence 4689999999998 7799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCccccCCCCCcceeEEecCchHHHHHhCceecCC--C----ceeeEEEEEeCCceEEEEEecCC
Q psy17178 321 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ--G----HTLDKYCLECYKMVIVYWFERGN 381 (384)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~--~----~~~p~~~lId~~G~i~~~~~~~~ 381 (384)
|++++ +++|++++|++++++++||++..+. | ...|+|||||++|+|+++|+...
T Consensus 81 F~~k~-------~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~ 140 (157)
T COG1225 81 FAEKH-------GLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVK 140 (157)
T ss_pred HHHHh-------CCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEecCCC
Confidence 99987 9999999999999999999987543 1 36799999999999999996543
No 5
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.94 E-value=2.9e-26 Score=208.14 Aligned_cols=150 Identities=37% Similarity=0.672 Sum_probs=124.3
Q ss_pred cccccccCCCCCCccEEEeeecCccceEEcccc-CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178 46 TTFYSKNLSKPAPFWQGTAVVDGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124 (384)
Q Consensus 46 ~~~~~~~~G~~aP~f~l~~~~~~~g~~~~l~~~-~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~ 124 (384)
....++.+|+++|+|+++++.++++++++|+++ +||++||+|||++|||+|+.|++.|++++++|+++|++|++||.|+
T Consensus 63 ~~~~~~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds 142 (261)
T PTZ00137 63 NTVTSSLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDS 142 (261)
T ss_pred cccccccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 334566899999999998744556678999998 8999999999999999999999999999999999999999999999
Q ss_pred HHhHHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeeeeccCCcc
Q psy17178 125 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRA 204 (384)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~p~~~g~~ 204 (384)
++.+++|.+...+..+..+++||+++|++++++++||++.. .| ...|++||||++|+|+... +++...+++
T Consensus 143 ~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~-~g-----~a~R~tFIID~dG~I~~~~---~~~~~~gr~ 213 (261)
T PTZ00137 143 PFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRD-EG-----FSHRASVLVDKAGVVKHVA---VYDLGLGRS 213 (261)
T ss_pred HHHHHHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCc-CC-----ceecEEEEECCCCEEEEEE---EeCCCCCCC
Confidence 99999998743232223378999999999999999999653 22 4578999999999997543 355666665
No 6
>PRK15000 peroxidase; Provisional
Probab=99.94 E-value=2.6e-26 Score=202.83 Aligned_cols=145 Identities=36% Similarity=0.630 Sum_probs=119.7
Q ss_pred cCCCCCCccEEEeeecCccc---eEEcccc-CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHh
Q psy17178 52 NLSKPAPFWQGTAVVDGQLK---EIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT 127 (384)
Q Consensus 52 ~~G~~aP~f~l~~~~~~~g~---~~~l~~~-~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~ 127 (384)
.+|+++|+|++++. .++|+ .++|+++ +||++||+|||++|||+|++|+++|++++++|+++|++|++||.|+.+.
T Consensus 3 ~vg~~aPdF~~~~~-~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~ 81 (200)
T PRK15000 3 LVTRQAPDFTAAAV-LGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFV 81 (200)
T ss_pred cCCCcCCCCEeecc-cCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHH
Confidence 48999999999875 22344 4567777 8999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeeeeccCCccc
Q psy17178 128 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAW 205 (384)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~p~~~g~~w 205 (384)
+++|.+.+.+..+.++++||+++|+++++++.||+...+.| ...|++||||++|+|+.... ++...+|+.
T Consensus 82 ~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g-----~~~r~tfiID~~G~I~~~~~---~~~~~gr~~ 151 (200)
T PRK15000 82 HNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEG-----VALRGSFLIDANGIVRHQVV---NDLPLGRNI 151 (200)
T ss_pred HHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCCCC-----cEEeEEEEECCCCEEEEEEe---cCCCCCCCH
Confidence 99998764444333357999999999999999999765533 45799999999999986543 455666663
No 7
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.94 E-value=2.3e-26 Score=201.63 Aligned_cols=134 Identities=34% Similarity=0.633 Sum_probs=113.9
Q ss_pred cCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhh
Q psy17178 52 NLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW 131 (384)
Q Consensus 52 ~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~ 131 (384)
.+|+++|+|+++++.++....+++++++||++||+|||++|||+|+.|++.|++++++|++.|++|++||.|+.+.+++|
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~ 82 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAW 82 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHH
Confidence 58999999999874233334789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccc
Q psy17178 132 VNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAG 193 (384)
Q Consensus 132 ~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~ 193 (384)
.+..... .+++||+++|++++++++||++....| ...|++||||++|+|+....
T Consensus 83 ~~~~~~~---~~l~fpllsD~~~~~a~~~gv~~~~~g-----~~~p~tfiID~~G~I~~~~~ 136 (187)
T TIGR03137 83 HDTSEAI---GKITYPMLGDPTGVLTRNFGVLIEEAG-----LADRGTFVIDPEGVIQAVEI 136 (187)
T ss_pred Hhhhhhc---cCcceeEEECCccHHHHHhCCcccCCC-----ceeeEEEEECCCCEEEEEEE
Confidence 8753111 268899999999999999999765422 34689999999999986554
No 8
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.94 E-value=1.4e-25 Score=195.55 Aligned_cols=135 Identities=29% Similarity=0.503 Sum_probs=122.0
Q ss_pred CCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHH
Q psy17178 242 FVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW 321 (384)
Q Consensus 242 ~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~ 321 (384)
.+|.++|+|+.+.+.+.+...++|++++||++||+||+++|||+|..|++.|++++++|++.|++|++||.|+++.+++|
T Consensus 3 ~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~ 82 (187)
T PRK10382 3 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAW 82 (187)
T ss_pred ccCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHH
Confidence 58999999999998777888899999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178 322 VNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER 379 (384)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~ 379 (384)
.+..+.. .+++||+++|+++.++++||+.....+...|++||||++|+|++.+..
T Consensus 83 ~~~~~~~---~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~ 137 (187)
T PRK10382 83 HSSSETI---AKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVT 137 (187)
T ss_pred HHhhccc---cCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEe
Confidence 9764321 268999999999999999999765555667999999999999998864
No 9
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.94 E-value=3.9e-26 Score=202.39 Aligned_cols=142 Identities=30% Similarity=0.568 Sum_probs=120.0
Q ss_pred ccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHh
Q psy17178 51 KNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA 130 (384)
Q Consensus 51 ~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~ 130 (384)
+.+|+.+|+|++++. +| .++|++++||++||+|||++|||+|+.|++.|++++++|+++|+++++||.|+.+.+.+
T Consensus 2 ~~vG~~aP~F~~~~~---~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~ 77 (202)
T PRK13190 2 VKLGQKAPDFTVNTT---KG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIA 77 (202)
T ss_pred CCCCCCCCCcEEecC---CC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHH
Confidence 569999999999875 55 79999999999999888899999999999999999999999999999999999999999
Q ss_pred hccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeeeeccCCccc
Q psy17178 131 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAW 205 (384)
Q Consensus 131 ~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~p~~~g~~w 205 (384)
|.+.+.+..+. .++||+++|++++++++||+.....| ...|++||||++|+|+... .++...|++.
T Consensus 78 w~~~~~~~~g~-~~~fPll~D~~~~ia~~ygv~~~~~g-----~~~p~~fiId~~G~I~~~~---~~~~~~gr~~ 143 (202)
T PRK13190 78 WLRDIEERFGI-KIPFPVIADIDKELAREYNLIDENSG-----ATVRGVFIIDPNQIVRWMI---YYPAETGRNI 143 (202)
T ss_pred HHHhHHHhcCC-CceEEEEECCChHHHHHcCCccccCC-----cEEeEEEEECCCCEEEEEE---EeCCCCCCCH
Confidence 98765443221 36899999999999999999765433 3568999999999998543 4666677763
No 10
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.93 E-value=5.6e-26 Score=202.48 Aligned_cols=143 Identities=28% Similarity=0.452 Sum_probs=121.6
Q ss_pred cCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhh
Q psy17178 52 NLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW 131 (384)
Q Consensus 52 ~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~ 131 (384)
.+|+++|+|++++. +|+...+++++||++||+|+|++|||+|..|++.|++++++|+++|+++++||.|+.+.+++|
T Consensus 3 ~~Gd~aPdF~l~t~---~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w 79 (215)
T PRK13599 3 LLGEKFPSMEVVTT---QGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKW 79 (215)
T ss_pred CCCCCCCCCEeECC---CCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHH
Confidence 68999999999876 888888899999999888888999999999999999999999999999999999999999999
Q ss_pred ccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeeeeccCCccc
Q psy17178 132 VNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAW 205 (384)
Q Consensus 132 ~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~p~~~g~~w 205 (384)
.+.+++..+ .+++||+++|++++++++||+..... +....|++||||++|+|+.. ..||...+++.
T Consensus 80 ~~~i~~~~~-~~i~fPil~D~~~~va~~yg~~~~~~----~~~~~R~tfIID~dG~Ir~~---~~~p~~~gr~~ 145 (215)
T PRK13599 80 VEWIKDNTN-IAIPFPVIADDLGKVSNQLGMIHPGK----GTNTVRAVFIVDDKGTIRLI---MYYPQEVGRNV 145 (215)
T ss_pred HHhHHHhcC-CCCceeEEECCCchHHHHcCCCccCC----CCceeeEEEEECCCCEEEEE---EEcCCCCCCCH
Confidence 876543211 26899999999999999999975432 22356999999999999865 45677777763
No 11
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.93 E-value=2.7e-25 Score=194.94 Aligned_cols=133 Identities=33% Similarity=0.540 Sum_probs=116.6
Q ss_pred CCCCCCCCceeeeEEcCcce--eeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178 242 FVSKPAPFWQGTAVVDGQLK--EIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL 319 (384)
Q Consensus 242 ~~g~~~P~f~l~~l~d~~g~--~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~ 319 (384)
.+|+.+|+|+++++ .+|+ .+++++++||++||+||+++|||+|+.|++.|++++++|+++|++|++||.|+++.++
T Consensus 3 ~~G~~aP~f~l~~~--~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~ 80 (187)
T TIGR03137 3 LINTEIKPFKATAY--HNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHK 80 (187)
T ss_pred ccCCcCCCcEeeec--cCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHH
Confidence 57999999999853 2454 7899999999999999999999999999999999999999999999999999998888
Q ss_pred HHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178 320 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER 379 (384)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~ 379 (384)
+|.+..... .+++||+++|+++.+++.||++....+...|++||||++|+|++.+..
T Consensus 81 ~~~~~~~~~---~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~~ 137 (187)
T TIGR03137 81 AWHDTSEAI---GKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEIT 137 (187)
T ss_pred HHHhhhhhc---cCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEEEe
Confidence 888764222 168899999999999999999766555678999999999999998864
No 12
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.93 E-value=1.5e-25 Score=199.82 Aligned_cols=144 Identities=29% Similarity=0.469 Sum_probs=119.8
Q ss_pred cccCCCCCCccEEEeeecCccceEEc-cccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhH
Q psy17178 50 SKNLSKPAPFWQGTAVVDGQLKEIKL-SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH 128 (384)
Q Consensus 50 ~~~~G~~aP~f~l~~~~~~~g~~~~l-~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~ 128 (384)
++.+|+++|+|++++. +|+ +++ ++++||++||+|||++|||+|.+|++.|++++++|+++|++|++||+|+.+.+
T Consensus 6 ~~~iG~~aPdF~l~~~---~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h 81 (215)
T PRK13191 6 IPLIGEKFPEMEVITT---HGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISH 81 (215)
T ss_pred cccCCCcCCCCEeecC---CCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHH
Confidence 5679999999999876 776 556 55799999998999999999999999999999999999999999999999999
Q ss_pred HhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeeeeccCCccc
Q psy17178 129 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAW 205 (384)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~p~~~g~~w 205 (384)
++|.+..++..+. +++||+++|.+++++++||++.... +....|++||||++|+|+... +++...||+.
T Consensus 82 ~aw~~~~~~~~~~-~i~fPllsD~~~~ia~~ygv~~~~~----~~~~~r~tfIID~~G~Ir~~~---~~~~~~gr~~ 150 (215)
T PRK13191 82 IEWVMWIEKNLKV-EVPFPIIADPMGNVAKRLGMIHAES----STATVRAVFIVDDKGTVRLIL---YYPMEIGRNI 150 (215)
T ss_pred HHHHhhHHHhcCC-CCceEEEECCchHHHHHcCCccccc----CCceeEEEEEECCCCEEEEEE---ecCCCCCCCH
Confidence 9998765432222 6899999999999999999976431 124568999999999997543 4566777763
No 13
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.93 E-value=1.8e-25 Score=193.90 Aligned_cols=138 Identities=55% Similarity=0.945 Sum_probs=116.7
Q ss_pred CCCCCCccEEEeeec-CccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhh
Q psy17178 53 LSKPAPFWQGTAVVD-GQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW 131 (384)
Q Consensus 53 ~G~~aP~f~l~~~~~-~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~ 131 (384)
+|+++|+|++++..+ ++|+.++|++++||++||+||+++|||+|..+++.|++++++|++.|+++++||.|+.+..++|
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~ 80 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAW 80 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHH
Confidence 699999999998732 3348999999999999999999999999999999999999999999999999999998888888
Q ss_pred ccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccccccee
Q psy17178 132 VNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGA 195 (384)
Q Consensus 132 ~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~ 195 (384)
.+...+..+.++++||+++|.+++++++||++..+.| ...|++||||++|+|++...+.
T Consensus 81 ~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~-----~~~p~~~lID~~G~I~~~~~~~ 139 (173)
T cd03015 81 RNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEG-----VALRGTFIIDPEGIIRHITVND 139 (173)
T ss_pred HHhhhhhCCccCcceeEEECCchhHHHHhCCccccCC-----ceeeEEEEECCCCeEEEEEecC
Confidence 8765331112368999999999999999999766522 3457899999999999776554
No 14
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.93 E-value=1.7e-25 Score=198.26 Aligned_cols=147 Identities=41% Similarity=0.788 Sum_probs=121.1
Q ss_pred ccCCCCCCccEEEee-ecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178 51 KNLSKPAPFWQGTAV-VDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL 129 (384)
Q Consensus 51 ~~~G~~aP~f~l~~~-~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~ 129 (384)
+.+|+++|+|++.++ .+++|++++|++++||+++|+|||++|||+|+.++++|++++++|+++|++|++||.|+.+.+.
T Consensus 6 ~~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~ 85 (199)
T PTZ00253 6 AKINHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHL 85 (199)
T ss_pred cccCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHH
Confidence 469999999998764 2567889999999999999999999999999999999999999999999999999999998888
Q ss_pred hhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeeeeccCCccc
Q psy17178 130 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAW 205 (384)
Q Consensus 130 ~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~p~~~g~~w 205 (384)
+|....+...+.+.++||+++|.+++++++||++..+.| ...|++||||++|+|+....+ +...+++.
T Consensus 86 ~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~~g-----~~~r~~fiID~~G~i~~~~~~---~~~~~r~~ 153 (199)
T PTZ00253 86 QWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQG-----VAYRGLFIIDPKGMLRQITVN---DMPVGRNV 153 (199)
T ss_pred HHHhChHhhCCccccccceEECcHhHHHHHcCCcccCCC-----ceEEEEEEECCCCEEEEEEec---CCCCCCCH
Confidence 886532222123358999999999999999999766533 345899999999999864433 33456653
No 15
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.93 E-value=5.3e-25 Score=190.99 Aligned_cols=137 Identities=57% Similarity=0.922 Sum_probs=118.1
Q ss_pred CCCCCCCceeeeEEc-CcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHH
Q psy17178 243 VSKPAPFWQGTAVVD-GQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW 321 (384)
Q Consensus 243 ~g~~~P~f~l~~l~d-~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~ 321 (384)
+|+.+|+|+++++.+ ++|+.+++++++||++||+||+++|||.|+.+++.|++++++|+++|++|++||.|+.+..++|
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~ 80 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAW 80 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHH
Confidence 589999999996621 2338999999999999999999999999999999999999999999999999999998877888
Q ss_pred hcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178 322 VNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER 379 (384)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~ 379 (384)
.+...+..+..+++|+++.|+++++++.||++..+.+...|++||||++|+|++++..
T Consensus 81 ~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~ 138 (173)
T cd03015 81 RNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVN 138 (173)
T ss_pred HHhhhhhCCccCcceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEEec
Confidence 8775432212268999999999999999999766656678999999999999999853
No 16
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.93 E-value=1.6e-25 Score=188.09 Aligned_cols=127 Identities=30% Similarity=0.402 Sum_probs=112.1
Q ss_pred CCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhc
Q psy17178 53 LSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWV 132 (384)
Q Consensus 53 ~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~ 132 (384)
+|+++|+|++++. +|++++|++++||++||+||+++|||+|+.+++.|+++++++ .|+.+++||.|+.+.+++|.
T Consensus 2 ~G~~aP~f~l~~~---~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~--~~~~vi~Is~d~~~~~~~~~ 76 (143)
T cd03014 2 VGDKAPDFTLVTS---DLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKL--DNTVVLTISADLPFAQKRWC 76 (143)
T ss_pred CCCCCCCcEEECC---CCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhc--CCCEEEEEECCCHHHHHHHH
Confidence 7999999999877 899999999999999999998888999999999999999998 38999999999999999998
Q ss_pred cCccccCCCCc-cceeEEeeCc-chhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178 133 NTPRKEGGLGK-LKIPLLSDLT-HKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL 196 (384)
Q Consensus 133 ~~~~~~~~~~~-~~~p~l~D~~-~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~ 196 (384)
+.+ + .+||+++|.. ++++++||++.+..| ...|++||||++|+|+....|..
T Consensus 77 ~~~-------~~~~~~~l~D~~~~~~~~~~gv~~~~~~-----~~~~~~~iid~~G~I~~~~~~~~ 130 (143)
T cd03014 77 GAE-------GVDNVTTLSDFRDHSFGKAYGVLIKDLG-----LLARAVFVIDENGKVIYVELVPE 130 (143)
T ss_pred Hhc-------CCCCceEeecCcccHHHHHhCCeeccCC-----ccceEEEEEcCCCeEEEEEECCC
Confidence 854 4 3799999996 999999999765432 34688999999999998776654
No 17
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=7.7e-25 Score=185.48 Aligned_cols=138 Identities=44% Similarity=0.751 Sum_probs=128.8
Q ss_pred CCCCCCCCCceeeeEEcCcc---eeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHh
Q psy17178 241 PFVSKPAPFWQGTAVVDGQL---KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT 317 (384)
Q Consensus 241 ~~~g~~~P~f~l~~l~d~~g---~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~ 317 (384)
..+|+++|+|+.+++. .| .+++++++.||++|++||++..+++|+.|+..+++.|++|+++|++|++||+|+..+
T Consensus 3 ~lIg~~aP~F~~~a~~--~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fs 80 (194)
T COG0450 3 SLIGKKAPDFTANAVL--GGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFS 80 (194)
T ss_pred cccCCcCCCcEEEEEe--cCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHH
Confidence 4689999999999873 45 499999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEecC
Q psy17178 318 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFERG 380 (384)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~ 380 (384)
+.+|.+..++..++++++||+++|.+++++++||+..++.|.+.+++||||++|+|++.....
T Consensus 81 H~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~ 143 (194)
T COG0450 81 HKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHILVNP 143 (194)
T ss_pred HHHHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCCCcceeEEEEECCCCeEEEEEEec
Confidence 999999988888887899999999999999999999888888999999999999999987653
No 18
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.93 E-value=6.8e-25 Score=179.50 Aligned_cols=124 Identities=25% Similarity=0.353 Sum_probs=114.4
Q ss_pred CCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHh
Q psy17178 243 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWV 322 (384)
Q Consensus 243 ~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~ 322 (384)
+|+++|+|+++ |.+|+.+++++++||++||+||+++|||.|..+++.|++++++++++++++++|+.|+++.+++|.
T Consensus 1 vG~~~P~f~l~---~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~ 77 (124)
T PF00578_consen 1 VGDKAPDFTLT---DSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFL 77 (124)
T ss_dssp TTSBGGCEEEE---TTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHH
T ss_pred CcCCCCCcEeE---CCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhh
Confidence 68999999999 559999999999999999999966699999999999999999999999999999999999999999
Q ss_pred cCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEE
Q psy17178 323 NTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYW 376 (384)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~ 376 (384)
+.. +++||++.|+++.+.+.||+.........|++||||++|+|+|.
T Consensus 78 ~~~-------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 78 EEY-------GLPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp HHH-------TCSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEEE
T ss_pred hhh-------ccccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEeC
Confidence 987 79999999999999999999655433589999999999999984
No 19
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.93 E-value=3.7e-25 Score=190.59 Aligned_cols=131 Identities=29% Similarity=0.393 Sum_probs=111.4
Q ss_pred cccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178 50 SKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL 129 (384)
Q Consensus 50 ~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~ 129 (384)
.+.+|+++|+|++++. +|+.++|++++||++||+|||++|||+|..|+|.|+++++++ .|++|++||.|+++.++
T Consensus 17 ~~~~G~~~P~f~l~~~---~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~--~~~~vv~vs~D~~~~~~ 91 (167)
T PRK00522 17 LPQVGDKAPDFTLVAN---DLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAEL--DNTVVLCISADLPFAQK 91 (167)
T ss_pred CCCCCCCCCCeEEEcC---CCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHc--CCcEEEEEeCCCHHHHH
Confidence 4569999999999876 899999999999999999998888999999999999999998 38999999999999999
Q ss_pred hhccCccccCCCCccc-eeEEeeC-cchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccce
Q psy17178 130 AWVNTPRKEGGLGKLK-IPLLSDL-THKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGG 194 (384)
Q Consensus 130 ~~~~~~~~~~~~~~~~-~p~l~D~-~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g 194 (384)
+|.+.. +++ +++++|. .+.++++||+...+.. ..| ...|++||||++|+|+....+
T Consensus 92 ~f~~~~-------~~~~~~~lsD~~~~~~~~~~gv~~~~~~-~~g-~~~r~tfvId~~G~I~~~~~~ 149 (167)
T PRK00522 92 RFCGAE-------GLENVITLSDFRDHSFGKAYGVAIAEGP-LKG-LLARAVFVLDENNKVVYSELV 149 (167)
T ss_pred HHHHhC-------CCCCceEeecCCccHHHHHhCCeecccc-cCC-ceeeEEEEECCCCeEEEEEEC
Confidence 999853 665 8999995 5699999999754410 122 467899999999999866543
No 20
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.93 E-value=9.6e-25 Score=198.21 Aligned_cols=139 Identities=37% Similarity=0.659 Sum_probs=120.3
Q ss_pred CCCCCCCCCCceeeeEEcCcceeeecccc-CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhH
Q psy17178 240 IPFVSKPAPFWQGTAVVDGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH 318 (384)
Q Consensus 240 ~~~~g~~~P~f~l~~l~d~~g~~~~l~d~-~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~ 318 (384)
.+.+|+.+|+|+++++.+++++.++++++ +||++||+||+++|||+|+.|++.|++++++|+++|++|++||.|+++.+
T Consensus 67 ~~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h 146 (261)
T PTZ00137 67 SSLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSH 146 (261)
T ss_pred cccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHH
Confidence 34689999999998643566678999998 89999999999999999999999999999999999999999999999889
Q ss_pred HHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178 319 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER 379 (384)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~ 379 (384)
++|.+...+..+..+++||+++|++++++++||+... .|...|++||||++|+|++.+..
T Consensus 147 ~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~-~g~a~R~tFIID~dG~I~~~~~~ 206 (261)
T PTZ00137 147 KAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRD-EGFSHRASVLVDKAGVVKHVAVY 206 (261)
T ss_pred HHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCc-CCceecEEEEECCCCEEEEEEEe
Confidence 9998754333333378999999999999999999653 35678999999999999998854
No 21
>PRK13189 peroxiredoxin; Provisional
Probab=99.92 E-value=4.5e-25 Score=197.97 Aligned_cols=144 Identities=29% Similarity=0.529 Sum_probs=120.0
Q ss_pred cccCCCCCCccEEEeeecCccceEEcccc-CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhH
Q psy17178 50 SKNLSKPAPFWQGTAVVDGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH 128 (384)
Q Consensus 50 ~~~~G~~aP~f~l~~~~~~~g~~~~l~~~-~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~ 128 (384)
++.+|+++|+|++++. +| .++++++ +||++||+|||++|||+|.+|++.|++++++|+++|++|++||+|+.+.+
T Consensus 8 ~~~vG~~aPdF~~~~~---~g-~~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h 83 (222)
T PRK13189 8 MPLIGDKFPEFEVKTT---HG-PIKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSH 83 (222)
T ss_pred cccCCCcCCCcEeEcC---CC-CEeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHH
Confidence 4569999999999886 66 4788875 99999999999999999999999999999999999999999999999999
Q ss_pred HhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeeeeccCCccc
Q psy17178 129 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAW 205 (384)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~p~~~g~~w 205 (384)
.+|.+.+.+..+. +++||+++|.+++++++||+.....+ ....|++||||++|+|+... +++...++++
T Consensus 84 ~aw~~~~~~~~g~-~i~fPllsD~~~~ia~~ygv~~~~~~----~~~~r~tfIID~~G~Ir~~~---~~~~~~gr~~ 152 (222)
T PRK13189 84 IKWVEWIKEKLGV-EIEFPIIADDRGEIAKKLGMISPGKG----TNTVRAVFIIDPKGIIRAIL---YYPQEVGRNM 152 (222)
T ss_pred HHHHHhHHHhcCc-CcceeEEEcCccHHHHHhCCCccccC----CCceeEEEEECCCCeEEEEE---ecCCCCCCCH
Confidence 9999865443222 57999999999999999999654311 12568999999999998654 4566677764
No 22
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.92 E-value=3.2e-25 Score=181.47 Aligned_cols=123 Identities=23% Similarity=0.379 Sum_probs=112.2
Q ss_pred CCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhc
Q psy17178 53 LSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWV 132 (384)
Q Consensus 53 ~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~ 132 (384)
+|+++|+|++++. +|+.++|++++||++||+||+++|||.|..++++|++++++++++|+++++|+.|+.+.+++|.
T Consensus 1 vG~~~P~f~l~~~---~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~ 77 (124)
T PF00578_consen 1 VGDKAPDFTLTDS---DGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFL 77 (124)
T ss_dssp TTSBGGCEEEETT---TSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHH
T ss_pred CcCCCCCcEeECC---CCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhh
Confidence 6999999999877 9999999999999999999977799999999999999999999999999999999999999999
Q ss_pred cCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccc
Q psy17178 133 NTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNG 190 (384)
Q Consensus 133 ~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~ 190 (384)
+.. +++||+++|.++++++.||+.... .....|++||||++|+|++
T Consensus 78 ~~~-------~~~~~~~~D~~~~~~~~~~~~~~~-----~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 78 EEY-------GLPFPVLSDPDGELAKAFGIEDEK-----DTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp HHH-------TCSSEEEEETTSHHHHHTTCEETT-----TSEESEEEEEEETTSBEEE
T ss_pred hhh-------ccccccccCcchHHHHHcCCcccc-----CCceEeEEEEECCCCEEEe
Confidence 854 789999999999999999996543 2346789999999999975
No 23
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.92 E-value=5.4e-25 Score=186.93 Aligned_cols=134 Identities=22% Similarity=0.281 Sum_probs=114.1
Q ss_pred CCCCCCccEEEeeecCccceEEccc-cCCCeEEEEEeeCCCCCCchHH-HHHHHHhHHHHHhCCc-EEEEEeCCCHHhHH
Q psy17178 53 LSKPAPFWQGTAVVDGQLKEIKLSD-YYGKYLVFFFYPLDFTFVCPTE-ILAFNDRLEEFHQINT-EVVAASVDSHFTHL 129 (384)
Q Consensus 53 ~G~~aP~f~l~~~~~~~g~~~~l~~-~~gk~vvl~f~~~~~cp~C~~~-~~~l~~~~~~~~~~~v-~vi~Vs~d~~~~~~ 129 (384)
+|+++|+|++++..+++|++++|++ ++||++||+|||+.|||+|..| ++.|++.+++|++.|+ +|++||.|+++.++
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~ 80 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMK 80 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHH
Confidence 6999999999886333489999999 5999999999999999999999 9999999999999999 69999999999999
Q ss_pred hhccCccccCCCCcc--ceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccce
Q psy17178 130 AWVNTPRKEGGLGKL--KIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGG 194 (384)
Q Consensus 130 ~~~~~~~~~~~~~~~--~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g 194 (384)
+|++.. ++ +||+++|++++++++||++....-...+....|++|||| +|+|+.....
T Consensus 81 ~~~~~~-------~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~~~~ 139 (155)
T cd03013 81 AWGKAL-------GAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYLFVE 139 (155)
T ss_pred HHHHhh-------CCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEEEEe
Confidence 999864 54 899999999999999999865420001234579999999 7999865443
No 24
>PRK15000 peroxidase; Provisional
Probab=99.92 E-value=1.6e-24 Score=191.32 Aligned_cols=137 Identities=37% Similarity=0.660 Sum_probs=118.0
Q ss_pred CCCCCCCCceeeeEEcCcce---eeecccc-CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHh
Q psy17178 242 FVSKPAPFWQGTAVVDGQLK---EIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT 317 (384)
Q Consensus 242 ~~g~~~P~f~l~~l~d~~g~---~~~l~d~-~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~ 317 (384)
.+|+.+|+|+++++ ..+|+ .++++++ +||++||+||+++|||+|+.|++.|++++++|+++|++|++||.|+++.
T Consensus 3 ~vg~~aPdF~~~~~-~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~ 81 (200)
T PRK15000 3 LVTRQAPDFTAAAV-LGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFV 81 (200)
T ss_pred cCCCcCCCCEeecc-cCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHH
Confidence 47999999999865 23444 4566666 8999999999889999999999999999999999999999999999998
Q ss_pred HHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178 318 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER 379 (384)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~ 379 (384)
+++|.+...+..+..+++||+++|+++++++.||+...+.|...|++||||++|+|++.+..
T Consensus 82 ~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~ 143 (200)
T PRK15000 82 HNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVN 143 (200)
T ss_pred HHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEec
Confidence 89998765444443357999999999999999999776666789999999999999998764
No 25
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.92 E-value=1.3e-24 Score=183.75 Aligned_cols=130 Identities=34% Similarity=0.520 Sum_probs=117.7
Q ss_pred CCCCCCCCceeeeEEcCcceeeeccccCC-CeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHH
Q psy17178 242 FVSKPAPFWQGTAVVDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA 320 (384)
Q Consensus 242 ~~g~~~P~f~l~~l~d~~g~~~~l~d~~G-k~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~ 320 (384)
.+|+.+|+|++.+ .+|+.+++++++| |++||+||+++||+.|+.+++.|++++++++++++++++||.|+++.+++
T Consensus 2 ~~G~~~p~~~l~~---~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~ 78 (149)
T cd03018 2 EVGDKAPDFELPD---QNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRA 78 (149)
T ss_pred CCCCcCCCcEecC---CCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHH
Confidence 5799999999984 4899999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HhcCccccCCCCCcceeEEecCc--hHHHHHhCceecCCCceeeEEEEEeCCceEEEEEecCC
Q psy17178 321 WVNTPRKEGGLGKLKIPLLSDLT--HKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFERGN 381 (384)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~D~~--~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~~ 381 (384)
|++++ +++|++++|.+ +++++.||+...+.+.+.|++||||++|+|++.+....
T Consensus 79 ~~~~~-------~~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~~~~~ 134 (149)
T cd03018 79 WAEEN-------GLTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWVSDD 134 (149)
T ss_pred HHHhc-------CCCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEEecCC
Confidence 99876 78999999987 99999999976554556779999999999999887643
No 26
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.92 E-value=2e-24 Score=191.40 Aligned_cols=139 Identities=42% Similarity=0.775 Sum_probs=120.9
Q ss_pred CCCCCCCCCceeeeE-EcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178 241 PFVSKPAPFWQGTAV-VDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL 319 (384)
Q Consensus 241 ~~~g~~~P~f~l~~l-~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~ 319 (384)
+.+|+.+|+|++.++ .+.+|+.+++++++||++||+||+++||++|+.+++.|++++++|+++|++|++||.|+.+...
T Consensus 6 ~~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~ 85 (199)
T PTZ00253 6 AKINHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHL 85 (199)
T ss_pred cccCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHH
Confidence 358999999998863 2567889999999999999999999999999999999999999999999999999999998888
Q ss_pred HHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178 320 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER 379 (384)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~ 379 (384)
+|....+...+.++++||+++|+++++++.||++..+.+...|++||||++|+|++.+..
T Consensus 86 ~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~ 145 (199)
T PTZ00253 86 QWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVN 145 (199)
T ss_pred HHHhChHhhCCccccccceEECcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEEec
Confidence 886543333333358999999999999999999876666678999999999999998764
No 27
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.92 E-value=2e-24 Score=191.41 Aligned_cols=133 Identities=29% Similarity=0.548 Sum_probs=116.1
Q ss_pred CCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHH
Q psy17178 241 PFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA 320 (384)
Q Consensus 241 ~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~ 320 (384)
+.+|+.+|+|++.+. +| .+++++++||++||+|++++|||+|+.|++.|++++++|+++|++|++||.|+.+..++
T Consensus 2 ~~vG~~aP~F~~~~~---~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~ 77 (202)
T PRK13190 2 VKLGQKAPDFTVNTT---KG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIA 77 (202)
T ss_pred CCCCCCCCCcEEecC---CC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHH
Confidence 368999999999844 66 69999999999888777799999999999999999999999999999999999999889
Q ss_pred HhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178 321 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE 378 (384)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~ 378 (384)
|++.+.+..+. .++||+++|+++.++++||+.....|...|++||||++|+|++++.
T Consensus 78 w~~~~~~~~g~-~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~ 134 (202)
T PRK13190 78 WLRDIEERFGI-KIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIY 134 (202)
T ss_pred HHHhHHHhcCC-CceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEE
Confidence 98776443322 3689999999999999999976655667999999999999998774
No 28
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.92 E-value=7.5e-25 Score=186.45 Aligned_cols=137 Identities=18% Similarity=0.275 Sum_probs=117.4
Q ss_pred cccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178 50 SKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL 129 (384)
Q Consensus 50 ~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~ 129 (384)
.+.+|+++|+|++++. +|+.++|++++||++||+||+++|||.|+.+++.|++++++++++|+++|+||.|+++.++
T Consensus 3 ~~~~g~~~p~f~l~~~---~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~ 79 (154)
T PRK09437 3 PLKAGDIAPKFSLPDQ---DGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLS 79 (154)
T ss_pred cCCCCCcCCCcEeeCC---CCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHH
Confidence 4578999999999887 8999999999999999999988999999999999999999999999999999999999999
Q ss_pred hhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccc-eeEEEEEEEecCCCcccccceee
Q psy17178 130 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGS-LLSTAIFVYALTSPVNGYAGGAL 196 (384)
Q Consensus 130 ~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~-~~~~~~~vid~~G~v~~~~~g~~ 196 (384)
+|.+.. +++||++.|+++.++++||+...+.....+. ...+++||||++|+|+....|..
T Consensus 80 ~~~~~~-------~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~ 140 (154)
T PRK09437 80 RFAEKE-------LLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFK 140 (154)
T ss_pred HHHHHh-------CCCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcCCC
Confidence 998753 7899999999999999999976542110111 12257899999999998877643
No 29
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.92 E-value=3e-24 Score=180.42 Aligned_cols=125 Identities=27% Similarity=0.356 Sum_probs=112.1
Q ss_pred CCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHh
Q psy17178 243 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWV 322 (384)
Q Consensus 243 ~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~ 322 (384)
+|+.+|+|+++ |.+|+.+++++++||++||+||++.|||+|+.+++.|+++++++ .|+.|++||.|+++.+++|.
T Consensus 2 ~G~~aP~f~l~---~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~--~~~~vi~Is~d~~~~~~~~~ 76 (143)
T cd03014 2 VGDKAPDFTLV---TSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKL--DNTVVLTISADLPFAQKRWC 76 (143)
T ss_pred CCCCCCCcEEE---CCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhc--CCCEEEEEECCCHHHHHHHH
Confidence 68999999998 55999999999999999999997777999999999999999998 48999999999999999999
Q ss_pred cCccccCCCCC-cceeEEecCc-hHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178 323 NTPRKEGGLGK-LKIPLLSDLT-HKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER 379 (384)
Q Consensus 323 ~~~~~~~~~~~-~~~~~~~D~~-~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~ 379 (384)
+.+ + .++++++|.. +.++++||++....+...|++||||++|+|++.+..
T Consensus 77 ~~~-------~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~~~ 128 (143)
T cd03014 77 GAE-------GVDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVELV 128 (143)
T ss_pred Hhc-------CCCCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEEEC
Confidence 876 4 3799999996 999999999876555668999999999999998863
No 30
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.92 E-value=2e-24 Score=182.10 Aligned_cols=131 Identities=23% Similarity=0.308 Sum_probs=113.0
Q ss_pred CCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCC-CCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHH
Q psy17178 242 FVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLD-FTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA 320 (384)
Q Consensus 242 ~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~-~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~ 320 (384)
++|+.+|+|++++. +.+|+++++++++||++||+|| ++ |||+|..++|.|++++++++++++.+++|+.++.....+
T Consensus 1 k~G~~~P~~~~~~~-~~~g~~~~l~~~~gk~~vv~f~-~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~ 78 (146)
T PF08534_consen 1 KVGDKAPDFSLKDL-DLDGKPVSLSDFKGKPVVVNFW-ASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVRE 78 (146)
T ss_dssp STTSB--CCEEEEE-ETTSEEEEGGGGTTSEEEEEEE-STTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHH
T ss_pred CCCCCCCCeEEEee-cCCCCEecHHHhCCCeEEEEEE-ccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHH
Confidence 47999999999754 5799999999999999999999 66 999999999999999999999999999999987666888
Q ss_pred HhcCccccCCCCCcceeEEecCchHHHHHhCceecCC---CceeeEEEEEeCCceEEEEEecCC
Q psy17178 321 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ---GHTLDKYCLECYKMVIVYWFERGN 381 (384)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~---~~~~p~~~lId~~G~i~~~~~~~~ 381 (384)
|+++. +.+|+++.|+++.++++||+..... +..+|+++|||++|+|++++....
T Consensus 79 ~~~~~-------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~ 135 (146)
T PF08534_consen 79 FLKKY-------GINFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPD 135 (146)
T ss_dssp HHHHT-------TTTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSB
T ss_pred HHHhh-------CCCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCC
Confidence 88875 8999999999999999999842221 237999999999999999887543
No 31
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.92 E-value=7.6e-25 Score=185.27 Aligned_cols=131 Identities=34% Similarity=0.518 Sum_probs=116.1
Q ss_pred ccCCCCCCccEEEeeecCccceEEccccCC-CeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178 51 KNLSKPAPFWQGTAVVDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL 129 (384)
Q Consensus 51 ~~~G~~aP~f~l~~~~~~~g~~~~l~~~~g-k~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~ 129 (384)
+++|+++|+|++.+. +|+.+++++++| |++||+||+++|||.|+.+++.|++++++++++|+++++||.|+++.++
T Consensus 1 ~~~G~~~p~~~l~~~---~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~ 77 (149)
T cd03018 1 LEVGDKAPDFELPDQ---NGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLR 77 (149)
T ss_pred CCCCCcCCCcEecCC---CCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHH
Confidence 468999999999877 899999999999 9999999999999999999999999999999999999999999999999
Q ss_pred hhccCccccCCCCccceeEEeeCc--chhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178 130 AWVNTPRKEGGLGKLKIPLLSDLT--HKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL 196 (384)
Q Consensus 130 ~~~~~~~~~~~~~~~~~p~l~D~~--~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~ 196 (384)
+|.+.. +++||+++|.+ +++++.||+..... + ...+++||||++|+|++...|..
T Consensus 78 ~~~~~~-------~~~~~~~~D~~~~~~~~~~~g~~~~~~----~-~~~~~~~lid~~G~v~~~~~~~~ 134 (149)
T cd03018 78 AWAEEN-------GLTFPLLSDFWPHGEVAKAYGVFDEDL----G-VAERAVFVIDRDGIIRYAWVSDD 134 (149)
T ss_pred HHHHhc-------CCCceEecCCCchhHHHHHhCCccccC----C-CccceEEEECCCCEEEEEEecCC
Confidence 998753 78999999988 99999999975442 2 34568899999999997766654
No 32
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.92 E-value=5.8e-24 Score=183.11 Aligned_cols=128 Identities=27% Similarity=0.363 Sum_probs=112.5
Q ss_pred cCCCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhH
Q psy17178 239 AIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH 318 (384)
Q Consensus 239 ~~~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~ 318 (384)
..+.+|+.+|+|++. |.+|+.+++++++||++||+||++.|||+|..|++.|+++++++ .+++|++||.|+++.+
T Consensus 16 ~~~~~G~~~P~f~l~---~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~--~~~~vv~vs~D~~~~~ 90 (167)
T PRK00522 16 SLPQVGDKAPDFTLV---ANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAEL--DNTVVLCISADLPFAQ 90 (167)
T ss_pred CCCCCCCCCCCeEEE---cCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHc--CCcEEEEEeCCCHHHH
Confidence 345689999999998 55999999999999999999995555999999999999999998 4899999999999999
Q ss_pred HHHhcCccccCCCCCcc-eeEEec-CchHHHHHhCceecC---CCceeeEEEEEeCCceEEEEEe
Q psy17178 319 LAWVNTPRKEGGLGKLK-IPLLSD-LTHKISLDYGVYLSD---QGHTLDKYCLECYKMVIVYWFE 378 (384)
Q Consensus 319 ~~~~~~~~~~~~~~~~~-~~~~~D-~~~~~~~~~gv~~~~---~~~~~p~~~lId~~G~i~~~~~ 378 (384)
++|.+.+ +++ +++++| +++.+++.||+...+ .|...|++||||++|+|++.+.
T Consensus 91 ~~f~~~~-------~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~ 148 (167)
T PRK00522 91 KRFCGAE-------GLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSEL 148 (167)
T ss_pred HHHHHhC-------CCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEE
Confidence 9999876 665 799999 456999999997654 4567889999999999999885
No 33
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.92 E-value=1.7e-24 Score=192.21 Aligned_cols=141 Identities=28% Similarity=0.477 Sum_probs=117.4
Q ss_pred CCCCCCccEEEeeecCccceEEccccCC-CeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhh
Q psy17178 53 LSKPAPFWQGTAVVDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW 131 (384)
Q Consensus 53 ~G~~aP~f~l~~~~~~~g~~~~l~~~~g-k~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~ 131 (384)
+|+++|+|++++. +| .++|++++| |++||+|++++|||+|..|++.|++++++|+++|+++++||.|+.+.+++|
T Consensus 1 vG~~aP~F~~~~~---~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~ 76 (203)
T cd03016 1 LGDTAPNFEADTT---HG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKW 76 (203)
T ss_pred CcCCCCCeEEecC---CC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHH
Confidence 5899999999876 65 599999999 788888888999999999999999999999999999999999999999999
Q ss_pred ccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeeeeccCCcc
Q psy17178 132 VNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRA 204 (384)
Q Consensus 132 ~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~p~~~g~~ 204 (384)
.+.+++..+ .+++||+++|++++++++||+.....+ .+ ...|++||||++|+|+.... ++...+++
T Consensus 77 ~~~i~~~~~-~~~~fpil~D~~~~ia~~yg~~~~~~~--~~-~~~r~~fiID~~G~I~~~~~---~~~~~gr~ 142 (203)
T cd03016 77 IEDIEEYTG-VEIPFPIIADPDREVAKLLGMIDPDAG--ST-LTVRAVFIIDPDKKIRLILY---YPATTGRN 142 (203)
T ss_pred HhhHHHhcC-CCCceeEEECchHHHHHHcCCccccCC--CC-ceeeEEEEECCCCeEEEEEe---cCCCCCCC
Confidence 887644322 378999999999999999999754322 11 24589999999999986544 45555665
No 34
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.91 E-value=6.4e-24 Score=189.26 Aligned_cols=135 Identities=27% Similarity=0.446 Sum_probs=116.2
Q ss_pred CCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHH
Q psy17178 241 PFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA 320 (384)
Q Consensus 241 ~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~ 320 (384)
+.+|+.+|+|++.+ .+|+...+++++||++||+|++++|||+|..|++.|++++++|+++|++|++||.|+.+.+++
T Consensus 2 ~~~Gd~aPdF~l~t---~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~ 78 (215)
T PRK13599 2 KLLGEKFPSMEVVT---TQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIK 78 (215)
T ss_pred CCCCCCCCCCEeEC---CCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHH
Confidence 46899999999984 489988889999999877777799999999999999999999999999999999999999998
Q ss_pred HhcCccccCCCCCcceeEEecCchHHHHHhCceecCCC-ceeeEEEEEeCCceEEEEEec
Q psy17178 321 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-HTLDKYCLECYKMVIVYWFER 379 (384)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~-~~~p~~~lId~~G~i~~~~~~ 379 (384)
|.+.+++..+. +++||+++|+++++++.||+.....+ ...|++||||++|+|++++..
T Consensus 79 w~~~i~~~~~~-~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~ 137 (215)
T PRK13599 79 WVEWIKDNTNI-AIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYY 137 (215)
T ss_pred HHHhHHHhcCC-CCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEEc
Confidence 88765432111 68999999999999999998654333 268999999999999998764
No 35
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.91 E-value=7.5e-24 Score=188.95 Aligned_cols=137 Identities=27% Similarity=0.429 Sum_probs=116.1
Q ss_pred CCCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178 240 IPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL 319 (384)
Q Consensus 240 ~~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~ 319 (384)
.+.+|+.+|+|++.+. +|+....++++||++||+|++++|||+|+.|++.|++++++|+++|++|++||+|+...++
T Consensus 6 ~~~iG~~aPdF~l~~~---~G~~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~ 82 (215)
T PRK13191 6 IPLIGEKFPEMEVITT---HGKIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHI 82 (215)
T ss_pred cccCCCcCCCCEeecC---CCCEEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHH
Confidence 4568999999999844 7864433558999999888889999999999999999999999999999999999999999
Q ss_pred HHhcCccccCCCCCcceeEEecCchHHHHHhCceecCC-CceeeEEEEEeCCceEEEEEecC
Q psy17178 320 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ-GHTLDKYCLECYKMVIVYWFERG 380 (384)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~-~~~~p~~~lId~~G~i~~~~~~~ 380 (384)
+|.+..++..+. +++||+++|++++++++||++.... +...|++||||++|+|++++..+
T Consensus 83 aw~~~~~~~~~~-~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~ 143 (215)
T PRK13191 83 EWVMWIEKNLKV-EVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYP 143 (215)
T ss_pred HHHhhHHHhcCC-CCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEEecC
Confidence 988766443222 6899999999999999999975432 45789999999999999987643
No 36
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.91 E-value=8e-24 Score=180.13 Aligned_cols=129 Identities=21% Similarity=0.319 Sum_probs=115.1
Q ss_pred CCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHH
Q psy17178 241 PFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA 320 (384)
Q Consensus 241 ~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~ 320 (384)
..+|+.+|+|+++++ +|+.+++++++||++||+||++.|||.|+.+++.|++++++++++|+++|+||.|+++.+++
T Consensus 4 ~~~g~~~p~f~l~~~---~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~ 80 (154)
T PRK09437 4 LKAGDIAPKFSLPDQ---DGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSR 80 (154)
T ss_pred CCCCCcCCCcEeeCC---CCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHH
Confidence 357999999999854 99999999999999999999888999999999999999999999999999999999999999
Q ss_pred HhcCccccCCCCCcceeEEecCchHHHHHhCceecCC--C----ceeeEEEEEeCCceEEEEEec
Q psy17178 321 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ--G----HTLDKYCLECYKMVIVYWFER 379 (384)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~--~----~~~p~~~lId~~G~i~~~~~~ 379 (384)
|+++. +++|+++.|+++.++++||+...+. + ...|++||||++|+|++.|..
T Consensus 81 ~~~~~-------~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g 138 (154)
T PRK09437 81 FAEKE-------LLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDK 138 (154)
T ss_pred HHHHh-------CCCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcC
Confidence 99876 7899999999999999999865432 1 123788999999999999874
No 37
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.91 E-value=7.6e-24 Score=177.17 Aligned_cols=126 Identities=31% Similarity=0.363 Sum_probs=113.0
Q ss_pred CCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcC
Q psy17178 245 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNT 324 (384)
Q Consensus 245 ~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~ 324 (384)
+++|+|+++ |.+|+.+++++++||++||+||+++|||.|+.+++.|++++++++++++++++|++|+++.+++|.++
T Consensus 1 ~~~p~f~l~---~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~ 77 (140)
T cd03017 1 DKAPDFTLP---DQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEK 77 (140)
T ss_pred CCCCCcccc---CCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH
Confidence 468999998 45999999999999999999998899999999999999999999999999999999999999999988
Q ss_pred ccccCCCCCcceeEEecCchHHHHHhCceecC---CCceeeEEEEEeCCceEEEEEecC
Q psy17178 325 PRKEGGLGKLKIPLLSDLTHKISLDYGVYLSD---QGHTLDKYCLECYKMVIVYWFERG 380 (384)
Q Consensus 325 ~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~---~~~~~p~~~lId~~G~i~~~~~~~ 380 (384)
+ +++|+++.|+++.+++.||+...+ .+...|++||||++|+|++.+...
T Consensus 78 ~-------~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~ 129 (140)
T cd03017 78 Y-------GLPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKV 129 (140)
T ss_pred h-------CCCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEEecC
Confidence 6 789999999999999999996542 123458999999999999988643
No 38
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.91 E-value=3.7e-24 Score=180.46 Aligned_cols=136 Identities=21% Similarity=0.271 Sum_probs=112.1
Q ss_pred cCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhh
Q psy17178 52 NLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW 131 (384)
Q Consensus 52 ~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~ 131 (384)
++|+++|+|++++. +.+|++++|++++||++||+||++.|||+|+.++|.+++++++++++++++++|+.++.....+|
T Consensus 1 k~G~~~P~~~~~~~-~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~ 79 (146)
T PF08534_consen 1 KVGDKAPDFSLKDL-DLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREF 79 (146)
T ss_dssp STTSB--CCEEEEE-ETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHH
T ss_pred CCCCCCCCeEEEee-cCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHH
Confidence 58999999999762 33999999999999999999995549999999999999999999999999999998876557888
Q ss_pred ccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeee
Q psy17178 132 VNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALY 197 (384)
Q Consensus 132 ~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~ 197 (384)
.+. + +++||++.|.+++++++||+...... ..| ...|.+++||++|+|++...|...
T Consensus 80 ~~~---~----~~~~~~~~D~~~~~~~~~~~~~~~~~-~~~-~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 80 LKK---Y----GINFPVLSDPDGALAKALGVTIMEDP-GNG-FGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp HHH---T----TTTSEEEEETTSHHHHHTTCEEECCT-TTT-SSSSEEEEEETTSBEEEEEESSBT
T ss_pred HHh---h----CCCceEEechHHHHHHHhCCcccccc-ccC-CeecEEEEEECCCEEEEEEeCCCC
Confidence 774 3 78999999999999999998533211 011 356788999999999988888764
No 39
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.91 E-value=5.8e-24 Score=177.87 Aligned_cols=130 Identities=28% Similarity=0.362 Sum_probs=114.3
Q ss_pred CCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccC
Q psy17178 55 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNT 134 (384)
Q Consensus 55 ~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~ 134 (384)
+++|+|++++. +|+.+++++++||++||+||+++|||+|..+++.|++++++++++|+++++|+.|+++.+++|.+.
T Consensus 1 ~~~p~f~l~~~---~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~ 77 (140)
T cd03017 1 DKAPDFTLPDQ---DGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEK 77 (140)
T ss_pred CCCCCccccCC---CCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH
Confidence 47899999877 899999999999999999999999999999999999999999999999999999999999999885
Q ss_pred ccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178 135 PRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL 196 (384)
Q Consensus 135 ~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~ 196 (384)
. +++||+++|+++.++++||+.....+ ......|.+||||++|+|+....|..
T Consensus 78 ~-------~~~~~~l~D~~~~~~~~~gv~~~~~~--~~~~~~p~~~lid~~G~v~~~~~g~~ 130 (140)
T cd03017 78 Y-------GLPFPLLSDPDGKLAKAYGVWGEKKK--KYMGIERSTFLIDPDGKIVKVWRKVK 130 (140)
T ss_pred h-------CCCceEEECCccHHHHHhCCcccccc--ccCCcceeEEEECCCCEEEEEEecCC
Confidence 3 78999999999999999999765321 11233478999999999998887766
No 40
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.90 E-value=5.3e-23 Score=182.68 Aligned_cols=132 Identities=26% Similarity=0.404 Sum_probs=113.7
Q ss_pred CCCCCCCceeeeEEcCcceeeeccccCC-CeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHH
Q psy17178 243 VSKPAPFWQGTAVVDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW 321 (384)
Q Consensus 243 ~g~~~P~f~l~~l~d~~g~~~~l~d~~G-k~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~ 321 (384)
+|+.+|+|++.+. +| .+++++++| |++||+|++++|||+|..|++.|++++++|+++|++|++||.|+.+.+++|
T Consensus 1 vG~~aP~F~~~~~---~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~ 76 (203)
T cd03016 1 LGDTAPNFEADTT---HG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKW 76 (203)
T ss_pred CcCCCCCeEEecC---CC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHH
Confidence 5889999999854 66 589999999 788777777999999999999999999999999999999999999999999
Q ss_pred hcCccccCCCCCcceeEEecCchHHHHHhCceecC--CCceeeEEEEEeCCceEEEEEec
Q psy17178 322 VNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSD--QGHTLDKYCLECYKMVIVYWFER 379 (384)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~--~~~~~p~~~lId~~G~i~~~~~~ 379 (384)
.+.+++..+ .+++||+++|+++.++++||+.... .+...|++||||++|+|++.+..
T Consensus 77 ~~~i~~~~~-~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~ 135 (203)
T cd03016 77 IEDIEEYTG-VEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILYY 135 (203)
T ss_pred HhhHHHhcC-CCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEec
Confidence 887654333 2789999999999999999997543 23467899999999999998765
No 41
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.90 E-value=9e-23 Score=170.58 Aligned_cols=127 Identities=39% Similarity=0.548 Sum_probs=113.7
Q ss_pred CCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCc
Q psy17178 246 PAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTP 325 (384)
Q Consensus 246 ~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~ 325 (384)
.+|+|++.++ +|+++++++++||++||+||+++||+.|..+++.|+++++++++.++.+++|+.|+++.+++|.+++
T Consensus 1 ~~p~f~l~~~---~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~ 77 (140)
T cd02971 1 KAPDFTLPAT---DGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKE 77 (140)
T ss_pred CCCCceeccC---CCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcc
Confidence 3799999855 9999999999999999999999999999999999999999998889999999999999999998875
Q ss_pred cccCCCCCcceeEEecCchHHHHHhCceecCC---CceeeEEEEEeCCceEEEEEecCC
Q psy17178 326 RKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ---GHTLDKYCLECYKMVIVYWFERGN 381 (384)
Q Consensus 326 ~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~---~~~~p~~~lId~~G~i~~~~~~~~ 381 (384)
. +.+|+++.|+++.+++.||+...+. +...|++||||++|+|++.+....
T Consensus 78 ~------~~~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~~ 130 (140)
T cd02971 78 G------GLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVEVEPL 130 (140)
T ss_pred c------CCCceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEEecCC
Confidence 2 5789999999999999999976543 356789999999999999887654
No 42
>PRK13189 peroxiredoxin; Provisional
Probab=99.90 E-value=8.3e-23 Score=183.28 Aligned_cols=134 Identities=30% Similarity=0.520 Sum_probs=114.8
Q ss_pred CCCCCCCCCceeeeEEcCcceeeecccc-CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178 241 PFVSKPAPFWQGTAVVDGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL 319 (384)
Q Consensus 241 ~~~g~~~P~f~l~~l~d~~g~~~~l~d~-~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~ 319 (384)
+.+|+.+|+|+++++ +|+ ++++++ +||++||+|++++|||+|+.|++.|++++++|+++|++|++||+|+...+.
T Consensus 9 ~~vG~~aPdF~~~~~---~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~ 84 (222)
T PRK13189 9 PLIGDKFPEFEVKTT---HGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHI 84 (222)
T ss_pred ccCCCcCCCcEeEcC---CCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHH
Confidence 468999999999955 674 788775 999888888889999999999999999999999999999999999999999
Q ss_pred HHhcCccccCCCCCcceeEEecCchHHHHHhCceecCC-CceeeEEEEEeCCceEEEEEec
Q psy17178 320 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ-GHTLDKYCLECYKMVIVYWFER 379 (384)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~-~~~~p~~~lId~~G~i~~~~~~ 379 (384)
+|.+.+++..+. +++||+++|.++.++++||+..... +...|++||||++|+|++++..
T Consensus 85 aw~~~~~~~~g~-~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~ 144 (222)
T PRK13189 85 KWVEWIKEKLGV-EIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAILYY 144 (222)
T ss_pred HHHHhHHHhcCc-CcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEEec
Confidence 998876543322 5899999999999999999965432 2478999999999999998764
No 43
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.90 E-value=1.3e-22 Score=172.25 Aligned_cols=132 Identities=23% Similarity=0.321 Sum_probs=115.6
Q ss_pred CCCCCCCceeeeEEcCcceeeeccc-cCCCeEEEEEEeCCCCcCchHh-HHHHHHHHHHHHhCCc-EEEEEeCCCHHhHH
Q psy17178 243 VSKPAPFWQGTAVVDGQLKEIKLSD-YYGKYLVFFFYPLDFTFVCPTE-ILAFNDRLEEFHQINT-EVVAASVDSHFTHL 319 (384)
Q Consensus 243 ~g~~~P~f~l~~l~d~~g~~~~l~d-~~Gk~vvl~F~~a~~c~~C~~~-~~~l~~l~~~~~~~~v-~vv~Is~d~~~~~~ 319 (384)
+|+.+|+|++++..+.+|+.++|++ ++||++||+|+|+.|||.|..| ++.+++.+++|++.|+ .|++||.|+++.++
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~ 80 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMK 80 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHH
Confidence 5899999999854112389999999 5999999999999999999999 9999999999999999 69999999999999
Q ss_pred HHhcCccccCCCCCc--ceeEEecCchHHHHHhCceecCC--Cc---eeeEEEEEeCCceEEEEEecCCC
Q psy17178 320 AWVNTPRKEGGLGKL--KIPLLSDLTHKISLDYGVYLSDQ--GH---TLDKYCLECYKMVIVYWFERGNC 382 (384)
Q Consensus 320 ~~~~~~~~~~~~~~~--~~~~~~D~~~~~~~~~gv~~~~~--~~---~~p~~~lId~~G~i~~~~~~~~~ 382 (384)
+|.++. ++ +|++++|++++++++||+..... +. ..+.+|||| +|+|++++....+
T Consensus 81 ~~~~~~-------~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~~~~~~~ 142 (155)
T cd03013 81 AWGKAL-------GAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYLFVEEDP 142 (155)
T ss_pred HHHHhh-------CCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEEEEecCC
Confidence 999986 55 89999999999999999976543 22 578999999 7999999886543
No 44
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.89 E-value=8.1e-23 Score=170.85 Aligned_cols=131 Identities=40% Similarity=0.619 Sum_probs=115.5
Q ss_pred CCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCc
Q psy17178 56 PAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTP 135 (384)
Q Consensus 56 ~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~ 135 (384)
.+|+|++.+. +|+++++++++||+++|+||+++|||+|..+++.|+++++++++.++++++|+.|+++.+++|.+..
T Consensus 1 ~~p~f~l~~~---~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~ 77 (140)
T cd02971 1 KAPDFTLPAT---DGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKE 77 (140)
T ss_pred CCCCceeccC---CCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcc
Confidence 4799999887 8999999999999999999999999999999999999999998889999999999999999998853
Q ss_pred cccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeee
Q psy17178 136 RKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALY 197 (384)
Q Consensus 136 ~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~ 197 (384)
++.+||+++|+++.++++||+...+.. .+....|++||||++|+|++...|..+
T Consensus 78 ------~~~~~~~l~D~~~~~~~~~g~~~~~~~--~~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 78 ------GGLNFPLLSDPDGEFAKAYGVLIEKSA--GGGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred ------cCCCceEEECCChHHHHHcCCcccccc--ccCceeEEEEEECCCCcEEEEEecCCC
Confidence 156899999999999999999765521 223457899999999999988888775
No 45
>KOG0852|consensus
Probab=99.89 E-value=8.1e-23 Score=168.17 Aligned_cols=136 Identities=61% Similarity=1.043 Sum_probs=126.6
Q ss_pred cccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178 50 SKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL 129 (384)
Q Consensus 50 ~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~ 129 (384)
++.+..++|+|....++|+.-+.++|++|+||+|++.|||..+.-+|++|+-.+.+.+++|++.|.+|+++|+|+.+.+.
T Consensus 3 ~~~~~~p~p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshl 82 (196)
T KOG0852|consen 3 MEVVFKPAPDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHL 82 (196)
T ss_pred ccccCCCCCCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhh
Confidence 44577888999999989998999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccc
Q psy17178 130 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNG 190 (384)
Q Consensus 130 ~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~ 190 (384)
+|+...++..+.+++++|+++|.+.++++.|||+.+++| ..-|..||||++|.+|.
T Consensus 83 AW~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~G-----~~lRglfIId~~gi~R~ 138 (196)
T KOG0852|consen 83 AWINTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDEG-----IALRGLFIIDPDGILRQ 138 (196)
T ss_pred hHhcCchhhCCcCccccceeeccchhhHHhcCceecCCC-----cceeeeEEEccccceEE
Confidence 999999999888889999999999999999999998876 44567789999999974
No 46
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.88 E-value=8.1e-23 Score=172.59 Aligned_cols=129 Identities=19% Similarity=0.149 Sum_probs=108.9
Q ss_pred CCCccEEEeeecCccceEEccccC-CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccC
Q psy17178 56 PAPFWQGTAVVDGQLKEIKLSDYY-GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNT 134 (384)
Q Consensus 56 ~aP~f~l~~~~~~~g~~~~l~~~~-gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~ 134 (384)
.+|+|++++. +|+++++++++ +|++||+||+++|||+|+.+++.|+++++++++.|+++++|+.|+.+...+|.+.
T Consensus 1 ~~p~f~l~~~---~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~ 77 (149)
T cd02970 1 TAPDFELPDA---GGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKG 77 (149)
T ss_pred CCCCccccCC---CCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHh
Confidence 4799999887 89999999986 5788899988999999999999999999999999999999999998888778774
Q ss_pred ccccCCCCccceeEEeeCcchhHHhhcCcccCC------------------CCcccceeEEEEEEEecCCCcccccce
Q psy17178 135 PRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ------------------GPVRGSLLSTAIFVYALTSPVNGYAGG 194 (384)
Q Consensus 135 ~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~------------------g~~~g~~~~~~~~vid~~G~v~~~~~g 194 (384)
. +++||+++|++++++++||+..... +........+++||||++|+|+..+.|
T Consensus 78 ~-------~~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 78 K-------FLPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred c-------CCCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence 3 7899999999999999999964331 111122356899999999999977654
No 47
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.88 E-value=3.5e-22 Score=168.68 Aligned_cols=124 Identities=20% Similarity=0.165 Sum_probs=108.4
Q ss_pred CCCCceeeeEEcCcceeeeccccC-CCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcC
Q psy17178 246 PAPFWQGTAVVDGQLKEIKLSDYY-GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNT 324 (384)
Q Consensus 246 ~~P~f~l~~l~d~~g~~~~l~d~~-Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~ 324 (384)
.+|+|+++++ +|+.++++++. +|++||+||+++|||+|+.+++.|+++++++++.|+++++|+.|+.+...+|.+.
T Consensus 1 ~~p~f~l~~~---~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~ 77 (149)
T cd02970 1 TAPDFELPDA---GGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKG 77 (149)
T ss_pred CCCCccccCC---CCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHh
Confidence 3799999854 99999999985 5778888887999999999999999999999999999999999998888888876
Q ss_pred ccccCCCCCcceeEEecCchHHHHHhCceecC-----------------------CCceeeEEEEEeCCceEEEEEec
Q psy17178 325 PRKEGGLGKLKIPLLSDLTHKISLDYGVYLSD-----------------------QGHTLDKYCLECYKMVIVYWFER 379 (384)
Q Consensus 325 ~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~-----------------------~~~~~p~~~lId~~G~i~~~~~~ 379 (384)
. +++||+++|+++.+.++||+.... .+...|++||||++|+|++.|..
T Consensus 78 ~-------~~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 78 K-------FLPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred c-------CCCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence 5 789999999999999999996322 12468999999999999998763
No 48
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.88 E-value=6.3e-22 Score=173.39 Aligned_cols=120 Identities=18% Similarity=0.209 Sum_probs=102.3
Q ss_pred CCCCCCCCCceeeeEEcCcceeeecccc-CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC-CHHhH
Q psy17178 241 PFVSKPAPFWQGTAVVDGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD-SHFTH 318 (384)
Q Consensus 241 ~~~g~~~P~f~l~~l~d~~g~~~~l~d~-~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d-~~~~~ 318 (384)
..+|+.+|+|+++++ +.+|+.++++++ +||+++|+|| ++||++|+.++|.|+++++ ++++|++|+.| +++..
T Consensus 39 ~~~g~~~p~f~l~~~-~g~g~~~~~~~~~~gk~vvv~Fw-atwC~~C~~e~p~l~~l~~----~~~~vi~v~~~~~~~~~ 112 (185)
T PRK15412 39 ALIGKPVPKFRLESL-ENPGQFYQADVLTQGKPVLLNVW-ATWCPTCRAEHQYLNQLSA----QGIRVVGMNYKDDRQKA 112 (185)
T ss_pred hhcCCCCCCcCCccC-CCCCccccHHHhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHH----cCCEEEEEECCCCHHHH
Confidence 357999999999966 333678888776 8999999999 9999999999999988753 58999999975 56778
Q ss_pred HHHhcCccccCCCCCcceeE-EecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178 319 LAWVNTPRKEGGLGKLKIPL-LSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER 379 (384)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~ 379 (384)
++|++++ +.+|++ +.|+++.+.+.||+ ...|++|+||++|+|++++..
T Consensus 113 ~~~~~~~-------~~~~~~~~~D~~~~~~~~~gv------~~~P~t~vid~~G~i~~~~~G 161 (185)
T PRK15412 113 ISWLKEL-------GNPYALSLFDGDGMLGLDLGV------YGAPETFLIDGNGIIRYRHAG 161 (185)
T ss_pred HHHHHHc-------CCCCceEEEcCCccHHHhcCC------CcCCeEEEECCCceEEEEEec
Confidence 8898876 788884 78999999999999 678999999999999997763
No 49
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.88 E-value=2.4e-22 Score=177.46 Aligned_cols=135 Identities=13% Similarity=0.100 Sum_probs=103.8
Q ss_pred cCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeC--------C
Q psy17178 52 NLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV--------D 123 (384)
Q Consensus 52 ~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~--------d 123 (384)
..|..+|+|++++. +|+.++|++++||++||+|| ++|||+|+.|+|.|++++++|+++|++||+|+. |
T Consensus 14 ~~~~~~pdf~l~d~---~G~~vsL~~~kGkvvlv~fw-AswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d 89 (199)
T PTZ00056 14 ELRKSIYDYTVKTL---EGTTVPMSSLKNKVLMITNS-ASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFP 89 (199)
T ss_pred hcCCCCCceEEECC---CCCEEeHHHhCCCEEEEEEE-CCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCC
Confidence 36789999999887 99999999999999999999 999999999999999999999999999999996 4
Q ss_pred CHHhHHhhccCccccCCCCccceeEEeeC------cchhHHhhc----CcccCCCCcccceeEEEEEEEecCCCcccccc
Q psy17178 124 SHFTHLAWVNTPRKEGGLGKLKIPLLSDL------THKISLDYG----VYLSDQGPVRGSLLSTAIFVYALTSPVNGYAG 193 (384)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~p~l~D~------~~~~~~~yg----v~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~ 193 (384)
+.+.+++|++. + +++||+++|. ...+.+.++ ..+...|...++...+.+||||++|+|+.+..
T Consensus 90 ~~e~~~~f~~~---~----~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~ 162 (199)
T PTZ00056 90 NTKDIRKFNDK---N----KIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFS 162 (199)
T ss_pred CHHHHHHHHHH---c----CCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeC
Confidence 56778888874 3 8899999863 223332221 11111122122222246899999999998777
Q ss_pred eeee
Q psy17178 194 GALY 197 (384)
Q Consensus 194 g~~~ 197 (384)
|...
T Consensus 163 g~~~ 166 (199)
T PTZ00056 163 PRTE 166 (199)
T ss_pred CCCC
Confidence 7553
No 50
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.88 E-value=3.3e-22 Score=164.29 Aligned_cols=107 Identities=13% Similarity=0.058 Sum_probs=97.9
Q ss_pred cceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeC------CCHHhHHHHhcCccccCCCC
Q psy17178 259 QLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV------DSHFTHLAWVNTPRKEGGLG 332 (384)
Q Consensus 259 ~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~------d~~~~~~~~~~~~~~~~~~~ 332 (384)
.|+++++++++||++||+|| ++|||+|..++|.|++++++++++++.+++|+. ++++.+++|++++
T Consensus 12 ~~~~v~l~~~~gk~vvl~F~-a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~------- 83 (126)
T cd03012 12 TDKPLSLAQLRGKVVLLDFW-TYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRY------- 83 (126)
T ss_pred CCCccCHHHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHc-------
Confidence 45789999999999999999 999999999999999999999999999999986 4577888888876
Q ss_pred CcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178 333 KLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER 379 (384)
Q Consensus 333 ~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~ 379 (384)
+++||++.|+++.+.+.|++ ...|++||||++|+|++++..
T Consensus 84 ~~~~p~~~D~~~~~~~~~~v------~~~P~~~vid~~G~v~~~~~G 124 (126)
T cd03012 84 GITYPVANDNDYATWRAYGN------QYWPALYLIDPTGNVRHVHFG 124 (126)
T ss_pred CCCCCEEECCchHHHHHhCC------CcCCeEEEECCCCcEEEEEec
Confidence 89999999999999999998 688999999999999998764
No 51
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.87 E-value=2.9e-22 Score=170.06 Aligned_cols=121 Identities=13% Similarity=0.045 Sum_probs=97.7
Q ss_pred CCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC--------CHHhH
Q psy17178 247 APFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD--------SHFTH 318 (384)
Q Consensus 247 ~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d--------~~~~~ 318 (384)
+|+|+++ |.+|+++++++++||++||+|| ++||| |..|+|.|++++++|+++|+.|++|+.| +++.+
T Consensus 2 ~~~f~l~---d~~G~~v~l~~~~Gk~vvl~fw-atwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~ 76 (152)
T cd00340 2 IYDFSVK---DIDGEPVSLSKYKGKVLLIVNV-ASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEI 76 (152)
T ss_pred cceeEEE---CCCCCEEeHHHhCCCEEEEEEE-cCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHH
Confidence 6899998 5599999999999999999999 99999 9999999999999999899999999864 46778
Q ss_pred HHHhcC-ccccCCCCCcceeEEecC--chH-HHHHhCceec--C-----CCceeeEEEEEeCCceEEEEEec
Q psy17178 319 LAWVNT-PRKEGGLGKLKIPLLSDL--THK-ISLDYGVYLS--D-----QGHTLDKYCLECYKMVIVYWFER 379 (384)
Q Consensus 319 ~~~~~~-~~~~~~~~~~~~~~~~D~--~~~-~~~~~gv~~~--~-----~~~~~p~~~lId~~G~i~~~~~~ 379 (384)
++|+++ . +++||++.|. ++. ..+.|++... + .-.+.+++||||++|+|++++..
T Consensus 77 ~~f~~~~~-------~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G 141 (152)
T cd00340 77 KEFCETNY-------GVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAP 141 (152)
T ss_pred HHHHHHhc-------CCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECC
Confidence 889875 4 7899999864 333 4556663211 1 00224589999999999998764
No 52
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.87 E-value=2.1e-22 Score=170.99 Aligned_cols=131 Identities=11% Similarity=0.082 Sum_probs=102.1
Q ss_pred CCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC--------CHHhH
Q psy17178 57 APFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD--------SHFTH 128 (384)
Q Consensus 57 aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d--------~~~~~ 128 (384)
+|+|++++. +|++++|++++||++||+|| ++||| |+.|+|.|++++++|+++|+++++|+.| +.+.+
T Consensus 2 ~~~f~l~d~---~G~~v~l~~~~Gk~vvl~fw-atwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~ 76 (152)
T cd00340 2 IYDFSVKDI---DGEPVSLSKYKGKVLLIVNV-ASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEI 76 (152)
T ss_pred cceeEEECC---CCCEEeHHHhCCCEEEEEEE-cCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHH
Confidence 689999877 99999999999999999999 99999 9999999999999999899999999874 35678
Q ss_pred HhhccCccccCCCCccceeEEeeC--cch-hHHhhcCcccCC-CC-cccceeEEEEEEEecCCCcccccceeeee
Q psy17178 129 LAWVNTPRKEGGLGKLKIPLLSDL--THK-ISLDYGVYLSDQ-GP-VRGSLLSTAIFVYALTSPVNGYAGGALYS 198 (384)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~p~l~D~--~~~-~~~~ygv~~~~~-g~-~~g~~~~~~~~vid~~G~v~~~~~g~~~p 198 (384)
++|++. ++ +++||+++|. ++. .++.|+++.... +. .......+++||||++|+|+....|.+.+
T Consensus 77 ~~f~~~--~~----~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~ 145 (152)
T cd00340 77 KEFCET--NY----GVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDP 145 (152)
T ss_pred HHHHHH--hc----CCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCH
Confidence 888863 12 7899999874 343 566777532210 00 01112235789999999999988887643
No 53
>PLN02412 probable glutathione peroxidase
Probab=99.86 E-value=6.4e-22 Score=170.33 Aligned_cols=133 Identities=13% Similarity=0.110 Sum_probs=105.6
Q ss_pred CCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC--------CHH
Q psy17178 55 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD--------SHF 126 (384)
Q Consensus 55 ~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d--------~~~ 126 (384)
+.+|+|++++. +|+.++|++++||++||+|| ++|||+|+.++|.|++++++|+++|++|++|+.| +.+
T Consensus 7 ~~~pdf~l~d~---~G~~v~l~~~~gk~vlv~f~-a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~ 82 (167)
T PLN02412 7 KSIYDFTVKDI---GGNDVSLNQYKGKVLLIVNV-ASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNE 82 (167)
T ss_pred CCCCceEEECC---CCCEEeHHHhCCCEEEEEEe-CCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHH
Confidence 67999999887 99999999999999999999 9999999999999999999999999999999975 333
Q ss_pred h-HHhhccCccccCCCCccceeEEee--Ccc-hhHHhhcCcccCCCC--cccceeEEEEEEEecCCCcccccceeeee
Q psy17178 127 T-HLAWVNTPRKEGGLGKLKIPLLSD--LTH-KISLDYGVYLSDQGP--VRGSLLSTAIFVYALTSPVNGYAGGALYS 198 (384)
Q Consensus 127 ~-~~~~~~~~~~~~~~~~~~~p~l~D--~~~-~~~~~ygv~~~~~g~--~~g~~~~~~~~vid~~G~v~~~~~g~~~p 198 (384)
. .+.|.+. + +++||+++| .++ ..++.|+++....+. ..++...|++||||++|+|+....|...+
T Consensus 83 ~~~~~~~~~---~----~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~ 153 (167)
T PLN02412 83 EIQQTVCTR---F----KAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSP 153 (167)
T ss_pred HHHHHHHHc---c----CCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCH
Confidence 3 3444453 3 789999974 554 788888865433221 12233357899999999999888877743
No 54
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.86 E-value=9e-21 Score=164.38 Aligned_cols=126 Identities=24% Similarity=0.294 Sum_probs=112.9
Q ss_pred cccCCCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCC-H
Q psy17178 237 SRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-H 315 (384)
Q Consensus 237 ~~~~~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~-~ 315 (384)
....+.+|+.+|+|++.++ +|+.+++++++||+++|+|| ++||+.|+.+++.|+++++++++.++++++|+.|+ .
T Consensus 31 ~~~~~~~g~~~p~~~~~~~---~g~~~~l~~~~~k~~~l~f~-a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~ 106 (173)
T PRK03147 31 DKEKVQVGKEAPNFVLTDL---EGKKIELKDLKGKGVFLNFW-GTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETE 106 (173)
T ss_pred cccccCCCCCCCCcEeecC---CCCEEeHHHcCCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCH
Confidence 3345678999999999854 99999999999999999999 99999999999999999999998889999999974 4
Q ss_pred HhHHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178 316 FTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER 379 (384)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~ 379 (384)
+..++|.+++ +.+|+++.|.++.+.+.||+ ...|++|+||++|+|+..+..
T Consensus 107 ~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~v------~~~P~~~lid~~g~i~~~~~g 157 (173)
T PRK03147 107 LAVKNFVNRY-------GLTFPVAIDKGRQVIDAYGV------GPLPTTFLIDKDGKVVKVITG 157 (173)
T ss_pred HHHHHHHHHh-------CCCceEEECCcchHHHHcCC------CCcCeEEEECCCCcEEEEEeC
Confidence 6778888776 78999999999999999999 678999999999999987754
No 55
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.86 E-value=2e-21 Score=174.45 Aligned_cols=127 Identities=15% Similarity=0.119 Sum_probs=102.5
Q ss_pred CCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC--------
Q psy17178 242 FVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD-------- 313 (384)
Q Consensus 242 ~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d-------- 313 (384)
..|+.+|+|+++ |.+|+.+++++++||++||+|| ++||++|..++|.|++++++|+++|++||+|+.|
T Consensus 74 ~~g~~aPdF~l~---d~~G~~vsLsd~kGK~vvl~Fw-AswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~ 149 (236)
T PLN02399 74 ATEKSVHDFTVK---DIDGKDVALSKFKGKVLLIVNV-ASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPG 149 (236)
T ss_pred hcCCCCCceEEE---CCCCCEEeHHHhCCCeEEEEEE-cCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCC
Confidence 478999999998 5599999999999999999999 9999999999999999999999999999999963
Q ss_pred CHHhHHHHh-cCccccCCCCCcceeEEec--Cch-HHHHHhCceecCC----C---ceeeEEEEEeCCceEEEEEec
Q psy17178 314 SHFTHLAWV-NTPRKEGGLGKLKIPLLSD--LTH-KISLDYGVYLSDQ----G---HTLDKYCLECYKMVIVYWFER 379 (384)
Q Consensus 314 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~D--~~~-~~~~~~gv~~~~~----~---~~~p~~~lId~~G~i~~~~~~ 379 (384)
+.+++++|+ +++ +++||++.| .++ .+...|++..... + ...|++||||++|+|+++|..
T Consensus 150 s~~ei~~f~~~~~-------g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G 219 (236)
T PLN02399 150 SNPEIKQFACTRF-------KAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPP 219 (236)
T ss_pred CHHHHHHHHHHhc-------CCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECC
Confidence 456777776 444 789999854 444 4555554310000 0 246899999999999998864
No 56
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.86 E-value=8.4e-22 Score=176.81 Aligned_cols=138 Identities=14% Similarity=0.128 Sum_probs=108.5
Q ss_pred cccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC------
Q psy17178 50 SKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD------ 123 (384)
Q Consensus 50 ~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d------ 123 (384)
....|+.+|+|++++. +|+.++|++++||++||+|| ++|||+|..++|+|++++++|+++|++||+|+.|
T Consensus 72 ~~~~g~~aPdF~l~d~---~G~~vsLsd~kGK~vvl~Fw-AswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e 147 (236)
T PLN02399 72 RAATEKSVHDFTVKDI---DGKDVALSKFKGKVLLIVNV-ASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQE 147 (236)
T ss_pred chhcCCCCCceEEECC---CCCEEeHHHhCCCeEEEEEE-cCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccC
Confidence 4458999999999887 99999999999999999999 9999999999999999999999999999999964
Q ss_pred --CHHhHHhhc-cCccccCCCCccceeEEee--Ccc-hhHHhhcCcccCCCCccc--ceeEEEEEEEecCCCccccccee
Q psy17178 124 --SHFTHLAWV-NTPRKEGGLGKLKIPLLSD--LTH-KISLDYGVYLSDQGPVRG--SLLSTAIFVYALTSPVNGYAGGA 195 (384)
Q Consensus 124 --~~~~~~~~~-~~~~~~~~~~~~~~p~l~D--~~~-~~~~~ygv~~~~~g~~~g--~~~~~~~~vid~~G~v~~~~~g~ 195 (384)
+.+.+++|+ ++ + +++||++.| .++ .++..|++.....|...| +...+.+||||++|+|+..+.|.
T Consensus 148 ~~s~~ei~~f~~~~---~----g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~ 220 (236)
T PLN02399 148 PGSNPEIKQFACTR---F----KAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPT 220 (236)
T ss_pred CCCHHHHHHHHHHh---c----CCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCC
Confidence 445677776 33 2 789999864 444 566777753221111101 12246799999999999988887
Q ss_pred eee
Q psy17178 196 LYS 198 (384)
Q Consensus 196 ~~p 198 (384)
+.+
T Consensus 221 ~~~ 223 (236)
T PLN02399 221 TSP 223 (236)
T ss_pred CCH
Confidence 744
No 57
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.86 E-value=4.3e-21 Score=169.55 Aligned_cols=126 Identities=12% Similarity=-0.010 Sum_probs=100.3
Q ss_pred CCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeC--------C
Q psy17178 242 FVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV--------D 313 (384)
Q Consensus 242 ~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~--------d 313 (384)
..+..+|+|+++ |.+|+.+++++++||++||+|| ++|||+|..|+|.|++++++|+++|++||+|+. |
T Consensus 14 ~~~~~~pdf~l~---d~~G~~vsL~~~kGkvvlv~fw-AswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d 89 (199)
T PTZ00056 14 ELRKSIYDYTVK---TLEGTTVPMSSLKNKVLMITNS-ASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFP 89 (199)
T ss_pred hcCCCCCceEEE---CCCCCEEeHHHhCCCEEEEEEE-CCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCC
Confidence 357889999998 4599999999999999999999 999999999999999999999999999999986 5
Q ss_pred CHHhHHHHhcCccccCCCCCcceeEEecC------chHHHHH--------hCceecCCCc-eeeEEEEEeCCceEEEEEe
Q psy17178 314 SHFTHLAWVNTPRKEGGLGKLKIPLLSDL------THKISLD--------YGVYLSDQGH-TLDKYCLECYKMVIVYWFE 378 (384)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~------~~~~~~~--------~gv~~~~~~~-~~p~~~lId~~G~i~~~~~ 378 (384)
+++.+++|++++ +++||++.|. ...+.+. |+......+. ..+++||||++|+|++++.
T Consensus 90 ~~e~~~~f~~~~-------~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~ 162 (199)
T PTZ00056 90 NTKDIRKFNDKN-------KIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFS 162 (199)
T ss_pred CHHHHHHHHHHc-------CCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeC
Confidence 677889998876 8999998752 2333322 2221111111 2247999999999998665
No 58
>PLN02412 probable glutathione peroxidase
Probab=99.85 E-value=3.5e-21 Score=165.79 Aligned_cols=123 Identities=14% Similarity=0.100 Sum_probs=99.3
Q ss_pred CCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC--------CHH
Q psy17178 245 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD--------SHF 316 (384)
Q Consensus 245 ~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d--------~~~ 316 (384)
+.+|+|+++ |.+|+.+++++++||++||+|| ++|||+|..++|.|++++++|+++|+.|++||.| +.+
T Consensus 7 ~~~pdf~l~---d~~G~~v~l~~~~gk~vlv~f~-a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~ 82 (167)
T PLN02412 7 KSIYDFTVK---DIGGNDVSLNQYKGKVLLIVNV-ASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNE 82 (167)
T ss_pred CCCCceEEE---CCCCCEEeHHHhCCCEEEEEEe-CCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHH
Confidence 679999998 5599999999999999999999 9999999999999999999999999999999974 344
Q ss_pred hHHH-HhcCccccCCCCCcceeEEec--Cc-hHHHHHhCceecCC------C-ceeeEEEEEeCCceEEEEEe
Q psy17178 317 THLA-WVNTPRKEGGLGKLKIPLLSD--LT-HKISLDYGVYLSDQ------G-HTLDKYCLECYKMVIVYWFE 378 (384)
Q Consensus 317 ~~~~-~~~~~~~~~~~~~~~~~~~~D--~~-~~~~~~~gv~~~~~------~-~~~p~~~lId~~G~i~~~~~ 378 (384)
.+.+ |.+++ +++||++.| .+ ....+.|++..... + ...|++||||++|+|++++.
T Consensus 83 ~~~~~~~~~~-------~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~ 148 (167)
T PLN02412 83 EIQQTVCTRF-------KAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYA 148 (167)
T ss_pred HHHHHHHHcc-------CCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEEC
Confidence 4444 45655 899999873 44 36666676432110 0 23689999999999999886
No 59
>KOG0852|consensus
Probab=99.85 E-value=1.2e-20 Score=155.42 Aligned_cols=138 Identities=61% Similarity=0.986 Sum_probs=130.7
Q ss_pred CCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHH
Q psy17178 242 FVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW 321 (384)
Q Consensus 242 ~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~ 321 (384)
.+..++|+|+.+.+.|+.-+.++|+||+||+|++.||+..++-+|+.|+-.+...+++|++.|.+|+++|+|+...+.+|
T Consensus 5 ~~~~p~p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlAW 84 (196)
T KOG0852|consen 5 VVFKPAPDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLAW 84 (196)
T ss_pred ccCCCCCCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhhH
Confidence 45567799999999999889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178 322 VNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER 379 (384)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~ 379 (384)
+..-++++|.++.++|+++|.++++++.||++..+.|...+..||||++|.+|.+-.+
T Consensus 85 ~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it~N 142 (196)
T KOG0852|consen 85 INTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQITIN 142 (196)
T ss_pred hcCchhhCCcCccccceeeccchhhHHhcCceecCCCcceeeeEEEccccceEEeeec
Confidence 9999999999999999999999999999999999999999999999999999986543
No 60
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.85 E-value=2.5e-21 Score=169.21 Aligned_cols=135 Identities=13% Similarity=0.106 Sum_probs=102.3
Q ss_pred CCCCCCccEEEeeecCccceEEccccCCCeEE-EEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC-------
Q psy17178 53 LSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLV-FFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS------- 124 (384)
Q Consensus 53 ~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vv-l~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~------- 124 (384)
.++.+|+|++++. +|++++|++++||++| +.+| ++|||+|+.|+|.|++++++|+++|+++++||.|+
T Consensus 16 ~~~~~p~f~l~d~---~G~~vsLs~~~Gk~vvlv~n~-atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~ 91 (183)
T PTZ00256 16 PTKSFFEFEAIDI---DGQLVQLSKFKGKKAIIVVNV-ACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPW 91 (183)
T ss_pred CCCcccceEeEcC---CCCEEeHHHhCCCcEEEEEEE-CCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCC
Confidence 4678999999887 9999999999999765 4557 99999999999999999999999999999999752
Q ss_pred -HHhHHhhccCccccCCCCccceeEEee--Ccchh-HHhhcCcccCC-------CCcccceeEEEEEEEecCCCcccccc
Q psy17178 125 -HFTHLAWVNTPRKEGGLGKLKIPLLSD--LTHKI-SLDYGVYLSDQ-------GPVRGSLLSTAIFVYALTSPVNGYAG 193 (384)
Q Consensus 125 -~~~~~~~~~~~~~~~~~~~~~~p~l~D--~~~~~-~~~ygv~~~~~-------g~~~g~~~~~~~~vid~~G~v~~~~~ 193 (384)
.+...+|.+. ++ +++||+++| .++.. ++.|+.+.... +...+++.++++||||++|+|+..+.
T Consensus 92 ~~~~~~~f~~~--~~----~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~ 165 (183)
T PTZ00256 92 DEPEIKEYVQK--KF----NVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFS 165 (183)
T ss_pred CHHHHHHHHHH--hc----CCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEEC
Confidence 3455566431 22 789999966 45543 45564433221 11234555668899999999998887
Q ss_pred eeee
Q psy17178 194 GALY 197 (384)
Q Consensus 194 g~~~ 197 (384)
|...
T Consensus 166 g~~~ 169 (183)
T PTZ00256 166 PKVN 169 (183)
T ss_pred CCCC
Confidence 7653
No 61
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.85 E-value=6.6e-21 Score=165.03 Aligned_cols=118 Identities=23% Similarity=0.218 Sum_probs=106.4
Q ss_pred CCCCCCceeeeEEcCcceeeecccc-CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCC--------
Q psy17178 244 SKPAPFWQGTAVVDGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-------- 314 (384)
Q Consensus 244 g~~~P~f~l~~l~d~~g~~~~l~d~-~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~-------- 314 (384)
|+.+|+|++. +.+|+.++++++ +||++||+|| ++|||.|..+++.|++++++++++++.+++|+.|+
T Consensus 1 g~~~p~f~l~---~~~g~~v~l~~~~~~k~~ll~f~-~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~ 76 (171)
T cd02969 1 GSPAPDFSLP---DTDGKTYSLADFADGKALVVMFI-CNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDS 76 (171)
T ss_pred CCcCCCcccc---CCCCCEEeHHHHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccC
Confidence 5789999998 449999999998 8999999999 99999999999999999999998899999999865
Q ss_pred HHhHHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178 315 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE 378 (384)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~ 378 (384)
++..++|++++ +++|+++.|+++.+++.||+ ...|.+||||++|+|++...
T Consensus 77 ~~~~~~~~~~~-------~~~~~~l~D~~~~~~~~~~v------~~~P~~~lid~~G~v~~~~~ 127 (171)
T cd02969 77 PENMKAKAKEH-------GYPFPYLLDETQEVAKAYGA------ACTPDFFLFDPDGKLVYRGR 127 (171)
T ss_pred HHHHHHHHHHC-------CCCceEEECCchHHHHHcCC------CcCCcEEEECCCCeEEEeec
Confidence 56777777765 78899999999999999999 57789999999999998753
No 62
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.85 E-value=1.8e-21 Score=159.88 Aligned_cols=107 Identities=16% Similarity=0.153 Sum_probs=94.5
Q ss_pred cceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeC------CCHHhHHhhccCccccCCCCc
Q psy17178 70 LKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV------DSHFTHLAWVNTPRKEGGLGK 143 (384)
Q Consensus 70 g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~------d~~~~~~~~~~~~~~~~~~~~ 143 (384)
|++++|++++||++||+|| ++|||+|+.++|.|++++++++++++++++|+. ++++.+++|++. + +
T Consensus 13 ~~~v~l~~~~gk~vvl~F~-a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~---~----~ 84 (126)
T cd03012 13 DKPLSLAQLRGKVVLLDFW-TYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLR---Y----G 84 (126)
T ss_pred CCccCHHHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHH---c----C
Confidence 5789999999999999999 999999999999999999999989999999986 346677777774 3 8
Q ss_pred cceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccccccee
Q psy17178 144 LKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGA 195 (384)
Q Consensus 144 ~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~ 195 (384)
++||++.|+++++++.||+ ..+|++||||++|+|+....|.
T Consensus 85 ~~~p~~~D~~~~~~~~~~v-----------~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 85 ITYPVANDNDYATWRAYGN-----------QYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CCCCEEECCchHHHHHhCC-----------CcCCeEEEECCCCcEEEEEecC
Confidence 8999999999999999998 2346889999999999887764
No 63
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.85 E-value=3.1e-21 Score=163.99 Aligned_cols=119 Identities=14% Similarity=0.112 Sum_probs=95.6
Q ss_pred CCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeC--------CCHHhH
Q psy17178 247 APFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV--------DSHFTH 318 (384)
Q Consensus 247 ~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~--------d~~~~~ 318 (384)
+-+|+++ |.+|+++++++++||++||+|| ++|||+|..++|.|++++++|+++|+.|++|+. |+++.+
T Consensus 2 ~~~f~l~---~~~G~~~~l~~~~Gk~vvv~~~-as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~ 77 (153)
T TIGR02540 2 FYSFEVK---DARGRTVSLEKYRGKVSLVVNV-ASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEI 77 (153)
T ss_pred cccceeE---CCCCCEecHHHhCCCEEEEEEe-CCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHH
Confidence 3467887 5699999999999999999999 999999999999999999999999999999984 667888
Q ss_pred HHHhcC-ccccCCCCCcceeEEecC-----chHHHHHhCceecCCCceeeE----EEEEeCCceEEEEEec
Q psy17178 319 LAWVNT-PRKEGGLGKLKIPLLSDL-----THKISLDYGVYLSDQGHTLDK----YCLECYKMVIVYWFER 379 (384)
Q Consensus 319 ~~~~~~-~~~~~~~~~~~~~~~~D~-----~~~~~~~~gv~~~~~~~~~p~----~~lId~~G~i~~~~~~ 379 (384)
++|+++ + +++||++.|. +......|.+... ...|+ +||||++|+|++.+..
T Consensus 78 ~~f~~~~~-------~~~fp~~~d~~~~~~~~~~~~~~~~~~~---~~~p~~~~~tflID~~G~v~~~~~g 138 (153)
T TIGR02540 78 ESFARRNY-------GVTFPMFSKIKILGSEAEPAFRFLVDSS---KKEPRWNFWKYLVNPEGQVVKFWRP 138 (153)
T ss_pred HHHHHHhc-------CCCCCccceEecCCCCCCcHHHHHHhcC---CCCCCCccEEEEEcCCCcEEEEECC
Confidence 999874 5 7899999772 2222233433111 13455 9999999999998764
No 64
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.85 E-value=1.4e-20 Score=163.19 Aligned_cols=118 Identities=19% Similarity=0.231 Sum_probs=99.2
Q ss_pred CCCCCCCCCceeeeEEcCcce--eeecccc-CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC-CHH
Q psy17178 241 PFVSKPAPFWQGTAVVDGQLK--EIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD-SHF 316 (384)
Q Consensus 241 ~~~g~~~P~f~l~~l~d~~g~--~~~l~d~-~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d-~~~ 316 (384)
+.+|..+|+|+++++ +|+ .++++++ +||+++|+|| ++|||+|+.++|.++++++ +++++++|+.+ +.+
T Consensus 34 ~~vG~~ap~f~l~~~---~G~~~~~~~~~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~----~~~~vi~V~~~~~~~ 105 (173)
T TIGR00385 34 ALIGKPVPAFPLAAL---REPLQAYTPEAFIQGKPVLLNVW-ASWCPPCRAEHPYLNELAK----DGLPIVGVDYKDQSQ 105 (173)
T ss_pred hhcCCCCCCcccccc---CCCCcccCHHHhcCCCEEEEEEE-CCcCHHHHHHHHHHHHHHH----cCCEEEEEECCCChH
Confidence 468999999999955 665 6776776 7999999999 9999999999999987764 57999999985 445
Q ss_pred hHHHHhcCccccCCCCCccee-EEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178 317 THLAWVNTPRKEGGLGKLKIP-LLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER 379 (384)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~-~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~ 379 (384)
...+|++++ +++|+ ++.|+++.++++|++ ...|++|+||++|+|++.+..
T Consensus 106 ~~~~~~~~~-------~~~f~~v~~D~~~~~~~~~~v------~~~P~~~~id~~G~i~~~~~G 156 (173)
T TIGR00385 106 NALKFLKEL-------GNPYQAILIDPNGKLGLDLGV------YGAPETFLVDGNGVILYRHAG 156 (173)
T ss_pred HHHHHHHHc-------CCCCceEEECCCCchHHhcCC------eeCCeEEEEcCCceEEEEEec
Confidence 566787765 78887 568999999999999 578999999999999997763
No 65
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.85 E-value=2.3e-21 Score=164.75 Aligned_cols=128 Identities=10% Similarity=0.053 Sum_probs=98.9
Q ss_pred CccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeC--------CCHHhHH
Q psy17178 58 PFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV--------DSHFTHL 129 (384)
Q Consensus 58 P~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~--------d~~~~~~ 129 (384)
-+|++++. +|++++|++++||++||+|| ++|||+|..++|.|++++++|+++|+++++|+. |+.+.++
T Consensus 3 ~~f~l~~~---~G~~~~l~~~~Gk~vvv~~~-as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~ 78 (153)
T TIGR02540 3 YSFEVKDA---RGRTVSLEKYRGKVSLVVNV-ASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIE 78 (153)
T ss_pred ccceeECC---CCCEecHHHhCCCEEEEEEe-CCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHH
Confidence 46888776 99999999999999999999 999999999999999999999999999999994 5677888
Q ss_pred hhccCccccCCCCccceeEEeeC---cchhHHhhcCcccCCCCccccee-EEEEEEEecCCCcccccceeeee
Q psy17178 130 AWVNTPRKEGGLGKLKIPLLSDL---THKISLDYGVYLSDQGPVRGSLL-STAIFVYALTSPVNGYAGGALYS 198 (384)
Q Consensus 130 ~~~~~~~~~~~~~~~~~p~l~D~---~~~~~~~ygv~~~~~g~~~g~~~-~~~~~vid~~G~v~~~~~g~~~p 198 (384)
+|++. ++ +++||+++|. +......|+......+ +.+. .+++||||++|+|+....|...+
T Consensus 79 ~f~~~--~~----~~~fp~~~d~~~~~~~~~~~~~~~~~~~~---~~p~~~~~tflID~~G~v~~~~~g~~~~ 142 (153)
T TIGR02540 79 SFARR--NY----GVTFPMFSKIKILGSEAEPAFRFLVDSSK---KEPRWNFWKYLVNPEGQVVKFWRPEEPV 142 (153)
T ss_pred HHHHH--hc----CCCCCccceEecCCCCCCcHHHHHHhcCC---CCCCCccEEEEEcCCCcEEEEECCCCCH
Confidence 88863 12 7899999873 2333333332211101 1111 34689999999999888887643
No 66
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.84 E-value=1.7e-20 Score=157.22 Aligned_cols=122 Identities=20% Similarity=0.224 Sum_probs=105.0
Q ss_pred CCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcC-chHhHHHHHHHHHHHHhCC---cEEEEEeCCC----HHh
Q psy17178 246 PAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFV-CPTEILAFNDRLEEFHQIN---TEVVAASVDS----HFT 317 (384)
Q Consensus 246 ~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~-C~~~~~~l~~l~~~~~~~~---v~vv~Is~d~----~~~ 317 (384)
.+|+|++. |.+|+++++++++||++||+|| ++||+. |..+++.|+++++++++.+ +++++||.|+ ++.
T Consensus 1 ~~p~f~l~---~~~g~~~~l~~~~gk~~vl~f~-~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~ 76 (142)
T cd02968 1 IGPDFTLT---DQDGRPVTLSDLKGKPVLVYFG-YTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEV 76 (142)
T ss_pred CCCceEEE---cCCCCEEchHHhCCCEEEEEEE-cCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHH
Confidence 37999998 5599999999999999999999 899997 9999999999999998864 9999999854 577
Q ss_pred HHHHhcCccccCCCCCcceeEEecCc---hHHHHHhCceecCCC--------ceeeEEEEEeCCceEEEEEe
Q psy17178 318 HLAWVNTPRKEGGLGKLKIPLLSDLT---HKISLDYGVYLSDQG--------HTLDKYCLECYKMVIVYWFE 378 (384)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~D~~---~~~~~~~gv~~~~~~--------~~~p~~~lId~~G~i~~~~~ 378 (384)
+++|++++ +.+|+++.|++ +.++++||+...+.. .+.|.+||||++|+|+++|+
T Consensus 77 ~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~ 141 (142)
T cd02968 77 LKAYAKAF-------GPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYYG 141 (142)
T ss_pred HHHHHHHh-------CCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEeec
Confidence 88888876 78999999875 789999998765321 24678999999999999876
No 67
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.84 E-value=5.4e-20 Score=161.58 Aligned_cols=115 Identities=16% Similarity=0.107 Sum_probs=99.7
Q ss_pred CCCCCCCCCceeeeEEcCcceeeecc--ccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhH
Q psy17178 241 PFVSKPAPFWQGTAVVDGQLKEIKLS--DYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH 318 (384)
Q Consensus 241 ~~~g~~~P~f~l~~l~d~~g~~~~l~--d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~ 318 (384)
+.+|+.+|+|++++ .+|+.++++ +++||+++|+|| ++|||+|+.++|.+++++++ .++.+++||.|+++++
T Consensus 46 ~~vG~~aP~f~l~d---~~G~~v~l~~~~~~gk~vvl~F~-atwCp~C~~~lp~l~~~~~~---~~~~vv~Is~~~~~~~ 118 (189)
T TIGR02661 46 PDVGDAAPIFNLPD---FDGEPVRIGGSIAPGRPTLLMFT-APSCPVCDKLFPIIKSIARA---EETDVVMISDGTPAEH 118 (189)
T ss_pred CCCCCcCCCcEecC---CCCCEEeccchhcCCCEEEEEEE-CCCChhHHHHHHHHHHHHHh---cCCcEEEEeCCCHHHH
Confidence 46899999999994 499999994 579999999999 99999999999999998864 3688999999999999
Q ss_pred HHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEE
Q psy17178 319 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYW 376 (384)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~ 376 (384)
++|++++ +++++.+. .++++.+.||+ ...|++|+||++|+|++.
T Consensus 119 ~~~~~~~-------~~~~~~~~-~~~~i~~~y~v------~~~P~~~lID~~G~I~~~ 162 (189)
T TIGR02661 119 RRFLKDH-------ELGGERYV-VSAEIGMAFQV------GKIPYGVLLDQDGKIRAK 162 (189)
T ss_pred HHHHHhc-------CCCcceee-chhHHHHhccC------CccceEEEECCCCeEEEc
Confidence 9999876 66666543 46789999998 678999999999999985
No 68
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.84 E-value=9.7e-21 Score=158.68 Aligned_cols=127 Identities=21% Similarity=0.218 Sum_probs=105.0
Q ss_pred CCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCC-chHHHHHHHHhHHHHHhCC---cEEEEEeCCC----HHh
Q psy17178 56 PAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFV-CPTEILAFNDRLEEFHQIN---TEVVAASVDS----HFT 127 (384)
Q Consensus 56 ~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~-C~~~~~~l~~~~~~~~~~~---v~vi~Vs~d~----~~~ 127 (384)
.+|+|++++. +|+++++++++||++||+|| ++||+. |..+++.|+++++++++++ +++++||.|+ ++.
T Consensus 1 ~~p~f~l~~~---~g~~~~l~~~~gk~~vl~f~-~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~ 76 (142)
T cd02968 1 IGPDFTLTDQ---DGRPVTLSDLKGKPVLVYFG-YTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEV 76 (142)
T ss_pred CCCceEEEcC---CCCEEchHHhCCCEEEEEEE-cCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHH
Confidence 4799999877 99999999999999999999 899997 9999999999999998865 9999999865 466
Q ss_pred HHhhccCccccCCCCccceeEEeeCc---chhHHhhcCcccCCCC---cccceeEEEEEEEecCCCcccccc
Q psy17178 128 HLAWVNTPRKEGGLGKLKIPLLSDLT---HKISLDYGVYLSDQGP---VRGSLLSTAIFVYALTSPVNGYAG 193 (384)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~p~l~D~~---~~~~~~ygv~~~~~g~---~~g~~~~~~~~vid~~G~v~~~~~ 193 (384)
+++|.+.+ +.+||++.|+. +.++++||+...+... ..+..+++.+||||++|+|+.+..
T Consensus 77 ~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~ 141 (142)
T cd02968 77 LKAYAKAF-------GPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYYG 141 (142)
T ss_pred HHHHHHHh-------CCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEeec
Confidence 77777743 67899999975 7899999997654211 123345688999999999987643
No 69
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.83 E-value=2.4e-20 Score=153.38 Aligned_cols=114 Identities=18% Similarity=0.192 Sum_probs=99.3
Q ss_pred CCCCceeeeEEcCcc--eeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeC-CCHHhHHHHh
Q psy17178 246 PAPFWQGTAVVDGQL--KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV-DSHFTHLAWV 322 (384)
Q Consensus 246 ~~P~f~l~~l~d~~g--~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~-d~~~~~~~~~ 322 (384)
.+|+|+++++ +| +.+++++++||++||+|| ++|||+|..++|.|+++.+++ +++|++|+. |+.+..++|+
T Consensus 2 ~~p~f~~~~~---~g~~~~~~~~~~~gk~vvv~F~-a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~~~~~~~~~~~ 74 (127)
T cd03010 2 PAPAFSLPAL---PGPDKTLTSADLKGKPYLLNVW-ASWCAPCREEHPVLMALARQG---RVPIYGINYKDNPENALAWL 74 (127)
T ss_pred CCCCcccccc---cCCCccccHHHcCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHhc---CcEEEEEECCCCHHHHHHHH
Confidence 5899999865 66 889999999999999999 999999999999999998765 599999997 5677888888
Q ss_pred cCccccCCCCCccee-EEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178 323 NTPRKEGGLGKLKIP-LLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER 379 (384)
Q Consensus 323 ~~~~~~~~~~~~~~~-~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~ 379 (384)
++. ++.|+ ++.|.++.+++.|++ ..+|++|+||++|+|++.+..
T Consensus 75 ~~~-------~~~~~~~~~D~~~~~~~~~~v------~~~P~~~~ld~~G~v~~~~~G 119 (127)
T cd03010 75 ARH-------GNPYAAVGFDPDGRVGIDLGV------YGVPETFLIDGDGIIRYKHVG 119 (127)
T ss_pred Hhc-------CCCCceEEECCcchHHHhcCC------CCCCeEEEECCCceEEEEEec
Confidence 775 66665 668999999999999 678999999999999997763
No 70
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.83 E-value=1.8e-20 Score=156.05 Aligned_cols=102 Identities=11% Similarity=0.104 Sum_probs=85.2
Q ss_pred eeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhC-------CcEEEEEeCCC-HHhHHHHhcCccccCCCC
Q psy17178 261 KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI-------NTEVVAASVDS-HFTHLAWVNTPRKEGGLG 332 (384)
Q Consensus 261 ~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~-------~v~vv~Is~d~-~~~~~~~~~~~~~~~~~~ 332 (384)
..+++++++||+++|+|| |+|||+|+.++|.|+++|++++++ ++.+|+||.|. .+..++|+++.
T Consensus 16 ~~~~ls~~kgk~vlL~Fw-AsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~------- 87 (146)
T cd03008 16 EREIVARLENRVLLLFFG-AVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDM------- 87 (146)
T ss_pred ccccHHHhCCCEEEEEEE-CCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHC-------
Confidence 357889999999999999 999999999999999999988753 69999999985 44567787765
Q ss_pred Cccee---EEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEE
Q psy17178 333 KLKIP---LLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYW 376 (384)
Q Consensus 333 ~~~~~---~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~ 376 (384)
+++|+ +..+.++.+++.||+ ..+|++||||++|+|+..
T Consensus 88 ~~~~~~~p~~~~~~~~l~~~y~v------~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 88 PKKWLFLPFEDEFRRELEAQFSV------EELPTVVVLKPDGDVLAA 128 (146)
T ss_pred CCCceeecccchHHHHHHHHcCC------CCCCEEEEECCCCcEEee
Confidence 55553 333334689999999 689999999999999974
No 71
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.83 E-value=5.7e-21 Score=167.33 Aligned_cols=124 Identities=18% Similarity=0.217 Sum_probs=102.7
Q ss_pred cccCCCCCCccEEEeeecCccceEEcccc-CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC-CHHh
Q psy17178 50 SKNLSKPAPFWQGTAVVDGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD-SHFT 127 (384)
Q Consensus 50 ~~~~G~~aP~f~l~~~~~~~g~~~~l~~~-~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d-~~~~ 127 (384)
...+|+++|+|+++++ +++|+.++++++ +||++||+|| ++|||+|+.++|.|+++++ +|+++++|+.| +.+.
T Consensus 38 ~~~~g~~~p~f~l~~~-~g~g~~~~~~~~~~gk~vvv~Fw-atwC~~C~~e~p~l~~l~~----~~~~vi~v~~~~~~~~ 111 (185)
T PRK15412 38 SALIGKPVPKFRLESL-ENPGQFYQADVLTQGKPVLLNVW-ATWCPTCRAEHQYLNQLSA----QGIRVVGMNYKDDRQK 111 (185)
T ss_pred hhhcCCCCCCcCCccC-CCCCccccHHHhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHH----cCCEEEEEECCCCHHH
Confidence 3568999999999887 333677888776 7999999999 9999999999999987753 58999999975 4677
Q ss_pred HHhhccCccccCCCCccceeE-EeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeee
Q psy17178 128 HLAWVNTPRKEGGLGKLKIPL-LSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALY 197 (384)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~p~-l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~ 197 (384)
+++|.++. +++||+ +.|.++.++++||+ ...|.+|+||++|+|+....|.+.
T Consensus 112 ~~~~~~~~-------~~~~~~~~~D~~~~~~~~~gv-----------~~~P~t~vid~~G~i~~~~~G~~~ 164 (185)
T PRK15412 112 AISWLKEL-------GNPYALSLFDGDGMLGLDLGV-----------YGAPETFLIDGNGIIRYRHAGDLN 164 (185)
T ss_pred HHHHHHHc-------CCCCceEEEcCCccHHHhcCC-----------CcCCeEEEECCCceEEEEEecCCC
Confidence 88888753 778984 78999999999998 234678999999999988888763
No 72
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.83 E-value=6.3e-20 Score=147.82 Aligned_cols=109 Identities=18% Similarity=0.166 Sum_probs=94.5
Q ss_pred CCceeeeEEcCcceeeeccccC-CCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCcc
Q psy17178 248 PFWQGTAVVDGQLKEIKLSDYY-GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPR 326 (384)
Q Consensus 248 P~f~l~~l~d~~g~~~~l~d~~-Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~ 326 (384)
|+|+++ |.+|+.+++++++ ||++||+|| ++||++|+.++|.+++++++++ .++.+++++.++.+..++|++++
T Consensus 1 p~f~l~---~~~G~~~~l~~~~~gk~vvl~F~-~~wC~~C~~~~p~l~~~~~~~~-~~~~vi~v~~~~~~~~~~~~~~~- 74 (114)
T cd02967 1 PTFDLT---TIDGAPVRIGGISPGRPTLLFFL-SPTCPVCKKLLPVIRSIARAEA-DWLDVVLASDGEKAEHQRFLKKH- 74 (114)
T ss_pred CCceee---cCCCCEEEcccccCCCeEEEEEE-CCCCcchHhHhHHHHHHHHHhc-CCcEEEEEeCCCHHHHHHHHHHh-
Confidence 788888 4599999999997 999999999 9999999999999999988875 46888988877788888898876
Q ss_pred ccCCCCCc-ceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEE
Q psy17178 327 KEGGLGKL-KIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYW 376 (384)
Q Consensus 327 ~~~~~~~~-~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~ 376 (384)
++ .+|++.+ +.+.+.|++ ...|++|+||++|+|++.
T Consensus 75 ------~~~~~p~~~~--~~~~~~~~~------~~~P~~~vid~~G~v~~~ 111 (114)
T cd02967 75 ------GLEAFPYVLS--AELGMAYQV------SKLPYAVLLDEAGVIAAK 111 (114)
T ss_pred ------CCCCCcEEec--HHHHhhcCC------CCcCeEEEECCCCeEEec
Confidence 56 4888774 568899998 578999999999999983
No 73
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.83 E-value=2.4e-20 Score=161.56 Aligned_cols=115 Identities=21% Similarity=0.237 Sum_probs=101.1
Q ss_pred CCCCCccEEEeeecCccceEEcccc-CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC--------
Q psy17178 54 SKPAPFWQGTAVVDGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-------- 124 (384)
Q Consensus 54 G~~aP~f~l~~~~~~~g~~~~l~~~-~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~-------- 124 (384)
|+++|+|++.+. +|++++|+++ +||++||+|| ++|||.|..+++.|.+++++|+++++.+++|+.|+
T Consensus 1 g~~~p~f~l~~~---~g~~v~l~~~~~~k~~ll~f~-~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~ 76 (171)
T cd02969 1 GSPAPDFSLPDT---DGKTYSLADFADGKALVVMFI-CNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDS 76 (171)
T ss_pred CCcCCCccccCC---CCCEEeHHHHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccC
Confidence 688999999877 8999999999 8899999999 99999999999999999999998899999999975
Q ss_pred HHhHHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccc
Q psy17178 125 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNG 190 (384)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~ 190 (384)
++..++|.+. + +++||++.|.++.+++.||+. ..|.++|||++|+|+.
T Consensus 77 ~~~~~~~~~~---~----~~~~~~l~D~~~~~~~~~~v~-----------~~P~~~lid~~G~v~~ 124 (171)
T cd02969 77 PENMKAKAKE---H----GYPFPYLLDETQEVAKAYGAA-----------CTPDFFLFDPDGKLVY 124 (171)
T ss_pred HHHHHHHHHH---C----CCCceEEECCchHHHHHcCCC-----------cCCcEEEECCCCeEEE
Confidence 4555666653 3 788999999999999999993 2357899999999973
No 74
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.82 E-value=4.5e-20 Score=161.34 Aligned_cols=126 Identities=11% Similarity=0.084 Sum_probs=94.5
Q ss_pred CCCCCCCceeeeEEcCcceeeeccccCCCeEE-EEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC--------
Q psy17178 243 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLV-FFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD-------- 313 (384)
Q Consensus 243 ~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vv-l~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d-------- 313 (384)
.+..+|+|++++ .+|+.+++++++||++| +.+| ++|||+|..|+|.|++++++|+++|+.|++||.|
T Consensus 16 ~~~~~p~f~l~d---~~G~~vsLs~~~Gk~vvlv~n~-atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~ 91 (183)
T PTZ00256 16 PTKSFFEFEAID---IDGQLVQLSKFKGKKAIIVVNV-ACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPW 91 (183)
T ss_pred CCCcccceEeEc---CCCCEEeHHHhCCCcEEEEEEE-CCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCC
Confidence 457899999984 49999999999999654 4557 9999999999999999999999999999999964
Q ss_pred CHHhHHHHhc-CccccCCCCCcceeEEec--CchHH-HHHhCceecC--------CC-ceee---EEEEEeCCceEEEEE
Q psy17178 314 SHFTHLAWVN-TPRKEGGLGKLKIPLLSD--LTHKI-SLDYGVYLSD--------QG-HTLD---KYCLECYKMVIVYWF 377 (384)
Q Consensus 314 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~D--~~~~~-~~~~gv~~~~--------~~-~~~p---~~~lId~~G~i~~~~ 377 (384)
+.+...+|.+ ++ +++||++.| .++.. .+.|+..... .+ ...| ++||||++|+|++++
T Consensus 92 ~~~~~~~f~~~~~-------~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~ 164 (183)
T PTZ00256 92 DEPEIKEYVQKKF-------NVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYF 164 (183)
T ss_pred CHHHHHHHHHHhc-------CCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEE
Confidence 2356666654 44 789999965 44332 2334211000 01 2445 579999999999987
Q ss_pred ec
Q psy17178 378 ER 379 (384)
Q Consensus 378 ~~ 379 (384)
..
T Consensus 165 ~g 166 (183)
T PTZ00256 165 SP 166 (183)
T ss_pred CC
Confidence 63
No 75
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.82 E-value=2.4e-20 Score=153.34 Aligned_cols=118 Identities=19% Similarity=0.227 Sum_probs=99.9
Q ss_pred CCCCccEEEeeecCcc--ceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeC-CCHHhHHhh
Q psy17178 55 KPAPFWQGTAVVDGQL--KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV-DSHFTHLAW 131 (384)
Q Consensus 55 ~~aP~f~l~~~~~~~g--~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~-d~~~~~~~~ 131 (384)
+++|+|++++. +| +.+++++++||++||+|| ++|||+|+.++|.++++.+++ ++++++|+. ++.+.+++|
T Consensus 1 ~~~p~f~~~~~---~g~~~~~~~~~~~gk~vvv~F~-a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~~~~~~~~~~ 73 (127)
T cd03010 1 KPAPAFSLPAL---PGPDKTLTSADLKGKPYLLNVW-ASWCAPCREEHPVLMALARQG---RVPIYGINYKDNPENALAW 73 (127)
T ss_pred CCCCCcccccc---cCCCccccHHHcCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHhc---CcEEEEEECCCCHHHHHHH
Confidence 46899999887 65 889999999999999999 999999999999999987764 599999997 457788888
Q ss_pred ccCccccCCCCcccee-EEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeee
Q psy17178 132 VNTPRKEGGLGKLKIP-LLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALY 197 (384)
Q Consensus 132 ~~~~~~~~~~~~~~~p-~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~ 197 (384)
.+.. +++|+ ++.|..+++++.||+. ..|++|+||++|+|+....|.+.
T Consensus 74 ~~~~-------~~~~~~~~~D~~~~~~~~~~v~-----------~~P~~~~ld~~G~v~~~~~G~~~ 122 (127)
T cd03010 74 LARH-------GNPYAAVGFDPDGRVGIDLGVY-----------GVPETFLIDGDGIIRYKHVGPLT 122 (127)
T ss_pred HHhc-------CCCCceEEECCcchHHHhcCCC-----------CCCeEEEECCCceEEEEEeccCC
Confidence 7643 66775 6689999999999992 24678999999999988888763
No 76
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.81 E-value=1.1e-19 Score=157.50 Aligned_cols=127 Identities=23% Similarity=0.308 Sum_probs=111.4
Q ss_pred cccccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC-HH
Q psy17178 48 FYSKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-HF 126 (384)
Q Consensus 48 ~~~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~-~~ 126 (384)
...+.+|+.+|+|++.+. +|+.+++++++||+++|+|| ++|||.|+.+++.|+++++++++.++++++|+.|. .+
T Consensus 32 ~~~~~~g~~~p~~~~~~~---~g~~~~l~~~~~k~~~l~f~-a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~ 107 (173)
T PRK03147 32 KEKVQVGKEAPNFVLTDL---EGKKIELKDLKGKGVFLNFW-GTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETEL 107 (173)
T ss_pred ccccCCCCCCCCcEeecC---CCCEEeHHHcCCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHH
Confidence 456789999999999877 89999999999999999999 99999999999999999999998889999999976 56
Q ss_pred hHHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178 127 THLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL 196 (384)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~ 196 (384)
..++|.+.+ +++||++.|.++++.++||+. ..|++|++|++|+|+....|..
T Consensus 108 ~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~v~-----------~~P~~~lid~~g~i~~~~~g~~ 159 (173)
T PRK03147 108 AVKNFVNRY-------GLTFPVAIDKGRQVIDAYGVG-----------PLPTTFLIDKDGKVVKVITGEM 159 (173)
T ss_pred HHHHHHHHh-------CCCceEEECCcchHHHHcCCC-----------CcCeEEEECCCCcEEEEEeCCC
Confidence 677777643 789999999999999999982 2467899999999987666654
No 77
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.81 E-value=1.2e-19 Score=159.39 Aligned_cols=116 Identities=12% Similarity=0.126 Sum_probs=97.7
Q ss_pred ccccCCCCCCccEEEeeecCccceEEcc--ccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHH
Q psy17178 49 YSKNLSKPAPFWQGTAVVDGQLKEIKLS--DYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHF 126 (384)
Q Consensus 49 ~~~~~G~~aP~f~l~~~~~~~g~~~~l~--~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~ 126 (384)
.++.+|+++|+|++++. +|+.++++ +++||+++|+|| ++|||+|+.++|.+++++++ .++.+++|+.|+++
T Consensus 44 ~~~~vG~~aP~f~l~d~---~G~~v~l~~~~~~gk~vvl~F~-atwCp~C~~~lp~l~~~~~~---~~~~vv~Is~~~~~ 116 (189)
T TIGR02661 44 HGPDVGDAAPIFNLPDF---DGEPVRIGGSIAPGRPTLLMFT-APSCPVCDKLFPIIKSIARA---EETDVVMISDGTPA 116 (189)
T ss_pred cCCCCCCcCCCcEecCC---CCCEEeccchhcCCCEEEEEEE-CCCChhHHHHHHHHHHHHHh---cCCcEEEEeCCCHH
Confidence 35689999999999887 99999995 579999999999 99999999999999998764 47889999988888
Q ss_pred hHHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccc
Q psy17178 127 THLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNG 190 (384)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~ 190 (384)
.+++|.++. +++++.+. .++++++.||+. ..|++|+||++|+|++
T Consensus 117 ~~~~~~~~~-------~~~~~~~~-~~~~i~~~y~v~-----------~~P~~~lID~~G~I~~ 161 (189)
T TIGR02661 117 EHRRFLKDH-------ELGGERYV-VSAEIGMAFQVG-----------KIPYGVLLDQDGKIRA 161 (189)
T ss_pred HHHHHHHhc-------CCCcceee-chhHHHHhccCC-----------ccceEEEECCCCeEEE
Confidence 999998853 66776554 468899999982 2467799999999985
No 78
>KOG0854|consensus
Probab=99.80 E-value=1.5e-19 Score=148.73 Aligned_cols=152 Identities=24% Similarity=0.407 Sum_probs=128.9
Q ss_pred cccCCCCCCccEEEeeecCccceEEccccCCC-eEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhH
Q psy17178 50 SKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH 128 (384)
Q Consensus 50 ~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk-~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~ 128 (384)
.+.+|+.+|+|+..+. -.++.+.||.|. |+||+-.|+.++|+|.+|+.++.++..+|..+|+..|+.|+|+.+++
T Consensus 5 ~l~lgd~~PNfea~Tt----~g~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~vesH 80 (224)
T KOG0854|consen 5 RLRLGDTVPNFEADTT----VGKIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDDVESH 80 (224)
T ss_pred cccccCcCCCcccccc----ccceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhhHHHH
Confidence 4568999999997654 357999999885 99999999999999999999999999999999999999999999999
Q ss_pred HhhccCccccCCCC--ccceeEEeeCcchhHHhhcCcccCCCCcccc-eeEEEEEEEecCCCcccccceeeeeccCCccc
Q psy17178 129 LAWVNTPRKEGGLG--KLKIPLLSDLTHKISLDYGVYLSDQGPVRGS-LLSTAIFVYALTSPVNGYAGGALYSRLGGRAW 205 (384)
Q Consensus 129 ~~~~~~~~~~~~~~--~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~-~~~~~~~vid~~G~v~~~~~g~~~p~~~g~~w 205 (384)
++|.++++.+.... .++||++.|+..+++-.|+....++-...|. ...|++||||++-+| ++..+||..+|||.
T Consensus 81 ~~Wi~DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKi---rLs~lYP~ttGRN~ 157 (224)
T KOG0854|consen 81 KDWIKDIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKI---RLSFLYPSTTGRNF 157 (224)
T ss_pred HHHHHHHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceE---EEEEEcccccCcCH
Confidence 99998874443222 3899999999999999999987664222222 556999999999988 68999999999996
Q ss_pred eee
Q psy17178 206 IRH 208 (384)
Q Consensus 206 k~~ 208 (384)
-..
T Consensus 158 dEi 160 (224)
T KOG0854|consen 158 DEI 160 (224)
T ss_pred HHH
Confidence 543
No 79
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.80 E-value=9e-20 Score=158.11 Aligned_cols=121 Identities=18% Similarity=0.225 Sum_probs=99.3
Q ss_pred cccCCCCCCccEEEeeecCccc--eEEcccc-CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC-H
Q psy17178 50 SKNLSKPAPFWQGTAVVDGQLK--EIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-H 125 (384)
Q Consensus 50 ~~~~G~~aP~f~l~~~~~~~g~--~~~l~~~-~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~-~ 125 (384)
...+|+++|+|++++. +|+ +++++++ +||+++|+|| ++|||+|+.++|.++++++ +|+++++|+.++ .
T Consensus 33 ~~~vG~~ap~f~l~~~---~G~~~~~~~~~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~----~~~~vi~V~~~~~~ 104 (173)
T TIGR00385 33 SALIGKPVPAFPLAAL---REPLQAYTPEAFIQGKPVLLNVW-ASWCPPCRAEHPYLNELAK----DGLPIVGVDYKDQS 104 (173)
T ss_pred chhcCCCCCCcccccc---CCCCcccCHHHhcCCCEEEEEEE-CCcCHHHHHHHHHHHHHHH----cCCEEEEEECCCCh
Confidence 3468999999999876 665 6666776 7899999999 9999999999999987654 579999999854 5
Q ss_pred HhHHhhccCccccCCCCcccee-EEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178 126 FTHLAWVNTPRKEGGLGKLKIP-LLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL 196 (384)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~p-~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~ 196 (384)
+...+|.+.. +++|| ++.|+.++++++|++ ...|++|+||++|+|+....|.+
T Consensus 105 ~~~~~~~~~~-------~~~f~~v~~D~~~~~~~~~~v-----------~~~P~~~~id~~G~i~~~~~G~~ 158 (173)
T TIGR00385 105 QNALKFLKEL-------GNPYQAILIDPNGKLGLDLGV-----------YGAPETFLVDGNGVILYRHAGPL 158 (173)
T ss_pred HHHHHHHHHc-------CCCCceEEECCCCchHHhcCC-----------eeCCeEEEEcCCceEEEEEeccC
Confidence 5566777643 77897 568999999999998 22467899999999998888865
No 80
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.80 E-value=3.4e-19 Score=143.56 Aligned_cols=108 Identities=15% Similarity=0.193 Sum_probs=91.5
Q ss_pred CccEEEeeecCccceEEccccC-CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCcc
Q psy17178 58 PFWQGTAVVDGQLKEIKLSDYY-GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPR 136 (384)
Q Consensus 58 P~f~l~~~~~~~g~~~~l~~~~-gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~ 136 (384)
|+|++++. +|+.++|++++ ||++||+|| ++|||+|+.++|.+++++++++ .++.+++|+.++.+..++|++.+
T Consensus 1 p~f~l~~~---~G~~~~l~~~~~gk~vvl~F~-~~wC~~C~~~~p~l~~~~~~~~-~~~~vi~v~~~~~~~~~~~~~~~- 74 (114)
T cd02967 1 PTFDLTTI---DGAPVRIGGISPGRPTLLFFL-SPTCPVCKKLLPVIRSIARAEA-DWLDVVLASDGEKAEHQRFLKKH- 74 (114)
T ss_pred CCceeecC---CCCEEEcccccCCCeEEEEEE-CCCCcchHhHhHHHHHHHHHhc-CCcEEEEEeCCCHHHHHHHHHHh-
Confidence 78999877 89999999997 999999999 9999999999999999988875 46888988877788888888854
Q ss_pred ccCCCCcc-ceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccc
Q psy17178 137 KEGGLGKL-KIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNG 190 (384)
Q Consensus 137 ~~~~~~~~-~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~ 190 (384)
++ .+|++.+ ++++++||+ ...|++|+||++|+|++
T Consensus 75 ------~~~~~p~~~~--~~~~~~~~~-----------~~~P~~~vid~~G~v~~ 110 (114)
T cd02967 75 ------GLEAFPYVLS--AELGMAYQV-----------SKLPYAVLLDEAGVIAA 110 (114)
T ss_pred ------CCCCCcEEec--HHHHhhcCC-----------CCcCeEEEECCCCeEEe
Confidence 56 4888874 468888998 23578899999999974
No 81
>KOG0855|consensus
Probab=99.80 E-value=2.4e-19 Score=146.28 Aligned_cols=133 Identities=23% Similarity=0.326 Sum_probs=117.4
Q ss_pred cccCCCCCCccEEEeeecCccceEEccccCCC-eEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhH
Q psy17178 50 SKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH 128 (384)
Q Consensus 50 ~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk-~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~ 128 (384)
.+++|+.+|||+|++- +|++++|.++.|+ +||++|||++-+|.|.++.+.|.+-|++++..+.+|+|+|.|+...+
T Consensus 62 ~v~~Gd~iPD~tL~de---dg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D~s~sq 138 (211)
T KOG0855|consen 62 KVNKGDAIPDFTLKDE---DGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGDDSASQ 138 (211)
T ss_pred eeecCCcCCCcccccC---CCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccCchHHH
Confidence 6779999999999655 9999999999985 99999999999999999999999999999999999999999999999
Q ss_pred HhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178 129 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL 196 (384)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~ 196 (384)
++|... + +++|.+|+|+.+++.+.+|+..++ .|....|+.||+|..|....+..-.+
T Consensus 139 KaF~sK---q----nlPYhLLSDpk~e~ik~lGa~k~p----~gg~~~Rsh~if~kg~~k~~ik~~~i 195 (211)
T KOG0855|consen 139 KAFASK---Q----NLPYHLLSDPKNEVIKDLGAPKDP----FGGLPGRSHYIFDKGGVKQLIKNNQI 195 (211)
T ss_pred HHhhhh---c----cCCeeeecCcchhHHHHhCCCCCC----CCCcccceEEEEecCCeEEEEEeccc
Confidence 999874 3 899999999999999999997665 34566788999999987765544433
No 82
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.80 E-value=1.1e-18 Score=172.47 Aligned_cols=120 Identities=10% Similarity=0.151 Sum_probs=102.5
Q ss_pred CCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC------C
Q psy17178 241 PFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD------S 314 (384)
Q Consensus 241 ~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d------~ 314 (384)
...++.+|+|++. |.+|+.++++ +||++||+|| |+||++|+.++|.|++++++++.++++||+|+.+ +
T Consensus 32 ~~~~~~lP~f~l~---D~dG~~v~ls--kGKpVvV~FW-ATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~ 105 (521)
T PRK14018 32 ATVPHTLSTLKTA---DNRPASVYLK--KDKPTLIKFW-ASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKK 105 (521)
T ss_pred ccccCCCCCeEee---cCCCceeecc--CCCEEEEEEE-cCCCHHHHHHHHHHHHHHHHhccCCeEEEEEeccccccccc
Confidence 3456789999998 5599999997 8999999999 9999999999999999999998788999999863 2
Q ss_pred HHhHHHHhcCccccCCCCCc-ceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178 315 HFTHLAWVNTPRKEGGLGKL-KIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER 379 (384)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~-~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~ 379 (384)
.+..++|.+.+ ++ ++|++.|.++.+++.|++ ..+|+++|||++|+|+..+..
T Consensus 106 ~~~~~~~~~~~-------~y~~~pV~~D~~~~lak~fgV------~giPTt~IIDkdGkIV~~~~G 158 (521)
T PRK14018 106 DGDFQKWYAGL-------DYPKLPVLTDNGGTLAQSLNI------SVYPSWAIIGKDGDVQRIVKG 158 (521)
T ss_pred HHHHHHHHHhC-------CCcccceeccccHHHHHHcCC------CCcCeEEEEcCCCeEEEEEeC
Confidence 34455565543 33 689999999999999999 789999999999999997653
No 83
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.79 E-value=1.8e-19 Score=150.03 Aligned_cols=101 Identities=13% Similarity=0.166 Sum_probs=81.5
Q ss_pred ceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhC-------CcEEEEEeCCC-HHhHHhhccCccccCCCC
Q psy17178 71 KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI-------NTEVVAASVDS-HFTHLAWVNTPRKEGGLG 142 (384)
Q Consensus 71 ~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~-------~v~vi~Vs~d~-~~~~~~~~~~~~~~~~~~ 142 (384)
+.++|++++||+++|+|| |+|||+|+.++|.|.+++++++++ ++++|+||.|. .+..++|.+.+
T Consensus 16 ~~~~ls~~kgk~vlL~Fw-AsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~------- 87 (146)
T cd03008 16 EREIVARLENRVLLLFFG-AVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDM------- 87 (146)
T ss_pred ccccHHHhCCCEEEEEEE-CCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHC-------
Confidence 467999999999999999 999999999999999999988753 69999999986 44567777643
Q ss_pred ccce---eEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccc
Q psy17178 143 KLKI---PLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNG 190 (384)
Q Consensus 143 ~~~~---p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~ 190 (384)
+++| |+..+..+.+++.||+ ...|++||||++|+|+.
T Consensus 88 ~~~~~~~p~~~~~~~~l~~~y~v-----------~~iPt~vlId~~G~Vv~ 127 (146)
T cd03008 88 PKKWLFLPFEDEFRRELEAQFSV-----------EELPTVVVLKPDGDVLA 127 (146)
T ss_pred CCCceeecccchHHHHHHHHcCC-----------CCCCEEEEECCCCcEEe
Confidence 5555 3333434689999998 23467889999999973
No 84
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.78 E-value=2e-18 Score=138.08 Aligned_cols=112 Identities=23% Similarity=0.278 Sum_probs=102.2
Q ss_pred ceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCC--HHhHHHHhcCccc
Q psy17178 250 WQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS--HFTHLAWVNTPRK 327 (384)
Q Consensus 250 f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~--~~~~~~~~~~~~~ 327 (384)
|.+. +.+|+.+++++++||+++|+|| ++||+.|...++.|.++.+++++.++.+++|+.|+ ++..+++.+++
T Consensus 2 ~~~~---~~~g~~~~~~~~~~k~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~-- 75 (116)
T cd02966 2 FSLP---DLDGKPVSLSDLKGKVVLVNFW-ASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKY-- 75 (116)
T ss_pred cccc---CCCCCEeehHHcCCCEEEEEee-cccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHc--
Confidence 5555 4599999999999999999999 99999999999999999999987889999999997 88999999887
Q ss_pred cCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178 328 EGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE 378 (384)
Q Consensus 328 ~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~ 378 (384)
+.+++++.|....+.+.||+ ...|+++|+|++|+|++.+.
T Consensus 76 -----~~~~~~~~~~~~~~~~~~~~------~~~P~~~l~d~~g~v~~~~~ 115 (116)
T cd02966 76 -----GITFPVLLDPDGELAKAYGV------RGLPTTFLIDRDGRIRARHV 115 (116)
T ss_pred -----CCCcceEEcCcchHHHhcCc------CccceEEEECCCCcEEEEec
Confidence 78999999999999999999 68899999999999998764
No 85
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.77 E-value=2.6e-18 Score=147.98 Aligned_cols=125 Identities=14% Similarity=0.057 Sum_probs=94.9
Q ss_pred CCCCCCCCceeee----EE---cCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEE------E
Q psy17178 242 FVSKPAPFWQGTA----VV---DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEV------V 308 (384)
Q Consensus 242 ~~g~~~P~f~l~~----l~---d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~v------v 308 (384)
.+|+.+|.....+ +. +-+.++++.++++||+.||+|| |+||++|+.|+|.|.++ +++|+.+ +
T Consensus 24 ~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~-Aswc~~c~~e~P~l~~l----~~~~~~~~~y~~t~ 98 (184)
T TIGR01626 24 QVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHI-AGRTSAKEXNASLIDAI----KAAKFPPVKYQTTT 98 (184)
T ss_pred hcCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEE-ecCCChhhccchHHHHH----HHcCCCcccccceE
Confidence 5677787776542 00 1145678899999999999999 99999999999999999 4467888 9
Q ss_pred EEeCCC-HHhHHHHhcCccccCCCCCccee---EEecCchHHHHHhCceecCCCceeeEE-EEEeCCceEEEEEecC
Q psy17178 309 AASVDS-HFTHLAWVNTPRKEGGLGKLKIP---LLSDLTHKISLDYGVYLSDQGHTLDKY-CLECYKMVIVYWFERG 380 (384)
Q Consensus 309 ~Is~d~-~~~~~~~~~~~~~~~~~~~~~~~---~~~D~~~~~~~~~gv~~~~~~~~~p~~-~lId~~G~i~~~~~~~ 380 (384)
+||.|+ ......|.+.+.+.. +..|| ++.|+++.+..+||+ ...|++ ||||++|+|++.+..+
T Consensus 99 ~IN~dd~~~~~~~fVk~fie~~---~~~~P~~~vllD~~g~v~~~~gv------~~~P~T~fVIDk~GkVv~~~~G~ 166 (184)
T TIGR01626 99 IINADDAIVGTGMFVKSSAKKG---KKENPWSQVVLDDKGAVKNAWQL------NSEDSAIIVLDKTGKVKFVKEGA 166 (184)
T ss_pred EEECccchhhHHHHHHHHHHHh---cccCCcceEEECCcchHHHhcCC------CCCCceEEEECCCCcEEEEEeCC
Confidence 999985 333344443222211 45555 999999999999999 678777 8999999999977753
No 86
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.77 E-value=2.7e-18 Score=142.13 Aligned_cols=105 Identities=16% Similarity=0.156 Sum_probs=86.7
Q ss_pred cCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhC--CcEEEEEeCCC-HHhHHHHhcCccccCCCCC
Q psy17178 257 DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI--NTEVVAASVDS-HFTHLAWVNTPRKEGGLGK 333 (384)
Q Consensus 257 d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~--~v~vv~Is~d~-~~~~~~~~~~~~~~~~~~~ 333 (384)
|++ +++++++++||+++|+|| ++||++|+.++|.|++++++++++ +++|++|+.|. ++..++|++++ +
T Consensus 5 ~~~-~~v~l~~~~Gk~vll~F~-atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~-------~ 75 (132)
T cd02964 5 DGE-GVVPVSALEGKTVGLYFS-ASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEM-------P 75 (132)
T ss_pred cCC-ccccHHHhCCCEEEEEEE-CCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcC-------C
Confidence 555 699999999999999999 999999999999999999999875 79999999985 45777888765 3
Q ss_pred cceeEE--ec--CchHHHHHhCceecCCCceeeEEEEEeCCceEEEEE
Q psy17178 334 LKIPLL--SD--LTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWF 377 (384)
Q Consensus 334 ~~~~~~--~D--~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~ 377 (384)
.+..+ .| ..+.+.+.|++ ..+|+++|||++|+|++..
T Consensus 76 -~~~~~~~~d~~~~~~~~~~~~v------~~iPt~~lid~~G~iv~~~ 116 (132)
T cd02964 76 -PWLAVPFEDEELRELLEKQFKV------EGIPTLVVLKPDGDVVTTN 116 (132)
T ss_pred -CeEeeccCcHHHHHHHHHHcCC------CCCCEEEEECCCCCEEchh
Confidence 33332 23 23577888999 6899999999999999754
No 87
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.76 E-value=1.7e-18 Score=143.17 Aligned_cols=108 Identities=13% Similarity=0.140 Sum_probs=86.5
Q ss_pred cCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhC--CcEEEEEeCCCH-HhHHHHhcCccccCCCCC
Q psy17178 257 DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI--NTEVVAASVDSH-FTHLAWVNTPRKEGGLGK 333 (384)
Q Consensus 257 d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~--~v~vv~Is~d~~-~~~~~~~~~~~~~~~~~~ 333 (384)
|.+|+.+++++++||++||+|| ++||++|+.++|.|+++++++++. +++|++||.|.. +..+++.+... .
T Consensus 5 ~~~G~~v~l~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~------~ 77 (131)
T cd03009 5 RNDGGKVPVSSLEGKTVGLYFS-ASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMP------W 77 (131)
T ss_pred ccCCCCccHHHhCCcEEEEEEE-CCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCC------e
Confidence 6699999999999999999999 999999999999999999999865 799999999854 34445544321 1
Q ss_pred cceeEE-ecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEE
Q psy17178 334 LKIPLL-SDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWF 377 (384)
Q Consensus 334 ~~~~~~-~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~ 377 (384)
..+++. .|....+.++||+ ...|+++|||++|+|+...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~v------~~~P~~~lid~~G~i~~~~ 116 (131)
T cd03009 78 LAVPFSDRERRSRLNRTFKI------EGIPTLIILDADGEVVTTD 116 (131)
T ss_pred eEcccCCHHHHHHHHHHcCC------CCCCEEEEECCCCCEEccc
Confidence 122222 2444788999999 6789999999999999753
No 88
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.75 E-value=8.9e-18 Score=137.14 Aligned_cols=108 Identities=18% Similarity=0.259 Sum_probs=96.1
Q ss_pred CCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC--CHHhHHHHhcCc
Q psy17178 248 PFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD--SHFTHLAWVNTP 325 (384)
Q Consensus 248 P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d--~~~~~~~~~~~~ 325 (384)
|+|++++ .+|+.+++++++||+++|+|| ++||++|+.++|.|++++++ +.+++|+.| +++.+++|.+++
T Consensus 1 p~f~l~~---~~g~~~~~~~~~~k~~vl~F~-~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~~~~~~~~~~~~~~~ 71 (123)
T cd03011 1 PLFTATT---LDGEQFDLESLSGKPVLVYFW-ATWCPVCRFTSPTVNQLAAD-----YPVVSVALRSGDDGAVARFMQKK 71 (123)
T ss_pred CCceeec---CCCCEeeHHHhCCCEEEEEEE-CCcChhhhhhChHHHHHHhh-----CCEEEEEccCCCHHHHHHHHHHc
Confidence 7889884 499999999999999999999 99999999999999999875 567888876 467888888876
Q ss_pred cccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178 326 RKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE 378 (384)
Q Consensus 326 ~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~ 378 (384)
+++|+++.|+++++.+.|++ .+.|+++|||++| |++++.
T Consensus 72 -------~~~~~~~~d~~~~~~~~~~i------~~~P~~~vid~~g-i~~~~~ 110 (123)
T cd03011 72 -------GYGFPVINDPDGVISARWGV------SVTPAIVIVDPGG-IVFVTT 110 (123)
T ss_pred -------CCCccEEECCCcHHHHhCCC------CcccEEEEEcCCC-eEEEEe
Confidence 78999999999999999999 6899999999999 888665
No 89
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.74 E-value=7.6e-18 Score=166.50 Aligned_cols=123 Identities=10% Similarity=0.164 Sum_probs=103.3
Q ss_pred ccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC------
Q psy17178 51 KNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS------ 124 (384)
Q Consensus 51 ~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~------ 124 (384)
...++++|+|++.+. +|+.++++ +||+|||+|| ++|||+|+.++|.|++++++++..+++||+|+.+.
T Consensus 32 ~~~~~~lP~f~l~D~---dG~~v~ls--kGKpVvV~FW-ATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~ 105 (521)
T PRK14018 32 ATVPHTLSTLKTADN---RPASVYLK--KDKPTLIKFW-ASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKK 105 (521)
T ss_pred ccccCCCCCeEeecC---CCceeecc--CCCEEEEEEE-cCCCHHHHHHHHHHHHHHHHhccCCeEEEEEeccccccccc
Confidence 567789999999777 99999998 8999999999 99999999999999999999987889999998742
Q ss_pred HHhHHhhccCccccCCCCcc-ceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeee
Q psy17178 125 HFTHLAWVNTPRKEGGLGKL-KIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALY 197 (384)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~-~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~ 197 (384)
.+..++|.+.+ ++ ++|++.|.++++++.|++ ...|+++|||++|+|+....|.+.
T Consensus 106 ~~~~~~~~~~~-------~y~~~pV~~D~~~~lak~fgV-----------~giPTt~IIDkdGkIV~~~~G~~~ 161 (521)
T PRK14018 106 DGDFQKWYAGL-------DYPKLPVLTDNGGTLAQSLNI-----------SVYPSWAIIGKDGDVQRIVKGSIS 161 (521)
T ss_pred HHHHHHHHHhC-------CCcccceeccccHHHHHHcCC-----------CCcCeEEEEcCCCeEEEEEeCCCC
Confidence 23444555432 33 689999999999999998 234678899999999999999764
No 90
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.73 E-value=3.9e-17 Score=141.38 Aligned_cols=127 Identities=20% Similarity=0.227 Sum_probs=100.4
Q ss_pred CCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhC--CcEEEEEeCC----CHH
Q psy17178 243 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI--NTEVVAASVD----SHF 316 (384)
Q Consensus 243 ~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~--~v~vv~Is~d----~~~ 316 (384)
.....|+|++. |++|+++++++++||++||+|.++.|..+|+..+..|+++++++.++ .+++++||+| +|+
T Consensus 28 ~~~~~~~f~L~---d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~ 104 (174)
T PF02630_consen 28 NPRIVPDFTLT---DQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPE 104 (174)
T ss_dssp TSCSSST-EEE---ETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HH
T ss_pred CCccCCCcEEE---cCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHH
Confidence 55678999998 78999999999999999999999999999999999999999999864 6999999986 467
Q ss_pred hHHHHhcCccccCCCCCcceeEEec---CchHHHHHhCceecC------CC----ceeeEEEEEeCCceEEEEEec
Q psy17178 317 THLAWVNTPRKEGGLGKLKIPLLSD---LTHKISLDYGVYLSD------QG----HTLDKYCLECYKMVIVYWFER 379 (384)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~D---~~~~~~~~~gv~~~~------~~----~~~p~~~lId~~G~i~~~~~~ 379 (384)
.+++|.+.+ +.++..+.. .-.++++.|+++... .+ .|...+||||++|+|+..|..
T Consensus 105 ~L~~Y~~~~-------~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~~ 173 (174)
T PF02630_consen 105 VLKKYAKKF-------GPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYNL 173 (174)
T ss_dssp HHHHHHHCH-------TTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEECS
T ss_pred HHHHHHHhc-------CCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEcc
Confidence 888888877 444444432 226788899987532 11 467789999999999998863
No 91
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.73 E-value=9.4e-18 Score=136.99 Aligned_cols=113 Identities=19% Similarity=0.301 Sum_probs=97.9
Q ss_pred CccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC--HHhHHhhccCc
Q psy17178 58 PFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS--HFTHLAWVNTP 135 (384)
Q Consensus 58 P~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~--~~~~~~~~~~~ 135 (384)
|+|++.+. +|+.+++++++||+++|+|| ++|||+|+.++|.|++++++ +++++|+.|+ ++.+++|.+.+
T Consensus 1 p~f~l~~~---~g~~~~~~~~~~k~~vl~F~-~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~~~~~~~~~~~~~~~ 71 (123)
T cd03011 1 PLFTATTL---DGEQFDLESLSGKPVLVYFW-ATWCPVCRFTSPTVNQLAAD-----YPVVSVALRSGDDGAVARFMQKK 71 (123)
T ss_pred CCceeecC---CCCEeeHHHhCCCEEEEEEE-CCcChhhhhhChHHHHHHhh-----CCEEEEEccCCCHHHHHHHHHHc
Confidence 78999877 89999999999999999999 99999999999999999875 6678888764 67777887753
Q ss_pred cccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeeee
Q psy17178 136 RKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYS 198 (384)
Q Consensus 136 ~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~p 198 (384)
+++||++.|.++++.++|++ ...|+++++|++| |+....|...+
T Consensus 72 -------~~~~~~~~d~~~~~~~~~~i-----------~~~P~~~vid~~g-i~~~~~g~~~~ 115 (123)
T cd03011 72 -------GYGFPVINDPDGVISARWGV-----------SVTPAIVIVDPGG-IVFVTTGVTSE 115 (123)
T ss_pred -------CCCccEEECCCcHHHHhCCC-----------CcccEEEEEcCCC-eEEEEeccCCH
Confidence 78999999999999999998 3457889999999 98888887744
No 92
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.73 E-value=3.8e-18 Score=147.01 Aligned_cols=130 Identities=16% Similarity=0.108 Sum_probs=100.3
Q ss_pred cccCCCCCCccEEEee----ecC---ccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEE-----
Q psy17178 50 SKNLSKPAPFWQGTAV----VDG---QLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEV----- 117 (384)
Q Consensus 50 ~~~~G~~aP~f~l~~~----~~~---~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~v----- 117 (384)
.+.+|++.|..+..+- .++ +.++++.++++||+.||+|| |+||++|+.|+|.|.++ +++|+.+
T Consensus 22 ~~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~-Aswc~~c~~e~P~l~~l----~~~~~~~~~y~~ 96 (184)
T TIGR01626 22 NLQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHI-AGRTSAKEXNASLIDAI----KAAKFPPVKYQT 96 (184)
T ss_pred hhhcCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEE-ecCCChhhccchHHHHH----HHcCCCcccccc
Confidence 5679999999976532 111 24578999999999999999 99999999999999998 4568888
Q ss_pred -EEEeCCC-HHhHHhhccCccccCCCCcccee---EEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccccc
Q psy17178 118 -VAASVDS-HFTHLAWVNTPRKEGGLGKLKIP---LLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYA 192 (384)
Q Consensus 118 -i~Vs~d~-~~~~~~~~~~~~~~~~~~~~~~p---~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~ 192 (384)
++||.|+ ......|.+.+.+. .+..|| ++.|.++.++.+||+. +.+ +++||||++|+|+..+
T Consensus 97 t~~IN~dd~~~~~~~fVk~fie~---~~~~~P~~~vllD~~g~v~~~~gv~--------~~P--~T~fVIDk~GkVv~~~ 163 (184)
T TIGR01626 97 TTIINADDAIVGTGMFVKSSAKK---GKKENPWSQVVLDDKGAVKNAWQLN--------SED--SAIIVLDKTGKVKFVK 163 (184)
T ss_pred eEEEECccchhhHHHHHHHHHHH---hcccCCcceEEECCcchHHHhcCCC--------CCC--ceEEEECCCCcEEEEE
Confidence 9999986 44445554433222 155677 9999999999999983 222 3448999999999999
Q ss_pred ceeee
Q psy17178 193 GGALY 197 (384)
Q Consensus 193 ~g~~~ 197 (384)
.|.+.
T Consensus 164 ~G~l~ 168 (184)
T TIGR01626 164 EGALS 168 (184)
T ss_pred eCCCC
Confidence 99763
No 93
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.73 E-value=1.5e-17 Score=133.02 Aligned_cols=113 Identities=20% Similarity=0.287 Sum_probs=98.6
Q ss_pred ccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC--HHhHHhhccCcc
Q psy17178 59 FWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS--HFTHLAWVNTPR 136 (384)
Q Consensus 59 ~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~--~~~~~~~~~~~~ 136 (384)
+|++.+. +|+.+++++++||+++|.|| ++||+.|...++.|.++.+++++.++.+++|+.|+ .+..+++.+..
T Consensus 1 ~~~~~~~---~g~~~~~~~~~~k~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~- 75 (116)
T cd02966 1 DFSLPDL---DGKPVSLSDLKGKVVLVNFW-ASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKY- 75 (116)
T ss_pred CccccCC---CCCEeehHHcCCCEEEEEee-cccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHc-
Confidence 4666666 88999999999999999999 99999999999999999999987889999999998 78888888753
Q ss_pred ccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccc
Q psy17178 137 KEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAG 193 (384)
Q Consensus 137 ~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~ 193 (384)
+.+++++.|....+++.||+. ..|.++|+|++|+|+....
T Consensus 76 ------~~~~~~~~~~~~~~~~~~~~~-----------~~P~~~l~d~~g~v~~~~~ 115 (116)
T cd02966 76 ------GITFPVLLDPDGELAKAYGVR-----------GLPTTFLIDRDGRIRARHV 115 (116)
T ss_pred ------CCCcceEEcCcchHHHhcCcC-----------ccceEEEECCCCcEEEEec
Confidence 689999999999999999982 3467899999999976544
No 94
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.72 E-value=1.7e-17 Score=179.00 Aligned_cols=122 Identities=11% Similarity=0.094 Sum_probs=105.8
Q ss_pred CCCCCCCCceeeeEEcCcceeeec-cccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeC---CC---
Q psy17178 242 FVSKPAPFWQGTAVVDGQLKEIKL-SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV---DS--- 314 (384)
Q Consensus 242 ~~g~~~P~f~l~~l~d~~g~~~~l-~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~---d~--- 314 (384)
..|..+|+|..+.. +.+|+++++ ++++||++||+|| ++||++|+.++|.|++++++|+++++.|++|+. |.
T Consensus 392 ~~g~~~p~f~~~~~-~~~g~~~~l~~~lkGK~vll~FW-AsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~ 469 (1057)
T PLN02919 392 KTATKVPEFPPKLD-WLNTAPLQFRRDLKGKVVILDFW-TYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKD 469 (1057)
T ss_pred ccCCcCCCCccccc-ccCCccccchhhcCCCEEEEEEE-CCcChhHHhHhHHHHHHHHHcCCCCeEEEEEeccccccccc
Confidence 36899999998753 358899998 6899999999999 999999999999999999999988999999974 33
Q ss_pred HHhHHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178 315 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE 378 (384)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~ 378 (384)
.+..+++++++ +++||++.|.++.+.++|++ ...|+++|||++|+|++.+.
T Consensus 470 ~~~~~~~~~~~-------~i~~pvv~D~~~~~~~~~~V------~~iPt~ilid~~G~iv~~~~ 520 (1057)
T PLN02919 470 LEAIRNAVLRY-------NISHPVVNDGDMYLWRELGV------SSWPTFAVVSPNGKLIAQLS 520 (1057)
T ss_pred HHHHHHHHHHh-------CCCccEEECCchHHHHhcCC------CccceEEEECCCCeEEEEEe
Confidence 34455566554 89999999999999999999 78999999999999999764
No 95
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.71 E-value=5.1e-17 Score=139.16 Aligned_cols=108 Identities=10% Similarity=0.094 Sum_probs=87.8
Q ss_pred CCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHh
Q psy17178 243 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWV 322 (384)
Q Consensus 243 ~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~ 322 (384)
.....|+|++. +|+.+++++++ ||+|| ++|||+|+.++|.|+++++++ ++.|++||.|...
T Consensus 51 ~~~~~~~f~l~-----dG~~v~lsd~~----lV~Fw-aswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~~~------ 111 (181)
T PRK13728 51 EKPAPRWFRLS-----NGRQVNLADWK----VVLFM-QGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDGQG------ 111 (181)
T ss_pred CCCCCCccCCC-----CCCEeehhHce----EEEEE-CCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCCCC------
Confidence 34567889886 99999999997 77899 999999999999999999987 6999999987431
Q ss_pred cCccccCCCCCcceeEEec-CchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEecCCCC
Q psy17178 323 NTPRKEGGLGKLKIPLLSD-LTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFERGNCD 383 (384)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~D-~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~~~d 383 (384)
...||++.| .++.+.+.||+.. ..+|++||||++|++++....|..|
T Consensus 112 ----------~~~fPv~~dd~~~~~~~~~g~~~----~~iPttfLId~~G~i~~~~~~G~~~ 159 (181)
T PRK13728 112 ----------DTAFPEALPAPPDVMQTFFPNIP----VATPTTFLVNVNTLEALPLLQGATD 159 (181)
T ss_pred ----------CCCCceEecCchhHHHHHhCCCC----CCCCeEEEEeCCCcEEEEEEECCCC
Confidence 368999985 5677888898410 3789999999999998644445554
No 96
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.71 E-value=7.2e-17 Score=139.92 Aligned_cols=123 Identities=12% Similarity=0.055 Sum_probs=93.5
Q ss_pred CCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeC--------CCHH
Q psy17178 245 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV--------DSHF 316 (384)
Q Consensus 245 ~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~--------d~~~ 316 (384)
+.+++|++.++ +|+.++|++++||++||+|| |+||+.|. +++.|++++++|+++|+.|++|+. ++.+
T Consensus 3 ~~~~~f~~~~~---~G~~v~Ls~~~GKvvLVvf~-AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ 77 (183)
T PRK10606 3 DSILTTVVTTI---DGEVTTLEKYAGNVLLIVNV-ASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDE 77 (183)
T ss_pred CCccCcEeECC---CCCEEeHHHhCCCEEEEEEE-eCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHH
Confidence 35789998855 99999999999999999999 99999885 899999999999999999999987 4667
Q ss_pred hHHHHhc-CccccCCCCCcceeEEec--Cc----hHHHHHhCceec----CC--C------------------ceeeEEE
Q psy17178 317 THLAWVN-TPRKEGGLGKLKIPLLSD--LT----HKISLDYGVYLS----DQ--G------------------HTLDKYC 365 (384)
Q Consensus 317 ~~~~~~~-~~~~~~~~~~~~~~~~~D--~~----~~~~~~~gv~~~----~~--~------------------~~~p~~~ 365 (384)
++++|++ ++ +++||++.+ -+ +.+.+-+.-..+ +. + .-.=+-|
T Consensus 78 ei~~f~~~~~-------g~~Fpv~~k~dvnG~~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KF 150 (183)
T PRK10606 78 EIKTYCRTTW-------GVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKF 150 (183)
T ss_pred HHHHHHHHcc-------CCCceeEEEEccCCCCCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEE
Confidence 8888886 44 889999944 33 234433321000 00 0 0011369
Q ss_pred EEeCCceEEEEEec
Q psy17178 366 LECYKMVIVYWFER 379 (384)
Q Consensus 366 lId~~G~i~~~~~~ 379 (384)
|||++|+++.+|..
T Consensus 151 Lv~~~G~vv~r~~~ 164 (183)
T PRK10606 151 LVGRDGQVIQRFSP 164 (183)
T ss_pred EECCCCcEEEEECC
Confidence 99999999998864
No 97
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.70 E-value=2e-17 Score=136.76 Aligned_cols=109 Identities=12% Similarity=0.153 Sum_probs=82.5
Q ss_pred cCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhC--CcEEEEEeCCCH-HhHHhhccCccccCCCCc
Q psy17178 67 DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI--NTEVVAASVDSH-FTHLAWVNTPRKEGGLGK 143 (384)
Q Consensus 67 ~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~--~v~vi~Vs~d~~-~~~~~~~~~~~~~~~~~~ 143 (384)
+.+|+.++|++++||+++|+|| ++||++|+.++|.|++++++++++ ++++++|+.|.. +..+++.+. . ....
T Consensus 5 ~~~G~~v~l~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~---~-~~~~ 79 (131)
T cd03009 5 RNDGGKVPVSSLEGKTVGLYFS-ASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSK---M-PWLA 79 (131)
T ss_pred ccCCCCccHHHhCCcEEEEEEE-CCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHc---C-CeeE
Confidence 3489999999999999999999 899999999999999999999865 799999999863 333444432 2 0002
Q ss_pred cceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccccc
Q psy17178 144 LKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYA 192 (384)
Q Consensus 144 ~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~ 192 (384)
++++. .|....++++||+ .+ .|+++|||++|+|+...
T Consensus 80 ~~~~~-~~~~~~~~~~~~v--------~~---~P~~~lid~~G~i~~~~ 116 (131)
T cd03009 80 VPFSD-RERRSRLNRTFKI--------EG---IPTLIILDADGEVVTTD 116 (131)
T ss_pred cccCC-HHHHHHHHHHcCC--------CC---CCEEEEECCCCCEEccc
Confidence 22322 3445789999998 22 36789999999997543
No 98
>KOG0855|consensus
Probab=99.70 E-value=1.5e-16 Score=129.99 Aligned_cols=130 Identities=24% Similarity=0.245 Sum_probs=116.8
Q ss_pred CCCCCCCCCCceeeeEEcCcceeeeccccCCC-eEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhH
Q psy17178 240 IPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH 318 (384)
Q Consensus 240 ~~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk-~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~ 318 (384)
..++|+.+|+|+|. |++|.+++|.++.|+ +||++||++..+|.|..+...+..-|++++..+.+|+++|.|+...+
T Consensus 62 ~v~~Gd~iPD~tL~---dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D~s~sq 138 (211)
T KOG0855|consen 62 KVNKGDAIPDFTLK---DEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGDDSASQ 138 (211)
T ss_pred eeecCCcCCCcccc---cCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccCchHHH
Confidence 34689999999998 889999999999885 99999999999999999999999999999998999999999999999
Q ss_pred HHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCC-CceeeEEEEEeCCceEEEEEec
Q psy17178 319 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ-GHTLDKYCLECYKMVIVYWFER 379 (384)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~-~~~~p~~~lId~~G~i~~~~~~ 379 (384)
++|.... +++|.+++|+.+++.+.+|+...+. |...+.+||.|+.|....+++.
T Consensus 139 KaF~sKq-------nlPYhLLSDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~~k~~ik~~ 193 (211)
T KOG0855|consen 139 KAFASKQ-------NLPYHLLSDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKGGVKQLIKNN 193 (211)
T ss_pred HHhhhhc-------cCCeeeecCcchhHHHHhCCCCCCCCCcccceEEEEecCCeEEEEEec
Confidence 9998876 8999999999999999999976554 4578889999988877766653
No 99
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.69 E-value=7.4e-17 Score=133.51 Aligned_cols=104 Identities=17% Similarity=0.178 Sum_probs=82.5
Q ss_pred cCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhC--CcEEEEEeCCC-HHhHHhhccCccccCCCCc
Q psy17178 67 DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI--NTEVVAASVDS-HFTHLAWVNTPRKEGGLGK 143 (384)
Q Consensus 67 ~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~--~v~vi~Vs~d~-~~~~~~~~~~~~~~~~~~~ 143 (384)
|++ +++++++++||+++|+|| ++||++|+.++|.|+++++++++. ++++++|+.|. .+..++|.+++ +
T Consensus 5 ~~~-~~v~l~~~~Gk~vll~F~-atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~-------~ 75 (132)
T cd02964 5 DGE-GVVPVSALEGKTVGLYFS-ASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEM-------P 75 (132)
T ss_pred cCC-ccccHHHhCCCEEEEEEE-CCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcC-------C
Confidence 444 699999999999999999 999999999999999999999875 79999999986 45677777743 3
Q ss_pred cceeEE--ee--CcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccc
Q psy17178 144 LKIPLL--SD--LTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGY 191 (384)
Q Consensus 144 ~~~p~l--~D--~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~ 191 (384)
+++.+ .| ..+.+++.||+ ...|+++|||++|+|+..
T Consensus 76 -~~~~~~~~d~~~~~~~~~~~~v-----------~~iPt~~lid~~G~iv~~ 115 (132)
T cd02964 76 -PWLAVPFEDEELRELLEKQFKV-----------EGIPTLVVLKPDGDVVTT 115 (132)
T ss_pred -CeEeeccCcHHHHHHHHHHcCC-----------CCCCEEEEECCCCCEEch
Confidence 33333 33 23578888998 234678899999999743
No 100
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.69 E-value=3.5e-17 Score=176.58 Aligned_cols=129 Identities=14% Similarity=0.102 Sum_probs=103.9
Q ss_pred ccCCCCCCccEEEeeecCccceEEc-cccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeC---CCHH
Q psy17178 51 KNLSKPAPFWQGTAVVDGQLKEIKL-SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV---DSHF 126 (384)
Q Consensus 51 ~~~G~~aP~f~l~~~~~~~g~~~~l-~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~---d~~~ 126 (384)
..+|+++|+|+.++. ..+|+++++ ++++||++||+|| ++||++|+.++|.|++++++|+++++++++|+. |..+
T Consensus 391 ~~~g~~~p~f~~~~~-~~~g~~~~l~~~lkGK~vll~FW-AsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~ 468 (1057)
T PLN02919 391 KKTATKVPEFPPKLD-WLNTAPLQFRRDLKGKVVILDFW-TYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEK 468 (1057)
T ss_pred cccCCcCCCCccccc-ccCCccccchhhcCCCEEEEEEE-CCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccc
Confidence 447999999997651 227889998 6899999999999 999999999999999999999988999999974 3322
Q ss_pred hHHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178 127 THLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL 196 (384)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~ 196 (384)
..+++.+.+.++ +++||++.|.++++++.|++ ...|+++|||++|+|+....|..
T Consensus 469 ~~~~~~~~~~~~----~i~~pvv~D~~~~~~~~~~V-----------~~iPt~ilid~~G~iv~~~~G~~ 523 (1057)
T PLN02919 469 DLEAIRNAVLRY----NISHPVVNDGDMYLWRELGV-----------SSWPTFAVVSPNGKLIAQLSGEG 523 (1057)
T ss_pred cHHHHHHHHHHh----CCCccEEECCchHHHHhcCC-----------CccceEEEECCCCeEEEEEeccc
Confidence 233333333344 88999999999999999998 33467899999999987766644
No 101
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.66 E-value=5.9e-16 Score=134.21 Aligned_cols=87 Identities=13% Similarity=0.105 Sum_probs=74.9
Q ss_pred CCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeC--------CCHH
Q psy17178 55 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV--------DSHF 126 (384)
Q Consensus 55 ~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~--------d~~~ 126 (384)
+.+++|++.++ +|++++|++++||++||+|| |+||+.|. +++.|++++++|+++|++|++|+. ++.+
T Consensus 3 ~~~~~f~~~~~---~G~~v~Ls~~~GKvvLVvf~-AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ 77 (183)
T PRK10606 3 DSILTTVVTTI---DGEVTTLEKYAGNVLLIVNV-ASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDE 77 (183)
T ss_pred CCccCcEeECC---CCCEEeHHHhCCCEEEEEEE-eCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHH
Confidence 35789999887 99999999999999999999 99999885 899999999999999999999987 3567
Q ss_pred hHHhhccCccccCCCCccceeEEeeC
Q psy17178 127 THLAWVNTPRKEGGLGKLKIPLLSDL 152 (384)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~p~l~D~ 152 (384)
.+++|++. ++ +++||++++.
T Consensus 78 ei~~f~~~--~~----g~~Fpv~~k~ 97 (183)
T PRK10606 78 EIKTYCRT--TW----GVTFPMFSKI 97 (183)
T ss_pred HHHHHHHH--cc----CCCceeEEEE
Confidence 78888752 22 7899999543
No 102
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.66 E-value=7.3e-16 Score=119.88 Aligned_cols=90 Identities=14% Similarity=0.250 Sum_probs=72.2
Q ss_pred CCeEEEEEEeCCCCcCchHhHHHHHHHHHHHH-hCCcEEEEEeCCC-HHhHHHHhcCccccCCCCCcceeEEec---Cch
Q psy17178 270 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH-QINTEVVAASVDS-HFTHLAWVNTPRKEGGLGKLKIPLLSD---LTH 344 (384)
Q Consensus 270 Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~-~~~v~vv~Is~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~D---~~~ 344 (384)
||+++|+|| ++||++|..++|.|.+++++++ +.++++|+||.|. .+..+++.+.. +.++..+.. ...
T Consensus 1 gK~~ll~fw-a~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 72 (95)
T PF13905_consen 1 GKPVLLYFW-ASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKN-------NFPWYNVPFDDDNNS 72 (95)
T ss_dssp TSEEEEEEE--TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTC-------TTSSEEEETTTHHHH
T ss_pred CCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhc-------CCCceEEeeCcchHH
Confidence 899999999 9999999999999999999998 6789999999985 35566666654 345555443 347
Q ss_pred HHHHHhCceecCCCceeeEEEEEeCCceE
Q psy17178 345 KISLDYGVYLSDQGHTLDKYCLECYKMVI 373 (384)
Q Consensus 345 ~~~~~~gv~~~~~~~~~p~~~lId~~G~i 373 (384)
.+.+.|++ ...|+++|+|++|+|
T Consensus 73 ~l~~~~~i------~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 73 ELLKKYGI------NGIPTLVLLDPDGKI 95 (95)
T ss_dssp HHHHHTT-------TSSSEEEEEETTSBE
T ss_pred HHHHHCCC------CcCCEEEEECCCCCC
Confidence 88999999 789999999999997
No 103
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=7.4e-16 Score=124.63 Aligned_cols=127 Identities=28% Similarity=0.468 Sum_probs=109.0
Q ss_pred cccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178 50 SKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL 129 (384)
Q Consensus 50 ~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~ 129 (384)
.+++|+++|+|++.+. +.+.++|+++.||..+|+.+|+-.+|+|..+...|++...++ .++.|+.||.|-|++++
T Consensus 17 ~~~vGd~ap~ftl~~~---dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~--~~~~Vl~IS~DLPFAq~ 91 (158)
T COG2077 17 EPQVGDKAPDFTLVGK---DLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKL--GNTVVLCISMDLPFAQK 91 (158)
T ss_pred CCccCCcCCceEEEcC---cccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhcc--CCcEEEEEeCCChhHHh
Confidence 4679999999999555 889999999999999999999999999999999999988776 45899999999999999
Q ss_pred hhccCccccCCCCcc-ceeEEeeCc-chhHHhhcCcccCCCCcccceeEEEEEEEecCCCccc
Q psy17178 130 AWVNTPRKEGGLGKL-KIPLLSDLT-HKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNG 190 (384)
Q Consensus 130 ~~~~~~~~~~~~~~~-~~p~l~D~~-~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~ 190 (384)
+|.... ++ +...++|.- .++.++||+...+ |...| ...|++|++|.+|+|.+
T Consensus 92 RfC~ae-------Gi~nv~~lSd~r~~~Fge~yGv~I~e-gpL~g-LlARaV~V~De~g~V~y 145 (158)
T COG2077 92 RFCGAE-------GIENVITLSDFRDRAFGENYGVLINE-GPLAG-LLARAVFVLDENGKVTY 145 (158)
T ss_pred hhhhhc-------CcccceEhhhhhhhhhhHhhCEEecc-ccccC-eeeeEEEEEcCCCcEEE
Confidence 999853 44 477888864 6799999998765 33334 55799999999999974
No 104
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.63 E-value=7.2e-16 Score=132.10 Aligned_cols=108 Identities=10% Similarity=0.119 Sum_probs=86.9
Q ss_pred cCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhh
Q psy17178 52 NLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW 131 (384)
Q Consensus 52 ~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~ 131 (384)
.+..+.|+|++ . +|+.+++++++ +|+|| ++|||+|++++|.|+++++++ |++|++||.|...
T Consensus 50 ~~~~~~~~f~l--~---dG~~v~lsd~~----lV~Fw-aswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~~~----- 111 (181)
T PRK13728 50 TEKPAPRWFRL--S---NGRQVNLADWK----VVLFM-QGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDGQG----- 111 (181)
T ss_pred cCCCCCCccCC--C---CCCEeehhHce----EEEEE-CCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCCCC-----
Confidence 45667889997 3 88999999998 77899 999999999999999999987 6999999987421
Q ss_pred ccCccccCCCCccceeEEee-CcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcc-cccceeee
Q psy17178 132 VNTPRKEGGLGKLKIPLLSD-LTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVN-GYAGGALY 197 (384)
Q Consensus 132 ~~~~~~~~~~~~~~~p~l~D-~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~-~~~~g~~~ 197 (384)
...||++.| ..+.+.+.||+.. ...|++|+||++|+++ ....|.+.
T Consensus 112 -----------~~~fPv~~dd~~~~~~~~~g~~~---------~~iPttfLId~~G~i~~~~~~G~~~ 159 (181)
T PRK13728 112 -----------DTAFPEALPAPPDVMQTFFPNIP---------VATPTTFLVNVNTLEALPLLQGATD 159 (181)
T ss_pred -----------CCCCceEecCchhHHHHHhCCCC---------CCCCeEEEEeCCCcEEEEEEECCCC
Confidence 347999996 5677888888511 1347889999999995 46777663
No 105
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=99.61 E-value=2.2e-14 Score=127.20 Aligned_cols=124 Identities=20% Similarity=0.212 Sum_probs=98.9
Q ss_pred CceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHH---hCCcEEEEEeCCCH----HhHHHH
Q psy17178 249 FWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH---QINTEVVAASVDSH----FTHLAW 321 (384)
Q Consensus 249 ~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~---~~~v~vv~Is~d~~----~~~~~~ 321 (384)
+|+++ |++|+++++.+++||+++|+|.+++|..+|+.++..|.+++++.. ..+++++.||+|+. +.+++|
T Consensus 49 ~f~l~---d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y 125 (207)
T COG1999 49 DFELT---DQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKY 125 (207)
T ss_pred ceeee---cCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHH
Confidence 68887 889999999999999999999999999999999999999999987 35689999998754 555555
Q ss_pred hc-CccccCCCCCcceeEEecCc---hHHHHHhCceec--CC----C---ceeeEEEEEeCCceEEEEEecCCC
Q psy17178 322 VN-TPRKEGGLGKLKIPLLSDLT---HKISLDYGVYLS--DQ----G---HTLDKYCLECYKMVIVYWFERGNC 382 (384)
Q Consensus 322 ~~-~~~~~~~~~~~~~~~~~D~~---~~~~~~~gv~~~--~~----~---~~~p~~~lId~~G~i~~~~~~~~~ 382 (384)
.+ .. ...|..+.... .++.++|+++.. +. + .|....||||++|+++..+..++.
T Consensus 126 ~~~~~-------~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~ 192 (207)
T COG1999 126 AELNF-------DPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEP 192 (207)
T ss_pred hcccC-------CCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCC
Confidence 55 22 45555555433 688899999852 11 1 467778999999999998887653
No 106
>KOG0854|consensus
Probab=99.61 E-value=4.5e-15 Score=122.46 Aligned_cols=136 Identities=24% Similarity=0.381 Sum_probs=118.4
Q ss_pred CCCCCCCCceeeeEEcCcceeeeccccCC-CeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHH
Q psy17178 242 FVSKPAPFWQGTAVVDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA 320 (384)
Q Consensus 242 ~~g~~~P~f~l~~l~d~~g~~~~l~d~~G-k~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~ 320 (384)
.+|+.+|+|+..+. . ..+++.||.| .|.|++-.++.++|+|..|+..+.++..+|..+||+.++.|+|+.++++.
T Consensus 7 ~lgd~~PNfea~Tt---~-g~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~vesH~~ 82 (224)
T KOG0854|consen 7 RLGDTVPNFEADTT---V-GKIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDDVESHKD 82 (224)
T ss_pred cccCcCCCcccccc---c-cceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhhHHHHHH
Confidence 57999999998643 3 4799999988 59999999999999999999999999999999999999999999999999
Q ss_pred HhcCccccCCCCC--cceeEEecCchHHHHHhCceecCC------CceeeEEEEEeCCceEEEEEecCC
Q psy17178 321 WVNTPRKEGGLGK--LKIPLLSDLTHKISLDYGVYLSDQ------GHTLDKYCLECYKMVIVYWFERGN 381 (384)
Q Consensus 321 ~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~gv~~~~~------~~~~p~~~lId~~G~i~~~~~~~~ 381 (384)
|++.++.++...+ ++||++.|+..+++-.||+....+ |.+.++.|+||++-+|+-.+-+++
T Consensus 83 Wi~DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs~lYP~ 151 (224)
T KOG0854|consen 83 WIKDIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLSFLYPS 151 (224)
T ss_pred HHHHHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEEEEEccc
Confidence 9998865543333 899999999999999999976532 467899999999999998876643
No 107
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.4e-14 Score=117.21 Aligned_cols=130 Identities=24% Similarity=0.323 Sum_probs=113.7
Q ss_pred cccCCCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHH
Q psy17178 237 SRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHF 316 (384)
Q Consensus 237 ~~~~~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~ 316 (384)
.+..+++|+.+|+|++. +.+.+.++++++.||..+|+.+|+-.+|+|..+...+++...++ .++.|+.||.|.|.
T Consensus 14 ~g~~~~vGd~ap~ftl~---~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~--~~~~Vl~IS~DLPF 88 (158)
T COG2077 14 KGNEPQVGDKAPDFTLV---GKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKL--GNTVVLCISMDLPF 88 (158)
T ss_pred cCCCCccCCcCCceEEE---cCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhcc--CCcEEEEEeCCChh
Confidence 34557899999999998 55899999999999999999999999999999999999988877 45899999999999
Q ss_pred hHHHHhcCccccCCCCCcc-eeEEecCc-hHHHHHhCceecCC---CceeeEEEEEeCCceEEEEEe
Q psy17178 317 THLAWVNTPRKEGGLGKLK-IPLLSDLT-HKISLDYGVYLSDQ---GHTLDKYCLECYKMVIVYWFE 378 (384)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~-~~~~~D~~-~~~~~~~gv~~~~~---~~~~p~~~lId~~G~i~~~~~ 378 (384)
.+++|+... ++. ...++|-. ..+.++||+...+. |...++.|++|.+|+|+|...
T Consensus 89 Aq~RfC~ae-------Gi~nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~el 148 (158)
T COG2077 89 AQKRFCGAE-------GIENVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYSEL 148 (158)
T ss_pred HHhhhhhhc-------CcccceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEEEc
Confidence 999999876 444 77788855 67889999988776 678899999999999999654
No 108
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.57 E-value=6.9e-15 Score=127.32 Aligned_cols=131 Identities=18% Similarity=0.204 Sum_probs=99.8
Q ss_pred CCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhC--CcEEEEEeCCC----HH
Q psy17178 53 LSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI--NTEVVAASVDS----HF 126 (384)
Q Consensus 53 ~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~--~v~vi~Vs~d~----~~ 126 (384)
.....|+|+|.+. +|+++++++++||++||+|....|..+|+..+..|.++.+++.+. +++++.||+|| ++
T Consensus 28 ~~~~~~~f~L~d~---~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~ 104 (174)
T PF02630_consen 28 NPRIVPDFTLTDQ---DGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPE 104 (174)
T ss_dssp TSCSSST-EEEET---TSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HH
T ss_pred CCccCCCcEEEcC---CCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHH
Confidence 4566789999655 999999999999999999998887789999999999999999864 68999999987 67
Q ss_pred hHHhhccCccccCCCCccceeEEe---eCcchhHHhhcCcccCC-----CCcccceeEEEEEEEecCCCcccccc
Q psy17178 127 THLAWVNTPRKEGGLGKLKIPLLS---DLTHKISLDYGVYLSDQ-----GPVRGSLLSTAIFVYALTSPVNGYAG 193 (384)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~p~l~---D~~~~~~~~ygv~~~~~-----g~~~g~~~~~~~~vid~~G~v~~~~~ 193 (384)
.+++|++.+ +.+|..+. +...++++.|++++... +....+.++..+++|||+|+|+.+..
T Consensus 105 ~L~~Y~~~~-------~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~ 172 (174)
T PF02630_consen 105 VLKKYAKKF-------GPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYN 172 (174)
T ss_dssp HHHHHHHCH-------TTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEEC
T ss_pred HHHHHHHhc-------CCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEc
Confidence 778888765 33444443 33467899999876432 11233456788999999999987653
No 109
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.56 E-value=2.6e-14 Score=120.42 Aligned_cols=94 Identities=18% Similarity=0.128 Sum_probs=67.0
Q ss_pred cceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeE
Q psy17178 259 QLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPL 338 (384)
Q Consensus 259 ~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (384)
.|+.++++++ .||+|| ++|||+|+.|+|.|+++++++ ++.|++|+.|.... ..||.
T Consensus 43 ~G~~~~l~~~----~lvnFW-AsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~~~~----------------~~fp~ 98 (153)
T TIGR02738 43 QGRHANQDDY----ALVFFY-QSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLDGQGL----------------TGFPD 98 (153)
T ss_pred cchhhhcCCC----EEEEEE-CCCChhHHHHHHHHHHHHHHc---CCcEEEEEeCCCcc----------------ccccc
Confidence 4556666554 599999 999999999999999999887 58999999885320 13444
Q ss_pred EecCchHHH-HHh---CceecCCCceeeEEEEEeCCceEEEEEecCCC
Q psy17178 339 LSDLTHKIS-LDY---GVYLSDQGHTLDKYCLECYKMVIVYWFERGNC 382 (384)
Q Consensus 339 ~~D~~~~~~-~~~---gv~~~~~~~~~p~~~lId~~G~i~~~~~~~~~ 382 (384)
..|.+.... +.| ++ ...|++||||++|+++.....|..
T Consensus 99 ~~~~~~~~~~~~~~~~~v------~~iPTt~LID~~G~~i~~~~~G~~ 140 (153)
T TIGR02738 99 PLPATPEVMQTFFPNPRP------VVTPATFLVNVNTRKAYPVLQGAV 140 (153)
T ss_pred ccCCchHHHHHHhccCCC------CCCCeEEEEeCCCCEEEEEeeccc
Confidence 444333333 445 55 588999999999887554444543
No 110
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.55 E-value=9.1e-15 Score=113.67 Aligned_cols=90 Identities=12% Similarity=0.253 Sum_probs=69.1
Q ss_pred CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHH-hCCcEEEEEeCCC-HHhHHhhccCccccCCCCccceeEEeeC---cc
Q psy17178 80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH-QINTEVVAASVDS-HFTHLAWVNTPRKEGGLGKLKIPLLSDL---TH 154 (384)
Q Consensus 80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~-~~~v~vi~Vs~d~-~~~~~~~~~~~~~~~~~~~~~~p~l~D~---~~ 154 (384)
||+++|+|| ++||+.|..++|.|.+++++++ +.++++|+||.|. .+..+++.+. . +.+++.+... ..
T Consensus 1 gK~~ll~fw-a~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~ 72 (95)
T PF13905_consen 1 GKPVLLYFW-ASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKK---N----NFPWYNVPFDDDNNS 72 (95)
T ss_dssp TSEEEEEEE--TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHT---C----TTSSEEEETTTHHHH
T ss_pred CCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHh---c----CCCceEEeeCcchHH
Confidence 799999999 9999999999999999999998 6789999999986 3455555543 2 4456655433 46
Q ss_pred hhHHhhcCcccCCCCcccceeEEEEEEEecCCCc
Q psy17178 155 KISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPV 188 (384)
Q Consensus 155 ~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v 188 (384)
.+.+.|++ ...|+++|+|++|+|
T Consensus 73 ~l~~~~~i-----------~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 73 ELLKKYGI-----------NGIPTLVLLDPDGKI 95 (95)
T ss_dssp HHHHHTT------------TSSSEEEEEETTSBE
T ss_pred HHHHHCCC-----------CcCCEEEEECCCCCC
Confidence 78888988 234678999999986
No 111
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.8e-12 Score=104.81 Aligned_cols=134 Identities=20% Similarity=0.263 Sum_probs=104.9
Q ss_pred cccCCCCCCccEEEeee---cCcc-ceEEcccc-CCCeEEEEEeeCCCCCCchH-HHHHHHHhHHHHHhCCc-EEEEEeC
Q psy17178 50 SKNLSKPAPFWQGTAVV---DGQL-KEIKLSDY-YGKYLVFFFYPLDFTFVCPT-EILAFNDRLEEFHQINT-EVVAASV 122 (384)
Q Consensus 50 ~~~~G~~aP~f~l~~~~---~~~g-~~~~l~~~-~gk~vvl~f~~~~~cp~C~~-~~~~l~~~~~~~~~~~v-~vi~Vs~ 122 (384)
+.++|++.|+.++.+-. +.+| ..++-.++ +||.|+|+-.|++++|.|.. ++|.+.+++++|+++|| +++.||+
T Consensus 2 ~~~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSV 81 (165)
T COG0678 2 TIMVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSV 81 (165)
T ss_pred ccccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEe
Confidence 45799999999987642 1122 45677777 89999999999999999997 89999999999999999 6889999
Q ss_pred CCHHhHHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcc
Q psy17178 123 DSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVN 189 (384)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~ 189 (384)
++...+.+|.+.. +. +-+..+++|.++++.++.|......+..-|.. +-.+-++-+||.|.
T Consensus 82 ND~FVm~AWak~~----g~-~~~I~fi~Dg~geFTk~~Gm~~d~~~~g~G~R-S~RYsmvV~nGvV~ 142 (165)
T COG0678 82 NDAFVMNAWAKSQ----GG-EGNIKFIPDGNGEFTKAMGMLVDKSDLGFGVR-SWRYSMVVENGVVE 142 (165)
T ss_pred CcHHHHHHHHHhc----CC-CccEEEecCCCchhhhhcCceeecccCCccee-eeeEEEEEeCCeEE
Confidence 9999999999864 11 11788999999999999999766532223333 33345666788875
No 112
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.39 E-value=5.7e-13 Score=112.31 Aligned_cols=96 Identities=19% Similarity=0.194 Sum_probs=67.2
Q ss_pred ccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeE
Q psy17178 69 QLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPL 148 (384)
Q Consensus 69 ~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~ 148 (384)
.|+.+++++++ +|+|| ++|||+|+.++|.|+++++++ ++.+++|+.|.... + .||.
T Consensus 43 ~G~~~~l~~~~----lvnFW-AsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~~~~-----~-----------~fp~ 98 (153)
T TIGR02738 43 QGRHANQDDYA----LVFFY-QSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLDGQGL-----T-----------GFPD 98 (153)
T ss_pred cchhhhcCCCE----EEEEE-CCCChhHHHHHHHHHHHHHHc---CCcEEEEEeCCCcc-----c-----------cccc
Confidence 46777776654 99999 999999999999999999887 68999999886321 1 3555
Q ss_pred EeeCcchhH-HhhcCcccCCCCcccceeEEEEEEEecCCCc-ccccceee
Q psy17178 149 LSDLTHKIS-LDYGVYLSDQGPVRGSLLSTAIFVYALTSPV-NGYAGGAL 196 (384)
Q Consensus 149 l~D~~~~~~-~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v-~~~~~g~~ 196 (384)
..|.+.... +.|+.+ ++...|++|+||++|++ +....|.+
T Consensus 99 ~~~~~~~~~~~~~~~~--------~v~~iPTt~LID~~G~~i~~~~~G~~ 140 (153)
T TIGR02738 99 PLPATPEVMQTFFPNP--------RPVVTPATFLVNVNTRKAYPVLQGAV 140 (153)
T ss_pred ccCCchHHHHHHhccC--------CCCCCCeEEEEeCCCCEEEEEeeccc
Confidence 554444443 344220 22345788999999885 44566655
No 113
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=99.37 E-value=1.7e-12 Score=115.19 Aligned_cols=132 Identities=19% Similarity=0.163 Sum_probs=98.9
Q ss_pred ccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHH---hCCcEEEEEeCCCHHhHHhhccCc
Q psy17178 59 FWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH---QINTEVVAASVDSHFTHLAWVNTP 135 (384)
Q Consensus 59 ~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~---~~~v~vi~Vs~d~~~~~~~~~~~~ 135 (384)
+|++. |++|+++++.+++||+++|+|...+|..+|+.++..|.++.+++. ..+++++.||+||.....+..+.+
T Consensus 49 ~f~l~---d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y 125 (207)
T COG1999 49 DFELT---DQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKY 125 (207)
T ss_pred ceeee---cCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHH
Confidence 79985 459999999999999999999988877899999999999999997 457899999999844333333322
Q ss_pred cc-cCCCCccceeEEee---CcchhHHhhcCcccC--C-CC-cccceeEEEEEEEecCCCcccccceee
Q psy17178 136 RK-EGGLGKLKIPLLSD---LTHKISLDYGVYLSD--Q-GP-VRGSLLSTAIFVYALTSPVNGYAGGAL 196 (384)
Q Consensus 136 ~~-~~~~~~~~~p~l~D---~~~~~~~~ygv~~~~--~-g~-~~g~~~~~~~~vid~~G~v~~~~~g~~ 196 (384)
.+ +. ...|..+.. ...+++++|+|+... . +. .+.+.++..++++|++|++.....+..
T Consensus 126 ~~~~~---~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~ 191 (207)
T COG1999 126 AELNF---DPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGE 191 (207)
T ss_pred hcccC---CCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCC
Confidence 22 11 334555554 237899999998632 2 21 467788899999999999986554443
No 114
>KOG0541|consensus
Probab=99.34 E-value=3.8e-12 Score=103.50 Aligned_cols=138 Identities=17% Similarity=0.232 Sum_probs=106.6
Q ss_pred cccccCCCCCCccEEEeeecC----ccceEEcccc-CCCeEEEEEeeCCCCCCch-HHHHHHHHhHHHHHhCCc-EEEEE
Q psy17178 48 FYSKNLSKPAPFWQGTAVVDG----QLKEIKLSDY-YGKYLVFFFYPLDFTFVCP-TEILAFNDRLEEFHQINT-EVVAA 120 (384)
Q Consensus 48 ~~~~~~G~~aP~f~l~~~~~~----~g~~~~l~~~-~gk~vvl~f~~~~~cp~C~-~~~~~l~~~~~~~~~~~v-~vi~V 120 (384)
..++.+|+..|+-+.....+. .+.+++++++ +||.+||+-.|++++|.|. .++|.+.+..++++.+|+ +|+.|
T Consensus 6 ~a~i~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicv 85 (171)
T KOG0541|consen 6 MAPIAVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICV 85 (171)
T ss_pred cccccccCccccccchhhccCccccccceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEE
Confidence 456789999999332211111 1238999998 8999999999999999966 679999999999999999 57799
Q ss_pred eCCCHHhHHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccc
Q psy17178 121 SVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGY 191 (384)
Q Consensus 121 s~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~ 191 (384)
|+|+++..++|.+.+.+ +-...+++|+.+++.+++|+..+..+ .-+.+.++..-++-.||+|...
T Consensus 86 SVnDpFv~~aW~k~~g~-----~~~V~f~aD~~g~ftk~lgleld~~d-~~~g~RS~R~a~vvengkV~~~ 150 (171)
T KOG0541|consen 86 SVNDPFVMKAWAKSLGA-----NDHVKFVADPAGEFTKSLGLELDLSD-KLLGVRSRRYALVVENGKVTVV 150 (171)
T ss_pred ecCcHHHHHHHHhhcCc-----cceEEEEecCCCceeeeccceeeecc-ccCccccccEEEEEeCCeEEEE
Confidence 99999999999987622 23688999999999999999765421 2334556666677789988644
No 115
>KOG2792|consensus
Probab=99.33 E-value=2.4e-11 Score=107.07 Aligned_cols=121 Identities=19% Similarity=0.208 Sum_probs=95.5
Q ss_pred CCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHh-CCcE--EEEEeCC----CHHhHHH
Q psy17178 248 PFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-INTE--VVAASVD----SHFTHLA 320 (384)
Q Consensus 248 P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~-~~v~--vv~Is~d----~~~~~~~ 320 (384)
-+|+|. |.+|+.++-.|+.||+++|+|.++.|..+|+.|+..|.+..++..+ .++. -|+|++| +++.+++
T Consensus 120 GpF~L~---d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~e 196 (280)
T KOG2792|consen 120 GPFSLV---DHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAE 196 (280)
T ss_pred CceEEE---ecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHH
Confidence 678987 6699999999999999999999999999999999999999999876 3433 4677765 5788888
Q ss_pred HhcCccccCCCCCcceeEEec---CchHHHHHhCceecCC----C-----ceeeEEEEEeCCceEEEEEe
Q psy17178 321 WVNTPRKEGGLGKLKIPLLSD---LTHKISLDYGVYLSDQ----G-----HTLDKYCLECYKMVIVYWFE 378 (384)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~D---~~~~~~~~~gv~~~~~----~-----~~~p~~~lId~~G~i~~~~~ 378 (384)
|.+++ +....-+.. .-.++++.|.||.... + .|.=.+|||||+|+++..|-
T Consensus 197 Y~~eF-------~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~G 259 (280)
T KOG2792|consen 197 YVSEF-------HPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYG 259 (280)
T ss_pred HHHhc-------ChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhc
Confidence 88887 444443433 3378899999987651 1 35557899999999987543
No 116
>KOG2501|consensus
Probab=99.25 E-value=1.4e-11 Score=101.85 Aligned_cols=108 Identities=22% Similarity=0.218 Sum_probs=86.2
Q ss_pred cCcceeeecc-ccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhC--CcEEEEEeCCC-HHhHHHHhcCccccCCCC
Q psy17178 257 DGQLKEIKLS-DYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI--NTEVVAASVDS-HFTHLAWVNTPRKEGGLG 332 (384)
Q Consensus 257 d~~g~~~~l~-d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~--~v~vv~Is~d~-~~~~~~~~~~~~~~~~~~ 332 (384)
+.+|..+... +++||++.++|- |.|||+|+.-.|.|.++|++.++. .+.||.||.|. .+++.+|...+...
T Consensus 19 ~~~~~~~~~~~~l~gKvV~lyFs-A~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~---- 93 (157)
T KOG2501|consen 19 KQDGTEVLASEALQGKVVGLYFS-AHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGD---- 93 (157)
T ss_pred ccCCccchHhHhhCCcEEEEEEE-EEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCC----
Confidence 5578877777 579998888887 999999999999999999999864 59999999984 56777777765222
Q ss_pred CcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEE
Q psy17178 333 KLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVY 375 (384)
Q Consensus 333 ~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~ 375 (384)
-+-.|+..+...++.+.|++ .+.|+..++.++|+++-
T Consensus 94 W~~iPf~d~~~~~l~~ky~v------~~iP~l~i~~~dG~~v~ 130 (157)
T KOG2501|consen 94 WLAIPFGDDLIQKLSEKYEV------KGIPALVILKPDGTVVT 130 (157)
T ss_pred eEEecCCCHHHHHHHHhccc------CcCceeEEecCCCCEeh
Confidence 23344444455899999999 78999999999998775
No 117
>KOG2792|consensus
Probab=99.24 E-value=2.8e-11 Score=106.63 Aligned_cols=133 Identities=15% Similarity=0.184 Sum_probs=99.6
Q ss_pred ccccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhC-C--cEEEEEeCCC-
Q psy17178 49 YSKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI-N--TEVVAASVDS- 124 (384)
Q Consensus 49 ~~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~--v~vi~Vs~d~- 124 (384)
..+++|- .|+|.+. +|+.++-.||+|||++|+|..+.|..+|+.|+..|.+..++.+++ | +..++||+|+
T Consensus 114 gk~~iGG---pF~L~d~---~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPe 187 (280)
T KOG2792|consen 114 GKPAIGG---PFSLVDH---DGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPE 187 (280)
T ss_pred CCCccCC---ceEEEec---CCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcc
Confidence 3444553 5998665 999999999999999999996766669999999999999998753 3 3468999987
Q ss_pred ---HHhHHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccC---C-CCcccceeEEEEEEEecCCCcccc
Q psy17178 125 ---HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSD---Q-GPVRGSLLSTAIFVYALTSPVNGY 191 (384)
Q Consensus 125 ---~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~---~-g~~~g~~~~~~~~vid~~G~v~~~ 191 (384)
++.++++.+++... -+.+.--.+.-..+++.|.||++. + +..+=+-++-..++|||+|....+
T Consensus 188 RD~~~~~~eY~~eF~pk----llGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~ 257 (280)
T KOG2792|consen 188 RDSVEVVAEYVSEFHPK----LLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDY 257 (280)
T ss_pred cCCHHHHHHHHHhcChh----hhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehh
Confidence 56667777665222 344444455557899999999865 1 223445567788999999999764
No 118
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.21 E-value=3e-11 Score=111.62 Aligned_cols=90 Identities=17% Similarity=0.138 Sum_probs=72.1
Q ss_pred cceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeE
Q psy17178 259 QLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPL 338 (384)
Q Consensus 259 ~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (384)
..+...+++++||++||+|| ++||++|..++|.|+++++++ ++.|++||+|.... ..||.
T Consensus 155 ~~~~~~l~~l~~k~~Lv~F~-AswCp~C~~~~P~L~~la~~y---g~~Vi~VsvD~~~~----------------~~fp~ 214 (271)
T TIGR02740 155 KQKDRVMKDLAKKSGLFFFF-KSDCPYCHQQAPILQAFEDRY---GIEVLPVSVDGGPL----------------PGFPN 214 (271)
T ss_pred HHHHHHHHHhcCCeEEEEEE-CCCCccHHHHhHHHHHHHHHc---CcEEEEEeCCCCcc----------------ccCCc
Confidence 34457889999999999999 999999999999999999887 58999999985321 12454
Q ss_pred EecCchHHHHHhCceecCCCceeeEEEEEeCC-ceEEE
Q psy17178 339 LSDLTHKISLDYGVYLSDQGHTLDKYCLECYK-MVIVY 375 (384)
Q Consensus 339 ~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~-G~i~~ 375 (384)
. +.+..+++.||+ ..+|++||+|++ |+|..
T Consensus 215 ~-~~d~~la~~~gV------~~vPtl~Lv~~~~~~v~~ 245 (271)
T TIGR02740 215 A-RPDAGQAQQLKI------RTVPAVFLADPDPNQFTP 245 (271)
T ss_pred c-cCCHHHHHHcCC------CcCCeEEEEECCCCEEEE
Confidence 4 345567899999 789999999995 55544
No 119
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.21 E-value=9e-11 Score=92.60 Aligned_cols=79 Identities=8% Similarity=-0.068 Sum_probs=62.4
Q ss_pred ccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHH
Q psy17178 267 DYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI 346 (384)
Q Consensus 267 d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 346 (384)
+.+||++||+|| ++||++|+.++|.|+++++++ .++.++.|+.|..... ..+
T Consensus 12 ~~~~k~vvv~F~-a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d~~~~~-------------------------~~l 63 (103)
T cd02985 12 KAKGRLVVLEFA-LKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGDENDST-------------------------MEL 63 (103)
T ss_pred HcCCCEEEEEEE-CCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECCCChHH-------------------------HHH
Confidence 346999999999 999999999999999999988 5688999988753211 245
Q ss_pred HHHhCceecCCCceeeEEEEEeCCceEEEEEecC
Q psy17178 347 SLDYGVYLSDQGHTLDKYCLECYKMVIVYWFERG 380 (384)
Q Consensus 347 ~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~ 380 (384)
+++|++ ...|+++++ ++|+++..+...
T Consensus 64 ~~~~~V------~~~Pt~~~~-~~G~~v~~~~G~ 90 (103)
T cd02985 64 CRREKI------IEVPHFLFY-KDGEKIHEEEGI 90 (103)
T ss_pred HHHcCC------CcCCEEEEE-eCCeEEEEEeCC
Confidence 677888 678875444 899999877643
No 120
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.20 E-value=3.1e-11 Score=100.93 Aligned_cols=87 Identities=14% Similarity=0.032 Sum_probs=68.6
Q ss_pred cceeeeccc--cCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcce
Q psy17178 259 QLKEIKLSD--YYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKI 336 (384)
Q Consensus 259 ~g~~~~l~d--~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~ 336 (384)
++....+++ .+||++||+|| ++||++|..++|.+.++++++++ .+.++.|++|...
T Consensus 7 ~~~~~~~~~a~~~gk~vvV~F~-A~WC~~C~~~~p~l~~l~~~~~~-~~~~v~v~vd~~~-------------------- 64 (142)
T cd02950 7 AASSTPPEVALSNGKPTLVEFY-ADWCTVCQEMAPDVAKLKQKYGD-QVNFVMLNVDNPK-------------------- 64 (142)
T ss_pred hhccCCHHHHHhCCCEEEEEEE-CCcCHHHHHhHHHHHHHHHHhcc-CeeEEEEEcCCcc--------------------
Confidence 344444444 47899999999 99999999999999999999864 4788999887421
Q ss_pred eEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178 337 PLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER 379 (384)
Q Consensus 337 ~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~ 379 (384)
...+.++|++ ..+|+++++|++|+++..+..
T Consensus 65 ------~~~~~~~~~V------~~iPt~v~~~~~G~~v~~~~G 95 (142)
T cd02950 65 ------WLPEIDRYRV------DGIPHFVFLDREGNEEGQSIG 95 (142)
T ss_pred ------cHHHHHHcCC------CCCCEEEEECCCCCEEEEEeC
Confidence 0134678898 689999999999999986653
No 121
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.07 E-value=1.5e-10 Score=107.11 Aligned_cols=110 Identities=16% Similarity=0.160 Sum_probs=79.2
Q ss_pred CCCCccEEEeeec--CccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhc
Q psy17178 55 KPAPFWQGTAVVD--GQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWV 132 (384)
Q Consensus 55 ~~aP~f~l~~~~~--~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~ 132 (384)
.+.+.+....... ...+...+++++|+++||+|| ++|||+|+.++|.|+++.+++ |+.|++||+|....
T Consensus 139 ~P~~~~a~~~~~~~~~~~~~~~l~~l~~k~~Lv~F~-AswCp~C~~~~P~L~~la~~y---g~~Vi~VsvD~~~~----- 209 (271)
T TIGR02740 139 RPVSTLALDAHDTTAKKQKDRVMKDLAKKSGLFFFF-KSDCPYCHQQAPILQAFEDRY---GIEVLPVSVDGGPL----- 209 (271)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEE-CCCCccHHHHhHHHHHHHHHc---CcEEEEEeCCCCcc-----
Confidence 3556665543311 123458899999999999999 899999999999999999886 68999999986321
Q ss_pred cCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecC-CCcccccceee
Q psy17178 133 NTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALT-SPVNGYAGGAL 196 (384)
Q Consensus 133 ~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~-G~v~~~~~g~~ 196 (384)
. .||.+ +.+..+++.||| ...|++|++|++ |+|..+..|.+
T Consensus 210 ~-----------~fp~~-~~d~~la~~~gV-----------~~vPtl~Lv~~~~~~v~~v~~G~~ 251 (271)
T TIGR02740 210 P-----------GFPNA-RPDAGQAQQLKI-----------RTVPAVFLADPDPNQFTPIGFGVM 251 (271)
T ss_pred c-----------cCCcc-cCCHHHHHHcCC-----------CcCCeEEEEECCCCEEEEEEeCCC
Confidence 1 25554 445668899998 345788999994 66654444543
No 122
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.05 E-value=7.7e-10 Score=86.72 Aligned_cols=75 Identities=16% Similarity=0.134 Sum_probs=59.0
Q ss_pred cccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchH
Q psy17178 266 SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK 345 (384)
Q Consensus 266 ~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 345 (384)
++++||+++|+|| ++||++|+.++|.++++.++++ ++.++.|..++ ....
T Consensus 14 ~~~~g~~vlV~F~-a~WC~~C~~~~p~l~~la~~~~--~~~~~~vd~~~---------------------------~~~~ 63 (100)
T cd02999 14 AFNREDYTAVLFY-ASWCPFSASFRPHFNALSSMFP--QIRHLAIEESS---------------------------IKPS 63 (100)
T ss_pred HhcCCCEEEEEEE-CCCCHHHHhHhHHHHHHHHHhc--cCceEEEECCC---------------------------CCHH
Confidence 3579999999999 9999999999999999999885 46777764431 1236
Q ss_pred HHHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178 346 ISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE 378 (384)
Q Consensus 346 ~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~ 378 (384)
+.++|++ ..+|+++++++ | .+..+.
T Consensus 64 l~~~~~V------~~~PT~~lf~~-g-~~~~~~ 88 (100)
T cd02999 64 LLSRYGV------VGFPTILLFNS-T-PRVRYN 88 (100)
T ss_pred HHHhcCC------eecCEEEEEcC-C-ceeEec
Confidence 6788999 78999999974 4 444454
No 123
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.04 E-value=1.9e-10 Score=96.22 Aligned_cols=89 Identities=17% Similarity=0.143 Sum_probs=66.6
Q ss_pred ccceEEcccc--CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccce
Q psy17178 69 QLKEIKLSDY--YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKI 146 (384)
Q Consensus 69 ~g~~~~l~~~--~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~ 146 (384)
+++...+++. +||++||+|| ++||++|+..+|.+.++++++.+ .+.++.|++|... +
T Consensus 7 ~~~~~~~~~a~~~gk~vvV~F~-A~WC~~C~~~~p~l~~l~~~~~~-~~~~v~v~vd~~~----~--------------- 65 (142)
T cd02950 7 AASSTPPEVALSNGKPTLVEFY-ADWCTVCQEMAPDVAKLKQKYGD-QVNFVMLNVDNPK----W--------------- 65 (142)
T ss_pred hhccCCHHHHHhCCCEEEEEEE-CCcCHHHHHhHHHHHHHHHHhcc-CeeEEEEEcCCcc----c---------------
Confidence 4444555544 6899999999 99999999999999999999864 4788888876421 0
Q ss_pred eEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178 147 PLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL 196 (384)
Q Consensus 147 p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~ 196 (384)
.++++.|+| ...|+++++|++|+++....|..
T Consensus 66 -------~~~~~~~~V-----------~~iPt~v~~~~~G~~v~~~~G~~ 97 (142)
T cd02950 66 -------LPEIDRYRV-----------DGIPHFVFLDREGNEEGQSIGLQ 97 (142)
T ss_pred -------HHHHHHcCC-----------CCCCEEEEECCCCCEEEEEeCCC
Confidence 134567887 23457789999999987766644
No 124
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=5.4e-09 Score=84.80 Aligned_cols=136 Identities=21% Similarity=0.304 Sum_probs=105.7
Q ss_pred CCCCCCCCceeeeEE---cCcc-eeeecccc-CCCeEEEEEEeCCCCcCchH-hHHHHHHHHHHHHhCCc-EEEEEeCCC
Q psy17178 242 FVSKPAPFWQGTAVV---DGQL-KEIKLSDY-YGKYLVFFFYPLDFTFVCPT-EILAFNDRLEEFHQINT-EVVAASVDS 314 (384)
Q Consensus 242 ~~g~~~P~f~l~~l~---d~~g-~~~~l~d~-~Gk~vvl~F~~a~~c~~C~~-~~~~l~~l~~~~~~~~v-~vv~Is~d~ 314 (384)
.+|+.+|..++.+-. +..| ..++..++ +||.++|+--|+..+|.|.. ++|.+.+++++++++|| .|+.||+|+
T Consensus 4 ~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVND 83 (165)
T COG0678 4 MVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVND 83 (165)
T ss_pred ccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeCc
Confidence 578999998887421 1122 34666664 89999999999999999987 89999999999999998 688999999
Q ss_pred HHhHHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCC--C--c-eeeEEEEEeCCceEEEEEecCCCC
Q psy17178 315 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ--G--H-TLDKYCLECYKMVIVYWFERGNCD 383 (384)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~--~--~-~~p~~~lId~~G~i~~~~~~~~~d 383 (384)
+..+.+|.+..... + +..++.|.++++.+..|+..... | . ..+..-|+ +||+|.+.+.+.+.|
T Consensus 84 ~FVm~AWak~~g~~----~-~I~fi~Dg~geFTk~~Gm~~d~~~~g~G~RS~RYsmvV-~nGvV~~~~iE~p~~ 151 (165)
T COG0678 84 AFVMNAWAKSQGGE----G-NIKFIPDGNGEFTKAMGMLVDKSDLGFGVRSWRYSMVV-ENGVVEKLFIEPPGD 151 (165)
T ss_pred HHHHHHHHHhcCCC----c-cEEEecCCCchhhhhcCceeecccCCcceeeeeEEEEE-eCCeEEEEEecCCCC
Confidence 99999999876221 2 78899999999999999865443 2 2 23334455 599999988876544
No 125
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=4.5e-09 Score=85.91 Aligned_cols=123 Identities=15% Similarity=0.103 Sum_probs=89.2
Q ss_pred CCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeC--------CCHHh
Q psy17178 246 PAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV--------DSHFT 317 (384)
Q Consensus 246 ~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~--------d~~~~ 317 (384)
.+-+|+.+++ +|++++|++|+||++||.=- |+-|..-+ +...|+.||++|+++|+.|+++-- ++.++
T Consensus 4 ~~yd~~~~~~---~G~~~~l~~~~GkVlLIVNt-ASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eE 78 (162)
T COG0386 4 SIYDFSVKDI---DGEPVSLSDYKGKVLLIVNT-ASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEE 78 (162)
T ss_pred ccccceeecc---CCCCccHHHhCCcEEEEEEc-ccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHH
Confidence 3567888855 99999999999998777766 88888665 888899999999999999999953 45678
Q ss_pred HHHHhcCccccCCCCCcceeEEecCc------hHHHHHhCceecC--CC--ce-eeEEEEEeCCceEEEEEec
Q psy17178 318 HLAWVNTPRKEGGLGKLKIPLLSDLT------HKISLDYGVYLSD--QG--HT-LDKYCLECYKMVIVYWFER 379 (384)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~D~~------~~~~~~~gv~~~~--~~--~~-~p~~~lId~~G~i~~~~~~ 379 (384)
+++|+.. ++ +.+||++.--+ +.+.+.+.-.... .+ .. .=+-||||++|+|+.+|..
T Consensus 79 I~~fC~~--~Y----gVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p 145 (162)
T COG0386 79 IAKFCQL--NY----GVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSP 145 (162)
T ss_pred HHHHHHh--cc----CceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCC
Confidence 8888875 23 89999986422 3333333211100 00 11 1246999999999998863
No 126
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.98 E-value=1.3e-09 Score=89.16 Aligned_cols=88 Identities=11% Similarity=-0.019 Sum_probs=66.2
Q ss_pred CC-CeEEEEEEeCCCCcCchHhHHHHH---HHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCch
Q psy17178 269 YG-KYLVFFFYPLDFTFVCPTEILAFN---DRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTH 344 (384)
Q Consensus 269 ~G-k~vvl~F~~a~~c~~C~~~~~~l~---~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 344 (384)
.| |+++|+|| ++||++|....+.+. ++.+.++ .++.++.|++|.......| ........
T Consensus 12 ~~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~~i~~d~~~~~~~~---------------~~~~~~~~ 74 (125)
T cd02951 12 DGKKPLLLLFS-QPGCPYCDKLKRDYLNDPAVQAYIR-AHFVVVYINIDGDKEVTDF---------------DGEALSEK 74 (125)
T ss_pred cCCCcEEEEEe-CCCCHHHHHHHHHhcCcHHHHHHHH-hheEEEEEEccCCceeecc---------------CCCCccHH
Confidence 67 89999999 999999999999885 5555555 4688889988754322221 11112457
Q ss_pred HHHHHhCceecCCCceeeEEEEEeCC-ceEEEEEec
Q psy17178 345 KISLDYGVYLSDQGHTLDKYCLECYK-MVIVYWFER 379 (384)
Q Consensus 345 ~~~~~~gv~~~~~~~~~p~~~lId~~-G~i~~~~~~ 379 (384)
.++++|++ ..+|+++++|++ |+++..+..
T Consensus 75 ~l~~~~~v------~~~Pt~~~~~~~gg~~~~~~~G 104 (125)
T cd02951 75 ELARKYRV------RFTPTVIFLDPEGGKEIARLPG 104 (125)
T ss_pred HHHHHcCC------ccccEEEEEcCCCCceeEEecC
Confidence 88999999 689999999999 899986653
No 127
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.97 E-value=1.9e-09 Score=84.95 Aligned_cols=81 Identities=9% Similarity=-0.024 Sum_probs=60.7
Q ss_pred cccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcch
Q psy17178 76 SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK 155 (384)
Q Consensus 76 ~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~ 155 (384)
++.+||++||+|| ++||++|+..+|.|.++.+++ .++.++.|+.|..... .+
T Consensus 11 ~~~~~k~vvv~F~-a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d~~~~~-------------------------~~ 62 (103)
T cd02985 11 KKAKGRLVVLEFA-LKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGDENDST-------------------------ME 62 (103)
T ss_pred HHcCCCEEEEEEE-CCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECCCChHH-------------------------HH
Confidence 3456899999999 999999999999999999988 5688888887752211 24
Q ss_pred hHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178 156 ISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL 196 (384)
Q Consensus 156 ~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~ 196 (384)
+++.|+| .+++ + |++.++|++.....|..
T Consensus 63 l~~~~~V--------~~~P---t-~~~~~~G~~v~~~~G~~ 91 (103)
T cd02985 63 LCRREKI--------IEVP---H-FLFYKDGEKIHEEEGIG 91 (103)
T ss_pred HHHHcCC--------CcCC---E-EEEEeCCeEEEEEeCCC
Confidence 5666777 3333 3 55568999887777754
No 128
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.93 E-value=4.7e-09 Score=82.59 Aligned_cols=77 Identities=14% Similarity=0.056 Sum_probs=59.0
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL 348 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 348 (384)
.|++++|+|| ++||++|+...|.|+++++++++..+.++.++.|.+ .+++
T Consensus 16 ~~~~vvv~F~-a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~~-----------------------------~~~~ 65 (102)
T cd02948 16 NKGLTVVDVY-QEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADTI-----------------------------DTLK 65 (102)
T ss_pred cCCeEEEEEE-CCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCCH-----------------------------HHHH
Confidence 5889999999 999999999999999999988755567777776621 2346
Q ss_pred HhCceecCCCceeeEEEEEeCCceEEEEEecCCC
Q psy17178 349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFERGNC 382 (384)
Q Consensus 349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~~~ 382 (384)
+|++ ...|+ +++-++|+++......+.
T Consensus 66 ~~~v------~~~Pt-~~~~~~g~~~~~~~G~~~ 92 (102)
T cd02948 66 RYRG------KCEPT-FLFYKNGELVAVIRGANA 92 (102)
T ss_pred HcCC------CcCcE-EEEEECCEEEEEEecCCh
Confidence 7888 67785 455569998886665443
No 129
>KOG2501|consensus
Probab=98.92 E-value=4e-09 Score=87.35 Aligned_cols=102 Identities=22% Similarity=0.192 Sum_probs=76.5
Q ss_pred ccceEEcc-ccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhC--CcEEEEEeCCC-HHhHHhhccCccccCCCCcc
Q psy17178 69 QLKEIKLS-DYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI--NTEVVAASVDS-HFTHLAWVNTPRKEGGLGKL 144 (384)
Q Consensus 69 ~g~~~~l~-~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~--~v~vi~Vs~d~-~~~~~~~~~~~~~~~~~~~~ 144 (384)
+|..+..+ +++||.+.++|- +.|||+|+.--|.|.++|++.++. .++||.||.|. .+....+.+ ++ +.
T Consensus 21 ~~~~~~~~~~l~gKvV~lyFs-A~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~---~~----~~ 92 (157)
T KOG2501|consen 21 DGTEVLASEALQGKVVGLYFS-AHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYML---EH----HG 92 (157)
T ss_pred CCccchHhHhhCCcEEEEEEE-EEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHH---hc----CC
Confidence 77777766 668987666666 999999999999999999999864 48999999987 445555554 33 45
Q ss_pred ceeEEe---eCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcc
Q psy17178 145 KIPLLS---DLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVN 189 (384)
Q Consensus 145 ~~p~l~---D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~ 189 (384)
+|..+. |...++.+.|+| -..|+..++.++|.+.
T Consensus 93 ~W~~iPf~d~~~~~l~~ky~v-----------~~iP~l~i~~~dG~~v 129 (157)
T KOG2501|consen 93 DWLAIPFGDDLIQKLSEKYEV-----------KGIPALVILKPDGTVV 129 (157)
T ss_pred CeEEecCCCHHHHHHHHhccc-----------CcCceeEEecCCCCEe
Confidence 665553 334788888888 2345677999999764
No 130
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=5.7e-09 Score=85.31 Aligned_cols=129 Identities=14% Similarity=0.120 Sum_probs=89.4
Q ss_pred CCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC--------CHHhH
Q psy17178 57 APFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD--------SHFTH 128 (384)
Q Consensus 57 aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d--------~~~~~ 128 (384)
+-+|+..+. +|++++|++|+||+++|.=. |+-|..-+ +...|+.+|++|+++|++|++.-.+ +.+..
T Consensus 5 ~yd~~~~~~---~G~~~~l~~~~GkVlLIVNt-ASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI 79 (162)
T COG0386 5 IYDFSVKDI---DGEPVSLSDYKGKVLLIVNT-ASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEI 79 (162)
T ss_pred cccceeecc---CCCCccHHHhCCcEEEEEEc-ccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHH
Confidence 457888877 99999999999998777666 99999655 8999999999999999999999653 35677
Q ss_pred HhhccCccccCCCCccceeEEee--Ccch-hHHhhcCcccCC-CC--cccceeEEEEEEEecCCCcccccceee
Q psy17178 129 LAWVNTPRKEGGLGKLKIPLLSD--LTHK-ISLDYGVYLSDQ-GP--VRGSLLSTAIFVYALTSPVNGYAGGAL 196 (384)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~p~l~D--~~~~-~~~~ygv~~~~~-g~--~~g~~~~~~~~vid~~G~v~~~~~g~~ 196 (384)
++|.+. ++ +.+||++.- ..|+ ..=.|.-..... |. ...+.-.-.=|+||++|+|....+-..
T Consensus 80 ~~fC~~--~Y----gVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t 147 (162)
T COG0386 80 AKFCQL--NY----GVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKT 147 (162)
T ss_pred HHHHHh--cc----CceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCC
Confidence 888874 34 889999863 2221 111222222111 11 011111235689999999986555444
No 131
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.90 E-value=1.2e-08 Score=81.66 Aligned_cols=75 Identities=9% Similarity=0.260 Sum_probs=61.7
Q ss_pred cCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHH
Q psy17178 268 YYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKIS 347 (384)
Q Consensus 268 ~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 347 (384)
.+||+++|+|| ++||++|....|.+.++.+++++.++.+..|+.|. +..+.
T Consensus 22 ~~~~~vlV~F~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~----------------------------~~~l~ 72 (111)
T cd02963 22 SFKKPYLIKIT-SDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH----------------------------ERRLA 72 (111)
T ss_pred cCCCeEEEEEE-CCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc----------------------------cHHHH
Confidence 46899999999 99999999999999999999987678887777662 13457
Q ss_pred HHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178 348 LDYGVYLSDQGHTLDKYCLECYKMVIVYWFE 378 (384)
Q Consensus 348 ~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~ 378 (384)
++||+ ..+|+++++. +|+++..+.
T Consensus 73 ~~~~V------~~~Pt~~i~~-~g~~~~~~~ 96 (111)
T cd02963 73 RKLGA------HSVPAIVGII-NGQVTFYHD 96 (111)
T ss_pred HHcCC------ccCCEEEEEE-CCEEEEEec
Confidence 78898 6899999885 888877443
No 132
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.87 E-value=1.3e-08 Score=78.84 Aligned_cols=74 Identities=16% Similarity=0.128 Sum_probs=59.7
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL 348 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 348 (384)
+|++++|+|| ++||++|....|.++++.+.+++ .+.++.|+.|. ...+.+
T Consensus 11 ~~~~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~----------------------------~~~l~~ 60 (96)
T cd02956 11 TQVPVVVDFW-APRSPPSKELLPLLERLAEEYQG-QFVLAKVNCDA----------------------------QPQIAQ 60 (96)
T ss_pred CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhCC-cEEEEEEeccC----------------------------CHHHHH
Confidence 5789999999 99999999999999999998854 36666666542 235677
Q ss_pred HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178 349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER 379 (384)
Q Consensus 349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~ 379 (384)
+|++ ..+|++++++ +|+++..+..
T Consensus 61 ~~~i------~~~Pt~~~~~-~g~~~~~~~g 84 (96)
T cd02956 61 QFGV------QALPTVYLFA-AGQPVDGFQG 84 (96)
T ss_pred HcCC------CCCCEEEEEe-CCEEeeeecC
Confidence 8888 6899999997 9998876653
No 133
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.80 E-value=1.7e-08 Score=79.14 Aligned_cols=44 Identities=16% Similarity=0.141 Sum_probs=37.8
Q ss_pred cccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeC
Q psy17178 76 SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV 122 (384)
Q Consensus 76 ~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~ 122 (384)
++++||+++|.|| ++||++|+..+|.+.++.++++ ++.++.|..
T Consensus 14 ~~~~g~~vlV~F~-a~WC~~C~~~~p~l~~la~~~~--~~~~~~vd~ 57 (100)
T cd02999 14 AFNREDYTAVLFY-ASWCPFSASFRPHFNALSSMFP--QIRHLAIEE 57 (100)
T ss_pred HhcCCCEEEEEEE-CCCCHHHHhHhHHHHHHHHHhc--cCceEEEEC
Confidence 3579999999999 9999999999999999999885 466666643
No 134
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.79 E-value=1.1e-08 Score=83.57 Aligned_cols=90 Identities=13% Similarity=0.074 Sum_probs=65.3
Q ss_pred CC-CeEEEEEeeCCCCCCchHHHHHHH---HhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcc
Q psy17178 79 YG-KYLVFFFYPLDFTFVCPTEILAFN---DRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTH 154 (384)
Q Consensus 79 ~g-k~vvl~f~~~~~cp~C~~~~~~l~---~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~ 154 (384)
.| |+++|+|| ++||++|+...+.+. ++.+.++ .++.++.|+.|.......|.. ......
T Consensus 12 ~~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~~i~~d~~~~~~~~~~---------------~~~~~~ 74 (125)
T cd02951 12 DGKKPLLLLFS-QPGCPYCDKLKRDYLNDPAVQAYIR-AHFVVVYINIDGDKEVTDFDG---------------EALSEK 74 (125)
T ss_pred cCCCcEEEEEe-CCCCHHHHHHHHHhcCcHHHHHHHH-hheEEEEEEccCCceeeccCC---------------CCccHH
Confidence 57 89999999 999999999998875 4555554 468888998876433322211 112457
Q ss_pred hhHHhhcCcccCCCCcccceeEEEEEEEecC-CCcccccceee
Q psy17178 155 KISLDYGVYLSDQGPVRGSLLSTAIFVYALT-SPVNGYAGGAL 196 (384)
Q Consensus 155 ~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~-G~v~~~~~g~~ 196 (384)
+++++|++ ...|+++++|++ |++.....|..
T Consensus 75 ~l~~~~~v-----------~~~Pt~~~~~~~gg~~~~~~~G~~ 106 (125)
T cd02951 75 ELARKYRV-----------RFTPTVIFLDPEGGKEIARLPGYL 106 (125)
T ss_pred HHHHHcCC-----------ccccEEEEEcCCCCceeEEecCCC
Confidence 88999998 345788999999 89877666654
No 135
>KOG0541|consensus
Probab=98.79 E-value=7.4e-08 Score=78.71 Aligned_cols=136 Identities=18% Similarity=0.262 Sum_probs=102.9
Q ss_pred CCCCCCCCCceeeeEEcCc----ceeeecccc-CCCeEEEEEEeCCCCcCc-hHhHHHHHHHHHHHHhCCc-EEEEEeCC
Q psy17178 241 PFVSKPAPFWQGTAVVDGQ----LKEIKLSDY-YGKYLVFFFYPLDFTFVC-PTEILAFNDRLEEFHQINT-EVVAASVD 313 (384)
Q Consensus 241 ~~~g~~~P~f~l~~l~d~~----g~~~~l~d~-~Gk~vvl~F~~a~~c~~C-~~~~~~l~~l~~~~~~~~v-~vv~Is~d 313 (384)
..+|+..|+-+.....|.. +.+++++++ +||.++|+--|+..+|.| ..++|-+-.-.++++.+|+ +|+.||+|
T Consensus 9 i~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicvSVn 88 (171)
T KOG0541|consen 9 IAVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICVSVN 88 (171)
T ss_pred ccccCccccccchhhccCccccccceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEEecC
Confidence 4578999983222111211 227889886 899999999999999995 6789999999999999998 57899999
Q ss_pred CHHhHHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCC----CceeeEEEEEeCCceEEEEEecCC
Q psy17178 314 SHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ----GHTLDKYCLECYKMVIVYWFERGN 381 (384)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~----~~~~p~~~lId~~G~i~~~~~~~~ 381 (384)
+|..+++|.+.+.+ .-...++.|+.++..+.+|+...-. |....+.-++-.||+|.+.....+
T Consensus 89 DpFv~~aW~k~~g~-----~~~V~f~aD~~g~ftk~lgleld~~d~~~g~RS~R~a~vvengkV~~~nvE~~ 155 (171)
T KOG0541|consen 89 DPFVMKAWAKSLGA-----NDHVKFVADPAGEFTKSLGLELDLSDKLLGVRSRRYALVVENGKVTVVNVEEG 155 (171)
T ss_pred cHHHHHHHHhhcCc-----cceEEEEecCCCceeeeccceeeeccccCccccccEEEEEeCCeEEEEEeccC
Confidence 99999999998832 3467889999999999998853311 233445555556999999776654
No 136
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.75 E-value=2.6e-08 Score=78.52 Aligned_cols=78 Identities=12% Similarity=0.090 Sum_probs=60.1
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHH---HHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchH
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK 345 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l---~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 345 (384)
.||+++|+|| ++||++|....+.+ .++.+.+++ ++.++.|+.+..+. ....
T Consensus 10 ~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~------------------------~~~~ 63 (104)
T cd02953 10 QGKPVFVDFT-ADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDP------------------------EITA 63 (104)
T ss_pred cCCeEEEEEE-cchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCH------------------------HHHH
Confidence 5799999999 99999999998887 577777765 78888887653210 0135
Q ss_pred HHHHhCceecCCCceeeEEEEEeC-CceEEEEEe
Q psy17178 346 ISLDYGVYLSDQGHTLDKYCLECY-KMVIVYWFE 378 (384)
Q Consensus 346 ~~~~~gv~~~~~~~~~p~~~lId~-~G~i~~~~~ 378 (384)
+.++|++ ..+|+++++++ +|+++.++.
T Consensus 64 ~~~~~~i------~~~Pti~~~~~~~g~~~~~~~ 91 (104)
T cd02953 64 LLKRFGV------FGPPTYLFYGPGGEPEPLRLP 91 (104)
T ss_pred HHHHcCC------CCCCEEEEECCCCCCCCcccc
Confidence 6678888 68999999998 899887554
No 137
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.72 E-value=1e-07 Score=75.75 Aligned_cols=73 Identities=12% Similarity=0.038 Sum_probs=57.2
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL 348 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 348 (384)
.++++||.|| |+||++|+...|.|.++.+++.+. +.++-|++|. ...+++
T Consensus 13 ~~~~vVV~F~-A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDvD~----------------------------~~~la~ 62 (114)
T cd02954 13 EEKVVVIRFG-RDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDIDE----------------------------VPDFNK 62 (114)
T ss_pred CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHccCc-eEEEEEECCC----------------------------CHHHHH
Confidence 4678999999 999999999999999999988533 5677777663 235567
Q ss_pred HhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178 349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFE 378 (384)
Q Consensus 349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~ 378 (384)
.|++ ...|+.+++. +|+++.+..
T Consensus 63 ~~~V------~~iPTf~~fk-~G~~v~~~~ 85 (114)
T cd02954 63 MYEL------YDPPTVMFFF-RNKHMKIDL 85 (114)
T ss_pred HcCC------CCCCEEEEEE-CCEEEEEEc
Confidence 7888 6788766664 888888654
No 138
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.71 E-value=6.4e-08 Score=77.06 Aligned_cols=78 Identities=8% Similarity=0.105 Sum_probs=60.5
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL 348 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 348 (384)
+||+++|.|| ++||++|+...|.+.++.+++++.++.+..|..|... ..+.+
T Consensus 20 ~~k~vlv~f~-a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~---------------------------~~~~~ 71 (109)
T cd02993 20 RNQSTLVVLY-APWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQ---------------------------REFAK 71 (109)
T ss_pred cCCCEEEEEE-CCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccc---------------------------hhhHH
Confidence 5789999999 9999999999999999999998767888888877410 11222
Q ss_pred -HhCceecCCCceeeEEEEEeCCceEEEEEecC
Q psy17178 349 -DYGVYLSDQGHTLDKYCLECYKMVIVYWFERG 380 (384)
Q Consensus 349 -~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~ 380 (384)
.|++ ..+|++++++++++....|..+
T Consensus 72 ~~~~v------~~~Pti~~f~~~~~~~~~y~g~ 98 (109)
T cd02993 72 EELQL------KSFPTILFFPKNSRQPIKYPSE 98 (109)
T ss_pred hhcCC------CcCCEEEEEcCCCCCceeccCC
Confidence 4777 6788888888877766666543
No 139
>PRK09381 trxA thioredoxin; Provisional
Probab=98.70 E-value=8.2e-08 Score=76.33 Aligned_cols=74 Identities=11% Similarity=0.148 Sum_probs=59.1
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL 348 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 348 (384)
.+++++|+|| ++|||+|....|.++++.+++++ ++.+..|+.|.. ..+.+
T Consensus 20 ~~~~vvv~f~-~~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~~~----------------------------~~~~~ 69 (109)
T PRK09381 20 ADGAILVDFW-AEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQN----------------------------PGTAP 69 (109)
T ss_pred CCCeEEEEEE-CCCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECCCC----------------------------hhHHH
Confidence 3678999999 99999999999999999999864 477888776531 12456
Q ss_pred HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178 349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER 379 (384)
Q Consensus 349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~ 379 (384)
.|++ ...|+++++ ++|+++..+..
T Consensus 70 ~~~v------~~~Pt~~~~-~~G~~~~~~~G 93 (109)
T PRK09381 70 KYGI------RGIPTLLLF-KNGEVAATKVG 93 (109)
T ss_pred hCCC------CcCCEEEEE-eCCeEEEEecC
Confidence 7888 678988888 59999986653
No 140
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.69 E-value=1.7e-08 Score=80.67 Aligned_cols=94 Identities=15% Similarity=0.099 Sum_probs=64.0
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHH--hCCcEEEEEeCCCHHh-HHHHhcCccccCCCCCcceeEEecCchH
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH--QINTEVVAASVDSHFT-HLAWVNTPRKEGGLGKLKIPLLSDLTHK 345 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~--~~~v~vv~Is~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 345 (384)
+||+++++|| +.|||.|....+.+.+..+--. +.++.++.++.+.... ...+.+.. +. +.+.....+
T Consensus 4 ~~k~~v~~F~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~~~~~~ 73 (112)
T PF13098_consen 4 NGKPIVVVFT-DPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFD-------GQ--KNVRLSNKE 73 (112)
T ss_dssp TSSEEEEEEE--TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHT-------CH--SSCHHHHHH
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccc-------cc--hhhhHHHHH
Confidence 6899999999 9999999988888876544221 2368889998876543 33444422 22 111123358
Q ss_pred HHHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178 346 ISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE 378 (384)
Q Consensus 346 ~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~ 378 (384)
+.+.||+ ..+|+++++|++|++++++.
T Consensus 74 l~~~~~v------~gtPt~~~~d~~G~~v~~~~ 100 (112)
T PF13098_consen 74 LAQRYGV------NGTPTIVFLDKDGKIVYRIP 100 (112)
T ss_dssp HHHHTT--------SSSEEEECTTTSCEEEEEE
T ss_pred HHHHcCC------CccCEEEEEcCCCCEEEEec
Confidence 9999999 78999999999999998665
No 141
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.66 E-value=8.1e-08 Score=76.76 Aligned_cols=46 Identities=11% Similarity=0.268 Sum_probs=39.9
Q ss_pred ccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178 77 DYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD 123 (384)
Q Consensus 77 ~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d 123 (384)
...|++++|.|| ++||++|+...|.+.++.+++++.++.+..|+.|
T Consensus 21 ~~~~~~vlV~F~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d 66 (111)
T cd02963 21 KSFKKPYLIKIT-SDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAG 66 (111)
T ss_pred ccCCCeEEEEEE-CCccHhHHHhhHHHHHHHHHHHhcCceEEEEecc
Confidence 346899999999 9999999999999999999997667777777655
No 142
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.65 E-value=1.7e-07 Score=84.06 Aligned_cols=45 Identities=9% Similarity=0.022 Sum_probs=31.3
Q ss_pred ccCCCeEEEEEee--CCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178 77 DYYGKYLVFFFYP--LDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD 123 (384)
Q Consensus 77 ~~~gk~vvl~f~~--~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d 123 (384)
..++...++.|.. +.|||+|+...|.+.++.+++. ++++..+.+|
T Consensus 16 ~~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~--~~~i~~v~vd 62 (215)
T TIGR02187 16 ELKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP--KLKLEIYDFD 62 (215)
T ss_pred hcCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC--CceEEEEecC
Confidence 3454555666773 3999999999999999988773 3454444444
No 143
>PTZ00051 thioredoxin; Provisional
Probab=98.63 E-value=2.4e-07 Score=71.98 Aligned_cols=75 Identities=12% Similarity=0.189 Sum_probs=57.9
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL 348 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 348 (384)
.+++++|+|| ++||++|+...+.++++.+++. ++.++.|+.+. ...+.+
T Consensus 17 ~~~~vli~f~-~~~C~~C~~~~~~l~~l~~~~~--~~~~~~vd~~~----------------------------~~~~~~ 65 (98)
T PTZ00051 17 QNELVIVDFY-AEWCGPCKRIAPFYEECSKEYT--KMVFVKVDVDE----------------------------LSEVAE 65 (98)
T ss_pred cCCeEEEEEE-CCCCHHHHHHhHHHHHHHHHcC--CcEEEEEECcc----------------------------hHHHHH
Confidence 4688999999 9999999999999999998663 46677665431 235678
Q ss_pred HhCceecCCCceeeEEEEEeCCceEEEEEecCC
Q psy17178 349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFERGN 381 (384)
Q Consensus 349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~~ 381 (384)
+|++ ...|+++ +.++|+++..+....
T Consensus 66 ~~~v------~~~Pt~~-~~~~g~~~~~~~G~~ 91 (98)
T PTZ00051 66 KENI------TSMPTFK-VFKNGSVVDTLLGAN 91 (98)
T ss_pred HCCC------ceeeEEE-EEeCCeEEEEEeCCC
Confidence 8988 6788755 447999998776543
No 144
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.62 E-value=9.6e-08 Score=74.84 Aligned_cols=73 Identities=11% Similarity=0.070 Sum_probs=55.6
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL 348 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 348 (384)
.+++++|+|| ++||++|+...|.+.++.+++++ .+.+..|+.|.. ..+.+
T Consensus 17 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~a~~~~~-~~~~~~vd~~~~----------------------------~~~~~ 66 (101)
T cd03003 17 SGEIWFVNFY-SPRCSHCHDLAPTWREFAKEMDG-VIRIGAVNCGDD----------------------------RMLCR 66 (101)
T ss_pred CCCeEEEEEE-CCCChHHHHhHHHHHHHHHHhcC-ceEEEEEeCCcc----------------------------HHHHH
Confidence 5689999999 99999999999999999999864 377777777632 23456
Q ss_pred HhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178 349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFE 378 (384)
Q Consensus 349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~ 378 (384)
+|++ ..+|+.+++ ++|+....+.
T Consensus 67 ~~~v------~~~Pt~~~~-~~g~~~~~~~ 89 (101)
T cd03003 67 SQGV------NSYPSLYVF-PSGMNPEKYY 89 (101)
T ss_pred HcCC------CccCEEEEE-cCCCCcccCC
Confidence 6777 577777666 5777665444
No 145
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.62 E-value=6.1e-08 Score=78.18 Aligned_cols=50 Identities=18% Similarity=0.234 Sum_probs=38.2
Q ss_pred eeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy17178 263 IKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 314 (384)
Q Consensus 263 ~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~ 314 (384)
+..+..+||+++|+|| ++||++|+...|.+.+..+... .+..++.|.+|.
T Consensus 12 l~~A~~~~kpVlV~F~-a~WC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~ 61 (117)
T cd02959 12 IKEAKDSGKPLMLLIH-KTWCGACKALKPKFAESKEISE-LSHNFVMVNLED 61 (117)
T ss_pred HHHHHHcCCcEEEEEe-CCcCHHHHHHHHHHhhhHHHHh-hcCcEEEEEecC
Confidence 3444557899999999 9999999999999999766543 334566676663
No 146
>KOG1651|consensus
Probab=98.61 E-value=2.9e-07 Score=76.38 Aligned_cols=125 Identities=14% Similarity=0.095 Sum_probs=87.5
Q ss_pred CCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeC--------CCHH
Q psy17178 245 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV--------DSHF 316 (384)
Q Consensus 245 ~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~--------d~~~ 316 (384)
..+-+|+..++ +|+.++|+.|+||++||.=. |+-|..-...-.+|+.++++|+++|+.|++.-= .+.+
T Consensus 12 ~siydf~~~d~---~G~~v~l~~yrGkV~LiVNV-AS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~ 87 (171)
T KOG1651|consen 12 GSIYDFSAKDL---DGEYVSLSQYRGKVVLIVNV-ASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNE 87 (171)
T ss_pred cceeeeEEecC---CCCCccHHHhCCeEEEEEEc-ccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcH
Confidence 56778888855 99999999999998877776 898988887888999999999999999999942 3345
Q ss_pred hHHHHhcCccccCCCCCcceeEEec------CchHHHHHhCceec-CCC--ce-eeEEEEEeCCceEEEEEec
Q psy17178 317 THLAWVNTPRKEGGLGKLKIPLLSD------LTHKISLDYGVYLS-DQG--HT-LDKYCLECYKMVIVYWFER 379 (384)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~D------~~~~~~~~~gv~~~-~~~--~~-~p~~~lId~~G~i~~~~~~ 379 (384)
++..++.. ++ +..||++.- ....+.+-+.-... ..+ .. .=+-||||++|+++.+|..
T Consensus 88 Ei~~f~~~--r~----~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~p 154 (171)
T KOG1651|consen 88 EILNFVKV--RY----GAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSP 154 (171)
T ss_pred HHHHHHHh--cc----CCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCC
Confidence 66666642 22 667777642 22334333322100 001 11 1245999999999998864
No 147
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.61 E-value=2.1e-07 Score=72.82 Aligned_cols=72 Identities=14% Similarity=0.163 Sum_probs=54.4
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL 348 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 348 (384)
+|+ ++|+|| ++||++|+...|.++++.+.++..++.+..|+.|. +..+.+
T Consensus 16 ~~~-~lv~f~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~----------------------------~~~~~~ 65 (101)
T cd02994 16 EGE-WMIEFY-APWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ----------------------------EPGLSG 65 (101)
T ss_pred CCC-EEEEEE-CCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC----------------------------CHhHHH
Confidence 566 579999 99999999999999999987765566666665432 224567
Q ss_pred HhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178 349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFE 378 (384)
Q Consensus 349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~ 378 (384)
+|++ ..+|+++++ ++|++ ..+.
T Consensus 66 ~~~i------~~~Pt~~~~-~~g~~-~~~~ 87 (101)
T cd02994 66 RFFV------TALPTIYHA-KDGVF-RRYQ 87 (101)
T ss_pred HcCC------cccCEEEEe-CCCCE-EEec
Confidence 8888 688888776 78986 4344
No 148
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.61 E-value=1.7e-07 Score=78.82 Aligned_cols=46 Identities=9% Similarity=0.107 Sum_probs=40.8
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCH
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSH 315 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~ 315 (384)
++++++|+|| ++||++|....|.++++.+++.+.++.++.|+.|..
T Consensus 46 ~~~~vvV~Fy-a~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~ 91 (152)
T cd02962 46 KRVTWLVEFF-TTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF 91 (152)
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC
Confidence 4678999999 999999999999999999998766799999988753
No 149
>KOG0907|consensus
Probab=98.59 E-value=3.3e-07 Score=72.23 Aligned_cols=75 Identities=16% Similarity=0.206 Sum_probs=59.9
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL 348 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 348 (384)
.+|.+|++|+ |+||++|+...|.+.++..+|.+ +.++-|++|. . ..+++
T Consensus 20 ~~kliVvdF~-a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvde---~-------------------------~~~~~ 68 (106)
T KOG0907|consen 20 GDKLVVVDFY-ATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVDE---L-------------------------EEVAK 68 (106)
T ss_pred CCCeEEEEEE-CCCCcchhhhhhHHHHHHHHCCC--CEEEEEeccc---C-------------------------HhHHH
Confidence 3688999998 99999999999999999999964 8889998884 1 24567
Q ss_pred HhCceecCCCceeeEEEEEeCCceEEEEEecCC
Q psy17178 349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFERGN 381 (384)
Q Consensus 349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~~ 381 (384)
.|++ ...|+..++ ++|+.+..+...+
T Consensus 69 ~~~V------~~~PTf~f~-k~g~~~~~~vGa~ 94 (106)
T KOG0907|consen 69 EFNV------KAMPTFVFY-KGGEEVDEVVGAN 94 (106)
T ss_pred hcCc------eEeeEEEEE-ECCEEEEEEecCC
Confidence 7888 678877666 6888887666543
No 150
>PHA02278 thioredoxin-like protein
Probab=98.58 E-value=4.5e-07 Score=71.24 Aligned_cols=78 Identities=13% Similarity=0.020 Sum_probs=59.3
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL 348 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 348 (384)
+++++||+|| |+||++|+...|.+.++.+++. ..+.++-|++|... . | ...+++
T Consensus 13 ~~~~vvV~F~-A~WCgpCk~m~p~l~~l~~~~~-~~~~~~~vdvd~~~-----------------~------d-~~~l~~ 66 (103)
T PHA02278 13 QKKDVIVMIT-QDNCGKCEILKSVIPMFQESGD-IKKPILTLNLDAED-----------------V------D-REKAVK 66 (103)
T ss_pred CCCcEEEEEE-CCCCHHHHhHHHHHHHHHhhhc-CCceEEEEECCccc-----------------c------c-cHHHHH
Confidence 5789999999 9999999999999999987753 33678888877321 0 0 234678
Q ss_pred HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178 349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER 379 (384)
Q Consensus 349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~ 379 (384)
+|++ ...|+.++.. +|+.+.+...
T Consensus 67 ~~~I------~~iPT~i~fk-~G~~v~~~~G 90 (103)
T PHA02278 67 LFDI------MSTPVLIGYK-DGQLVKKYED 90 (103)
T ss_pred HCCC------ccccEEEEEE-CCEEEEEEeC
Confidence 8998 7888776665 8999886653
No 151
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.57 E-value=5.2e-07 Score=70.14 Aligned_cols=74 Identities=14% Similarity=0.142 Sum_probs=58.7
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL 348 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 348 (384)
.+|+++++|| ++||+.|....+.++++.+++++ ++.++.|+.|. +..+.+
T Consensus 12 ~~~~vlv~f~-a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~----------------------------~~~l~~ 61 (97)
T cd02949 12 SDRLILVLYT-SPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDE----------------------------DQEIAE 61 (97)
T ss_pred CCCeEEEEEE-CCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCC----------------------------CHHHHH
Confidence 5689999999 99999999999999999988863 46677666552 124567
Q ss_pred HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178 349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER 379 (384)
Q Consensus 349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~ 379 (384)
+|++ ..+|+.++++ +|+++..+..
T Consensus 62 ~~~v------~~vPt~~i~~-~g~~v~~~~g 85 (97)
T cd02949 62 AAGI------MGTPTVQFFK-DKELVKEISG 85 (97)
T ss_pred HCCC------eeccEEEEEE-CCeEEEEEeC
Confidence 7888 6889999996 7999876654
No 152
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.57 E-value=1.8e-07 Score=75.23 Aligned_cols=78 Identities=14% Similarity=0.132 Sum_probs=59.7
Q ss_pred CCCeEEEEEEeC-------CCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEec
Q psy17178 269 YGKYLVFFFYPL-------DFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSD 341 (384)
Q Consensus 269 ~Gk~vvl~F~~a-------~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D 341 (384)
+|++++|.|| | +||++|+...|.++++.++++ .++.++-|.+|... .| .|
T Consensus 20 ~~~~vvV~F~-A~~~~~~~~WC~pCr~~~P~l~~l~~~~~-~~v~fv~Vdvd~~~---~w------------------~d 76 (119)
T cd02952 20 EGKPIFILFY-GDKDPDGQSWCPDCVKAEPVVREALKAAP-EDCVFIYCDVGDRP---YW------------------RD 76 (119)
T ss_pred CCCeEEEEEE-ccCCCCCCCCCHhHHhhchhHHHHHHHCC-CCCEEEEEEcCCcc---cc------------------cC
Confidence 5889999999 8 999999999999999999886 35889999887532 11 13
Q ss_pred CchHHHHHhCceecCCCc-eeeEEEEEeCCceEEE
Q psy17178 342 LTHKISLDYGVYLSDQGH-TLDKYCLECYKMVIVY 375 (384)
Q Consensus 342 ~~~~~~~~~gv~~~~~~~-~~p~~~lId~~G~i~~ 375 (384)
+...+.+.|++ . .+|+.++++..++++.
T Consensus 77 ~~~~~~~~~~I------~~~iPT~~~~~~~~~l~~ 105 (119)
T cd02952 77 PNNPFRTDPKL------TTGVPTLLRWKTPQRLVE 105 (119)
T ss_pred cchhhHhccCc------ccCCCEEEEEcCCceecc
Confidence 34566777888 5 7888888876665543
No 153
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.56 E-value=2.3e-07 Score=73.55 Aligned_cols=69 Identities=14% Similarity=0.142 Sum_probs=56.0
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL 348 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 348 (384)
.|++++|+|| ++||++|....|.+.++.+++++ .+.++.|+.|.. ....+.+
T Consensus 17 ~~~~~lv~f~-a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~v~~~~~--------------------------~~~~~~~ 68 (109)
T cd03002 17 TNYTTLVEFY-APWCGHCKNLKPEYAKAAKELDG-LVQVAAVDCDED--------------------------KNKPLCG 68 (109)
T ss_pred CCCeEEEEEE-CCCCHHHHhhChHHHHHHHHhcC-CceEEEEecCcc--------------------------ccHHHHH
Confidence 4788999999 99999999999999999998863 477888887742 1245677
Q ss_pred HhCceecCCCceeeEEEEEeCCc
Q psy17178 349 DYGVYLSDQGHTLDKYCLECYKM 371 (384)
Q Consensus 349 ~~gv~~~~~~~~~p~~~lId~~G 371 (384)
+|++ ..+|+++++++++
T Consensus 69 ~~~i------~~~Pt~~~~~~~~ 85 (109)
T cd03002 69 KYGV------QGFPTLKVFRPPK 85 (109)
T ss_pred HcCC------CcCCEEEEEeCCC
Confidence 8888 6789999998776
No 154
>KOG0910|consensus
Probab=98.55 E-value=3.5e-07 Score=75.19 Aligned_cols=73 Identities=11% Similarity=0.093 Sum_probs=58.5
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL 348 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 348 (384)
.+++|+|.|| |.||.+|+...|.|+++..+|.+ .+++.-|++|. ...++.
T Consensus 60 S~~PVlVdF~-A~WCgPCk~l~P~l~~~~~~~~g-~~k~~kvdtD~----------------------------~~ela~ 109 (150)
T KOG0910|consen 60 SDVPVLVDFH-AEWCGPCKMLGPILEELVSEYAG-KFKLYKVDTDE----------------------------HPELAE 109 (150)
T ss_pred cCCCEEEEEe-cCcCccHhHhhHHHHHHHHhhcC-eEEEEEEcccc----------------------------ccchHh
Confidence 4689999999 99999999999999999999853 37777777763 234567
Q ss_pred HhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178 349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFE 378 (384)
Q Consensus 349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~ 378 (384)
.|+| ...|++++++ +|+.+-.+.
T Consensus 110 ~Y~I------~avPtvlvfk-nGe~~d~~v 132 (150)
T KOG0910|consen 110 DYEI------SAVPTVLVFK-NGEKVDRFV 132 (150)
T ss_pred hcce------eeeeEEEEEE-CCEEeeeec
Confidence 8988 6888888886 888875554
No 155
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.55 E-value=2.3e-07 Score=71.90 Aligned_cols=43 Identities=12% Similarity=0.052 Sum_probs=35.7
Q ss_pred CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178 79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD 123 (384)
Q Consensus 79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d 123 (384)
+|++++|+|| ++||++|+...|.+.++.+.+.+ .+.++.|+.|
T Consensus 11 ~~~~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~ 53 (96)
T cd02956 11 TQVPVVVDFW-APRSPPSKELLPLLERLAEEYQG-QFVLAKVNCD 53 (96)
T ss_pred CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhCC-cEEEEEEecc
Confidence 5789999999 99999999999999999988854 3556666544
No 156
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.55 E-value=2.4e-07 Score=73.02 Aligned_cols=81 Identities=15% Similarity=0.192 Sum_probs=58.7
Q ss_pred CCCeEEEEEeeCCCCCCchHHHHHH---HHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcch
Q psy17178 79 YGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK 155 (384)
Q Consensus 79 ~gk~vvl~f~~~~~cp~C~~~~~~l---~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~ 155 (384)
.||+++|.|| ++||++|+...+.+ .++.+.+++ ++.++.|+.+..+.. ..+
T Consensus 10 ~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~------------------------~~~ 63 (104)
T cd02953 10 QGKPVFVDFT-ADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPE------------------------ITA 63 (104)
T ss_pred cCCeEEEEEE-cchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHH------------------------HHH
Confidence 5789999999 99999999998877 567777765 788888876531100 124
Q ss_pred hHHhhcCcccCCCCcccceeEEEEEEEec-CCCcccccceee
Q psy17178 156 ISLDYGVYLSDQGPVRGSLLSTAIFVYAL-TSPVNGYAGGAL 196 (384)
Q Consensus 156 ~~~~ygv~~~~~g~~~g~~~~~~~~vid~-~G~v~~~~~g~~ 196 (384)
++++|++ ...|+++++++ +|++.....|..
T Consensus 64 ~~~~~~i-----------~~~Pti~~~~~~~g~~~~~~~G~~ 94 (104)
T cd02953 64 LLKRFGV-----------FGPPTYLFYGPGGEPEPLRLPGFL 94 (104)
T ss_pred HHHHcCC-----------CCCCEEEEECCCCCCCCccccccc
Confidence 5667777 23467788998 898877777755
No 157
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.55 E-value=1.6e-07 Score=73.89 Aligned_cols=44 Identities=16% Similarity=0.145 Sum_probs=37.1
Q ss_pred CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178 79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD 123 (384)
Q Consensus 79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d 123 (384)
.|++++|+|| ++||++|+..+|.|.++++++++..+.++.|+.|
T Consensus 16 ~~~~vvv~F~-a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d 59 (102)
T cd02948 16 NKGLTVVDVY-QEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD 59 (102)
T ss_pred cCCeEEEEEE-CCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC
Confidence 4789999999 9999999999999999999886555666666655
No 158
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.55 E-value=4.2e-07 Score=71.49 Aligned_cols=75 Identities=7% Similarity=0.021 Sum_probs=57.9
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL 348 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 348 (384)
.+++++|.|| ++||++|+...|.++++.++++ ..+.+..|+.|. ...+.+
T Consensus 18 ~~~~v~v~f~-a~wC~~C~~~~p~~~~~~~~~~-~~~~~~~vd~~~----------------------------~~~~~~ 67 (104)
T cd03004 18 RKEPWLVDFY-APWCGPCQALLPELRKAARALK-GKVKVGSVDCQK----------------------------YESLCQ 67 (104)
T ss_pred CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhc-CCcEEEEEECCc----------------------------hHHHHH
Confidence 4679999999 9999999999999999999884 346666666552 234567
Q ss_pred HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178 349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER 379 (384)
Q Consensus 349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~ 379 (384)
.|++ ..+|+.++++++|+.+..|..
T Consensus 68 ~~~i------~~~Pt~~~~~~g~~~~~~~~G 92 (104)
T cd03004 68 QANI------RAYPTIRLYPGNASKYHSYNG 92 (104)
T ss_pred HcCC------CcccEEEEEcCCCCCceEccC
Confidence 7888 678888888766577776654
No 159
>PRK10996 thioredoxin 2; Provisional
Probab=98.54 E-value=5e-07 Score=75.20 Aligned_cols=74 Identities=12% Similarity=0.145 Sum_probs=58.2
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL 348 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 348 (384)
.+|+++|+|| ++||++|+...|.|+++++++.+ ++.++.|+.|. ...+.+
T Consensus 51 ~~k~vvv~F~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~----------------------------~~~l~~ 100 (139)
T PRK10996 51 DDLPVVIDFW-APWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTEA----------------------------ERELSA 100 (139)
T ss_pred CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCCC----------------------------CHHHHH
Confidence 5789999999 99999999999999999988753 46676665542 235678
Q ss_pred HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178 349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER 379 (384)
Q Consensus 349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~ 379 (384)
+|++ ..+|++++++ +|+++..+..
T Consensus 101 ~~~V------~~~Ptlii~~-~G~~v~~~~G 124 (139)
T PRK10996 101 RFRI------RSIPTIMIFK-NGQVVDMLNG 124 (139)
T ss_pred hcCC------CccCEEEEEE-CCEEEEEEcC
Confidence 8998 6788877664 8999886653
No 160
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.54 E-value=2.9e-07 Score=72.56 Aligned_cols=69 Identities=14% Similarity=0.120 Sum_probs=51.8
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCC--cEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHH
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN--TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI 346 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~--v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 346 (384)
++++++|+|| ++||++|+...|.++++++++++.+ +.+..++.+. ...+
T Consensus 14 ~~~~vlv~f~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~----------------------------~~~~ 64 (104)
T cd03000 14 KEDIWLVDFY-APWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA----------------------------YSSI 64 (104)
T ss_pred cCCeEEEEEE-CCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc----------------------------CHhH
Confidence 4578999999 9999999999999999999997644 4444444321 2356
Q ss_pred HHHhCceecCCCceeeEEEEEeCCceE
Q psy17178 347 SLDYGVYLSDQGHTLDKYCLECYKMVI 373 (384)
Q Consensus 347 ~~~~gv~~~~~~~~~p~~~lId~~G~i 373 (384)
.+.|++ ..+|++++++ +|.+
T Consensus 65 ~~~~~I------~~~Pt~~l~~-~~~~ 84 (104)
T cd03000 65 ASEFGV------RGYPTIKLLK-GDLA 84 (104)
T ss_pred HhhcCC------ccccEEEEEc-CCCc
Confidence 778888 6889999995 4543
No 161
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.53 E-value=2e-08 Score=80.27 Aligned_cols=98 Identities=15% Similarity=0.113 Sum_probs=62.9
Q ss_pred CCCeEEEEEeeCCCCCCchHHHHHHHHhHH---HHHhCCcEEEEEeCCCHH-hHHhhccCccccCCCCccceeEEeeCcc
Q psy17178 79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLE---EFHQINTEVVAASVDSHF-THLAWVNTPRKEGGLGKLKIPLLSDLTH 154 (384)
Q Consensus 79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~---~~~~~~v~vi~Vs~d~~~-~~~~~~~~~~~~~~~~~~~~p~l~D~~~ 154 (384)
.||++++.|| ..|||+|+...+.+.+..+ .+ ..++.++.++.+... ...++.+. + +.+. +.....
T Consensus 4 ~~k~~v~~F~-~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~--~~~~~~ 72 (112)
T PF13098_consen 4 NGKPIVVVFT-DPWCPYCKKLEKELFPDNDVARYL-KDDFQVIFVNIDDSRDESEAVLDF---D----GQKN--VRLSNK 72 (112)
T ss_dssp TSSEEEEEEE--TT-HHHHHHHHHHHHHHHHHCEE-HCECEEEECESHSHHHHHHHHHSH---T----CHSS--CHHHHH
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHHHHh-hcCeEEEEEecCCccccccccccc---c----cchh--hhHHHH
Confidence 5789999999 9999999987777765433 23 236888888887644 33344441 1 2211 122235
Q ss_pred hhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeeee
Q psy17178 155 KISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYS 198 (384)
Q Consensus 155 ~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~p 198 (384)
++++.||| ..+|+++++|++|++.....|...+
T Consensus 73 ~l~~~~~v-----------~gtPt~~~~d~~G~~v~~~~G~~~~ 105 (112)
T PF13098_consen 73 ELAQRYGV-----------NGTPTIVFLDKDGKIVYRIPGYLSP 105 (112)
T ss_dssp HHHHHTT-------------SSSEEEECTTTSCEEEEEESS--H
T ss_pred HHHHHcCC-----------CccCEEEEEcCCCCEEEEecCCCCH
Confidence 79999998 3356788999999988777887754
No 162
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.53 E-value=3.8e-07 Score=71.30 Aligned_cols=72 Identities=8% Similarity=0.117 Sum_probs=55.4
Q ss_pred eEEEEEEeCCCCcCchHhHHHHHHHHHHHHh--CCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHH
Q psy17178 272 YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ--INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD 349 (384)
Q Consensus 272 ~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~--~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 349 (384)
+++|+|| ++||++|+...|.++++++++++ .++.++.|..+. ...+.+.
T Consensus 18 ~~lv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~----------------------------~~~~~~~ 68 (102)
T cd03005 18 NHFVKFF-APWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ----------------------------HRELCSE 68 (102)
T ss_pred CEEEEEE-CCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC----------------------------ChhhHhh
Confidence 4899999 99999999999999999999976 346666665432 2355677
Q ss_pred hCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178 350 YGVYLSDQGHTLDKYCLECYKMVIVYWFER 379 (384)
Q Consensus 350 ~gv~~~~~~~~~p~~~lId~~G~i~~~~~~ 379 (384)
|++ ...|+++++ ++|+.+..+..
T Consensus 69 ~~v------~~~Pt~~~~-~~g~~~~~~~G 91 (102)
T cd03005 69 FQV------RGYPTLLLF-KDGEKVDKYKG 91 (102)
T ss_pred cCC------CcCCEEEEE-eCCCeeeEeeC
Confidence 888 678988888 58887765553
No 163
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.51 E-value=5.8e-07 Score=70.47 Aligned_cols=76 Identities=14% Similarity=0.175 Sum_probs=55.8
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHh-CCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHH
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKIS 347 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~-~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 347 (384)
++++++|+|| ++||+.|+...|.++++.+.+++ ..+.++.|..+.. ....+.
T Consensus 16 ~~~~~~v~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--------------------------~~~~~~ 68 (104)
T cd02997 16 KEKHVLVMFY-APWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKP--------------------------EHDALK 68 (104)
T ss_pred hCCCEEEEEE-CCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCC--------------------------ccHHHH
Confidence 5678999999 99999999999999999998875 3355555554421 124567
Q ss_pred HHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178 348 LDYGVYLSDQGHTLDKYCLECYKMVIVYWFE 378 (384)
Q Consensus 348 ~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~ 378 (384)
+.||+ ..+|+. ++.++|+++..+.
T Consensus 69 ~~~~i------~~~Pt~-~~~~~g~~~~~~~ 92 (104)
T cd02997 69 EEYNV------KGFPTF-KYFENGKFVEKYE 92 (104)
T ss_pred HhCCC------ccccEE-EEEeCCCeeEEeC
Confidence 78888 578875 4556888877554
No 164
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.51 E-value=7.6e-07 Score=68.97 Aligned_cols=73 Identities=15% Similarity=0.209 Sum_probs=56.8
Q ss_pred CCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHH
Q psy17178 270 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD 349 (384)
Q Consensus 270 Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 349 (384)
+|+++|+|| ++||+.|+...+.|.++.+++ ..++.++.|..+. ...+.++
T Consensus 14 ~~~v~v~f~-~~~C~~C~~~~~~l~~l~~~~-~~~i~~~~vd~~~----------------------------~~~~~~~ 63 (97)
T cd02984 14 SKLLVLHFW-APWAEPCKQMNQVFEELAKEA-FPSVLFLSIEAEE----------------------------LPEISEK 63 (97)
T ss_pred CCEEEEEEE-CCCCHHHHHHhHHHHHHHHHh-CCceEEEEEcccc----------------------------CHHHHHh
Confidence 689999999 999999999999999999887 3456666664321 1356778
Q ss_pred hCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178 350 YGVYLSDQGHTLDKYCLECYKMVIVYWFER 379 (384)
Q Consensus 350 ~gv~~~~~~~~~p~~~lId~~G~i~~~~~~ 379 (384)
|++ ...|++++++ +|+++..+..
T Consensus 64 ~~i------~~~Pt~~~~~-~g~~~~~~~g 86 (97)
T cd02984 64 FEI------TAVPTFVFFR-NGTIVDRVSG 86 (97)
T ss_pred cCC------ccccEEEEEE-CCEEEEEEeC
Confidence 998 6789877775 8999886654
No 165
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=98.50 E-value=5.9e-07 Score=70.72 Aligned_cols=81 Identities=16% Similarity=0.215 Sum_probs=64.9
Q ss_pred ccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC--------HHhHHh
Q psy17178 59 FWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS--------HFTHLA 130 (384)
Q Consensus 59 ~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~--------~~~~~~ 130 (384)
+|+..++ +|++++|++|+||+++|.=. |+-|+.-. +...|++++++|+++|++|++.-.+. .+..+.
T Consensus 3 df~~~~~---~G~~v~l~~y~Gkv~LIVNv-As~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~ 77 (108)
T PF00255_consen 3 DFSAKDI---DGKPVSLSKYKGKVLLIVNV-ASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKE 77 (108)
T ss_dssp GSEEEBT---TSSEEEGGGGTTSEEEEEEE-ESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHH
T ss_pred ceeeeCC---CCCEECHHHcCCCEEEEEec-ccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHH
Confidence 6888777 99999999999998777777 88899777 99999999999999999999986542 455666
Q ss_pred hccCccccCCCCccceeEEe
Q psy17178 131 WVNTPRKEGGLGKLKIPLLS 150 (384)
Q Consensus 131 ~~~~~~~~~~~~~~~~p~l~ 150 (384)
|... +. +.+||+..
T Consensus 78 ~~~~--~~----~~~F~vf~ 91 (108)
T PF00255_consen 78 FCKE--KF----GVTFPVFE 91 (108)
T ss_dssp HHCH--CH----T-SSEEBS
T ss_pred HHHh--cc----CCcccceE
Confidence 6653 12 67888864
No 166
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.50 E-value=6.6e-07 Score=70.99 Aligned_cols=78 Identities=13% Similarity=0.113 Sum_probs=55.7
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhC-----CcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCc
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI-----NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLT 343 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~-----~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 343 (384)
.+++++|+|| ++||+.|+...|.++++.+++++. .+.+..|+ .|.+
T Consensus 17 ~~~~vlv~F~-a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd----------------------------~d~~ 67 (108)
T cd02996 17 SAELVLVNFY-ADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVD----------------------------CDKE 67 (108)
T ss_pred cCCEEEEEEE-CCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEE----------------------------CCCC
Confidence 4678999999 999999999999999999887542 12222232 3444
Q ss_pred hHHHHHhCceecCCCceeeEEEEEeCCceEEEEEecCCC
Q psy17178 344 HKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFERGNC 382 (384)
Q Consensus 344 ~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~~~ 382 (384)
..+.++||+ ..+|+.++. ++|++......|..
T Consensus 68 ~~l~~~~~v------~~~Ptl~~~-~~g~~~~~~~~g~~ 99 (108)
T cd02996 68 SDIADRYRI------NKYPTLKLF-RNGMMMKREYRGQR 99 (108)
T ss_pred HHHHHhCCC------CcCCEEEEE-eCCcCcceecCCCC
Confidence 677888998 688988888 68885433333443
No 167
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=98.50 E-value=3e-07 Score=81.50 Aligned_cols=124 Identities=19% Similarity=0.333 Sum_probs=86.7
Q ss_pred cccccCCCCCCccEEEeeecCccce-EEcccc-CC-CeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178 48 FYSKNLSKPAPFWQGTAVVDGQLKE-IKLSDY-YG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124 (384)
Q Consensus 48 ~~~~~~G~~aP~f~l~~~~~~~g~~-~~l~~~-~g-k~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~ 124 (384)
.....+|.+|||..+-++ +|++ .++.|+ +| +|+||+|...+ ||+=...+.+++++.++|.+. ++++.|....
T Consensus 70 ~~~a~~G~~APns~vv~l---~g~~~~~ildf~~g~RPLVlnFGS~T-CPpF~~~l~~f~~l~~~f~d~-adFl~VYI~E 144 (237)
T PF00837_consen 70 FKEAKLGGPAPNSPVVTL---DGQRSCRILDFAKGNRPLVLNFGSCT-CPPFMAKLDAFKRLVEDFSDV-ADFLIVYIEE 144 (237)
T ss_pred ccceeCCCCCCCCceEee---CCCcceeHHHhccCCCCeEEEccccc-chHHHHHHHHHHHHHHHhhhh-hheehhhHhh
Confidence 455679999999999888 8888 999999 55 79999999555 999999999999999999863 3344443211
Q ss_pred ------------------HHhHH---hhccCccccCCCCccceeEEeeC-cchhHHhhcCcccCCCCcccceeEEEEEEE
Q psy17178 125 ------------------HFTHL---AWVNTPRKEGGLGKLKIPLLSDL-THKISLDYGVYLSDQGPVRGSLLSTAIFVY 182 (384)
Q Consensus 125 ------------------~~~~~---~~~~~~~~~~~~~~~~~p~l~D~-~~~~~~~ygv~~~~~g~~~g~~~~~~~~vi 182 (384)
..+++ .-++.+.++ ...+|++.|. ++...++||.+- .| ++||
T Consensus 145 AHpsDgW~~~~~~~~i~qh~sledR~~aA~~l~~~----~~~~pi~vD~mdN~~~~~YgA~P-----------eR-lyIi 208 (237)
T PF00837_consen 145 AHPSDGWAFGNNPYEIPQHRSLEDRLRAAKLLKEE----FPQCPIVVDTMDNNFNKAYGALP-----------ER-LYII 208 (237)
T ss_pred hCcCCCccCCCCceeecCCCCHHHHHHHHHHHHhh----CCCCCEEEEccCCHHHHHhCCCc-----------ce-EEEE
Confidence 00111 112222223 4679999987 588999999832 33 4566
Q ss_pred ecCCCcccccce
Q psy17178 183 ALTSPVNGYAGG 194 (384)
Q Consensus 183 d~~G~v~~~~~g 194 (384)
. +|+|. |..|
T Consensus 209 ~-~gkv~-Y~Gg 218 (237)
T PF00837_consen 209 Q-DGKVV-YKGG 218 (237)
T ss_pred E-CCEEE-EeCC
Confidence 4 99986 4444
No 168
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=98.48 E-value=1.7e-06 Score=76.78 Aligned_cols=119 Identities=18% Similarity=0.234 Sum_probs=85.5
Q ss_pred CCCCCCCCCceeeeEEcCccee-eecccc-C-CCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeC-----
Q psy17178 241 PFVSKPAPFWQGTAVVDGQLKE-IKLSDY-Y-GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV----- 312 (384)
Q Consensus 241 ~~~g~~~P~f~l~~l~d~~g~~-~~l~d~-~-Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~----- 312 (384)
..+|..+|+..+.++ +|+. .++-|| + ++++||+|. +..||+-+..+..++++.++|.+. +.++.|.+
T Consensus 73 a~~G~~APns~vv~l---~g~~~~~ildf~~g~RPLVlnFG-S~TCPpF~~~l~~f~~l~~~f~d~-adFl~VYI~EAHp 147 (237)
T PF00837_consen 73 AKLGGPAPNSPVVTL---DGQRSCRILDFAKGNRPLVLNFG-SCTCPPFMAKLDAFKRLVEDFSDV-ADFLIVYIEEAHP 147 (237)
T ss_pred eeCCCCCCCCceEee---CCCcceeHHHhccCCCCeEEEcc-cccchHHHHHHHHHHHHHHHhhhh-hheehhhHhhhCc
Confidence 358999999999987 8888 999998 4 489999999 444899999999999999999863 45666632
Q ss_pred -C------C------H---HhHHHHhcCccccCCCCCcceeEEecCc-hHHHHHhCceecCCCceeeEEEEEeCCceEEE
Q psy17178 313 -D------S------H---FTHLAWVNTPRKEGGLGKLKIPLLSDLT-HKISLDYGVYLSDQGHTLDKYCLECYKMVIVY 375 (384)
Q Consensus 313 -d------~------~---~~~~~~~~~~~~~~~~~~~~~~~~~D~~-~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~ 375 (384)
| + + ++-.+-++.++++ ...+|++.|.- +...++||.. +. +.|||. +|||+|
T Consensus 148 sDgW~~~~~~~~i~qh~sledR~~aA~~l~~~----~~~~pi~vD~mdN~~~~~YgA~------Pe-RlyIi~-~gkv~Y 215 (237)
T PF00837_consen 148 SDGWAFGNNPYEIPQHRSLEDRLRAAKLLKEE----FPQCPIVVDTMDNNFNKAYGAL------PE-RLYIIQ-DGKVVY 215 (237)
T ss_pred CCCccCCCCceeecCCCCHHHHHHHHHHHHhh----CCCCCEEEEccCCHHHHHhCCC------cc-eEEEEE-CCEEEE
Confidence 1 1 1 1111122223222 46788888765 7888999972 22 457775 999998
Q ss_pred E
Q psy17178 376 W 376 (384)
Q Consensus 376 ~ 376 (384)
.
T Consensus 216 ~ 216 (237)
T PF00837_consen 216 K 216 (237)
T ss_pred e
Confidence 4
No 169
>KOG1651|consensus
Probab=98.48 E-value=5.4e-07 Score=74.77 Aligned_cols=132 Identities=14% Similarity=0.149 Sum_probs=90.2
Q ss_pred CCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC--------CHH
Q psy17178 55 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD--------SHF 126 (384)
Q Consensus 55 ~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d--------~~~ 126 (384)
..+-+|+..++ +|+.++|+.|+||++++.=. |+.|..-..+-.+|++++++|+++|++|++.--+ +.+
T Consensus 12 ~siydf~~~d~---~G~~v~l~~yrGkV~LiVNV-AS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~ 87 (171)
T KOG1651|consen 12 GSIYDFSAKDL---DGEYVSLSQYRGKVVLIVNV-ASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNE 87 (171)
T ss_pred cceeeeEEecC---CCCCccHHHhCCeEEEEEEc-ccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcH
Confidence 45678998887 99999999999998887777 9999988888899999999999999999998543 233
Q ss_pred hHHhhccCccccCCCCccceeEEe--eCcch-hHHhhcCcccCCCC-c-ccceeEEEEEEEecCCCcccccceee
Q psy17178 127 THLAWVNTPRKEGGLGKLKIPLLS--DLTHK-ISLDYGVYLSDQGP-V-RGSLLSTAIFVYALTSPVNGYAGGAL 196 (384)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~p~l~--D~~~~-~~~~ygv~~~~~g~-~-~g~~~~~~~~vid~~G~v~~~~~g~~ 196 (384)
....|+.. +. +..||++. |.+|+ ..-.|.......+. . ..+.---.=|+||++|.|+....-..
T Consensus 88 Ei~~f~~~--r~----~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ptt 156 (171)
T KOG1651|consen 88 EILNFVKV--RY----GAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSPTT 156 (171)
T ss_pred HHHHHHHh--cc----CCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCCCC
Confidence 44555541 23 67788885 44432 22223333222221 1 11222245689999999986544433
No 170
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.47 E-value=8.8e-07 Score=70.81 Aligned_cols=44 Identities=9% Similarity=0.082 Sum_probs=37.6
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 314 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~ 314 (384)
.+++++|.|| ++||++|+...|.+.++.+++++. +.+..|+.|.
T Consensus 28 ~~~~vlV~Fy-A~WC~~Ck~l~p~~~~la~~~~~~-v~~~~Vd~d~ 71 (113)
T cd03006 28 DAEVSLVMYY-APWDAQSQAARQEFEQVAQKLSDQ-VLFVAINCWW 71 (113)
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEECCC
Confidence 4579999999 999999999999999999999643 7777777663
No 171
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=98.44 E-value=1.4e-06 Score=68.70 Aligned_cols=81 Identities=17% Similarity=0.188 Sum_probs=64.3
Q ss_pred CceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeC--------CCHHhHHH
Q psy17178 249 FWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV--------DSHFTHLA 320 (384)
Q Consensus 249 ~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~--------d~~~~~~~ 320 (384)
+|+.. |.+|+.++|+.|+||++||.=. |+-|+.-. +...|++++++|+++|+.|+++-- ++.+++++
T Consensus 3 df~~~---~~~G~~v~l~~y~Gkv~LIVNv-As~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~ 77 (108)
T PF00255_consen 3 DFSAK---DIDGKPVSLSKYKGKVLLIVNV-ASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKE 77 (108)
T ss_dssp GSEEE---BTTSSEEEGGGGTTSEEEEEEE-ESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHH
T ss_pred ceeee---CCCCCEECHHHcCCCEEEEEec-ccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHH
Confidence 56776 4599999999999998777766 88888777 999999999999999999999953 34566777
Q ss_pred HhcCccccCCCCCcceeEEe
Q psy17178 321 WVNTPRKEGGLGKLKIPLLS 340 (384)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~ 340 (384)
++... + +.+||+..
T Consensus 78 ~~~~~--~----~~~F~vf~ 91 (108)
T PF00255_consen 78 FCKEK--F----GVTFPVFE 91 (108)
T ss_dssp HHCHC--H----T-SSEEBS
T ss_pred HHHhc--c----CCcccceE
Confidence 76652 1 67888864
No 172
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.42 E-value=9.5e-07 Score=68.88 Aligned_cols=74 Identities=11% Similarity=0.091 Sum_probs=56.1
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCC-cEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHH
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN-TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKIS 347 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~-v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 347 (384)
++++++|+|| ++||+.|+...+.++++.+.++..+ +.++.+..| ....+.
T Consensus 12 ~~~~~~i~f~-~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~----------------------------~~~~~~ 62 (102)
T TIGR01126 12 SNKDVLVEFY-APWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDAT----------------------------AEKDLA 62 (102)
T ss_pred cCCcEEEEEE-CCCCHHHHhhChHHHHHHHHhccCCceEEEEEEcc----------------------------chHHHH
Confidence 6889999999 9999999999999999998886543 555444432 124566
Q ss_pred HHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178 348 LDYGVYLSDQGHTLDKYCLECYKMVIVYWFE 378 (384)
Q Consensus 348 ~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~ 378 (384)
+.|++ ..+|+.+++++++. ...+.
T Consensus 63 ~~~~i------~~~P~~~~~~~~~~-~~~~~ 86 (102)
T TIGR01126 63 SRFGV------SGFPTIKFFPKGKK-PVDYE 86 (102)
T ss_pred HhCCC------CcCCEEEEecCCCc-ceeec
Confidence 78888 67899999998876 33343
No 173
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.41 E-value=2.1e-06 Score=67.86 Aligned_cols=46 Identities=20% Similarity=0.150 Sum_probs=40.1
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHH
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHF 316 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~ 316 (384)
.+|++||.|+ ++||++|+..-|.|.++.+++++. +.++-|.+|...
T Consensus 13 ~~klVVVdF~-a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVDev~ 58 (114)
T cd02986 13 AEKVLVLRFG-RDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVDKVP 58 (114)
T ss_pred CCCEEEEEEe-CCCChhHHHHHHHHHHHHHHccCc-eEEEEEeccccH
Confidence 5799999999 999999999999999999999533 788888888543
No 174
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.37 E-value=1.1e-06 Score=68.83 Aligned_cols=76 Identities=13% Similarity=0.142 Sum_probs=57.4
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHh-CCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHH
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKIS 347 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~-~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 347 (384)
.+|+++|.|| ++||+.|+...|.+.++.++++. .++.++.|+.+.+ ...+.
T Consensus 17 ~~~~~~v~f~-a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~---------------------------~~~~~ 68 (105)
T cd02998 17 DKKDVLVEFY-APWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA---------------------------NKDLA 68 (105)
T ss_pred CCCcEEEEEE-CCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc---------------------------chhhH
Confidence 3578999999 99999999999999999999863 3566666665431 23557
Q ss_pred HHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178 348 LDYGVYLSDQGHTLDKYCLECYKMVIVYWFE 378 (384)
Q Consensus 348 ~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~ 378 (384)
++|++ ..+|++++++++|+....+.
T Consensus 69 ~~~~i------~~~P~~~~~~~~~~~~~~~~ 93 (105)
T cd02998 69 KKYGV------SGFPTLKFFPKGSTEPVKYE 93 (105)
T ss_pred HhCCC------CCcCEEEEEeCCCCCccccC
Confidence 77888 67888888887766655444
No 175
>PRK09381 trxA thioredoxin; Provisional
Probab=98.37 E-value=1e-06 Score=69.95 Aligned_cols=43 Identities=12% Similarity=0.250 Sum_probs=36.7
Q ss_pred CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178 79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD 123 (384)
Q Consensus 79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d 123 (384)
.+++++|.|| ++|||+|+...|.++++.+++.+ ++.++.|+.|
T Consensus 20 ~~~~vvv~f~-~~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~ 62 (109)
T PRK09381 20 ADGAILVDFW-AEWCGPCKMIAPILDEIADEYQG-KLTVAKLNID 62 (109)
T ss_pred CCCeEEEEEE-CCCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECC
Confidence 3678999999 99999999999999999999864 4777777654
No 176
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.36 E-value=1.3e-06 Score=73.54 Aligned_cols=45 Identities=9% Similarity=0.110 Sum_probs=39.9
Q ss_pred CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178 79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124 (384)
Q Consensus 79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~ 124 (384)
++++++|.|| ++||++|+...|.+.++.+++++.++.++.|+.|.
T Consensus 46 ~~~~vvV~Fy-a~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~ 90 (152)
T cd02962 46 KRVTWLVEFF-TTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR 90 (152)
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC
Confidence 4578999999 99999999999999999999876678888888775
No 177
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.30 E-value=2.3e-06 Score=68.10 Aligned_cols=44 Identities=18% Similarity=0.195 Sum_probs=35.7
Q ss_pred CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178 79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124 (384)
Q Consensus 79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~ 124 (384)
.++++||.|| ++||++|+.-.|.|.++.+++.+. +.++-|++|.
T Consensus 13 ~~~~vVV~F~-A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDvD~ 56 (114)
T cd02954 13 EEKVVVIRFG-RDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDIDE 56 (114)
T ss_pred CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHccCc-eEEEEEECCC
Confidence 3578999999 999999999999999999987532 4566666654
No 178
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.29 E-value=1.7e-06 Score=67.69 Aligned_cols=44 Identities=14% Similarity=0.151 Sum_probs=37.5
Q ss_pred CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178 79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124 (384)
Q Consensus 79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~ 124 (384)
.+++++|.|| +.||+.|+...|.+.++.++++. .+.+..|+.|.
T Consensus 17 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~a~~~~~-~~~~~~vd~~~ 60 (101)
T cd03003 17 SGEIWFVNFY-SPRCSHCHDLAPTWREFAKEMDG-VIRIGAVNCGD 60 (101)
T ss_pred CCCeEEEEEE-CCCChHHHHhHHHHHHHHHHhcC-ceEEEEEeCCc
Confidence 4688999999 99999999999999999999864 36777777764
No 179
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.29 E-value=3.3e-06 Score=75.71 Aligned_cols=70 Identities=10% Similarity=0.104 Sum_probs=54.4
Q ss_pred CCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHH
Q psy17178 270 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD 349 (384)
Q Consensus 270 Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 349 (384)
+++++|+|| ++||++|+...|.++++.+++++ .+.+..|..+ .+..+.++
T Consensus 52 ~~~vlV~Fy-ApWC~~Ck~~~P~~e~la~~~~~-~v~~~~VD~~----------------------------~~~~l~~~ 101 (224)
T PTZ00443 52 TGPWFVKFY-APWCSHCRKMAPAWERLAKALKG-QVNVADLDAT----------------------------RALNLAKR 101 (224)
T ss_pred CCCEEEEEE-CCCChHHHHHHHHHHHHHHHcCC-CeEEEEecCc----------------------------ccHHHHHH
Confidence 578999999 99999999999999999998864 2444433322 12457788
Q ss_pred hCceecCCCceeeEEEEEeCCceEEEE
Q psy17178 350 YGVYLSDQGHTLDKYCLECYKMVIVYW 376 (384)
Q Consensus 350 ~gv~~~~~~~~~p~~~lId~~G~i~~~ 376 (384)
|++ ..+|++++++ +|+++..
T Consensus 102 ~~I------~~~PTl~~f~-~G~~v~~ 121 (224)
T PTZ00443 102 FAI------KGYPTLLLFD-KGKMYQY 121 (224)
T ss_pred cCC------CcCCEEEEEE-CCEEEEe
Confidence 999 7899999998 7887763
No 180
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.29 E-value=1.6e-06 Score=69.77 Aligned_cols=44 Identities=16% Similarity=0.225 Sum_probs=38.8
Q ss_pred CCCeEEEEEeeC-------CCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178 79 YGKYLVFFFYPL-------DFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124 (384)
Q Consensus 79 ~gk~vvl~f~~~-------~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~ 124 (384)
+|++++|.|| + +|||+|+...|.+.++.++++ .++.++-|.+|.
T Consensus 20 ~~~~vvV~F~-A~~~~~~~~WC~pCr~~~P~l~~l~~~~~-~~v~fv~Vdvd~ 70 (119)
T cd02952 20 EGKPIFILFY-GDKDPDGQSWCPDCVKAEPVVREALKAAP-EDCVFIYCDVGD 70 (119)
T ss_pred CCCeEEEEEE-ccCCCCCCCCCHhHHhhchhHHHHHHHCC-CCCEEEEEEcCC
Confidence 5789999999 8 999999999999999999886 358888888875
No 181
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.27 E-value=2.6e-06 Score=65.79 Aligned_cols=75 Identities=15% Similarity=0.147 Sum_probs=56.8
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHH-hCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHH
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH-QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKIS 347 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~-~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 347 (384)
++++++|.|| +.||+.|....+.+.++.+.++ ..++.++.|+.+. ...+.
T Consensus 14 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----------------------------~~~~~ 64 (101)
T cd02961 14 DSKDVLVEFY-APWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA----------------------------NNDLC 64 (101)
T ss_pred CCCcEEEEEE-CCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc----------------------------hHHHH
Confidence 4568999999 9999999999999999998885 3456666665432 24566
Q ss_pred HHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178 348 LDYGVYLSDQGHTLDKYCLECYKMVIVYWFE 378 (384)
Q Consensus 348 ~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~ 378 (384)
+.|++ ...|+.++++++|+....+.
T Consensus 65 ~~~~i------~~~Pt~~~~~~~~~~~~~~~ 89 (101)
T cd02961 65 SEYGV------RGYPTIKLFPNGSKEPVKYE 89 (101)
T ss_pred HhCCC------CCCCEEEEEcCCCcccccCC
Confidence 77888 67889999988765555444
No 182
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.25 E-value=7.3e-06 Score=66.53 Aligned_cols=42 Identities=7% Similarity=0.040 Sum_probs=36.3
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 314 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~ 314 (384)
.|+.++|+|+ ++|||+|+...|.|.++.++ .++.++-|++|.
T Consensus 22 ~~~~~iv~f~-~~~Cp~C~~~~P~l~~~~~~---~~~~~y~vdvd~ 63 (122)
T TIGR01295 22 KKETATFFIG-RKTCPYCRKFSGTLSGVVAQ---TKAPIYYIDSEN 63 (122)
T ss_pred cCCcEEEEEE-CCCChhHHHHhHHHHHHHHh---cCCcEEEEECCC
Confidence 4677899999 99999999999999999886 347789999873
No 183
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.25 E-value=3.3e-06 Score=65.99 Aligned_cols=41 Identities=12% Similarity=0.218 Sum_probs=33.3
Q ss_pred CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEe
Q psy17178 79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAAS 121 (384)
Q Consensus 79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs 121 (384)
+|+ ++|.|| ++||++|+...|.+.++.++++..++.+..|.
T Consensus 16 ~~~-~lv~f~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd 56 (101)
T cd02994 16 EGE-WMIEFY-APWCPACQQLQPEWEEFADWSDDLGINVAKVD 56 (101)
T ss_pred CCC-EEEEEE-CCCCHHHHHHhHHHHHHHHhhccCCeEEEEEE
Confidence 566 579999 99999999999999999987765556666554
No 184
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.24 E-value=5.4e-06 Score=64.32 Aligned_cols=72 Identities=17% Similarity=0.203 Sum_probs=55.8
Q ss_pred CCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHH
Q psy17178 270 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD 349 (384)
Q Consensus 270 Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 349 (384)
++.++|+|| ++||+.|....+.++++.+++.+ ++.++.|..|.. ..+.++
T Consensus 14 ~~~vvi~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~----------------------------~~~~~~ 63 (101)
T TIGR01068 14 DKPVLVDFW-APWCGPCKMIAPILEELAKEYEG-KVKFVKLNVDEN----------------------------PDIAAK 63 (101)
T ss_pred CCcEEEEEE-CCCCHHHHHhCHHHHHHHHHhcC-CeEEEEEECCCC----------------------------HHHHHH
Confidence 568999999 99999999999999999988753 477777765521 245667
Q ss_pred hCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178 350 YGVYLSDQGHTLDKYCLECYKMVIVYWFE 378 (384)
Q Consensus 350 ~gv~~~~~~~~~p~~~lId~~G~i~~~~~ 378 (384)
|++ ...|+.+++ ++|++...+.
T Consensus 64 ~~v------~~~P~~~~~-~~g~~~~~~~ 85 (101)
T TIGR01068 64 YGI------RSIPTLLLF-KNGKEVDRSV 85 (101)
T ss_pred cCC------CcCCEEEEE-eCCcEeeeec
Confidence 888 678888888 5788776443
No 185
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.24 E-value=6.2e-06 Score=68.22 Aligned_cols=44 Identities=11% Similarity=0.135 Sum_probs=37.5
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 314 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~ 314 (384)
.+|++||.|| ++||++|+...|.|.++.+++++. +.|+-|++|.
T Consensus 22 ~~~lVVvdF~-A~WCgpCk~m~p~l~~la~~~~~~-~~~~kVDVDe 65 (142)
T PLN00410 22 EERLVVIRFG-HDWDETCMQMDEVLASVAETIKNF-AVIYLVDITE 65 (142)
T ss_pred CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHcCCc-eEEEEEECCC
Confidence 4689999999 999999999999999999988533 6677788774
No 186
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.24 E-value=7.1e-06 Score=64.84 Aligned_cols=78 Identities=15% Similarity=0.111 Sum_probs=59.3
Q ss_pred CCCeEEEEEEeCCC--CcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHH
Q psy17178 269 YGKYLVFFFYPLDF--TFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI 346 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~--c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 346 (384)
.|.++||.|| +.| ||.|....|.|.++.++|.+. +.++-|+.|. +..+
T Consensus 26 ~~~~~v~~f~-~~~~~cp~c~~i~P~leela~e~~~~-v~f~kVdid~----------------------------~~~l 75 (111)
T cd02965 26 AGGDLVLLLA-GDPVRFPEVLDVAVVLPELLKAFPGR-FRAAVVGRAD----------------------------EQAL 75 (111)
T ss_pred CCCCEEEEec-CCcccCcchhhhHhHHHHHHHHCCCc-EEEEEEECCC----------------------------CHHH
Confidence 5677899999 886 999999999999999988543 5565666553 2466
Q ss_pred HHHhCceecCCCceeeEEEEEeCCceEEEEEecCCCCC
Q psy17178 347 SLDYGVYLSDQGHTLDKYCLECYKMVIVYWFERGNCDW 384 (384)
Q Consensus 347 ~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~~~d~ 384 (384)
+.+|+| ...|+.++.. +|+++.... |..+|
T Consensus 76 a~~f~V------~sIPTli~fk-dGk~v~~~~-G~~~~ 105 (111)
T cd02965 76 AARFGV------LRTPALLFFR-DGRYVGVLA-GIRDW 105 (111)
T ss_pred HHHcCC------CcCCEEEEEE-CCEEEEEEe-CccCH
Confidence 778999 7889776664 899998664 55444
No 187
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.24 E-value=3.4e-06 Score=66.76 Aligned_cols=44 Identities=16% Similarity=0.184 Sum_probs=37.3
Q ss_pred CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178 79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124 (384)
Q Consensus 79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~ 124 (384)
.|++++|.|| ++||++|+...|.+.++.++++. .+.++.|+.|.
T Consensus 17 ~~~~~lv~f~-a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~v~~~~ 60 (109)
T cd03002 17 TNYTTLVEFY-APWCGHCKNLKPEYAKAAKELDG-LVQVAAVDCDE 60 (109)
T ss_pred CCCeEEEEEE-CCCCHHHHhhChHHHHHHHHhcC-CceEEEEecCc
Confidence 4678999999 99999999999999999998863 47777777764
No 188
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.23 E-value=5.2e-06 Score=64.48 Aligned_cols=43 Identities=16% Similarity=0.267 Sum_probs=35.5
Q ss_pred CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178 79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD 123 (384)
Q Consensus 79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d 123 (384)
.+|++++.|| ++||+.|+...+.+.++.+++.+ ++.++.|+.|
T Consensus 12 ~~~~vlv~f~-a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d 54 (97)
T cd02949 12 SDRLILVLYT-SPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDID 54 (97)
T ss_pred CCCeEEEEEE-CCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECC
Confidence 4678999999 99999999999999999988753 4666666654
No 189
>PRK10996 thioredoxin 2; Provisional
Probab=98.23 E-value=5.1e-06 Score=69.17 Aligned_cols=76 Identities=17% Similarity=0.254 Sum_probs=53.7
Q ss_pred CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchhHH
Q psy17178 79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL 158 (384)
Q Consensus 79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~ 158 (384)
.+|+++|+|| ++||++|+...|.|.++.+++.+ ++.++.|..|. ..++++
T Consensus 51 ~~k~vvv~F~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~----------------------------~~~l~~ 100 (139)
T PRK10996 51 DDLPVVIDFW-APWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTEA----------------------------ERELSA 100 (139)
T ss_pred CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCCC----------------------------CHHHHH
Confidence 4789999999 99999999999999999988753 46666664432 234677
Q ss_pred hhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178 159 DYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL 196 (384)
Q Consensus 159 ~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~ 196 (384)
+|+| ++++ +++++ ++|++.....|..
T Consensus 101 ~~~V--------~~~P---tlii~-~~G~~v~~~~G~~ 126 (139)
T PRK10996 101 RFRI--------RSIP---TIMIF-KNGQVVDMLNGAV 126 (139)
T ss_pred hcCC--------CccC---EEEEE-ECCEEEEEEcCCC
Confidence 7887 2333 33444 5888876666643
No 190
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.19 E-value=2e-05 Score=63.10 Aligned_cols=72 Identities=13% Similarity=0.059 Sum_probs=55.4
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL 348 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 348 (384)
.+++++|+|| +.||++|+...|.|.++.+++. ++.++-|..|.. ..+++
T Consensus 21 ~~~~vvV~f~-a~~c~~C~~~~p~l~~la~~~~--~i~f~~Vd~~~~----------------------------~~l~~ 69 (113)
T cd02989 21 SSERVVCHFY-HPEFFRCKIMDKHLEILAKKHL--ETKFIKVNAEKA----------------------------PFLVE 69 (113)
T ss_pred CCCcEEEEEE-CCCCccHHHHHHHHHHHHHHcC--CCEEEEEEcccC----------------------------HHHHH
Confidence 4578999999 9999999999999999998874 467777766531 24567
Q ss_pred HhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178 349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFE 378 (384)
Q Consensus 349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~ 378 (384)
+|++ ...|+.++.. +|+++.++.
T Consensus 70 ~~~v------~~vPt~l~fk-~G~~v~~~~ 92 (113)
T cd02989 70 KLNI------KVLPTVILFK-NGKTVDRIV 92 (113)
T ss_pred HCCC------ccCCEEEEEE-CCEEEEEEE
Confidence 7888 6788766665 888887554
No 191
>PTZ00051 thioredoxin; Provisional
Probab=98.19 E-value=7e-06 Score=63.64 Aligned_cols=74 Identities=15% Similarity=0.196 Sum_probs=52.9
Q ss_pred CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchhHH
Q psy17178 79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL 158 (384)
Q Consensus 79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~ 158 (384)
.+++++|+|| ++||++|+...+.+.++.+++. ++.++.|+.+. ...+++
T Consensus 17 ~~~~vli~f~-~~~C~~C~~~~~~l~~l~~~~~--~~~~~~vd~~~----------------------------~~~~~~ 65 (98)
T PTZ00051 17 QNELVIVDFY-AEWCGPCKRIAPFYEECSKEYT--KMVFVKVDVDE----------------------------LSEVAE 65 (98)
T ss_pred cCCeEEEEEE-CCCCHHHHHHhHHHHHHHHHcC--CcEEEEEECcc----------------------------hHHHHH
Confidence 3678999999 9999999999999999888653 45565554431 235667
Q ss_pred hhcCcccCCCCcccceeEEEEEEEecCCCccccccee
Q psy17178 159 DYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGA 195 (384)
Q Consensus 159 ~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~ 195 (384)
.|++ + ..|+ +++.++|++.+...|.
T Consensus 66 ~~~v--------~---~~Pt-~~~~~~g~~~~~~~G~ 90 (98)
T PTZ00051 66 KENI--------T---SMPT-FKVFKNGSVVDTLLGA 90 (98)
T ss_pred HCCC--------c---eeeE-EEEEeCCeEEEEEeCC
Confidence 7777 2 2343 4555899888777774
No 192
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.17 E-value=4.4e-06 Score=67.35 Aligned_cols=49 Identities=16% Similarity=0.212 Sum_probs=36.1
Q ss_pred EccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178 74 KLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124 (384)
Q Consensus 74 ~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~ 124 (384)
..+..+||+++|.|| ++||++|+...|.+.+..+... .+..++.|.+|.
T Consensus 13 ~~A~~~~kpVlV~F~-a~WC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~ 61 (117)
T cd02959 13 KEAKDSGKPLMLLIH-KTWCGACKALKPKFAESKEISE-LSHNFVMVNLED 61 (117)
T ss_pred HHHHHcCCcEEEEEe-CCcCHHHHHHHHHHhhhHHHHh-hcCcEEEEEecC
Confidence 334446899999999 9999999999999988766543 334555565553
No 193
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.17 E-value=6.6e-06 Score=64.39 Aligned_cols=44 Identities=16% Similarity=0.227 Sum_probs=34.6
Q ss_pred CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhC-CcEEEEEeCC
Q psy17178 79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI-NTEVVAASVD 123 (384)
Q Consensus 79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~v~vi~Vs~d 123 (384)
++++++|+|| ++||++|+...|.++++.+.+++. .+.++.|..+
T Consensus 16 ~~~~~~v~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~ 60 (104)
T cd02997 16 KEKHVLVMFY-APWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCT 60 (104)
T ss_pred hCCCEEEEEE-CCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECC
Confidence 4678999999 999999999999999999988643 3444445433
No 194
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.17 E-value=1.5e-05 Score=63.84 Aligned_cols=70 Identities=11% Similarity=0.084 Sum_probs=52.6
Q ss_pred CCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHH
Q psy17178 270 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD 349 (384)
Q Consensus 270 Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 349 (384)
+++++|.|| +.||++|....|.++++.+++. ++.++-|+.+. . .++++
T Consensus 24 ~~~vvv~F~-a~~c~~C~~l~~~l~~la~~~~--~v~f~~vd~~~----------------------------~-~l~~~ 71 (113)
T cd02957 24 GTRVVVHFY-EPGFPRCKILDSHLEELAAKYP--ETKFVKINAEK----------------------------A-FLVNY 71 (113)
T ss_pred CCEEEEEEe-CCCCCcHHHHHHHHHHHHHHCC--CcEEEEEEchh----------------------------h-HHHHh
Confidence 479999999 9999999999999999998874 45565555442 1 34566
Q ss_pred hCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178 350 YGVYLSDQGHTLDKYCLECYKMVIVYWFE 378 (384)
Q Consensus 350 ~gv~~~~~~~~~p~~~lId~~G~i~~~~~ 378 (384)
|++ ..+|+.++. ++|+++..+.
T Consensus 72 ~~i------~~~Pt~~~f-~~G~~v~~~~ 93 (113)
T cd02957 72 LDI------KVLPTLLVY-KNGELIDNIV 93 (113)
T ss_pred cCC------CcCCEEEEE-ECCEEEEEEe
Confidence 777 577866555 4888888665
No 195
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.16 E-value=1.8e-05 Score=61.58 Aligned_cols=74 Identities=16% Similarity=0.271 Sum_probs=58.1
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL 348 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 348 (384)
.++++||.|| +.||+.|....|.++++.+++.+ ++.++-|..+.. ..+.+
T Consensus 16 ~~~~vvv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~----------------------------~~l~~ 65 (103)
T PF00085_consen 16 SDKPVVVYFY-APWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDEN----------------------------KELCK 65 (103)
T ss_dssp TSSEEEEEEE-STTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTS----------------------------HHHHH
T ss_pred cCCCEEEEEe-CCCCCccccccceeccccccccc-ccccchhhhhcc----------------------------chhhh
Confidence 3689999999 99999999999999999999876 777777776521 34567
Q ss_pred HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178 349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER 379 (384)
Q Consensus 349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~ 379 (384)
+|++ ..+|+.+++. +|+....+..
T Consensus 66 ~~~v------~~~Pt~~~~~-~g~~~~~~~g 89 (103)
T PF00085_consen 66 KYGV------KSVPTIIFFK-NGKEVKRYNG 89 (103)
T ss_dssp HTTC------SSSSEEEEEE-TTEEEEEEES
T ss_pred ccCC------CCCCEEEEEE-CCcEEEEEEC
Confidence 7888 6788877775 6666665553
No 196
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.16 E-value=9.8e-06 Score=63.33 Aligned_cols=65 Identities=14% Similarity=0.178 Sum_probs=49.7
Q ss_pred CCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHH
Q psy17178 270 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD 349 (384)
Q Consensus 270 Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 349 (384)
+++++|.|| ++||+.|+...|.+.++.++++. .+.+..+..|. ...+.++
T Consensus 18 ~~~vlv~f~-a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~~----------------------------~~~~~~~ 67 (103)
T cd03001 18 DDVWLVEFY-APWCGHCKNLAPEWKKAAKALKG-IVKVGAVDADV----------------------------HQSLAQQ 67 (103)
T ss_pred CCcEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECcc----------------------------hHHHHHH
Confidence 567899999 99999999999999999988753 36666665432 2355677
Q ss_pred hCceecCCCceeeEEEEEeCC
Q psy17178 350 YGVYLSDQGHTLDKYCLECYK 370 (384)
Q Consensus 350 ~gv~~~~~~~~~p~~~lId~~ 370 (384)
|++ ..+|++++++++
T Consensus 68 ~~i------~~~P~~~~~~~~ 82 (103)
T cd03001 68 YGV------RGFPTIKVFGAG 82 (103)
T ss_pred CCC------CccCEEEEECCC
Confidence 888 578888888744
No 197
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.14 E-value=1e-05 Score=63.57 Aligned_cols=44 Identities=9% Similarity=0.141 Sum_probs=35.8
Q ss_pred CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178 79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124 (384)
Q Consensus 79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~ 124 (384)
.+++++|.|| ++||++|+...|.+.++.++++. ++.+..|+.|.
T Consensus 18 ~~~~v~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~ 61 (104)
T cd03004 18 RKEPWLVDFY-APWCGPCQALLPELRKAARALKG-KVKVGSVDCQK 61 (104)
T ss_pred CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECCc
Confidence 3579999999 99999999999999999998843 46666666553
No 198
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.14 E-value=8.4e-06 Score=63.02 Aligned_cols=40 Identities=18% Similarity=0.253 Sum_probs=33.5
Q ss_pred CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEe
Q psy17178 80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAAS 121 (384)
Q Consensus 80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs 121 (384)
+++++|+|| ++||++|+...+.|.++.+++ ..++.++.|.
T Consensus 14 ~~~v~v~f~-~~~C~~C~~~~~~l~~l~~~~-~~~i~~~~vd 53 (97)
T cd02984 14 SKLLVLHFW-APWAEPCKQMNQVFEELAKEA-FPSVLFLSIE 53 (97)
T ss_pred CCEEEEEEE-CCCCHHHHHHhHHHHHHHHHh-CCceEEEEEc
Confidence 689999999 999999999999999999886 3456666654
No 199
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=98.14 E-value=1.9e-05 Score=68.82 Aligned_cols=126 Identities=14% Similarity=0.153 Sum_probs=92.4
Q ss_pred CCCCCCccEEEeeecCccceEEcccc-CCCe-EEEEEee-----CCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCH
Q psy17178 53 LSKPAPFWQGTAVVDGQLKEIKLSDY-YGKY-LVFFFYP-----LDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSH 125 (384)
Q Consensus 53 ~G~~aP~f~l~~~~~~~g~~~~l~~~-~gk~-vvl~f~~-----~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~ 125 (384)
.+..-.+..+... + .+++|.|+ .||- .||+-|. ..-||.|...+..++.....+.++++.+++||..+.
T Consensus 42 ~v~v~~~Y~F~g~---~-G~v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~ 117 (211)
T PF05988_consen 42 MVEVDKDYVFDGP---D-GPVSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPL 117 (211)
T ss_pred CccCCCCeEEeCC---C-CcccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCH
Confidence 3444444555322 4 45999999 7763 4444432 456999999999998888889999999999999999
Q ss_pred HhHHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccce
Q psy17178 126 FTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGG 194 (384)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g 194 (384)
+.+.+|++.+ +++||.+|.....+...|++..++.+. ...-++|+-|. |+|....+.
T Consensus 118 ~~i~afk~rm-------GW~~pw~Ss~gs~Fn~D~~~~~~~~~~----~~g~svF~Rdg-~~VfhTyst 174 (211)
T PF05988_consen 118 EKIEAFKRRM-------GWTFPWYSSYGSDFNYDFGVSFDEGGE----MPGLSVFLRDG-GRVFHTYST 174 (211)
T ss_pred HHHHHHHHhc-------CCCceEEEcCCCcccccccceeccCCC----ceeEEEEEEcC-CEEEEEeec
Confidence 9999999976 899999999989999999986554221 22234566666 777644433
No 200
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.14 E-value=6.2e-06 Score=64.34 Aligned_cols=40 Identities=8% Similarity=0.179 Sum_probs=33.1
Q ss_pred eEEEEEeeCCCCCCchHHHHHHHHhHHHHHh--CCcEEEEEeC
Q psy17178 82 YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ--INTEVVAASV 122 (384)
Q Consensus 82 ~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~--~~v~vi~Vs~ 122 (384)
+++|.|| +.||++|+..+|.+.++++++++ .++.++.|..
T Consensus 18 ~~lv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~ 59 (102)
T cd03005 18 NHFVKFF-APWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDC 59 (102)
T ss_pred CEEEEEE-CCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEEC
Confidence 5899999 99999999999999999999875 3455655543
No 201
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.13 E-value=2.9e-05 Score=58.62 Aligned_cols=71 Identities=18% Similarity=0.216 Sum_probs=54.5
Q ss_pred CeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHHh
Q psy17178 271 KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDY 350 (384)
Q Consensus 271 k~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 350 (384)
++++|.|| +.||+.|....+.++++.++ ..++.++.|+.+. ...+.+.|
T Consensus 11 ~~~ll~~~-~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~~----------------------------~~~~~~~~ 59 (93)
T cd02947 11 KPVVVDFW-APWCGPCKAIAPVLEELAEE--YPKVKFVKVDVDE----------------------------NPELAEEY 59 (93)
T ss_pred CcEEEEEE-CCCChhHHHhhHHHHHHHHH--CCCceEEEEECCC----------------------------ChhHHHhc
Confidence 78899999 99999999999999999876 4567787777653 23445667
Q ss_pred CceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178 351 GVYLSDQGHTLDKYCLECYKMVIVYWFER 379 (384)
Q Consensus 351 gv~~~~~~~~~p~~~lId~~G~i~~~~~~ 379 (384)
++ ...|++++++ +|+++..+..
T Consensus 60 ~v------~~~P~~~~~~-~g~~~~~~~g 81 (93)
T cd02947 60 GV------RSIPTFLFFK-NGKEVDRVVG 81 (93)
T ss_pred Cc------ccccEEEEEE-CCEEEEEEec
Confidence 77 5778877775 6777776654
No 202
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.11 E-value=1.3e-05 Score=64.34 Aligned_cols=42 Identities=12% Similarity=0.171 Sum_probs=33.9
Q ss_pred CCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhC-C-cEEEEEeC
Q psy17178 270 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI-N-TEVVAASV 312 (384)
Q Consensus 270 Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~-~-v~vv~Is~ 312 (384)
+|+++|+|| ++||++|+...|.++++.+++++. + +.+..|+.
T Consensus 19 ~~~vvV~f~-a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~ 62 (114)
T cd02992 19 PSAWLVEFY-ASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDC 62 (114)
T ss_pred CCeEEEEEE-CCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEec
Confidence 479999999 999999999999999999988652 2 45545543
No 203
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.10 E-value=1.5e-05 Score=71.16 Aligned_cols=91 Identities=19% Similarity=0.206 Sum_probs=67.6
Q ss_pred eeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecC
Q psy17178 263 IKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDL 342 (384)
Q Consensus 263 ~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 342 (384)
-.+.++.+++-+++|+ .+.|+.|....|.|+.+.+++ |+.|+.||.|... ...||-...
T Consensus 113 ~~l~~la~~~gL~~F~-~~~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG~~----------------~~~fp~~~~- 171 (215)
T PF13728_consen 113 KALKQLAQKYGLFFFY-RSDCPYCQQQAPILQQFADKY---GFSVIPVSLDGRP----------------IPSFPNPRP- 171 (215)
T ss_pred HHHHHHhhCeEEEEEE-cCCCchhHHHHHHHHHHHHHh---CCEEEEEecCCCC----------------CcCCCCCCC-
Confidence 3445667889999998 778999999999999999988 7999999998421 112222211
Q ss_pred chHHHHHhCceecCCCceeeEEEEEeCCceEEEEEecC
Q psy17178 343 THKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFERG 380 (384)
Q Consensus 343 ~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~ 380 (384)
+..+++.+|+ ..+|++||++++++-.+.--.|
T Consensus 172 ~~g~~~~l~v------~~~Pal~Lv~~~~~~~~pv~~G 203 (215)
T PF13728_consen 172 DPGQAKRLGV------KVTPALFLVNPNTKKWYPVSQG 203 (215)
T ss_pred CHHHHHHcCC------CcCCEEEEEECCCCeEEEEeee
Confidence 4567788999 6899999999998554444334
No 204
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.10 E-value=8.1e-06 Score=64.87 Aligned_cols=45 Identities=13% Similarity=0.251 Sum_probs=40.3
Q ss_pred CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178 79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124 (384)
Q Consensus 79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~ 124 (384)
+||+++|.|| ++|||+|+...|.+.++.+++++.++.+..|..|.
T Consensus 20 ~~k~vlv~f~-a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~ 64 (109)
T cd02993 20 RNQSTLVVLY-APWCPFCQAMEASYEELAEKLAGSNVKVAKFNADG 64 (109)
T ss_pred cCCCEEEEEE-CCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCc
Confidence 5789999999 99999999999999999999987678888887775
No 205
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.08 E-value=5.4e-06 Score=84.88 Aligned_cols=76 Identities=14% Similarity=0.096 Sum_probs=56.2
Q ss_pred cccCCCeEEEEEEeCCCCcCchHhHHHH---HHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecC
Q psy17178 266 SDYYGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDL 342 (384)
Q Consensus 266 ~d~~Gk~vvl~F~~a~~c~~C~~~~~~l---~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 342 (384)
+..+||+++|+|| ++||+.|+...+.. .++.++++ ++.++-|+.++.+ +.
T Consensus 470 a~~~gK~VlVdF~-A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~~~------------------------~~ 522 (571)
T PRK00293 470 AKGKGKPVMLDLY-ADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTANN------------------------AE 522 (571)
T ss_pred HHhcCCcEEEEEE-CCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCCCC------------------------hh
Confidence 3446899999999 99999999876654 55666663 5777777765321 11
Q ss_pred chHHHHHhCceecCCCceeeEEEEEeCCceEE
Q psy17178 343 THKISLDYGVYLSDQGHTLDKYCLECYKMVIV 374 (384)
Q Consensus 343 ~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~ 374 (384)
..++.++|++ ...|+++++|++|+++
T Consensus 523 ~~~l~~~~~v------~g~Pt~~~~~~~G~~i 548 (571)
T PRK00293 523 DVALLKHYNV------LGLPTILFFDAQGQEI 548 (571)
T ss_pred hHHHHHHcCC------CCCCEEEEECCCCCCc
Confidence 2467788998 6889999999999985
No 206
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.07 E-value=1.5e-05 Score=78.74 Aligned_cols=45 Identities=11% Similarity=0.178 Sum_probs=40.9
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 314 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~ 314 (384)
+++++||+|| ++||++|+...|.++++.+++++.++.|+.|+.|.
T Consensus 370 ~~k~VLV~Fy-ApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~ 414 (463)
T TIGR00424 370 RKEAWLVVLY-APWCPFCQAMEASYLELAEKLAGSGVKVAKFRADG 414 (463)
T ss_pred CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCC
Confidence 5789999999 99999999999999999999987778888898874
No 207
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=98.03 E-value=6.2e-05 Score=65.63 Aligned_cols=123 Identities=15% Similarity=0.109 Sum_probs=91.5
Q ss_pred CCCCCceeeeEEcCcceeeecccc-CCC--eEEEEEEe----CCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHh
Q psy17178 245 KPAPFWQGTAVVDGQLKEIKLSDY-YGK--YLVFFFYP----LDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT 317 (384)
Q Consensus 245 ~~~P~f~l~~l~d~~g~~~~l~d~-~Gk--~vvl~F~~----a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~ 317 (384)
..-.+..+. ..+| +++|.|+ .|| .+|..|++ ..-||.|...+..++.....+..+++.++.||..+.++
T Consensus 44 ~v~~~Y~F~---g~~G-~v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~~~ 119 (211)
T PF05988_consen 44 EVDKDYVFD---GPDG-PVSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPLEK 119 (211)
T ss_pred cCCCCeEEe---CCCC-cccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCHHH
Confidence 333345553 2255 4999996 675 34444443 45699999999999888888989999999999999999
Q ss_pred HHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCC-ceeeEEEEEeCCceEEEEEec
Q psy17178 318 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-HTLDKYCLECYKMVIVYWFER 379 (384)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~-~~~p~~~lId~~G~i~~~~~~ 379 (384)
+..|.++. +++||.++..+......|++...+.+ .+.=..|+-| +|+|...|..
T Consensus 120 i~afk~rm-------GW~~pw~Ss~gs~Fn~D~~~~~~~~~~~~g~svF~Rd-g~~VfhTyst 174 (211)
T PF05988_consen 120 IEAFKRRM-------GWTFPWYSSYGSDFNYDFGVSFDEGGEMPGLSVFLRD-GGRVFHTYST 174 (211)
T ss_pred HHHHHHhc-------CCCceEEEcCCCcccccccceeccCCCceeEEEEEEc-CCEEEEEeec
Confidence 99999988 99999999998888889998544322 2222446666 4898887653
No 208
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.03 E-value=4.4e-05 Score=61.59 Aligned_cols=71 Identities=4% Similarity=-0.063 Sum_probs=53.2
Q ss_pred CeEEEEEEeCCCCcC--ch--HhHHHHHHHHHHH-HhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchH
Q psy17178 271 KYLVFFFYPLDFTFV--CP--TEILAFNDRLEEF-HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK 345 (384)
Q Consensus 271 k~vvl~F~~a~~c~~--C~--~~~~~l~~l~~~~-~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 345 (384)
+++|++|| ++||++ |+ ...|.+.++..++ ++.++.++-|++|. +..
T Consensus 28 ~~vvv~f~-a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~----------------------------~~~ 78 (120)
T cd03065 28 VLCLLYHE-PVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK----------------------------DAK 78 (120)
T ss_pred ceEEEEEC-CCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC----------------------------CHH
Confidence 47777777 999987 99 7777788887776 34567777777763 245
Q ss_pred HHHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178 346 ISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE 378 (384)
Q Consensus 346 ~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~ 378 (384)
++++||+ ..+|+.++.. +|+++. +.
T Consensus 79 La~~~~I------~~iPTl~lfk-~G~~v~-~~ 103 (120)
T cd03065 79 VAKKLGL------DEEDSIYVFK-DDEVIE-YD 103 (120)
T ss_pred HHHHcCC------ccccEEEEEE-CCEEEE-ee
Confidence 6778999 7899888885 899876 54
No 209
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.03 E-value=2.6e-05 Score=63.37 Aligned_cols=85 Identities=7% Similarity=-0.074 Sum_probs=51.7
Q ss_pred ccccCCCeEEEEEEeCCCCcCchHhHHH-H--HHHHHHHHhCCcEEEEEeCCCHHhHH-HHhcCccccCCCCCcceeEEe
Q psy17178 265 LSDYYGKYLVFFFYPLDFTFVCPTEILA-F--NDRLEEFHQINTEVVAASVDSHFTHL-AWVNTPRKEGGLGKLKIPLLS 340 (384)
Q Consensus 265 l~d~~Gk~vvl~F~~a~~c~~C~~~~~~-l--~~l~~~~~~~~v~vv~Is~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 340 (384)
.+.-.||+++|+|+ ++||+.|+..-.. + .++.+.+. +++.+|-|..+...... .+.+
T Consensus 10 ~Ak~~~KpVll~f~-a~WC~~Ck~me~~~f~~~~V~~~l~-~~fv~VkvD~~~~~~~~~~~~~----------------- 70 (124)
T cd02955 10 KARREDKPIFLSIG-YSTCHWCHVMEHESFEDEEVAAILN-ENFVPIKVDREERPDVDKIYMN----------------- 70 (124)
T ss_pred HHHHcCCeEEEEEc-cCCCHhHHHHHHHccCCHHHHHHHh-CCEEEEEEeCCcCcHHHHHHHH-----------------
Confidence 34447899999998 9999999876542 2 23444332 34555555443211111 1111
Q ss_pred cCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178 341 DLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE 378 (384)
Q Consensus 341 D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~ 378 (384)
.....||+ ...|+++++|++|++++...
T Consensus 71 ----~~~~~~~~------~G~Pt~vfl~~~G~~~~~~~ 98 (124)
T cd02955 71 ----AAQAMTGQ------GGWPLNVFLTPDLKPFFGGT 98 (124)
T ss_pred ----HHHHhcCC------CCCCEEEEECCCCCEEeeee
Confidence 11224566 57899999999999997553
No 210
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=98.02 E-value=5.5e-05 Score=60.68 Aligned_cols=81 Identities=16% Similarity=0.121 Sum_probs=65.9
Q ss_pred HHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecC----------------
Q psy17178 293 FNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSD---------------- 356 (384)
Q Consensus 293 l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~---------------- 356 (384)
|.+..+++++.|+++++|+.++++..++|++.. .++++++.|++.++.+++|+....
T Consensus 2 L~~~~~~l~~~gv~lv~I~~g~~~~~~~f~~~~-------~~p~~ly~D~~~~lY~~lg~~~~~~~~~~~~~~~~~~~~~ 74 (115)
T PF13911_consen 2 LSRRKPELEAAGVKLVVIGCGSPEGIEKFCELT-------GFPFPLYVDPERKLYKALGLKRGLKWSLLPPALWSGLSNI 74 (115)
T ss_pred hhHhHHHHHHcCCeEEEEEcCCHHHHHHHHhcc-------CCCCcEEEeCcHHHHHHhCCccccccCCCchHHHHHHHHH
Confidence 566788888899999999999997799999775 899999999999999999885311
Q ss_pred --------------CC--ceeeEEEEEeCCceEEEEEecC
Q psy17178 357 --------------QG--HTLDKYCLECYKMVIVYWFERG 380 (384)
Q Consensus 357 --------------~~--~~~p~~~lId~~G~i~~~~~~~ 380 (384)
.| .....+||+|++|+|++.|+..
T Consensus 75 ~~~~~~~~~~~~~~~g~~~q~GG~fv~d~~g~v~~~hr~~ 114 (115)
T PF13911_consen 75 VQSAKNGGIPGNKDQGDGWQLGGTFVFDPGGKVLYEHRDR 114 (115)
T ss_pred HHHHHHcCCCCcccCCCceecCeEEEEcCCCeEEEEEecC
Confidence 00 2244689999999999988753
No 211
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.02 E-value=1.6e-05 Score=62.13 Aligned_cols=44 Identities=14% Similarity=0.202 Sum_probs=35.5
Q ss_pred CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHh-CCcEEEEEeCCC
Q psy17178 80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-INTEVVAASVDS 124 (384)
Q Consensus 80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~-~~v~vi~Vs~d~ 124 (384)
+++++|.|| ++||+.|+...|.+.++.++++. .++.++.|..+.
T Consensus 18 ~~~~~v~f~-a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~ 62 (105)
T cd02998 18 KKDVLVEFY-APWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADE 62 (105)
T ss_pred CCcEEEEEE-CCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCC
Confidence 568999999 99999999999999999999863 346666665443
No 212
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.00 E-value=4.3e-05 Score=61.14 Aligned_cols=63 Identities=14% Similarity=0.048 Sum_probs=47.5
Q ss_pred CCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHH
Q psy17178 270 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD 349 (384)
Q Consensus 270 Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 349 (384)
++.++|+|| ++||++|+...|.++++.+++ ..+.++-|+.|.. ..++++
T Consensus 22 ~~~vvv~f~-a~wC~~C~~~~~~l~~la~~~--~~i~~~~vd~d~~----------------------------~~l~~~ 70 (113)
T cd02975 22 PVDLVVFSS-KEGCQYCEVTKQLLEELSELS--DKLKLEIYDFDED----------------------------KEKAEK 70 (113)
T ss_pred CeEEEEEeC-CCCCCChHHHHHHHHHHHHhc--CceEEEEEeCCcC----------------------------HHHHHH
Confidence 455777777 999999999999999998775 4477777776631 245667
Q ss_pred hCceecCCCceeeEEEEEeC
Q psy17178 350 YGVYLSDQGHTLDKYCLECY 369 (384)
Q Consensus 350 ~gv~~~~~~~~~p~~~lId~ 369 (384)
|++ .+.|++++.+.
T Consensus 71 ~~v------~~vPt~~i~~~ 84 (113)
T cd02975 71 YGV------ERVPTTIFLQD 84 (113)
T ss_pred cCC------CcCCEEEEEeC
Confidence 888 67888777764
No 213
>KOG0907|consensus
Probab=97.99 E-value=9.2e-06 Score=64.00 Aligned_cols=42 Identities=21% Similarity=0.337 Sum_probs=38.2
Q ss_pred CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178 80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124 (384)
Q Consensus 80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~ 124 (384)
+|.+|+.|+ ++||++|+.-.|.+.++.++|.+ +.++-|++|.
T Consensus 21 ~kliVvdF~-a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvde 62 (106)
T KOG0907|consen 21 DKLVVVDFY-ATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVDE 62 (106)
T ss_pred CCeEEEEEE-CCCCcchhhhhhHHHHHHHHCCC--CEEEEEeccc
Confidence 588899998 99999999999999999999965 8888898886
No 214
>KOG0910|consensus
Probab=97.99 E-value=1.5e-05 Score=65.73 Aligned_cols=43 Identities=9% Similarity=0.089 Sum_probs=35.6
Q ss_pred CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178 80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124 (384)
Q Consensus 80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~ 124 (384)
++||+|.|| |.||.+|+.-.|.|+++.++|+ ..+.+.-|++|.
T Consensus 61 ~~PVlVdF~-A~WCgPCk~l~P~l~~~~~~~~-g~~k~~kvdtD~ 103 (150)
T KOG0910|consen 61 DVPVLVDFH-AEWCGPCKMLGPILEELVSEYA-GKFKLYKVDTDE 103 (150)
T ss_pred CCCEEEEEe-cCcCccHhHhhHHHHHHHHhhc-CeEEEEEEcccc
Confidence 579999999 9999999999999999999884 346666665554
No 215
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=97.98 E-value=1.7e-05 Score=62.31 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=30.9
Q ss_pred CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCC
Q psy17178 79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN 114 (384)
Q Consensus 79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~ 114 (384)
++++++|.|| ++|||+|+...|.+.++++++++.+
T Consensus 14 ~~~~vlv~f~-a~wC~~C~~~~p~l~~l~~~~~~~~ 48 (104)
T cd03000 14 KEDIWLVDFY-APWCGHCKKLEPVWNEVGAELKSSG 48 (104)
T ss_pred cCCeEEEEEE-CCCCHHHHhhChHHHHHHHHHHhcC
Confidence 3578999999 9999999999999999999987544
No 216
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=97.98 E-value=1.9e-05 Score=63.12 Aligned_cols=44 Identities=9% Similarity=0.082 Sum_probs=37.6
Q ss_pred CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178 79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124 (384)
Q Consensus 79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~ 124 (384)
.+++++|.|| ++||++|+...|.+.++.+++++. +.+..|+.|.
T Consensus 28 ~~~~vlV~Fy-A~WC~~Ck~l~p~~~~la~~~~~~-v~~~~Vd~d~ 71 (113)
T cd03006 28 DAEVSLVMYY-APWDAQSQAARQEFEQVAQKLSDQ-VLFVAINCWW 71 (113)
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEECCC
Confidence 4578999999 999999999999999999998643 7777887765
No 217
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=97.96 E-value=2.1e-05 Score=61.20 Aligned_cols=41 Identities=12% Similarity=0.139 Sum_probs=33.3
Q ss_pred CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCC-cEEEEE
Q psy17178 79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN-TEVVAA 120 (384)
Q Consensus 79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~-v~vi~V 120 (384)
++++++|.|| ++||+.|+...+.+.++.+.++..+ +.+..+
T Consensus 12 ~~~~~~i~f~-~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (102)
T TIGR01126 12 SNKDVLVEFY-APWCGHCKNLAPEYEKLAKELKGDPDIVLAKV 53 (102)
T ss_pred cCCcEEEEEE-CCCCHHHHhhChHHHHHHHHhccCCceEEEEE
Confidence 6889999999 9999999999999999988876543 444433
No 218
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=2.2e-05 Score=71.74 Aligned_cols=73 Identities=11% Similarity=0.123 Sum_probs=56.1
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL 348 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 348 (384)
+-++|||+|| +.||++|..-+|.|+++..+|+.+ +.+.-|+.|. +..++.
T Consensus 42 ~~~PVlV~fW-ap~~~~c~qL~p~Lekla~~~~G~-f~LakvN~D~----------------------------~p~vAa 91 (304)
T COG3118 42 REVPVLVDFW-APWCGPCKQLTPTLEKLAAEYKGK-FKLAKVNCDA----------------------------EPMVAA 91 (304)
T ss_pred cCCCeEEEec-CCCCchHHHHHHHHHHHHHHhCCc-eEEEEecCCc----------------------------chhHHH
Confidence 4569999999 999999999999999999999743 6666666663 234566
Q ss_pred HhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178 349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFE 378 (384)
Q Consensus 349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~ 378 (384)
+||+ ..+|++|++- +|+-+--|.
T Consensus 92 qfgi------qsIPtV~af~-dGqpVdgF~ 114 (304)
T COG3118 92 QFGV------QSIPTVYAFK-DGQPVDGFQ 114 (304)
T ss_pred HhCc------CcCCeEEEee-CCcCccccC
Confidence 7888 6778777773 777665554
No 219
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.95 E-value=2.1e-05 Score=70.26 Aligned_cols=92 Identities=18% Similarity=0.267 Sum_probs=66.9
Q ss_pred eEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEee
Q psy17178 72 EIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSD 151 (384)
Q Consensus 72 ~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D 151 (384)
.-.+.++.+++.+++|+ ...||+|..+.|.|+.+.+++ |+.|+.||.|..... . ||-...
T Consensus 112 ~~~l~~la~~~gL~~F~-~~~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG~~~~-~---------------fp~~~~ 171 (215)
T PF13728_consen 112 DKALKQLAQKYGLFFFY-RSDCPYCQQQAPILQQFADKY---GFSVIPVSLDGRPIP-S---------------FPNPRP 171 (215)
T ss_pred HHHHHHHhhCeEEEEEE-cCCCchhHHHHHHHHHHHHHh---CCEEEEEecCCCCCc-C---------------CCCCCC
Confidence 34566777889999999 567999999999999999886 899999999963211 2 221111
Q ss_pred CcchhHHhhcCcccCCCCcccceeEEEEEEEecCC-Cccccccee
Q psy17178 152 LTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTS-PVNGYAGGA 195 (384)
Q Consensus 152 ~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G-~v~~~~~g~ 195 (384)
+..+++.+|| ..+|++|++++++ ++.-+.-|.
T Consensus 172 -~~g~~~~l~v-----------~~~Pal~Lv~~~~~~~~pv~~G~ 204 (215)
T PF13728_consen 172 -DPGQAKRLGV-----------KVTPALFLVNPNTKKWYPVSQGF 204 (215)
T ss_pred -CHHHHHHcCC-----------CcCCEEEEEECCCCeEEEEeeec
Confidence 5567888998 3568999999988 444333333
No 220
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=97.88 E-value=2.8e-05 Score=61.48 Aligned_cols=44 Identities=20% Similarity=0.200 Sum_probs=38.0
Q ss_pred CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178 79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124 (384)
Q Consensus 79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~ 124 (384)
.+|+|||.|+ ++|||+|+..-|.|.++.+++++. +.++-|.+|.
T Consensus 13 ~~klVVVdF~-a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVDe 56 (114)
T cd02986 13 AEKVLVLRFG-RDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVDK 56 (114)
T ss_pred CCCEEEEEEe-CCCChhHHHHHHHHHHHHHHccCc-eEEEEEeccc
Confidence 5789999999 999999999999999999998532 7777887775
No 221
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.87 E-value=5.8e-05 Score=68.80 Aligned_cols=91 Identities=18% Similarity=0.189 Sum_probs=67.4
Q ss_pred eeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecC
Q psy17178 263 IKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDL 342 (384)
Q Consensus 263 ~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 342 (384)
-.+.++.+++-+++|+ .+.||.|....|.|+.+.++| |+.|++||+|..- ...||....
T Consensus 143 ~~i~~la~~~gL~fFy-~~~C~~C~~~apil~~fa~~y---gi~v~~VS~DG~~----------------~p~fp~~~~- 201 (256)
T TIGR02739 143 KAIQQLSQSYGLFFFY-RGKSPISQKMAPVIQAFAKEY---GISVIPISVDGTL----------------IPGLPNSRS- 201 (256)
T ss_pred HHHHHHHhceeEEEEE-CCCCchhHHHHHHHHHHHHHh---CCeEEEEecCCCC----------------CCCCCCccC-
Confidence 4455667789999999 677999999999999999988 6999999999421 122333322
Q ss_pred chHHHHHhCceecCCCceeeEEEEEeCCceEEEEEecC
Q psy17178 343 THKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFERG 380 (384)
Q Consensus 343 ~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~ 380 (384)
+...++.+|+ ..+|++||++++.+..+.--.|
T Consensus 202 d~gqa~~l~v------~~~Pal~Lv~~~t~~~~pv~~G 233 (256)
T TIGR02739 202 DSGQAQHLGV------KYFPALYLVNPKSQKMSPLAYG 233 (256)
T ss_pred ChHHHHhcCC------ccCceEEEEECCCCcEEEEeec
Confidence 4556788999 6899999999995544433333
No 222
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=97.86 E-value=4.5e-05 Score=59.02 Aligned_cols=42 Identities=17% Similarity=0.262 Sum_probs=34.9
Q ss_pred CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178 80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD 123 (384)
Q Consensus 80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d 123 (384)
+++++|.|| +.||+.|+...+.|+++.+++.+ ++.++.|..+
T Consensus 14 ~~~vvi~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~ 55 (101)
T TIGR01068 14 DKPVLVDFW-APWCGPCKMIAPILEELAKEYEG-KVKFVKLNVD 55 (101)
T ss_pred CCcEEEEEE-CCCCHHHHHhCHHHHHHHHHhcC-CeEEEEEECC
Confidence 468999999 99999999999999999888753 4777777654
No 223
>PHA02278 thioredoxin-like protein
Probab=97.85 E-value=3.6e-05 Score=60.47 Aligned_cols=44 Identities=14% Similarity=0.062 Sum_probs=36.1
Q ss_pred CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178 79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124 (384)
Q Consensus 79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~ 124 (384)
.++++||.|| ++||++|+...|.+.++.+++. ..+.++-|++|.
T Consensus 13 ~~~~vvV~F~-A~WCgpCk~m~p~l~~l~~~~~-~~~~~~~vdvd~ 56 (103)
T PHA02278 13 QKKDVIVMIT-QDNCGKCEILKSVIPMFQESGD-IKKPILTLNLDA 56 (103)
T ss_pred CCCcEEEEEE-CCCCHHHHhHHHHHHHHHhhhc-CCceEEEEECCc
Confidence 5789999999 9999999999999999987643 235677777764
No 224
>PTZ00102 disulphide isomerase; Provisional
Probab=97.85 E-value=0.00012 Score=73.78 Aligned_cols=70 Identities=7% Similarity=0.121 Sum_probs=51.8
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCC--cEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHH
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN--TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI 346 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~--v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 346 (384)
+++.++|.|| +.||+.|+...|.+.++.+.+++.+ +.+..|..+ .+..+
T Consensus 48 ~~~~~lv~f~-a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~----------------------------~~~~l 98 (477)
T PTZ00102 48 ENEIVLVKFY-APWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDAT----------------------------EEMEL 98 (477)
T ss_pred cCCcEEEEEE-CCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECC----------------------------CCHHH
Confidence 5788999999 9999999999999999988876543 334333322 23456
Q ss_pred HHHhCceecCCCceeeEEEEEeCCceE
Q psy17178 347 SLDYGVYLSDQGHTLDKYCLECYKMVI 373 (384)
Q Consensus 347 ~~~~gv~~~~~~~~~p~~~lId~~G~i 373 (384)
.++|++ ..+|+.++++..+.+
T Consensus 99 ~~~~~i------~~~Pt~~~~~~g~~~ 119 (477)
T PTZ00102 99 AQEFGV------RGYPTIKFFNKGNPV 119 (477)
T ss_pred HHhcCC------CcccEEEEEECCceE
Confidence 777888 678888888765554
No 225
>PLN02309 5'-adenylylsulfate reductase
Probab=97.84 E-value=7.7e-05 Score=73.69 Aligned_cols=44 Identities=11% Similarity=0.202 Sum_probs=40.1
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD 313 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d 313 (384)
++|+++|+|| +.||++|+...|.+.++.++++..++.|..|+.|
T Consensus 364 ~~k~vlV~Fy-ApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d 407 (457)
T PLN02309 364 RKEPWLVVLY-APWCPFCQAMEASYEELAEKLAGSGVKVAKFRAD 407 (457)
T ss_pred CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhccCCeEEEEEECC
Confidence 5789999999 9999999999999999999998778888888877
No 226
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.84 E-value=0.00011 Score=63.60 Aligned_cols=70 Identities=10% Similarity=0.018 Sum_probs=53.0
Q ss_pred CCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHH
Q psy17178 270 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD 349 (384)
Q Consensus 270 Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 349 (384)
++++||+|| +.||++|....|.|.++.++|. .+.++-|+.|.. .++..
T Consensus 83 ~~~VVV~Fy-a~wc~~Ck~m~~~l~~LA~~~~--~vkF~kVd~d~~-----------------------------~l~~~ 130 (175)
T cd02987 83 DTTVVVHIY-EPGIPGCAALNSSLLCLAAEYP--AVKFCKIRASAT-----------------------------GASDE 130 (175)
T ss_pred CcEEEEEEE-CCCCchHHHHHHHHHHHHHHCC--CeEEEEEeccch-----------------------------hhHHh
Confidence 458999999 9999999999999999999874 577777776621 23445
Q ss_pred hCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178 350 YGVYLSDQGHTLDKYCLECYKMVIVYWFE 378 (384)
Q Consensus 350 ~gv~~~~~~~~~p~~~lId~~G~i~~~~~ 378 (384)
|++ ..+|+.+++ ++|+++..+.
T Consensus 131 f~v------~~vPTllly-k~G~~v~~~v 152 (175)
T cd02987 131 FDT------DALPALLVY-KGGELIGNFV 152 (175)
T ss_pred CCC------CCCCEEEEE-ECCEEEEEEe
Confidence 676 567766666 4788887664
No 227
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=97.83 E-value=5.3e-05 Score=58.29 Aligned_cols=44 Identities=14% Similarity=0.166 Sum_probs=34.4
Q ss_pred CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHH-hCCcEEEEEeCC
Q psy17178 79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH-QINTEVVAASVD 123 (384)
Q Consensus 79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~-~~~v~vi~Vs~d 123 (384)
++++++|.|| +.||+.|+...+.+.++.+.++ ..++.++.|+.+
T Consensus 14 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 58 (101)
T cd02961 14 DSKDVLVEFY-APWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCT 58 (101)
T ss_pred CCCcEEEEEE-CCCCHHHHhhhHHHHHHHHHhccCCceEEEEeecc
Confidence 3458999999 9999999999999999988875 345555555443
No 228
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.81 E-value=7.1e-05 Score=67.83 Aligned_cols=85 Identities=19% Similarity=0.166 Sum_probs=63.6
Q ss_pred eeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecC
Q psy17178 263 IKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDL 342 (384)
Q Consensus 263 ~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 342 (384)
-.+.++.+++-|++|+ .+.||.|....|.|+.+.+++ |+.|++||+|-.- ...||... .
T Consensus 136 ~~i~~la~~~GL~fFy-~s~Cp~C~~~aPil~~fa~~y---g~~v~~VS~DG~~----------------~p~fp~~~-~ 194 (248)
T PRK13703 136 QAIAKLAEHYGLMFFY-RGQDPIDGQLAQVINDFRDTY---GLSVIPVSVDGVI----------------NPLLPDSR-T 194 (248)
T ss_pred HHHHHHHhcceEEEEE-CCCCchhHHHHHHHHHHHHHh---CCeEEEEecCCCC----------------CCCCCCCc-c
Confidence 3455667788999999 677999999999999999988 6999999998421 12333322 2
Q ss_pred chHHHHHhCceecCCCceeeEEEEEeCCceEE
Q psy17178 343 THKISLDYGVYLSDQGHTLDKYCLECYKMVIV 374 (384)
Q Consensus 343 ~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~ 374 (384)
+...++.+|+ ..+|++||++++.+-.
T Consensus 195 d~gqa~~l~v------~~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 195 DQGQAQRLGV------KYFPALMLVDPKSGSV 220 (248)
T ss_pred ChhHHHhcCC------cccceEEEEECCCCcE
Confidence 3344578998 6889999999996433
No 229
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=97.81 E-value=4.3e-05 Score=68.54 Aligned_cols=39 Identities=13% Similarity=0.150 Sum_probs=31.9
Q ss_pred CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEE
Q psy17178 80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAA 120 (384)
Q Consensus 80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~V 120 (384)
+++++|.|| ++||++|+...|.++++.+++++ .+.+..|
T Consensus 52 ~~~vlV~Fy-ApWC~~Ck~~~P~~e~la~~~~~-~v~~~~V 90 (224)
T PTZ00443 52 TGPWFVKFY-APWCSHCRKMAPAWERLAKALKG-QVNVADL 90 (224)
T ss_pred CCCEEEEEE-CCCChHHHHHHHHHHHHHHHcCC-CeEEEEe
Confidence 578999999 99999999999999999998863 2444434
No 230
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=97.78 E-value=0.00017 Score=53.76 Aligned_cols=39 Identities=18% Similarity=0.163 Sum_probs=31.2
Q ss_pred EEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC
Q psy17178 273 LVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD 313 (384)
Q Consensus 273 vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d 313 (384)
.|..|| ++||+.|....+.++++.++++. .+.++-|+.+
T Consensus 2 ~v~~f~-~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~vd~~ 40 (82)
T TIGR00411 2 KIELFT-SPTCPYCPAAKRVVEEVAKEMGD-AVEVEYINVM 40 (82)
T ss_pred EEEEEE-CCCCcchHHHHHHHHHHHHHhcC-ceEEEEEeCc
Confidence 355677 99999999999999999988853 3677777664
No 231
>PTZ00102 disulphide isomerase; Provisional
Probab=97.77 E-value=7.1e-05 Score=75.29 Aligned_cols=75 Identities=9% Similarity=0.043 Sum_probs=55.8
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhC-CcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHH
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI-NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKIS 347 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~-~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 347 (384)
.||.++|+|| ++||++|+...|.++++.+.+++. .+.+.-|+.+.. ....
T Consensus 374 ~~k~vlv~f~-a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~----------------------------~~~~ 424 (477)
T PTZ00102 374 SDKDVLLEIY-APWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTAN----------------------------ETPL 424 (477)
T ss_pred CCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCC----------------------------ccch
Confidence 5899999999 999999999999999999988764 355555554421 1124
Q ss_pred HHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178 348 LDYGVYLSDQGHTLDKYCLECYKMVIVYWFE 378 (384)
Q Consensus 348 ~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~ 378 (384)
+.|++ ..+|+.++++++|++...+.
T Consensus 425 ~~~~v------~~~Pt~~~~~~~~~~~~~~~ 449 (477)
T PTZ00102 425 EEFSW------SAFPTILFVKAGERTPIPYE 449 (477)
T ss_pred hcCCC------cccCeEEEEECCCcceeEec
Confidence 56776 67899999998887654444
No 232
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=97.76 E-value=3.8e-05 Score=78.73 Aligned_cols=84 Identities=14% Similarity=0.132 Sum_probs=55.5
Q ss_pred ccccCCCeEEEEEeeCCCCCCchHHHHHH---HHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEee
Q psy17178 75 LSDYYGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSD 151 (384)
Q Consensus 75 l~~~~gk~vvl~f~~~~~cp~C~~~~~~l---~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D 151 (384)
.++.+||+|+|+|| ++||++|+...+.. .+..++++ ++.++-|..+..+ +
T Consensus 469 ~a~~~gK~VlVdF~-A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~~~------------------------~ 521 (571)
T PRK00293 469 EAKGKGKPVMLDLY-ADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTANN------------------------A 521 (571)
T ss_pred HHHhcCCcEEEEEE-CCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCCCC------------------------h
Confidence 34456899999999 99999999865553 45555553 5666666654311 1
Q ss_pred CcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcc--cccceee
Q psy17178 152 LTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVN--GYAGGAL 196 (384)
Q Consensus 152 ~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~--~~~~g~~ 196 (384)
...++.++||+ . ..|+++++|++|++. ....|..
T Consensus 522 ~~~~l~~~~~v--------~---g~Pt~~~~~~~G~~i~~~r~~G~~ 557 (571)
T PRK00293 522 EDVALLKHYNV--------L---GLPTILFFDAQGQEIPDARVTGFM 557 (571)
T ss_pred hhHHHHHHcCC--------C---CCCEEEEECCCCCCcccccccCCC
Confidence 12456777887 2 245677999999883 4455654
No 233
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.76 E-value=9.6e-05 Score=57.63 Aligned_cols=44 Identities=14% Similarity=0.187 Sum_probs=36.9
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHh-CCcEEEEEeCC
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-INTEVVAASVD 313 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~-~~v~vv~Is~d 313 (384)
.++.++|+|| ++||+.|....|.+.++.+.+++ ..+.+..|+.+
T Consensus 17 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~ 61 (104)
T cd02995 17 SDKDVLVEFY-APWCGHCKALAPIYEELAEKLKGDDNVVIAKMDAT 61 (104)
T ss_pred CCCcEEEEEE-CCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCc
Confidence 3588999999 99999999999999999999876 45666666655
No 234
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=97.73 E-value=6.3e-05 Score=62.26 Aligned_cols=44 Identities=11% Similarity=0.135 Sum_probs=35.9
Q ss_pred CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178 79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124 (384)
Q Consensus 79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~ 124 (384)
.+++|||.|| ++||++|+...|.|.++.+++++. +.++-|.+|.
T Consensus 22 ~~~lVVvdF~-A~WCgpCk~m~p~l~~la~~~~~~-~~~~kVDVDe 65 (142)
T PLN00410 22 EERLVVIRFG-HDWDETCMQMDEVLASVAETIKNF-AVIYLVDITE 65 (142)
T ss_pred CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHcCCc-eEEEEEECCC
Confidence 4679999999 999999999999999999887432 5556666664
No 235
>PTZ00062 glutaredoxin; Provisional
Probab=97.70 E-value=0.00015 Score=63.96 Aligned_cols=40 Identities=15% Similarity=0.108 Sum_probs=32.8
Q ss_pred CeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC
Q psy17178 271 KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD 313 (384)
Q Consensus 271 k~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d 313 (384)
+.+|++|| ++|||+|....+.|.++.++|. ++.++-|+.|
T Consensus 18 g~~vl~f~-a~w~~~C~~m~~vl~~l~~~~~--~~~F~~V~~d 57 (204)
T PTZ00062 18 GKLVLYVK-SSKEPEYEQLMDVCNALVEDFP--SLEFYVVNLA 57 (204)
T ss_pred CcEEEEEe-CCCCcchHHHHHHHHHHHHHCC--CcEEEEEccc
Confidence 34688888 9999999999999999999884 4777766543
No 236
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.69 E-value=9.2e-05 Score=67.47 Aligned_cols=83 Identities=19% Similarity=0.267 Sum_probs=62.1
Q ss_pred eEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEee
Q psy17178 72 EIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSD 151 (384)
Q Consensus 72 ~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D 151 (384)
.-.+.++.+++.+++|| ..-||+|....|.++.+.++| |+.|++||+|.... . .||-...
T Consensus 142 ~~~i~~la~~~gL~fFy-~~~C~~C~~~apil~~fa~~y---gi~v~~VS~DG~~~-p---------------~fp~~~~ 201 (256)
T TIGR02739 142 EKAIQQLSQSYGLFFFY-RGKSPISQKMAPVIQAFAKEY---GISVIPISVDGTLI-P---------------GLPNSRS 201 (256)
T ss_pred HHHHHHHHhceeEEEEE-CCCCchhHHHHHHHHHHHHHh---CCeEEEEecCCCCC-C---------------CCCCccC
Confidence 44567777889999999 566999999999999999876 89999999997321 1 1222211
Q ss_pred CcchhHHhhcCcccCCCCcccceeEEEEEEEecCC
Q psy17178 152 LTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTS 186 (384)
Q Consensus 152 ~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G 186 (384)
+...++.+|+ ..+|++|+++++.
T Consensus 202 -d~gqa~~l~v-----------~~~Pal~Lv~~~t 224 (256)
T TIGR02739 202 -DSGQAQHLGV-----------KYFPALYLVNPKS 224 (256)
T ss_pred -ChHHHHhcCC-----------ccCceEEEEECCC
Confidence 3456777888 3478999999984
No 237
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.65 E-value=0.00017 Score=56.14 Aligned_cols=44 Identities=14% Similarity=0.210 Sum_probs=37.1
Q ss_pred CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHh-CCcEEEEEeCCC
Q psy17178 80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-INTEVVAASVDS 124 (384)
Q Consensus 80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~-~~v~vi~Vs~d~ 124 (384)
+++++|+|| ++||++|+...|.+.++.+.+++ ..+.+..|+.+.
T Consensus 18 ~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~ 62 (104)
T cd02995 18 DKDVLVEFY-APWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATA 62 (104)
T ss_pred CCcEEEEEE-CCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcc
Confidence 578999999 99999999999999999999876 356666676654
No 238
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=97.65 E-value=0.00017 Score=57.02 Aligned_cols=32 Identities=13% Similarity=0.263 Sum_probs=28.9
Q ss_pred CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHh
Q psy17178 80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 112 (384)
Q Consensus 80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~ 112 (384)
+++++|.|| ++||++|+...|.+.++.+++++
T Consensus 18 ~~~vlv~F~-a~wC~~C~~~~p~~~~~a~~~~~ 49 (108)
T cd02996 18 AELVLVNFY-ADWCRFSQMLHPIFEEAAAKIKE 49 (108)
T ss_pred CCEEEEEEE-CCCCHHHHhhHHHHHHHHHHHhh
Confidence 578999999 99999999999999999988754
No 239
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.60 E-value=0.00038 Score=61.07 Aligned_cols=41 Identities=17% Similarity=0.250 Sum_probs=35.9
Q ss_pred CCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC
Q psy17178 270 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD 313 (384)
Q Consensus 270 Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d 313 (384)
+++|||.|| ++||++|....|.|.++.++|. .+.|+-|.++
T Consensus 102 ~~~VVV~Fy-a~wc~~C~~m~~~l~~LA~k~~--~vkFvkI~ad 142 (192)
T cd02988 102 DTWVVVHLY-KDGIPLCRLLNQHLSELARKFP--DTKFVKIIST 142 (192)
T ss_pred CCEEEEEEE-CCCCchHHHHHHHHHHHHHHCC--CCEEEEEEhH
Confidence 468999999 9999999999999999999884 5788877765
No 240
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=97.59 E-value=0.00017 Score=59.95 Aligned_cols=138 Identities=14% Similarity=0.110 Sum_probs=83.2
Q ss_pred cCCCCCCccEEEee----ecC---ccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHH-HHhCCcEEEE-EeC
Q psy17178 52 NLSKPAPFWQGTAV----VDG---QLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEE-FHQINTEVVA-ASV 122 (384)
Q Consensus 52 ~~G~~aP~f~l~~~----~~~---~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~-~~~~~v~vi~-Vs~ 122 (384)
.+|++.|..+..+. .++ +.++.+.+.+.||+.||....+. ...-...-|-+.++.+. |.....+..+ |+.
T Consensus 2 ~~~~~~p~V~v~d~Gel~l~~~~~~y~~W~s~~l~GKVrviq~iAGr-~sake~N~~l~~aik~a~f~~d~yqtttIiN~ 80 (160)
T PF09695_consen 2 TLGQPVPPVTVADKGELILNGDKISYQPWNSAQLPGKVRVIQHIAGR-SSAKEMNAPLIEAIKAAKFPHDKYQTTTIINL 80 (160)
T ss_pred cCCCcCCceEecCCceEEEcCCcccccccCccccCCCEEEEEEeccC-CchhHhhHHHHHHHHHcCCCccceeEEEEEec
Confidence 57888898887542 111 23456777788998777766333 22222333444444443 4444566664 467
Q ss_pred CC-HHhHHhhccCccccCCCCcccee-EEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeeeecc
Q psy17178 123 DS-HFTHLAWVNTPRKEGGLGKLKIP-LLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYSRL 200 (384)
Q Consensus 123 d~-~~~~~~~~~~~~~~~~~~~~~~p-~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~p~~ 200 (384)
|+ .--...|.+...+. +...+++. ++.|.+|.+.+++++... +.+++|+|++|+|+.++.|.+.+.+
T Consensus 81 dDAi~gt~~fVrss~e~-~kk~~p~s~~vlD~~G~~~~aW~L~~~----------~SaiiVlDK~G~V~F~k~G~Ls~~E 149 (160)
T PF09695_consen 81 DDAIWGTGGFVRSSAED-SKKEFPWSQFVLDSNGVVRKAWQLQEE----------SSAIIVLDKQGKVQFVKEGALSPAE 149 (160)
T ss_pred ccccccchHHHHHHHHH-hhhhCCCcEEEEcCCCceeccccCCCC----------CceEEEEcCCccEEEEECCCCCHHH
Confidence 65 22222233222111 01145666 679999999999999422 2457799999999999999987765
Q ss_pred C
Q psy17178 201 G 201 (384)
Q Consensus 201 ~ 201 (384)
.
T Consensus 150 v 150 (160)
T PF09695_consen 150 V 150 (160)
T ss_pred H
Confidence 4
No 241
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=97.58 E-value=0.00029 Score=52.97 Aligned_cols=41 Identities=22% Similarity=0.254 Sum_probs=34.3
Q ss_pred CeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178 81 KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124 (384)
Q Consensus 81 k~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~ 124 (384)
++++|.|| +.||+.|....+.++++.++ ..++.++.|+.+.
T Consensus 11 ~~~ll~~~-~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~~ 51 (93)
T cd02947 11 KPVVVDFW-APWCGPCKAIAPVLEELAEE--YPKVKFVKVDVDE 51 (93)
T ss_pred CcEEEEEE-CCCChhHHHhhHHHHHHHHH--CCCceEEEEECCC
Confidence 78899999 99999999999999998877 4567777777654
No 242
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=97.58 E-value=0.00025 Score=56.07 Aligned_cols=44 Identities=14% Similarity=0.030 Sum_probs=34.4
Q ss_pred CCCeEEEEEeeCCC--CCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178 79 YGKYLVFFFYPLDF--TFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124 (384)
Q Consensus 79 ~gk~vvl~f~~~~~--cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~ 124 (384)
.|.++||.|| +.| ||.|....|.|.++.+++.+. +.++-|+.|.
T Consensus 26 ~~~~~v~~f~-~~~~~cp~c~~i~P~leela~e~~~~-v~f~kVdid~ 71 (111)
T cd02965 26 AGGDLVLLLA-GDPVRFPEVLDVAVVLPELLKAFPGR-FRAAVVGRAD 71 (111)
T ss_pred CCCCEEEEec-CCcccCcchhhhHhHHHHHHHHCCCc-EEEEEEECCC
Confidence 5678899999 776 999999999999999988543 4555555554
No 243
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=97.56 E-value=0.00015 Score=58.81 Aligned_cols=41 Identities=7% Similarity=0.058 Sum_probs=35.2
Q ss_pred CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178 80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124 (384)
Q Consensus 80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~ 124 (384)
|+.++|+|+ ++|||+|+.-.|.|.++.++ .++.+..|++|.
T Consensus 23 ~~~~iv~f~-~~~Cp~C~~~~P~l~~~~~~---~~~~~y~vdvd~ 63 (122)
T TIGR01295 23 KETATFFIG-RKTCPYCRKFSGTLSGVVAQ---TKAPIYYIDSEN 63 (122)
T ss_pred CCcEEEEEE-CCCChhHHHHhHHHHHHHHh---cCCcEEEEECCC
Confidence 567888888 99999999999999999887 356788898874
No 244
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.55 E-value=0.00042 Score=47.73 Aligned_cols=43 Identities=14% Similarity=0.197 Sum_probs=34.7
Q ss_pred EEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178 274 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL 319 (384)
Q Consensus 274 vl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~ 319 (384)
++.|| ..||+.|....+.+.++ ++.+.++.++.++.+......
T Consensus 1 l~~~~-~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 43 (69)
T cd01659 1 LVLFY-APWCPFCQALRPVLAEL--ALLNKGVKFEAVDVDEDPALE 43 (69)
T ss_pred CEEEE-CCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcCCChHHh
Confidence 46777 99999999999999998 555678999999988654333
No 245
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=97.54 E-value=0.00029 Score=57.41 Aligned_cols=28 Identities=18% Similarity=-0.007 Sum_probs=21.9
Q ss_pred ccccCCCeEEEEEEeCCCCcCchHhHHHH
Q psy17178 265 LSDYYGKYLVFFFYPLDFTFVCPTEILAF 293 (384)
Q Consensus 265 l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l 293 (384)
.+.-+||+++|+|+ +.||+.|...-...
T Consensus 18 ~Ak~~~Kpvmv~f~-sdwC~~Ck~l~k~~ 45 (130)
T cd02960 18 KAKKSNKPLMVIHH-LEDCPHSQALKKAF 45 (130)
T ss_pred HHHHCCCeEEEEEe-CCcCHhHHHHHHHh
Confidence 33447899999998 99999998765543
No 246
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.54 E-value=0.00051 Score=59.72 Aligned_cols=91 Identities=15% Similarity=0.190 Sum_probs=74.2
Q ss_pred ccceEEcccc-CCCe--EEEEEeeC----CCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCC
Q psy17178 69 QLKEIKLSDY-YGKY--LVFFFYPL----DFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGL 141 (384)
Q Consensus 69 ~g~~~~l~~~-~gk~--vvl~f~~~----~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~ 141 (384)
...+.+|+|+ .||- +|-.|..+ .-||.|..-+..+.-....++..++.+++||--+.+.+.++.+++
T Consensus 60 ~~G~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsRAPl~~l~~~k~rm------ 133 (247)
T COG4312 60 ENGKKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSRAPLEELVAYKRRM------ 133 (247)
T ss_pred CCcchhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEecCcHHHHHHHHHhc------
Confidence 3447999999 6663 33333323 359999999999988888888899999999999999999999876
Q ss_pred CccceeEEeeCcchhHHhhcCcccC
Q psy17178 142 GKLKIPLLSDLTHKISLDYGVYLSD 166 (384)
Q Consensus 142 ~~~~~p~l~D~~~~~~~~ygv~~~~ 166 (384)
++.||.+++.++.+-+.|++...+
T Consensus 134 -GW~f~w~Ss~~s~Fn~Df~vsf~~ 157 (247)
T COG4312 134 -GWQFPWVSSTDSDFNRDFQVSFTE 157 (247)
T ss_pred -CCcceeEeccCcccccccccccch
Confidence 899999999999999999885554
No 247
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.53 E-value=0.00019 Score=65.13 Aligned_cols=86 Identities=19% Similarity=0.211 Sum_probs=61.8
Q ss_pred eEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEee
Q psy17178 72 EIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSD 151 (384)
Q Consensus 72 ~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D 151 (384)
.-.+.++.+++.+++|| .+.||+|....|.++.+.+++ |+.|++||.|.... -.||--.
T Consensus 135 ~~~i~~la~~~GL~fFy-~s~Cp~C~~~aPil~~fa~~y---g~~v~~VS~DG~~~----------------p~fp~~~- 193 (248)
T PRK13703 135 RQAIAKLAEHYGLMFFY-RGQDPIDGQLAQVINDFRDTY---GLSVIPVSVDGVIN----------------PLLPDSR- 193 (248)
T ss_pred HHHHHHHHhcceEEEEE-CCCCchhHHHHHHHHHHHHHh---CCeEEEEecCCCCC----------------CCCCCCc-
Confidence 34466777789999999 566999999999999999876 89999999997321 1233221
Q ss_pred CcchhHHhhcCcccCCCCcccceeEEEEEEEecCC-Ccc
Q psy17178 152 LTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTS-PVN 189 (384)
Q Consensus 152 ~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G-~v~ 189 (384)
.+...++.+|+ ..+|++|+++++. ++.
T Consensus 194 ~d~gqa~~l~v-----------~~~PAl~Lv~~~t~~~~ 221 (248)
T PRK13703 194 TDQGQAQRLGV-----------KYFPALMLVDPKSGSVR 221 (248)
T ss_pred cChhHHHhcCC-----------cccceEEEEECCCCcEE
Confidence 12334467777 3468899999985 443
No 248
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.49 E-value=0.00042 Score=69.20 Aligned_cols=73 Identities=11% Similarity=0.190 Sum_probs=52.9
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCC--cEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHH
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN--TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI 346 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~--v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 346 (384)
++++++|.|| ++||++|....|.+.++.+.+++.+ +.++.|..+. ...+
T Consensus 17 ~~~~~~v~f~-a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~----------------------------~~~l 67 (462)
T TIGR01130 17 SHEFVLVEFY-APWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATE----------------------------EKDL 67 (462)
T ss_pred cCCCEEEEEE-CCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCC----------------------------cHHH
Confidence 5788999999 9999999999999999999887655 5555554432 2356
Q ss_pred HHHhCceecCCCceeeEEEEEeCCceE-EEEE
Q psy17178 347 SLDYGVYLSDQGHTLDKYCLECYKMVI-VYWF 377 (384)
Q Consensus 347 ~~~~gv~~~~~~~~~p~~~lId~~G~i-~~~~ 377 (384)
.+.|++ ..+|+.+++. +|+. +..|
T Consensus 68 ~~~~~i------~~~Pt~~~~~-~g~~~~~~~ 92 (462)
T TIGR01130 68 AQKYGV------SGYPTLKIFR-NGEDSVSDY 92 (462)
T ss_pred HHhCCC------ccccEEEEEe-CCccceeEe
Confidence 677777 5677666664 5554 3434
No 249
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=97.48 E-value=0.00022 Score=57.97 Aligned_cols=44 Identities=9% Similarity=0.009 Sum_probs=28.1
Q ss_pred cCCCeEEEEEeeCCCCCCchHHHHH-H--HHhHHHHHhCCcEEEEEeCC
Q psy17178 78 YYGKYLVFFFYPLDFTFVCPTEILA-F--NDRLEEFHQINTEVVAASVD 123 (384)
Q Consensus 78 ~~gk~vvl~f~~~~~cp~C~~~~~~-l--~~~~~~~~~~~v~vi~Vs~d 123 (384)
-.+|+++|.|+ ++||+.|+.--.. + .++.+.+. +++.+|-|..+
T Consensus 13 ~~~KpVll~f~-a~WC~~Ck~me~~~f~~~~V~~~l~-~~fv~VkvD~~ 59 (124)
T cd02955 13 REDKPIFLSIG-YSTCHWCHVMEHESFEDEEVAAILN-ENFVPIKVDRE 59 (124)
T ss_pred HcCCeEEEEEc-cCCCHhHHHHHHHccCCHHHHHHHh-CCEEEEEEeCC
Confidence 36799999998 9999999965442 2 23444332 35555555443
No 250
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=97.47 E-value=0.00051 Score=54.98 Aligned_cols=42 Identities=12% Similarity=0.171 Sum_probs=33.5
Q ss_pred CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhC-C-cEEEEEeC
Q psy17178 80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI-N-TEVVAASV 122 (384)
Q Consensus 80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~-v~vi~Vs~ 122 (384)
+++++|.|| ++||++|+...|.+.++.+++++. + +.+..|+.
T Consensus 19 ~~~vvV~f~-a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~ 62 (114)
T cd02992 19 PSAWLVEFY-ASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDC 62 (114)
T ss_pred CCeEEEEEE-CCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEec
Confidence 369999999 999999999999999999988642 2 44444543
No 251
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=97.47 E-value=0.00045 Score=55.73 Aligned_cols=43 Identities=0% Similarity=-0.232 Sum_probs=30.0
Q ss_pred CeEEEEEeeCCCCCC--ch--HHHHHHHHhHHHH-HhCCcEEEEEeCCC
Q psy17178 81 KYLVFFFYPLDFTFV--CP--TEILAFNDRLEEF-HQINTEVVAASVDS 124 (384)
Q Consensus 81 k~vvl~f~~~~~cp~--C~--~~~~~l~~~~~~~-~~~~v~vi~Vs~d~ 124 (384)
.++|++|| ++||++ |+ .-.|.+.++.+++ ++.++.+.-|+.|.
T Consensus 28 ~~vvv~f~-a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~ 75 (120)
T cd03065 28 VLCLLYHE-PVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK 75 (120)
T ss_pred ceEEEEEC-CCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC
Confidence 46777777 999988 99 5667777777765 34567766666654
No 252
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=97.46 E-value=0.0003 Score=54.55 Aligned_cols=43 Identities=19% Similarity=0.351 Sum_probs=38.3
Q ss_pred CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178 80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124 (384)
Q Consensus 80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~ 124 (384)
++++||.|| +.||+.|....|.|.++.+++.+ ++.++-|..+.
T Consensus 17 ~~~vvv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~ 59 (103)
T PF00085_consen 17 DKPVVVYFY-APWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDE 59 (103)
T ss_dssp SSEEEEEEE-STTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT
T ss_pred CCCEEEEEe-CCCCCccccccceeccccccccc-ccccchhhhhc
Confidence 589999999 99999999999999999999876 78888887764
No 253
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.46 E-value=0.00082 Score=60.23 Aligned_cols=73 Identities=10% Similarity=-0.027 Sum_probs=51.1
Q ss_pred cCCCeEEEEEEe--CCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchH
Q psy17178 268 YYGKYLVFFFYP--LDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK 345 (384)
Q Consensus 268 ~~Gk~vvl~F~~--a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 345 (384)
.++.+.++.|.. ++||++|+...|.++++.+++. ++++..+.+|.. ...+
T Consensus 17 ~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~--~~~i~~v~vd~~--------------------------~~~~ 68 (215)
T TIGR02187 17 LKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP--KLKLEIYDFDTP--------------------------EDKE 68 (215)
T ss_pred cCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC--CceEEEEecCCc--------------------------ccHH
Confidence 455556666773 3999999999999999998873 456666666632 1246
Q ss_pred HHHHhCceecCCCceeeEEEEEeCCceEEE
Q psy17178 346 ISLDYGVYLSDQGHTLDKYCLECYKMVIVY 375 (384)
Q Consensus 346 ~~~~~gv~~~~~~~~~p~~~lId~~G~i~~ 375 (384)
+++.|++ ..+|+.++++ +|+.+.
T Consensus 69 l~~~~~V------~~~Pt~~~f~-~g~~~~ 91 (215)
T TIGR02187 69 EAEKYGV------ERVPTTIILE-EGKDGG 91 (215)
T ss_pred HHHHcCC------CccCEEEEEe-CCeeeE
Confidence 6778888 6788777766 566653
No 254
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=97.45 E-value=0.0011 Score=48.94 Aligned_cols=27 Identities=15% Similarity=0.086 Sum_probs=24.1
Q ss_pred EEEEEeCCCCcCchHhHHHHHHHHHHHH
Q psy17178 274 VFFFYPLDFTFVCPTEILAFNDRLEEFH 301 (384)
Q Consensus 274 vl~F~~a~~c~~C~~~~~~l~~l~~~~~ 301 (384)
.|.|| ++|||+|....|.++++.++++
T Consensus 2 ~i~~~-a~~C~~C~~~~~~~~~~~~e~~ 28 (76)
T TIGR00412 2 KIQIY-GTGCANCQMTEKNVKKAVEELG 28 (76)
T ss_pred EEEEE-CCCCcCHHHHHHHHHHHHHHcC
Confidence 36788 8999999999999999998874
No 255
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=97.44 E-value=0.0012 Score=54.88 Aligned_cols=125 Identities=8% Similarity=-0.011 Sum_probs=73.8
Q ss_pred CCCCCCCceeeeE----Ec---CcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHH-HHhCCcEEEEE-eCC
Q psy17178 243 VSKPAPFWQGTAV----VD---GQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEE-FHQINTEVVAA-SVD 313 (384)
Q Consensus 243 ~g~~~P~f~l~~l----~d---~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~-~~~~~v~vv~I-s~d 313 (384)
+|+++|.....+- .+ -+.++.+.+.+.||+-||... |--...-...-|.+..+.+. |.....+..+| +.|
T Consensus 3 ~~~~~p~V~v~d~Gel~l~~~~~~y~~W~s~~l~GKVrviq~i-AGr~sake~N~~l~~aik~a~f~~d~yqtttIiN~d 81 (160)
T PF09695_consen 3 LGQPVPPVTVADKGELILNGDKISYQPWNSAQLPGKVRVIQHI-AGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIINLD 81 (160)
T ss_pred CCCcCCceEecCCceEEEcCCcccccccCccccCCCEEEEEEe-ccCCchhHhhHHHHHHHHHcCCCccceeEEEEEecc
Confidence 5667777665430 01 123455666778998777666 33233233334545555444 55555676666 555
Q ss_pred CH-----HhHHHHhcCccccCCCCCccee-EEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178 314 SH-----FTHLAWVNTPRKEGGLGKLKIP-LLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE 378 (384)
Q Consensus 314 ~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~ 378 (384)
+. --.+..++.-++ .+++. ++.|.++.+.++|++.. ..-..+++|++|+|++...
T Consensus 82 DAi~gt~~fVrss~e~~kk-----~~p~s~~vlD~~G~~~~aW~L~~-----~~SaiiVlDK~G~V~F~k~ 142 (160)
T PF09695_consen 82 DAIWGTGGFVRSSAEDSKK-----EFPWSQFVLDSNGVVRKAWQLQE-----ESSAIIVLDKQGKVQFVKE 142 (160)
T ss_pred cccccchHHHHHHHHHhhh-----hCCCcEEEEcCCCceeccccCCC-----CCceEEEEcCCccEEEEEC
Confidence 32 223333333322 34555 67899999999999842 2235789999999999665
No 256
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.40 E-value=0.00022 Score=70.51 Aligned_cols=45 Identities=11% Similarity=0.178 Sum_probs=40.5
Q ss_pred CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178 79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124 (384)
Q Consensus 79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~ 124 (384)
++++++|.|| +.||++|+...|.|.++.+++++.++.++.|..|.
T Consensus 370 ~~k~VLV~Fy-ApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~ 414 (463)
T TIGR00424 370 RKEAWLVVLY-APWCPFCQAMEASYLELAEKLAGSGVKVAKFRADG 414 (463)
T ss_pred CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCC
Confidence 5789999999 99999999999999999999987778888888874
No 257
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=97.39 E-value=0.00086 Score=59.35 Aligned_cols=112 Identities=13% Similarity=0.151 Sum_probs=79.3
Q ss_pred CCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCC---cEEEEEeCCCHHhHHH-
Q psy17178 245 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN---TEVVAASVDSHFTHLA- 320 (384)
Q Consensus 245 ~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~---v~vv~Is~d~~~~~~~- 320 (384)
..+|.+++- | .--..+..|+++||-+. -.+|..|..++..|+.|..++...| |.++.|+--.......
T Consensus 8 ~~~p~W~i~------~-~~pm~~~~G~VtvVALL-~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~ 79 (238)
T PF04592_consen 8 KPPPPWKIG------G-QDPMLNSLGHVTVVALL-QASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKY 79 (238)
T ss_pred CCCCCceEC------C-chHhhhcCCcEEeeeeh-hhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHH
Confidence 467777752 2 44566789999999999 5579999999999999999998765 6788887643322222
Q ss_pred -Hh-cCccccCCCCCcceeEEe-c-CchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178 321 -WV-NTPRKEGGLGKLKIPLLS-D-LTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE 378 (384)
Q Consensus 321 -~~-~~~~~~~~~~~~~~~~~~-D-~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~ 378 (384)
.+ ++. ...+||+- | .+..++..++-- ---.+|+|+-|++.+...
T Consensus 80 ~~l~~r~-------~~~ipVyqq~~~q~dvW~~L~G~-------kdD~~iyDRCGrL~~~i~ 127 (238)
T PF04592_consen 80 WELKRRV-------SEHIPVYQQDENQPDVWELLNGS-------KDDFLIYDRCGRLTYHIP 127 (238)
T ss_pred HHHHHhC-------CCCCceecCCccccCHHHHhCCC-------cCcEEEEeccCcEEEEec
Confidence 22 222 45699986 3 447888888652 113589999999998654
No 258
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=97.36 E-value=0.0015 Score=52.18 Aligned_cols=81 Identities=11% Similarity=0.041 Sum_probs=51.2
Q ss_pred eccccCCCeEEEEEEeCCCCcCchHhHHHH---HHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEe
Q psy17178 264 KLSDYYGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLS 340 (384)
Q Consensus 264 ~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l---~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (384)
..+.-++|+++|+|+ +.||+.|....... .++.+.++ +.+.++.+.+++++
T Consensus 11 ~~Ak~~~K~llv~~~-~~~c~~c~~~~~~vl~~~~v~~~l~-~~~v~~~~d~~~~e------------------------ 64 (114)
T cd02958 11 QEAKSEKKWLLVYLQ-SEDEFDSQVLNRDLWSNESVKEFIR-ENFIFWQCDIDSSE------------------------ 64 (114)
T ss_pred HHHHhhCceEEEEEe-cCCcchHHHHHHHHcCCHHHHHHHH-hCEEEEEecCCCcc------------------------
Confidence 334456899999999 99999997754322 12223332 23333333333221
Q ss_pred cCchHHHHHhCceecCCCceeeEEEEEeC-CceEEEEEe
Q psy17178 341 DLTHKISLDYGVYLSDQGHTLDKYCLECY-KMVIVYWFE 378 (384)
Q Consensus 341 D~~~~~~~~~gv~~~~~~~~~p~~~lId~-~G~i~~~~~ 378 (384)
...+++.|++ ...|+.++||+ +|++++...
T Consensus 65 --~~~~~~~~~~------~~~P~~~~i~~~~g~~l~~~~ 95 (114)
T cd02958 65 --GQRFLQSYKV------DKYPHIAIIDPRTGEVLKVWS 95 (114)
T ss_pred --HHHHHHHhCc------cCCCeEEEEeCccCcEeEEEc
Confidence 1344666777 57899999999 899998655
No 259
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.36 E-value=0.0003 Score=55.10 Aligned_cols=49 Identities=31% Similarity=0.470 Sum_probs=41.3
Q ss_pred EEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178 73 IKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD 123 (384)
Q Consensus 73 ~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d 123 (384)
.....++++++++.|| +.|||+|+..+|.+.++.+++.. .+.++.|...
T Consensus 25 ~~~~~~~~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~ 73 (127)
T COG0526 25 LSLSELKGKPVLVDFW-APWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVD 73 (127)
T ss_pred eehhhcCCceEEEEEE-cCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECC
Confidence 4444445889999999 99999999999999999999865 6788888875
No 260
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=97.35 E-value=0.00081 Score=53.73 Aligned_cols=43 Identities=14% Similarity=0.175 Sum_probs=35.2
Q ss_pred CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178 79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124 (384)
Q Consensus 79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~ 124 (384)
.+++++|.|| +.||++|+..-|.|.++.+++. ++.++-|..|.
T Consensus 21 ~~~~vvV~f~-a~~c~~C~~~~p~l~~la~~~~--~i~f~~Vd~~~ 63 (113)
T cd02989 21 SSERVVCHFY-HPEFFRCKIMDKHLEILAKKHL--ETKFIKVNAEK 63 (113)
T ss_pred CCCcEEEEEE-CCCCccHHHHHHHHHHHHHHcC--CCEEEEEEccc
Confidence 3578999999 9999999999999999998774 46676666654
No 261
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.34 E-value=0.00045 Score=54.03 Aligned_cols=48 Identities=31% Similarity=0.461 Sum_probs=40.9
Q ss_pred eccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC
Q psy17178 264 KLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD 313 (384)
Q Consensus 264 ~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d 313 (384)
......++++++.|| +.||+.|...+|.+.++.+++.. .+.++.++..
T Consensus 26 ~~~~~~~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~ 73 (127)
T COG0526 26 SLSELKGKPVLVDFW-APWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVD 73 (127)
T ss_pred ehhhcCCceEEEEEE-cCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECC
Confidence 334445889999999 99999999999999999999865 6788999885
No 262
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=97.34 E-value=0.00067 Score=52.75 Aligned_cols=42 Identities=14% Similarity=0.187 Sum_probs=34.1
Q ss_pred CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178 80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD 123 (384)
Q Consensus 80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d 123 (384)
+++++|.|| ++||+.|+...|.+.++.+++.. .+.+..+..+
T Consensus 18 ~~~vlv~f~-a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~ 59 (103)
T cd03001 18 DDVWLVEFY-APWCGHCKNLAPEWKKAAKALKG-IVKVGAVDAD 59 (103)
T ss_pred CCcEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECc
Confidence 457899999 99999999999999999988753 4666666554
No 263
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=97.32 E-value=0.00045 Score=55.15 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=33.3
Q ss_pred CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178 80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD 123 (384)
Q Consensus 80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d 123 (384)
+++++|.|| +.||++|+...|.+.++.+++. ++.++-|..+
T Consensus 24 ~~~vvv~F~-a~~c~~C~~l~~~l~~la~~~~--~v~f~~vd~~ 64 (113)
T cd02957 24 GTRVVVHFY-EPGFPRCKILDSHLEELAAKYP--ETKFVKINAE 64 (113)
T ss_pred CCEEEEEEe-CCCCCcHHHHHHHHHHHHHHCC--CcEEEEEEch
Confidence 479999999 9999999999999999998874 4555555444
No 264
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=97.31 E-value=0.00082 Score=53.69 Aligned_cols=42 Identities=14% Similarity=-0.001 Sum_probs=32.0
Q ss_pred CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178 80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124 (384)
Q Consensus 80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~ 124 (384)
++.++|.|| ++|||+|+...|.+.++.+++ ..+++.-|..|.
T Consensus 22 ~~~vvv~f~-a~wC~~C~~~~~~l~~la~~~--~~i~~~~vd~d~ 63 (113)
T cd02975 22 PVDLVVFSS-KEGCQYCEVTKQLLEELSELS--DKLKLEIYDFDE 63 (113)
T ss_pred CeEEEEEeC-CCCCCChHHHHHHHHHHHHhc--CceEEEEEeCCc
Confidence 346777777 999999999999999988765 346666666653
No 265
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=97.30 E-value=0.0016 Score=49.59 Aligned_cols=70 Identities=11% Similarity=-0.049 Sum_probs=48.9
Q ss_pred cccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchH
Q psy17178 266 SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK 345 (384)
Q Consensus 266 ~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 345 (384)
.++++.+-+..|+ +.||+.|+...+.++++.+++ .++.+.-+..|.. ..
T Consensus 8 ~~l~~pv~i~~F~-~~~C~~C~~~~~~~~~l~~~~--~~i~~~~vd~~~~----------------------------~e 56 (89)
T cd03026 8 RRLNGPINFETYV-SLSCHNCPDVVQALNLMAVLN--PNIEHEMIDGALF----------------------------QD 56 (89)
T ss_pred HhcCCCEEEEEEE-CCCCCCcHHHHHHHHHHHHHC--CCceEEEEEhHhC----------------------------HH
Confidence 3566776777777 999999999989888888755 2456655555421 34
Q ss_pred HHHHhCceecCCCceeeEEEEEeCCceEEE
Q psy17178 346 ISLDYGVYLSDQGHTLDKYCLECYKMVIVY 375 (384)
Q Consensus 346 ~~~~~gv~~~~~~~~~p~~~lId~~G~i~~ 375 (384)
+++.||+ ...|+++ + ||++++
T Consensus 57 ~a~~~~V------~~vPt~v-i--dG~~~~ 77 (89)
T cd03026 57 EVEERGI------MSVPAIF-L--NGELFG 77 (89)
T ss_pred HHHHcCC------ccCCEEE-E--CCEEEE
Confidence 5667888 5777765 4 688776
No 266
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=97.20 E-value=0.00057 Score=55.70 Aligned_cols=25 Identities=20% Similarity=-0.002 Sum_probs=20.5
Q ss_pred cCCCeEEEEEeeCCCCCCchHHHHHH
Q psy17178 78 YYGKYLVFFFYPLDFTFVCPTEILAF 103 (384)
Q Consensus 78 ~~gk~vvl~f~~~~~cp~C~~~~~~l 103 (384)
-.||+++|+|+ ++||++|+.--...
T Consensus 21 ~~~Kpvmv~f~-sdwC~~Ck~l~k~~ 45 (130)
T cd02960 21 KSNKPLMVIHH-LEDCPHSQALKKAF 45 (130)
T ss_pred HCCCeEEEEEe-CCcCHhHHHHHHHh
Confidence 36899999988 99999999765543
No 267
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.00062 Score=62.42 Aligned_cols=44 Identities=9% Similarity=0.148 Sum_probs=37.1
Q ss_pred CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178 79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124 (384)
Q Consensus 79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~ 124 (384)
+-+||||+|| +.||++|+.-+|.|.++..+|+. .+.+.-|+.|.
T Consensus 42 ~~~PVlV~fW-ap~~~~c~qL~p~Lekla~~~~G-~f~LakvN~D~ 85 (304)
T COG3118 42 REVPVLVDFW-APWCGPCKQLTPTLEKLAAEYKG-KFKLAKVNCDA 85 (304)
T ss_pred cCCCeEEEec-CCCCchHHHHHHHHHHHHHHhCC-ceEEEEecCCc
Confidence 4579999999 99999999999999999999864 36666676665
No 268
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.18 E-value=0.0026 Score=55.43 Aligned_cols=87 Identities=16% Similarity=0.174 Sum_probs=72.5
Q ss_pred cceeeecccc-CCC--eEEEEEEeCC----CCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCC
Q psy17178 259 QLKEIKLSDY-YGK--YLVFFFYPLD----FTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGL 331 (384)
Q Consensus 259 ~g~~~~l~d~-~Gk--~vvl~F~~a~----~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~ 331 (384)
+| +.+|+|+ .|| .+|-.|+++. -||.|..-+-.+.-....+...+|.+++||.-+.+++..+.++.
T Consensus 61 ~G-~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsRAPl~~l~~~k~rm------ 133 (247)
T COG4312 61 NG-KKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSRAPLEELVAYKRRM------ 133 (247)
T ss_pred Cc-chhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEecCcHHHHHHHHHhc------
Confidence 44 7999996 665 4455555444 48899888888888888888889999999999999999999988
Q ss_pred CCcceeEEecCchHHHHHhCce
Q psy17178 332 GKLKIPLLSDLTHKISLDYGVY 353 (384)
Q Consensus 332 ~~~~~~~~~D~~~~~~~~~gv~ 353 (384)
+++||.+++.++.+-+.|++.
T Consensus 134 -GW~f~w~Ss~~s~Fn~Df~vs 154 (247)
T COG4312 134 -GWQFPWVSSTDSDFNRDFQVS 154 (247)
T ss_pred -CCcceeEeccCcccccccccc
Confidence 999999999999888999773
No 269
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=97.15 E-value=0.00098 Score=59.01 Aligned_cols=111 Identities=13% Similarity=0.195 Sum_probs=74.5
Q ss_pred CCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCC---cEEEEEeCCCHHhHHhh
Q psy17178 55 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN---TEVVAASVDSHFTHLAW 131 (384)
Q Consensus 55 ~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~---v~vi~Vs~d~~~~~~~~ 131 (384)
.++|.+++ +| .-...+.+|+++||.+-.+ +|..|..++..|..+..+++..| +.++.|+.-...+...+
T Consensus 8 ~~~p~W~i------~~-~~pm~~~~G~VtvVALL~a-sc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~ 79 (238)
T PF04592_consen 8 KPPPPWKI------GG-QDPMLNSLGHVTVVALLQA-SCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKY 79 (238)
T ss_pred CCCCCceE------CC-chHhhhcCCcEEeeeehhh-hhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHH
Confidence 56788885 22 4556678999999999955 79999999999999999998765 46667775443222221
Q ss_pred ccCccccCCCCccceeEEe-e-CcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcc
Q psy17178 132 VNTPRKEGGLGKLKIPLLS-D-LTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVN 189 (384)
Q Consensus 132 ~~~~~~~~~~~~~~~p~l~-D-~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~ 189 (384)
.+ ++++. ...||++. | ...++...++--.+ -+||+|+-|++.
T Consensus 80 ~~-l~~r~---~~~ipVyqq~~~q~dvW~~L~G~kd------------D~~iyDRCGrL~ 123 (238)
T PF04592_consen 80 WE-LKRRV---SEHIPVYQQDENQPDVWELLNGSKD------------DFLIYDRCGRLT 123 (238)
T ss_pred HH-HHHhC---CCCCceecCCccccCHHHHhCCCcC------------cEEEEeccCcEE
Confidence 11 10110 33599986 3 34667666665222 257999999986
No 270
>KOG0191|consensus
Probab=97.14 E-value=0.0025 Score=62.32 Aligned_cols=42 Identities=12% Similarity=0.108 Sum_probs=34.5
Q ss_pred CeEEEEEEeCCCCcCchHhHHHHHHHHHHHHh-CCcEEEEEeCC
Q psy17178 271 KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-INTEVVAASVD 313 (384)
Q Consensus 271 k~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~-~~v~vv~Is~d 313 (384)
+..++.|+ +.||++|+...|...++.+.++. .++.+..+..+
T Consensus 163 ~~~lv~f~-aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~ 205 (383)
T KOG0191|consen 163 ADWLVEFY-APWCGHCKKLAPEWEKLAKLLKSKENVELGKIDAT 205 (383)
T ss_pred cceEEEEe-ccccHHhhhcChHHHHHHHHhccCcceEEEeeccc
Confidence 34567776 99999999999999999998874 66777777766
No 271
>PLN02309 5'-adenylylsulfate reductase
Probab=97.11 E-value=0.00071 Score=66.96 Aligned_cols=44 Identities=11% Similarity=0.202 Sum_probs=40.0
Q ss_pred CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178 79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD 123 (384)
Q Consensus 79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d 123 (384)
++|+++|.|| +.||++|+...|.+.++.++++..++.+..|+.|
T Consensus 364 ~~k~vlV~Fy-ApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d 407 (457)
T PLN02309 364 RKEPWLVVLY-APWCPFCQAMEASYEELAEKLAGSGVKVAKFRAD 407 (457)
T ss_pred CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhccCCeEEEEEECC
Confidence 5789999999 9999999999999999999998778888888877
No 272
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.04 E-value=0.0033 Score=46.94 Aligned_cols=50 Identities=20% Similarity=0.153 Sum_probs=34.4
Q ss_pred cccCCCeEEEEEEeCCCCcCchHhHHHH---HHHHHHHHhCCcEEEEEeCCCHHh
Q psy17178 266 SDYYGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVDSHFT 317 (384)
Q Consensus 266 ~d~~Gk~vvl~F~~a~~c~~C~~~~~~l---~~l~~~~~~~~v~vv~Is~d~~~~ 317 (384)
+.-.||+++|+|+ +.||+.|...-..+ .++.+.+. +++..+-|..++.+.
T Consensus 13 A~~~~kpvlv~f~-a~wC~~C~~l~~~~~~~~~v~~~~~-~~fv~v~vd~~~~~~ 65 (82)
T PF13899_consen 13 AKKEGKPVLVDFG-ADWCPPCKKLEREVFSDPEVQEALN-KNFVLVKVDVDDEDP 65 (82)
T ss_dssp HHHHTSEEEEEEE-TTTTHHHHHHHHHTTTSHHHHHHHH-HCSEEEEEETTTHHH
T ss_pred HHHcCCCEEEEEE-CCCCHhHHHHHHHHcCCHHHHHHHH-CCEEEEEEEcCCCCh
Confidence 3346899999998 99999998876655 22333233 557777777765543
No 273
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=97.01 E-value=0.0043 Score=56.66 Aligned_cols=121 Identities=16% Similarity=0.135 Sum_probs=76.7
Q ss_pred CCCCCceeeeEEcCcceeeeccc-cCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHh-C--CcEEEEEeCCCHHhHHH
Q psy17178 245 KPAPFWQGTAVVDGQLKEIKLSD-YYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-I--NTEVVAASVDSHFTHLA 320 (384)
Q Consensus 245 ~~~P~f~l~~l~d~~g~~~~l~d-~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~-~--~v~vv~Is~d~~~~~~~ 320 (384)
...|++...+| +|+.+++.+ ++||+.||..++..|...|...--. ...++|.. . .+++|-|+.-..- ++.
T Consensus 99 lyFP~l~g~tL---~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~--p~~~~~~~~~~~~~q~v~In~~e~~-~k~ 172 (252)
T PF05176_consen 99 LYFPNLQGKTL---AGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTS--PFLEDFLQEPYGRVQIVEINLIENW-LKS 172 (252)
T ss_pred CcCCCCccccC---CCCCcccccccCCceEEEEEeehHHHHHHHHHHhh--HHHHHHhhCCCCceEEEEEecchHH-HHH
Confidence 56899999987 888888877 5999998888878887766554322 33344432 3 6899999975321 111
Q ss_pred H-----hcCccccCCCC-CcceeEEecC--chHHHHHhCceecCCCceeeEEEEEeCCceEEE
Q psy17178 321 W-----VNTPRKEGGLG-KLKIPLLSDL--THKISLDYGVYLSDQGHTLDKYCLECYKMVIVY 375 (384)
Q Consensus 321 ~-----~~~~~~~~~~~-~~~~~~~~D~--~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~ 375 (384)
+ ...+++.-... +..+-+..+. ...+-+++|+... .+..+||||++|+||+
T Consensus 173 ~l~~~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~----~~GYvyLVD~~grIRW 231 (252)
T PF05176_consen 173 WLVKLFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNS----YVGYVYLVDPNGRIRW 231 (252)
T ss_pred HHHHHHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCC----CcCeEEEECCCCeEEe
Confidence 1 12222111111 2334344433 4677888998543 3457899999999998
No 274
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=96.97 E-value=0.003 Score=47.16 Aligned_cols=50 Identities=20% Similarity=0.143 Sum_probs=35.5
Q ss_pred cCCCeEEEEEeeCCCCCCchHHHHHH---HHhHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178 78 YYGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVDSHFTHL 129 (384)
Q Consensus 78 ~~gk~vvl~f~~~~~cp~C~~~~~~l---~~~~~~~~~~~v~vi~Vs~d~~~~~~ 129 (384)
-.||+++|.|+ +.||+.|+..-..+ .++.+.+. +++..+-|..+..+...
T Consensus 15 ~~~kpvlv~f~-a~wC~~C~~l~~~~~~~~~v~~~~~-~~fv~v~vd~~~~~~~~ 67 (82)
T PF13899_consen 15 KEGKPVLVDFG-ADWCPPCKKLEREVFSDPEVQEALN-KNFVLVKVDVDDEDPNA 67 (82)
T ss_dssp HHTSEEEEEEE-TTTTHHHHHHHHHTTTSHHHHHHHH-HCSEEEEEETTTHHHHH
T ss_pred HcCCCEEEEEE-CCCCHhHHHHHHHHcCCHHHHHHHH-CCEEEEEEEcCCCChhH
Confidence 36899999998 99999999876555 23333233 57888888887755443
No 275
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=96.94 E-value=0.0019 Score=50.22 Aligned_cols=43 Identities=21% Similarity=0.220 Sum_probs=36.9
Q ss_pred CCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy17178 270 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 314 (384)
Q Consensus 270 Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~ 314 (384)
|+++++.|+ +.||+.|....+.+.++.++++++ +.++.|+.|.
T Consensus 12 ~~~~~~~f~-~~~~~~~~~~~~~~~~vA~~~~~~-v~f~~vd~~~ 54 (103)
T cd02982 12 GKPLLVLFY-NKDDSESEELRERFKEVAKKFKGK-LLFVVVDADD 54 (103)
T ss_pred CCCEEEEEE-cCChhhHHHHHHHHHHHHHHhCCe-EEEEEEchHh
Confidence 788999998 999999999999999999999743 7777776664
No 276
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=96.93 E-value=0.0021 Score=64.13 Aligned_cols=44 Identities=11% Similarity=0.206 Sum_probs=38.3
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHh-C-CcEEEEEeCC
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-I-NTEVVAASVD 313 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~-~-~v~vv~Is~d 313 (384)
.++.++|+|| ++||++|....|.++++.+.+++ . ++.++.|+.+
T Consensus 363 ~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~ 408 (462)
T TIGR01130 363 ETKDVLVEFY-APWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDAT 408 (462)
T ss_pred CCCeEEEEEE-CCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECC
Confidence 4788999999 99999999999999999999986 2 6778777765
No 277
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=96.92 E-value=0.0013 Score=53.89 Aligned_cols=81 Identities=12% Similarity=0.084 Sum_probs=45.8
Q ss_pred ccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCch
Q psy17178 265 LSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTH 344 (384)
Q Consensus 265 l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 344 (384)
+..+..+..++.|. .+|||-|...+|.|.++.+... ++.+=-|+.|.. .+.++++ +
T Consensus 36 l~~~~~~~~ilvi~-e~WCgD~~~~vP~l~kiae~~p--~i~~~~i~rd~~---~el~~~~--------l---------- 91 (129)
T PF14595_consen 36 LKSIQKPYNILVIT-ETWCGDCARNVPVLAKIAEANP--NIEVRIILRDEN---KELMDQY--------L---------- 91 (129)
T ss_dssp HHT--S-EEEEEE---TT-HHHHHHHHHHHHHHHH-T--TEEEEEE-HHHH---HHHTTTT--------T----------
T ss_pred HHhcCCCcEEEEEE-CCCchhHHHHHHHHHHHHHhCC--CCeEEEEEecCC---hhHHHHH--------H----------
Confidence 34445567777777 9999999999999999999753 455555555532 2333322 0
Q ss_pred HHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178 345 KISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER 379 (384)
Q Consensus 345 ~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~ 379 (384)
..|. ..+|+.+++|++|+.+.++..
T Consensus 92 ----t~g~------~~IP~~I~~d~~~~~lg~wge 116 (129)
T PF14595_consen 92 ----TNGG------RSIPTFIFLDKDGKELGRWGE 116 (129)
T ss_dssp ----T-SS--------SSEEEEE-TT--EEEEEES
T ss_pred ----hCCC------eecCEEEEEcCCCCEeEEEcC
Confidence 0222 578999999999999887753
No 278
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=96.90 E-value=0.0022 Score=51.23 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=47.0
Q ss_pred HHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchhHHhhcC
Q psy17178 103 FNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGV 162 (384)
Q Consensus 103 l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv 162 (384)
|.+..+++++.|+.+++|+..+++..++|++.. ..++|++.|++.++.+++|+
T Consensus 2 L~~~~~~l~~~gv~lv~I~~g~~~~~~~f~~~~-------~~p~~ly~D~~~~lY~~lg~ 54 (115)
T PF13911_consen 2 LSRRKPELEAAGVKLVVIGCGSPEGIEKFCELT-------GFPFPLYVDPERKLYKALGL 54 (115)
T ss_pred hhHhHHHHHHcCCeEEEEEcCCHHHHHHHHhcc-------CCCCcEEEeCcHHHHHHhCC
Confidence 566778888899999999999987799999753 78999999999999999998
No 279
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=96.84 E-value=0.0024 Score=55.17 Aligned_cols=42 Identities=10% Similarity=0.026 Sum_probs=35.0
Q ss_pred CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178 80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124 (384)
Q Consensus 80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~ 124 (384)
+++|||.|| +.||++|+...|.|.++.+++. ++.++-|+.+.
T Consensus 83 ~~~VVV~Fy-a~wc~~Ck~m~~~l~~LA~~~~--~vkF~kVd~d~ 124 (175)
T cd02987 83 DTTVVVHIY-EPGIPGCAALNSSLLCLAAEYP--AVKFCKIRASA 124 (175)
T ss_pred CcEEEEEEE-CCCCchHHHHHHHHHHHHHHCC--CeEEEEEeccc
Confidence 358999999 9999999999999999998874 47777776664
No 280
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=96.83 E-value=0.0031 Score=46.71 Aligned_cols=39 Identities=18% Similarity=0.163 Sum_probs=31.0
Q ss_pred EEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178 83 LVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD 123 (384)
Q Consensus 83 vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d 123 (384)
.|..|| +.|||+|+...+.+.++.++++. .+.++-|+.+
T Consensus 2 ~v~~f~-~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~vd~~ 40 (82)
T TIGR00411 2 KIELFT-SPTCPYCPAAKRVVEEVAKEMGD-AVEVEYINVM 40 (82)
T ss_pred EEEEEE-CCCCcchHHHHHHHHHHHHHhcC-ceEEEEEeCc
Confidence 356777 99999999999999999988753 3666667654
No 281
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=96.82 E-value=0.0021 Score=58.70 Aligned_cols=135 Identities=12% Similarity=0.084 Sum_probs=82.0
Q ss_pred CCCCCCccEEEeeecCccceEEcccc-CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHH-hC--CcEEEEEeCCCHHh-
Q psy17178 53 LSKPAPFWQGTAVVDGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH-QI--NTEVVAASVDSHFT- 127 (384)
Q Consensus 53 ~G~~aP~f~l~~~~~~~g~~~~l~~~-~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~-~~--~v~vi~Vs~d~~~~- 127 (384)
..-..|+|...++ +|+.+++.+. +||+.||..+...|--.|....-. ...++|. .. .++++-|+.-+.--
T Consensus 97 kAlyFP~l~g~tL---~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~--p~~~~~~~~~~~~~q~v~In~~e~~~k 171 (252)
T PF05176_consen 97 KALYFPNLQGKTL---AGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTS--PFLEDFLQEPYGRVQIVEINLIENWLK 171 (252)
T ss_pred hCCcCCCCccccC---CCCCcccccccCCceEEEEEeehHHHHHHHHHHhh--HHHHHHhhCCCCceEEEEEecchHHHH
Confidence 4456799999888 8888887766 899888877756665555543222 2333443 23 68999999865211
Q ss_pred ---HHhhccCccccCCCC-ccceeEEeeC--cchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeeeeccC
Q psy17178 128 ---HLAWVNTPRKEGGLG-KLKIPLLSDL--THKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYSRLG 201 (384)
Q Consensus 128 ---~~~~~~~~~~~~~~~-~~~~p~l~D~--~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~p~~~ 201 (384)
..-+...+++..... .-.|-+..+. ..++-+++|+.... +..+||||.+|+||+.-.|.-.+.+.
T Consensus 172 ~~l~~~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~---------~GYvyLVD~~grIRWagsG~At~~E~ 242 (252)
T PF05176_consen 172 SWLVKLFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNSY---------VGYVYLVDPNGRIRWAGSGPATPEEL 242 (252)
T ss_pred HHHHHHHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCC---------cCeEEEECCCCeEEeCccCCCCHHHH
Confidence 111222221111100 1123333333 45777888885544 34689999999999998887665543
No 282
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=96.78 E-value=0.0037 Score=49.89 Aligned_cols=84 Identities=15% Similarity=0.088 Sum_probs=50.0
Q ss_pred cccCCCeEEEEEeeCCCCCCchHHHHH-H--HHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeC
Q psy17178 76 SDYYGKYLVFFFYPLDFTFVCPTEILA-F--NDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDL 152 (384)
Q Consensus 76 ~~~~gk~vvl~f~~~~~cp~C~~~~~~-l--~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~ 152 (384)
+.-++|+++|+|+ +.||+.|..-... | .++.+.+++ ++..+.+..++++ .
T Consensus 13 Ak~~~K~llv~~~-~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~~~e-~------------------------ 65 (114)
T cd02958 13 AKSEKKWLLVYLQ-SEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDIDSSE-G------------------------ 65 (114)
T ss_pred HHhhCceEEEEEe-cCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCCCcc-H------------------------
Confidence 3446799999999 9999999875432 2 223333322 3444444444322 1
Q ss_pred cchhHHhhcCcccCCCCcccceeEEEEEEEec-CCCcccccceeeee
Q psy17178 153 THKISLDYGVYLSDQGPVRGSLLSTAIFVYAL-TSPVNGYAGGALYS 198 (384)
Q Consensus 153 ~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~-~G~v~~~~~g~~~p 198 (384)
.++++.|++ ...|+++++|+ +|++.....|...+
T Consensus 66 -~~~~~~~~~-----------~~~P~~~~i~~~~g~~l~~~~G~~~~ 100 (114)
T cd02958 66 -QRFLQSYKV-----------DKYPHIAIIDPRTGEVLKVWSGNITP 100 (114)
T ss_pred -HHHHHHhCc-----------cCCCeEEEEeCccCcEeEEEcCCCCH
Confidence 224555555 22456788999 89888777776643
No 283
>PHA02125 thioredoxin-like protein
Probab=96.77 E-value=0.009 Score=43.78 Aligned_cols=22 Identities=9% Similarity=0.282 Sum_probs=18.4
Q ss_pred EEEEEeCCCCcCchHhHHHHHHH
Q psy17178 274 VFFFYPLDFTFVCPTEILAFNDR 296 (384)
Q Consensus 274 vl~F~~a~~c~~C~~~~~~l~~l 296 (384)
+++|| ++||++|+...|.|.++
T Consensus 2 iv~f~-a~wC~~Ck~~~~~l~~~ 23 (75)
T PHA02125 2 IYLFG-AEWCANCKMVKPMLANV 23 (75)
T ss_pred EEEEE-CCCCHhHHHHHHHHHHH
Confidence 67888 99999999988887543
No 284
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=96.66 E-value=0.0058 Score=41.74 Aligned_cols=44 Identities=14% Similarity=0.190 Sum_probs=35.2
Q ss_pred EEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHh
Q psy17178 84 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA 130 (384)
Q Consensus 84 vl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~ 130 (384)
++.|| ..||+.|....+.+.++ ++...++.++.++.+.......
T Consensus 1 l~~~~-~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 44 (69)
T cd01659 1 LVLFY-APWCPFCQALRPVLAEL--ALLNKGVKFEAVDVDEDPALEK 44 (69)
T ss_pred CEEEE-CCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcCCChHHhh
Confidence 46777 88999999999999998 4556789999999887554433
No 285
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=96.65 E-value=0.0091 Score=42.46 Aligned_cols=38 Identities=16% Similarity=0.040 Sum_probs=28.4
Q ss_pred EEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC
Q psy17178 273 LVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD 313 (384)
Q Consensus 273 vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d 313 (384)
-+..|+ ++|||.|....+.|+++.+++ .++.+.-+.+|
T Consensus 2 ~v~~f~-~~~C~~C~~~~~~l~~l~~~~--~~i~~~~id~~ 39 (67)
T cd02973 2 NIEVFV-SPTCPYCPDAVQAANRIAALN--PNISAEMIDAA 39 (67)
T ss_pred EEEEEE-CCCCCCcHHHHHHHHHHHHhC--CceEEEEEEcc
Confidence 356677 999999999999998886643 45666666654
No 286
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=96.64 E-value=0.0048 Score=47.91 Aligned_cols=44 Identities=20% Similarity=0.223 Sum_probs=36.9
Q ss_pred CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178 79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124 (384)
Q Consensus 79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~ 124 (384)
.|+++++.|+ +.||+.|....+.+.++.+++++ .+.++-|+.|.
T Consensus 11 ~~~~~~~~f~-~~~~~~~~~~~~~~~~vA~~~~~-~v~f~~vd~~~ 54 (103)
T cd02982 11 SGKPLLVLFY-NKDDSESEELRERFKEVAKKFKG-KLLFVVVDADD 54 (103)
T ss_pred cCCCEEEEEE-cCChhhHHHHHHHHHHHHHHhCC-eEEEEEEchHh
Confidence 3789999999 99999999999999999999974 36676666654
No 287
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=96.56 E-value=0.0057 Score=45.02 Aligned_cols=27 Identities=15% Similarity=0.086 Sum_probs=23.8
Q ss_pred EEEEeeCCCCCCchHHHHHHHHhHHHHH
Q psy17178 84 VFFFYPLDFTFVCPTEILAFNDRLEEFH 111 (384)
Q Consensus 84 vl~f~~~~~cp~C~~~~~~l~~~~~~~~ 111 (384)
.|.|| ++|||+|....|.+.++.+++.
T Consensus 2 ~i~~~-a~~C~~C~~~~~~~~~~~~e~~ 28 (76)
T TIGR00412 2 KIQIY-GTGCANCQMTEKNVKKAVEELG 28 (76)
T ss_pred EEEEE-CCCCcCHHHHHHHHHHHHHHcC
Confidence 37788 8999999999999999998864
No 288
>smart00594 UAS UAS domain.
Probab=96.51 E-value=0.015 Score=47.04 Aligned_cols=74 Identities=8% Similarity=-0.062 Sum_probs=47.3
Q ss_pred eccccCCCeEEEEEEeCCCCcCchHhHHHHH---HHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEe
Q psy17178 264 KLSDYYGKYLVFFFYPLDFTFVCPTEILAFN---DRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLS 340 (384)
Q Consensus 264 ~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~---~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (384)
..+.-.+|.++|+|+ +.||+.|.......- ++.+.++ +++.++.+++++++
T Consensus 21 ~~Ak~~~K~~lv~~~-~~~c~~c~~~~r~vl~~~~V~~~i~-~~fv~~~~dv~~~e------------------------ 74 (122)
T smart00594 21 QEASRQRRLLWLYLH-SQDSPDSQVFNRDVLCNEAVKSLIR-ENFIFWQVDVDTSE------------------------ 74 (122)
T ss_pred HHHHhhcCCEEEEEe-CCCCchHHHHHHHHccCHHHHHHHH-cCEEEEEecCCChh------------------------
Confidence 334446899999999 999999987554321 1222332 34444444444332
Q ss_pred cCchHHHHHhCceecCCCceeeEEEEEeCCc
Q psy17178 341 DLTHKISLDYGVYLSDQGHTLDKYCLECYKM 371 (384)
Q Consensus 341 D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G 371 (384)
..++++.|++ ...|+.+++|++|
T Consensus 75 --g~~l~~~~~~------~~~P~~~~l~~~~ 97 (122)
T smart00594 75 --GQRVSQFYKL------DSFPYVAIVDPRT 97 (122)
T ss_pred --HHHHHHhcCc------CCCCEEEEEecCC
Confidence 1456777887 5789999999998
No 289
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=96.43 E-value=0.0055 Score=53.80 Aligned_cols=41 Identities=17% Similarity=0.250 Sum_probs=35.0
Q ss_pred CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178 80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD 123 (384)
Q Consensus 80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d 123 (384)
+++|||.|| ++||++|+...|.|.++.++|. .+.++-|..+
T Consensus 102 ~~~VVV~Fy-a~wc~~C~~m~~~l~~LA~k~~--~vkFvkI~ad 142 (192)
T cd02988 102 DTWVVVHLY-KDGIPLCRLLNQHLSELARKFP--DTKFVKIIST 142 (192)
T ss_pred CCEEEEEEE-CCCCchHHHHHHHHHHHHHHCC--CCEEEEEEhH
Confidence 468999999 9999999999999999999884 4777777665
No 290
>KOG0908|consensus
Probab=96.42 E-value=0.0037 Score=55.71 Aligned_cols=47 Identities=23% Similarity=0.272 Sum_probs=39.5
Q ss_pred ccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178 75 LSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124 (384)
Q Consensus 75 l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~ 124 (384)
|+..-||.++|.|. ++||.+|....|.+.++.++| .+..++=|.+|.
T Consensus 16 ls~ag~k~v~Vdft-a~wCGPCk~IaP~Fs~lankY--p~aVFlkVdVd~ 62 (288)
T KOG0908|consen 16 LSAAGGKLVVVDFT-ASWCGPCKRIAPIFSDLANKY--PGAVFLKVDVDE 62 (288)
T ss_pred hhccCceEEEEEEE-ecccchHHhhhhHHHHhhhhC--cccEEEEEeHHH
Confidence 44445689999999 999999999999999999999 467777777765
No 291
>KOG4498|consensus
Probab=96.40 E-value=0.023 Score=48.62 Aligned_cols=118 Identities=9% Similarity=0.061 Sum_probs=81.9
Q ss_pred cCcceeeecccc-CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcc
Q psy17178 257 DGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLK 335 (384)
Q Consensus 257 d~~g~~~~l~d~-~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~ 335 (384)
+..|+.+...++ +.+..+|.|-+-.-|-.|+.+...|..+.+-+.+.|+..++|-...-.....+.++- ...
T Consensus 36 ~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg~g~~~~~~~f~~q~-------~f~ 108 (197)
T KOG4498|consen 36 DSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVGPGSHVQFEDFWDQT-------YFS 108 (197)
T ss_pred hhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEeccceeecchhhccc-------Ccc
Confidence 558999999997 556678899888889999999999999977778899999999865444344444432 334
Q ss_pred eeEEecCchHHHHHhCcee----------------------cC----CCceeeEEEEEeCCceEEEEEecCC
Q psy17178 336 IPLLSDLTHKISLDYGVYL----------------------SD----QGHTLDKYCLECYKMVIVYWFERGN 381 (384)
Q Consensus 336 ~~~~~D~~~~~~~~~gv~~----------------------~~----~~~~~p~~~lId~~G~i~~~~~~~~ 381 (384)
-.++.|++..+.+.++... .. .+...-..+++.+.|+|.+++...+
T Consensus 109 gevylD~~~~~Y~~le~k~~~~g~l~~g~~~~~~Ka~~~gv~gn~~gd~~~~gG~~~V~~G~~il~~h~dk~ 180 (197)
T KOG4498|consen 109 GEVYLDPHRGFYKPLEFKRAEMGFLRPGTDAAAVKAKAVGVEGNLEGDGLLSGGVLVVGRGKKILFIHVDKE 180 (197)
T ss_pred eeEEEcCccceechhhhhcccccccccccHHHHHHHhhcccCCCcccChHHhCCeEEEecCCeEEEEEecCC
Confidence 4677777754443332211 11 0123445789998889999887654
No 292
>KOG0908|consensus
Probab=96.29 E-value=0.0044 Score=55.21 Aligned_cols=42 Identities=21% Similarity=0.274 Sum_probs=35.5
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD 313 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d 313 (384)
-||.++|.|. ++||.+|....|.++.+..+| .+..++=|.+|
T Consensus 20 g~k~v~Vdft-a~wCGPCk~IaP~Fs~lankY--p~aVFlkVdVd 61 (288)
T KOG0908|consen 20 GGKLVVVDFT-ASWCGPCKRIAPIFSDLANKY--PGAVFLKVDVD 61 (288)
T ss_pred CceEEEEEEE-ecccchHHhhhhHHHHhhhhC--cccEEEEEeHH
Confidence 4689999999 999999999999999999999 45556666554
No 293
>PTZ00062 glutaredoxin; Provisional
Probab=96.12 E-value=0.0097 Score=52.60 Aligned_cols=39 Identities=15% Similarity=0.113 Sum_probs=31.4
Q ss_pred CeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeC
Q psy17178 81 KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV 122 (384)
Q Consensus 81 k~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~ 122 (384)
+.+|++|| ++|||.|+...+-|.++.++|. ++.++-|..
T Consensus 18 g~~vl~f~-a~w~~~C~~m~~vl~~l~~~~~--~~~F~~V~~ 56 (204)
T PTZ00062 18 GKLVLYVK-SSKEPEYEQLMDVCNALVEDFP--SLEFYVVNL 56 (204)
T ss_pred CcEEEEEe-CCCCcchHHHHHHHHHHHHHCC--CcEEEEEcc
Confidence 34778888 9999999999999999999884 466666643
No 294
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=96.00 E-value=0.031 Score=39.67 Aligned_cols=38 Identities=16% Similarity=0.068 Sum_probs=28.0
Q ss_pred EEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178 84 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124 (384)
Q Consensus 84 vl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~ 124 (384)
|..|+ +.|||+|....+.|+++.+.. .++++.-|..|.
T Consensus 3 v~~f~-~~~C~~C~~~~~~l~~l~~~~--~~i~~~~id~~~ 40 (67)
T cd02973 3 IEVFV-SPTCPYCPDAVQAANRIAALN--PNISAEMIDAAE 40 (67)
T ss_pred EEEEE-CCCCCCcHHHHHHHHHHHHhC--CceEEEEEEccc
Confidence 56677 999999999888888886543 356666666553
No 295
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=95.56 E-value=0.037 Score=42.04 Aligned_cols=45 Identities=16% Similarity=-0.026 Sum_probs=30.3
Q ss_pred cccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178 76 SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD 123 (384)
Q Consensus 76 ~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d 123 (384)
.++++...+..|+ +.||++|+...+.+.++.+++. ++.+..+..|
T Consensus 8 ~~l~~pv~i~~F~-~~~C~~C~~~~~~~~~l~~~~~--~i~~~~vd~~ 52 (89)
T cd03026 8 RRLNGPINFETYV-SLSCHNCPDVVQALNLMAVLNP--NIEHEMIDGA 52 (89)
T ss_pred HhcCCCEEEEEEE-CCCCCCcHHHHHHHHHHHHHCC--CceEEEEEhH
Confidence 3555555555555 9999999998888888776542 4555555444
No 296
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=95.47 E-value=0.0081 Score=49.12 Aligned_cols=47 Identities=17% Similarity=0.148 Sum_probs=29.5
Q ss_pred ccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178 75 LSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124 (384)
Q Consensus 75 l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~ 124 (384)
+..+..+..++.|. .+|||-|..++|.|.++.+... ++++=.++.|.
T Consensus 36 l~~~~~~~~ilvi~-e~WCgD~~~~vP~l~kiae~~p--~i~~~~i~rd~ 82 (129)
T PF14595_consen 36 LKSIQKPYNILVIT-ETWCGDCARNVPVLAKIAEANP--NIEVRIILRDE 82 (129)
T ss_dssp HHT--S-EEEEEE---TT-HHHHHHHHHHHHHHHH-T--TEEEEEE-HHH
T ss_pred HHhcCCCcEEEEEE-CCCchhHHHHHHHHHHHHHhCC--CCeEEEEEecC
Confidence 33445556777777 9999999999999999998743 56655565554
No 297
>KOG4498|consensus
Probab=95.42 E-value=0.037 Score=47.35 Aligned_cols=86 Identities=9% Similarity=0.089 Sum_probs=65.3
Q ss_pred ccceEEcccc-CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCcccee
Q psy17178 69 QLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIP 147 (384)
Q Consensus 69 ~g~~~~l~~~-~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p 147 (384)
.|+.+...++ +.+..+|.|.+-.-|-.|+.+...|.++..-+++.|+.+++|-..+....+.|.+.- ...=.
T Consensus 38 rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg~g~~~~~~~f~~q~-------~f~ge 110 (197)
T KOG4498|consen 38 RGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVGPGSHVQFEDFWDQT-------YFSGE 110 (197)
T ss_pred cCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEeccceeecchhhccc-------Cccee
Confidence 7899999999 556788999989999999999999999977778899999999876654444444421 23346
Q ss_pred EEeeCcchhHHhhc
Q psy17178 148 LLSDLTHKISLDYG 161 (384)
Q Consensus 148 ~l~D~~~~~~~~yg 161 (384)
++.|++..+.+.++
T Consensus 111 vylD~~~~~Y~~le 124 (197)
T KOG4498|consen 111 VYLDPHRGFYKPLE 124 (197)
T ss_pred EEEcCccceechhh
Confidence 88888766554444
No 298
>PHA02125 thioredoxin-like protein
Probab=95.40 E-value=0.047 Score=39.92 Aligned_cols=21 Identities=10% Similarity=0.327 Sum_probs=17.9
Q ss_pred EEEEeeCCCCCCchHHHHHHHH
Q psy17178 84 VFFFYPLDFTFVCPTEILAFND 105 (384)
Q Consensus 84 vl~f~~~~~cp~C~~~~~~l~~ 105 (384)
++.|+ ++||++|+.-.|.|.+
T Consensus 2 iv~f~-a~wC~~Ck~~~~~l~~ 22 (75)
T PHA02125 2 IYLFG-AEWCANCKMVKPMLAN 22 (75)
T ss_pred EEEEE-CCCCHhHHHHHHHHHH
Confidence 67788 9999999998888754
No 299
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=94.92 E-value=0.053 Score=39.37 Aligned_cols=33 Identities=3% Similarity=0.113 Sum_probs=23.3
Q ss_pred EEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178 84 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124 (384)
Q Consensus 84 vl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~ 124 (384)
+..|| ++|||.|++..+.|.++ ++..-.|+++.
T Consensus 2 v~ly~-~~~C~~C~~~~~~L~~~-------~~~~~~idi~~ 34 (77)
T TIGR02200 2 ITVYG-TTWCGYCAQLMRTLDKL-------GAAYEWVDIEE 34 (77)
T ss_pred EEEEE-CCCChhHHHHHHHHHHc-------CCceEEEeCcC
Confidence 45677 99999999987766553 45555566654
No 300
>KOG1278|consensus
Probab=94.87 E-value=0.0012 Score=64.95 Aligned_cols=73 Identities=37% Similarity=0.701 Sum_probs=66.2
Q ss_pred cccceeEEEEEEEecCCCcccccceeeeeccCCccceeeeeeechhhHHHHHHHHHHHHHHHHhhhccccCCC
Q psy17178 170 VRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAWIRHCLLSACLVPVLVCATALVVNFIAMYYHASRAIPF 242 (384)
Q Consensus 170 ~~g~~~~~~~~vid~~G~v~~~~~g~~~p~~~g~~wk~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (384)
.||..+|.++++.-=-|.+.+|+++++|+.+.|+.||++.++++.+.|+++++++++++++.+...++++.|.
T Consensus 360 ~RGsLmT~~~~l~v~~G~~agY~s~rlyk~~~g~~wk~~~~lta~l~PGivf~~~f~lN~~lW~~~SSgAvPF 432 (628)
T KOG1278|consen 360 SRGSLMTAMVLLFVFMGFVAGYVSARLYKTFKGREWKRNAILTAFLFPGIVFAIFFVLNFFLWGKHSSGAVPF 432 (628)
T ss_pred ccccHHHHHHHHHHHHHHhhhhhhhhhHhhhcCCcchhhHHhhhhhcchHHHHHHHHHHHHhhcCCCCCcccH
Confidence 5777777777777778999999999999999999999999999999999999999999999999998888774
No 301
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=94.65 E-value=0.13 Score=47.10 Aligned_cols=31 Identities=10% Similarity=0.005 Sum_probs=24.7
Q ss_pred ccCCCeEEEEEEeCCCCcCchHhHHHHHHHHH
Q psy17178 267 DYYGKYLVFFFYPLDFTFVCPTEILAFNDRLE 298 (384)
Q Consensus 267 d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~ 298 (384)
.-.+|.+|+.|. -..||.|++...++.++.+
T Consensus 114 ~~~ak~~I~vFt-Dp~CpyC~kl~~~l~~~~~ 144 (251)
T PRK11657 114 KADAPRIVYVFA-DPNCPYCKQFWQQARPWVD 144 (251)
T ss_pred CCCCCeEEEEEE-CCCChhHHHHHHHHHHHhh
Confidence 335788887887 8899999999988877654
No 302
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=94.64 E-value=0.083 Score=38.28 Aligned_cols=34 Identities=3% Similarity=0.114 Sum_probs=23.4
Q ss_pred EEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCH
Q psy17178 274 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSH 315 (384)
Q Consensus 274 vl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~ 315 (384)
+..|| ++|||.|+...+.|.++ ++.+-.++++..
T Consensus 2 v~ly~-~~~C~~C~~~~~~L~~~-------~~~~~~idi~~~ 35 (77)
T TIGR02200 2 ITVYG-TTWCGYCAQLMRTLDKL-------GAAYEWVDIEED 35 (77)
T ss_pred EEEEE-CCCChhHHHHHHHHHHc-------CCceEEEeCcCC
Confidence 45677 99999999988776544 455555666543
No 303
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=94.49 E-value=0.13 Score=36.67 Aligned_cols=54 Identities=7% Similarity=0.056 Sum_probs=32.8
Q ss_pred EEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC-HHhHHhhccCccccCCCCccceeEEeeC
Q psy17178 85 FFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-HFTHLAWVNTPRKEGGLGKLKIPLLSDL 152 (384)
Q Consensus 85 l~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~-~~~~~~~~~~~~~~~~~~~~~~p~l~D~ 152 (384)
..|+ ++|||.|+...+.|.+ .++.+.-++.+. ++..+++.+.. + ....|.+.+.
T Consensus 3 ~lf~-~~~C~~C~~~~~~l~~-------~~i~~~~vdi~~~~~~~~~~~~~~----~--~~~vP~~~~~ 57 (74)
T TIGR02196 3 KVYT-TPWCPPCKKAKEYLTS-------KGIAFEEIDVEKDSAAREEVLKVL----G--QRGVPVIVIG 57 (74)
T ss_pred EEEc-CCCChhHHHHHHHHHH-------CCCeEEEEeccCCHHHHHHHHHHh----C--CCcccEEEEC
Confidence 4455 9999999987766644 577777787765 33333444322 1 2346666553
No 304
>smart00594 UAS UAS domain.
Probab=94.37 E-value=0.17 Score=40.76 Aligned_cols=47 Identities=9% Similarity=-0.097 Sum_probs=29.4
Q ss_pred ccCCCeEEEEEeeCCCCCCchHHHHHH---HHhHHHHHhCCcEEEEEeCCCH
Q psy17178 77 DYYGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVDSH 125 (384)
Q Consensus 77 ~~~gk~vvl~f~~~~~cp~C~~~~~~l---~~~~~~~~~~~v~vi~Vs~d~~ 125 (384)
.-.+|+++|+|+ +.||+.|..-.... .++.+.++ .++.++.+.+++.
T Consensus 24 k~~~K~~lv~~~-~~~c~~c~~~~r~vl~~~~V~~~i~-~~fv~~~~dv~~~ 73 (122)
T smart00594 24 SRQRRLLWLYLH-SQDSPDSQVFNRDVLCNEAVKSLIR-ENFIFWQVDVDTS 73 (122)
T ss_pred HhhcCCEEEEEe-CCCCchHHHHHHHHccCHHHHHHHH-cCEEEEEecCCCh
Confidence 335789999999 99999999765432 22333332 3555555555443
No 305
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.98 E-value=0.14 Score=42.61 Aligned_cols=96 Identities=13% Similarity=0.053 Sum_probs=61.0
Q ss_pred cCCCeEEEEEeeCCCCCCchHH---HHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcc
Q psy17178 78 YYGKYLVFFFYPLDFTFVCPTE---ILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTH 154 (384)
Q Consensus 78 ~~gk~vvl~f~~~~~cp~C~~~---~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~ 154 (384)
-.+|+.++.|- ..-|++|..- +-.-.++.+-++. .+.++-+.......+. |.. +.. ...-...
T Consensus 40 ~~~Kylllmfe-s~~C~yC~~~KKd~~~~krlrEylk~-hf~~~~l~i~~skpv~-f~~---------g~k--ee~~s~~ 105 (182)
T COG2143 40 PNDKYLLLMFE-SNGCSYCERFKKDLKNVKRLREYLKE-HFSAYYLNISYSKPVL-FKV---------GDK--EEKMSTE 105 (182)
T ss_pred ccCcEEEEEEc-CCCChHHHHHHHhhcchHHHHHHHhh-CeEEEEEEeccCcceE-eec---------Cce--eeeecHH
Confidence 35788888888 8889999864 3333455555543 3555655544322221 211 111 2222356
Q ss_pred hhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeeee
Q psy17178 155 KISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYS 198 (384)
Q Consensus 155 ~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~p 198 (384)
++++.|+| ..+|..++.|.+|+-.....|++.|
T Consensus 106 ELa~kf~v-----------rstPtfvFfdk~Gk~Il~lPGY~pp 138 (182)
T COG2143 106 ELAQKFAV-----------RSTPTFVFFDKTGKTILELPGYMPP 138 (182)
T ss_pred HHHHHhcc-----------ccCceEEEEcCCCCEEEecCCCCCH
Confidence 89999999 3466788999999998888888854
No 306
>KOG0190|consensus
Probab=93.70 E-value=0.075 Score=52.81 Aligned_cols=34 Identities=18% Similarity=0.301 Sum_probs=31.4
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhC
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI 303 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~ 303 (384)
.+|=|+|-|+ |.||++|..-.|.+++|.++|++.
T Consensus 383 e~KdVLvEfy-APWCgHCk~laP~~eeLAe~~~~~ 416 (493)
T KOG0190|consen 383 EGKDVLVEFY-APWCGHCKALAPIYEELAEKYKDD 416 (493)
T ss_pred cccceEEEEc-CcccchhhhhhhHHHHHHHHhcCC
Confidence 4788999999 999999999999999999999874
No 307
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=93.60 E-value=0.27 Score=34.89 Aligned_cols=32 Identities=6% Similarity=0.046 Sum_probs=23.5
Q ss_pred EEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy17178 275 FFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 314 (384)
Q Consensus 275 l~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~ 314 (384)
..|+ ++|||.|....+.|.+ .++.+.-++++.
T Consensus 3 ~lf~-~~~C~~C~~~~~~l~~-------~~i~~~~vdi~~ 34 (74)
T TIGR02196 3 KVYT-TPWCPPCKKAKEYLTS-------KGIAFEEIDVEK 34 (74)
T ss_pred EEEc-CCCChhHHHHHHHHHH-------CCCeEEEEeccC
Confidence 3455 9999999987766543 467888787764
No 308
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=93.47 E-value=0.072 Score=53.61 Aligned_cols=41 Identities=17% Similarity=0.293 Sum_probs=29.0
Q ss_pred ccCCCeEEEEEeeCCCCCCchHHHH-HHHHhHHHHHhCCcEEE
Q psy17178 77 DYYGKYLVFFFYPLDFTFVCPTEIL-AFNDRLEEFHQINTEVV 118 (384)
Q Consensus 77 ~~~gk~vvl~f~~~~~cp~C~~~~~-~l~~~~~~~~~~~v~vi 118 (384)
+-++|||+|+|+ ++||-.|+..-+ .+.+-...++-.|+..+
T Consensus 471 ~~~~~pVmlDfy-AdWCvtCK~~e~~tfsd~~v~~~~~~~vlL 512 (569)
T COG4232 471 EAKAKPVMLDFY-ADWCVTCKENEKYTFSDPQVQQALQDVVLL 512 (569)
T ss_pred hCCCCcEEEeee-hhHHHHhHhhhhhccCcHHHHHhcCCeEEE
Confidence 335579999999 999999986433 44555555555676655
No 309
>KOG0190|consensus
Probab=93.01 E-value=0.11 Score=51.65 Aligned_cols=34 Identities=18% Similarity=0.301 Sum_probs=31.4
Q ss_pred CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhC
Q psy17178 79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI 113 (384)
Q Consensus 79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~ 113 (384)
.+|-|+|-|+ +.||+.|..-.|.++++.+.|++.
T Consensus 383 e~KdVLvEfy-APWCgHCk~laP~~eeLAe~~~~~ 416 (493)
T KOG0190|consen 383 EGKDVLVEFY-APWCGHCKALAPIYEELAEKYKDD 416 (493)
T ss_pred cccceEEEEc-CcccchhhhhhhHHHHHHHHhcCC
Confidence 4688999999 999999999999999999999874
No 310
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=92.92 E-value=0.28 Score=39.39 Aligned_cols=94 Identities=11% Similarity=0.019 Sum_probs=57.6
Q ss_pred eccccCCC-eEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecC
Q psy17178 264 KLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDL 342 (384)
Q Consensus 264 ~l~d~~Gk-~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 342 (384)
.|+++++| -+||.|-+...-+.-..++..|++....+.++++.++.+.-+..... ..++-.+.
T Consensus 2 ~L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~----------------~~~~~~~~ 65 (118)
T PF13778_consen 2 PLDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSP----------------GKPLSPED 65 (118)
T ss_pred ChhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccc----------------cCcCCHHH
Confidence 35667765 34556554444555566777777777778888888888854432110 01111122
Q ss_pred chHHHHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178 343 THKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE 378 (384)
Q Consensus 343 ~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~ 378 (384)
...+.+.|++. ...-+.+||++||.+..++.
T Consensus 66 ~~~lr~~l~~~-----~~~f~~vLiGKDG~vK~r~~ 96 (118)
T PF13778_consen 66 IQALRKRLRIP-----PGGFTVVLIGKDGGVKLRWP 96 (118)
T ss_pred HHHHHHHhCCC-----CCceEEEEEeCCCcEEEecC
Confidence 25777888873 12346799999999998755
No 311
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=92.73 E-value=0.23 Score=39.86 Aligned_cols=46 Identities=17% Similarity=0.215 Sum_probs=32.9
Q ss_pred CCCeEEEEEeeC------CCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCH
Q psy17178 79 YGKYLVFFFYPL------DFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSH 125 (384)
Q Consensus 79 ~gk~vvl~f~~~------~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~ 125 (384)
.|++++|.|..+ +|||.|+.-.|.+.+..+.. ..+..+|-|.+.+.
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~-~~~~~lv~v~VG~r 69 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKA-PENARLVYVEVGDR 69 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH--STTEEEEEEE---H
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhC-CCCceEEEEEcCCH
Confidence 567888888833 59999999999999888773 34778888877653
No 312
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=92.41 E-value=0.7 Score=36.94 Aligned_cols=78 Identities=15% Similarity=0.098 Sum_probs=49.0
Q ss_pred eccccCCCeEEEEEEeCC----CCcCchHhH--HHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCccee
Q psy17178 264 KLSDYYGKYLVFFFYPLD----FTFVCPTEI--LAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIP 337 (384)
Q Consensus 264 ~l~d~~Gk~vvl~F~~a~----~c~~C~~~~--~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~ 337 (384)
..+.-.+|.++|+++ +. ||..|+..+ |++.+..+ .++-+++.++++++
T Consensus 11 ~~ak~e~K~llVylh-s~~~~~~~~fc~~~l~~~~v~~~ln----~~fv~w~~dv~~~e--------------------- 64 (116)
T cd02991 11 NDAKQELRFLLVYLH-GDDHQDTDEFCRNTLCAPEVIEYIN----TRMLFWACSVAKPE--------------------- 64 (116)
T ss_pred HHHHhhCCEEEEEEe-CCCCccHHHHHHHHcCCHHHHHHHH----cCEEEEEEecCChH---------------------
Confidence 344457899999999 77 788886543 33333332 34556666666543
Q ss_pred EEecCchHHHHHhCceecCCCceeeEEEEE---eCCceEEEEEe
Q psy17178 338 LLSDLTHKISLDYGVYLSDQGHTLDKYCLE---CYKMVIVYWFE 378 (384)
Q Consensus 338 ~~~D~~~~~~~~~gv~~~~~~~~~p~~~lI---d~~G~i~~~~~ 378 (384)
..++++.+++ ...|...+| +.+.+|+....
T Consensus 65 -----g~~la~~l~~------~~~P~~~~l~~~~~~~~vv~~i~ 97 (116)
T cd02991 65 -----GYRVSQALRE------RTYPFLAMIMLKDNRMTIVGRLE 97 (116)
T ss_pred -----HHHHHHHhCC------CCCCEEEEEEecCCceEEEEEEe
Confidence 1466777777 577888888 55666666443
No 313
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=92.20 E-value=0.36 Score=38.74 Aligned_cols=46 Identities=17% Similarity=0.212 Sum_probs=33.1
Q ss_pred CCCeEEEEEEe------CCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCH
Q psy17178 269 YGKYLVFFFYP------LDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSH 315 (384)
Q Consensus 269 ~Gk~vvl~F~~------a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~ 315 (384)
.|+.+.|.|.- -+|||.|....|.+++...... .+..+|-+.+.+.
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~-~~~~lv~v~VG~r 69 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAP-ENARLVYVEVGDR 69 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-S-TTEEEEEEE---H
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCC-CCceEEEEEcCCH
Confidence 56788888873 2599999999999999988743 4678888888753
No 314
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=91.86 E-value=0.24 Score=50.02 Aligned_cols=42 Identities=19% Similarity=0.281 Sum_probs=27.4
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHH-HHHHHHHHHhCCcEEEEEe
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILA-FNDRLEEFHQINTEVVAAS 311 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~-l~~l~~~~~~~~v~vv~Is 311 (384)
++|+|+|+|+ |.||-.|+..-+. +++.+..++-.++..+=+.
T Consensus 473 ~~~pVmlDfy-AdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaD 515 (569)
T COG4232 473 KAKPVMLDFY-ADWCVTCKENEKYTFSDPQVQQALQDVVLLQAD 515 (569)
T ss_pred CCCcEEEeee-hhHHHHhHhhhhhccCcHHHHHhcCCeEEEEee
Confidence 4569999999 9999999754333 3344444554565554443
No 315
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.79 E-value=0.7 Score=38.52 Aligned_cols=92 Identities=11% Similarity=0.011 Sum_probs=57.2
Q ss_pred ccCCCeEEEEEEeCCCCcCchHhH---HHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCc
Q psy17178 267 DYYGKYLVFFFYPLDFTFVCPTEI---LAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLT 343 (384)
Q Consensus 267 d~~Gk~vvl~F~~a~~c~~C~~~~---~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 343 (384)
...+|++++.|- ...|+.|...- -.-.++++-+. ..+.++-+.......+. |.. +.. ...-..
T Consensus 39 ~~~~Kylllmfe-s~~C~yC~~~KKd~~~~krlrEylk-~hf~~~~l~i~~skpv~-f~~---------g~k--ee~~s~ 104 (182)
T COG2143 39 SPNDKYLLLMFE-SNGCSYCERFKKDLKNVKRLREYLK-EHFSAYYLNISYSKPVL-FKV---------GDK--EEKMST 104 (182)
T ss_pred CccCcEEEEEEc-CCCChHHHHHHHhhcchHHHHHHHh-hCeEEEEEEeccCcceE-eec---------Cce--eeeecH
Confidence 347899999998 88899997543 33334444443 33556666543321110 111 111 222234
Q ss_pred hHHHHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178 344 HKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE 378 (384)
Q Consensus 344 ~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~ 378 (384)
.++++.|++ ..+|+.++.|++|+-+..-+
T Consensus 105 ~ELa~kf~v------rstPtfvFfdk~Gk~Il~lP 133 (182)
T COG2143 105 EELAQKFAV------RSTPTFVFFDKTGKTILELP 133 (182)
T ss_pred HHHHHHhcc------ccCceEEEEcCCCCEEEecC
Confidence 689999999 78999999999999887443
No 316
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=91.73 E-value=0.4 Score=40.63 Aligned_cols=29 Identities=7% Similarity=0.072 Sum_probs=19.3
Q ss_pred eeeeccccCCCeEEEEEEeCCCCcCchHhH
Q psy17178 261 KEIKLSDYYGKYLVFFFYPLDFTFVCPTEI 290 (384)
Q Consensus 261 ~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~ 290 (384)
+.+..+.-.+|+++|++. .+||.-|..+.
T Consensus 28 ea~~~Ak~e~KpIfl~ig-~~~C~wChvM~ 56 (163)
T PF03190_consen 28 EALEKAKKENKPIFLSIG-YSWCHWCHVME 56 (163)
T ss_dssp HHHHHHHHHT--EEEEEE--TT-HHHHHHH
T ss_pred HHHHHHHhcCCcEEEEEE-ecCCcchhhhc
Confidence 445666667899999999 99999997654
No 317
>KOG1277|consensus
Probab=91.48 E-value=0.022 Score=55.14 Aligned_cols=73 Identities=58% Similarity=1.006 Sum_probs=63.3
Q ss_pred cccceeEEEEEEEecCCCcccccceeeeeccCCccceeeeeeechhhHHHHHHHHHHHHHHHHhhhccccCCC
Q psy17178 170 VRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAWIRHCLLSACLVPVLVCATALVVNFIAMYYHASRAIPF 242 (384)
Q Consensus 170 ~~g~~~~~~~~vid~~G~v~~~~~g~~~p~~~g~~wk~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (384)
.||...+.++++-....-|.+|..|-+|.+..|++|.+++++.+.++|..++....+++.....+.+..+.|.
T Consensus 324 ~rGal~saaI~vYAlTs~i~GY~~gs~Y~r~gG~~Wik~m~lta~Lfp~~~~~t~~~~N~vai~y~at~AlPf 396 (593)
T KOG1277|consen 324 ERGALLSAAIVVYALTSPINGYVSGSFYARLGGRRWIKNMLLTASLFPVPVFGTAFLLNTVAIAYGATAALPF 396 (593)
T ss_pred cchHHHHHHHHHHHhcccccccccceeeehhccHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccccCc
Confidence 3777777777788888889999999999999999999999999999999999888888888888887777653
No 318
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=91.41 E-value=0.51 Score=37.71 Aligned_cols=30 Identities=20% Similarity=0.050 Sum_probs=23.2
Q ss_pred CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHh
Q psy17178 80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 112 (384)
Q Consensus 80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~ 112 (384)
.+.++|-|+ ++| |.|.+ .|.+.++..++..
T Consensus 18 ~~~vlV~F~-A~~-Pwc~k-~~~~~~LA~e~~~ 47 (116)
T cd03007 18 FKYSLVKFD-TAY-PYGEK-HEAFTRLAESSAS 47 (116)
T ss_pred CCcEEEEEe-CCC-CCCCC-hHHHHHHHHHHHh
Confidence 467889999 977 66775 5888888888854
No 319
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=91.22 E-value=0.92 Score=41.06 Aligned_cols=37 Identities=14% Similarity=-0.043 Sum_probs=27.9
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEE
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAA 310 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~I 310 (384)
.||.+|+.|. -..||.|++..+++.++.+ .++.|.-+
T Consensus 106 ~~k~~I~vFt-Dp~CpyCkkl~~~l~~~~~----~~v~v~~~ 142 (232)
T PRK10877 106 QEKHVITVFT-DITCGYCHKLHEQMKDYNA----LGITVRYL 142 (232)
T ss_pred CCCEEEEEEE-CCCChHHHHHHHHHHHHhc----CCeEEEEE
Confidence 5788888887 8999999999888876643 45665443
No 320
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=91.02 E-value=0.76 Score=36.73 Aligned_cols=31 Identities=19% Similarity=0.026 Sum_probs=23.3
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHh
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 302 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~ 302 (384)
+.+.+||-|+ ++| |-|.. +|...++.+++..
T Consensus 17 ~~~~vlV~F~-A~~-Pwc~k-~~~~~~LA~e~~~ 47 (116)
T cd03007 17 KFKYSLVKFD-TAY-PYGEK-HEAFTRLAESSAS 47 (116)
T ss_pred cCCcEEEEEe-CCC-CCCCC-hHHHHHHHHHHHh
Confidence 4578999999 966 55554 5888888888854
No 321
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=90.74 E-value=0.33 Score=38.95 Aligned_cols=92 Identities=11% Similarity=0.049 Sum_probs=60.6
Q ss_pred EccccCCC-eEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeC
Q psy17178 74 KLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDL 152 (384)
Q Consensus 74 ~l~~~~gk-~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~ 152 (384)
.|+++++| .+||.|-|..--+.-..++..|.+....+.++++.++.|.-+...... .++-.+.
T Consensus 2 ~L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~----------------~~~~~~~ 65 (118)
T PF13778_consen 2 PLDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPG----------------KPLSPED 65 (118)
T ss_pred ChhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCcccccc----------------CcCCHHH
Confidence 36778775 567777777766766778888888888888899888888544422111 1111122
Q ss_pred cchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccc
Q psy17178 153 THKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGY 191 (384)
Q Consensus 153 ~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~ 191 (384)
...+-+.|++. + ....+++|++||.++..
T Consensus 66 ~~~lr~~l~~~--~--------~~f~~vLiGKDG~vK~r 94 (118)
T PF13778_consen 66 IQALRKRLRIP--P--------GGFTVVLIGKDGGVKLR 94 (118)
T ss_pred HHHHHHHhCCC--C--------CceEEEEEeCCCcEEEe
Confidence 35677778873 1 12467899999999644
No 322
>KOG0912|consensus
Probab=90.72 E-value=0.38 Score=44.45 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=29.6
Q ss_pred CCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhC
Q psy17178 270 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI 303 (384)
Q Consensus 270 Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~ 303 (384)
...|+|+|+ |.||+..+.-.|-+++..++++++
T Consensus 13 ~elvfv~Fy-AdWCrFSq~L~piF~EAa~~~~~e 45 (375)
T KOG0912|consen 13 NELVFVNFY-ADWCRFSQMLKPIFEEAAAKFKQE 45 (375)
T ss_pred ceEEeeeee-hhhchHHHHHhHHHHHHHHHHHHh
Confidence 468999999 999999999999999999988763
No 323
>KOG3425|consensus
Probab=90.70 E-value=0.67 Score=36.78 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=36.8
Q ss_pred cccc-CCCeEEEEEeeC-------CCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178 75 LSDY-YGKYLVFFFYPL-------DFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124 (384)
Q Consensus 75 l~~~-~gk~vvl~f~~~-------~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~ 124 (384)
++++ +|+.+.+.|..+ +|||.|..-.|-+.+..+.. ..++.+|-|-+.+
T Consensus 19 ~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~a-p~~~~~v~v~VG~ 75 (128)
T KOG3425|consen 19 LKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHA-PEDVHFVHVYVGN 75 (128)
T ss_pred HHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhC-CCceEEEEEEecC
Confidence 3444 667777777744 59999999999998888743 4578888887765
No 324
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=90.70 E-value=1.8 Score=31.49 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=16.4
Q ss_pred CCCCcCchHhHHHHHHHHHHH
Q psy17178 280 LDFTFVCPTEILAFNDRLEEF 300 (384)
Q Consensus 280 a~~c~~C~~~~~~l~~l~~~~ 300 (384)
+..||.|+.....++++.+.+
T Consensus 7 ~~~C~~C~~~~~~~~~~~~~~ 27 (76)
T PF13192_consen 7 SPGCPYCPELVQLLKEAAEEL 27 (76)
T ss_dssp CSSCTTHHHHHHHHHHHHHHT
T ss_pred CCCCCCcHHHHHHHHHHHHhc
Confidence 777999997777777777655
No 325
>KOG0191|consensus
Probab=89.97 E-value=0.66 Score=45.33 Aligned_cols=33 Identities=9% Similarity=0.122 Sum_probs=29.3
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHh
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 302 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~ 302 (384)
.++..+|.|| ++||++|....|...++...+++
T Consensus 46 ~~~~~~v~fy-apwc~~c~~l~~~~~~~~~~l~~ 78 (383)
T KOG0191|consen 46 DDSPWLVEFY-APWCGHCKKLAPTYKKLAKALKG 78 (383)
T ss_pred cCCceEEEEE-CCCCcchhhhchHHHHHHHHhcC
Confidence 4568899999 99999999999999999988865
No 326
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=89.93 E-value=0.31 Score=35.88 Aligned_cols=35 Identities=14% Similarity=0.058 Sum_probs=25.9
Q ss_pred EEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC
Q psy17178 275 FFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD 313 (384)
Q Consensus 275 l~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d 313 (384)
+.|+ ++|||.|....+.|.++. .. ..+.++-|+.+
T Consensus 2 ~~f~-~~~Cp~C~~~~~~L~~~~--i~-~~~~~~~v~~~ 36 (84)
T TIGR02180 2 VVFS-KSYCPYCKKAKEILAKLN--VK-PAYEVVELDQL 36 (84)
T ss_pred EEEE-CCCChhHHHHHHHHHHcC--CC-CCCEEEEeeCC
Confidence 4566 999999999999888876 21 23677777765
No 327
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=89.83 E-value=0.91 Score=32.01 Aligned_cols=55 Identities=9% Similarity=-0.005 Sum_probs=31.6
Q ss_pred EEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC-HHhHHhhccCccccCCCCccceeEEeeCc
Q psy17178 85 FFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-HFTHLAWVNTPRKEGGLGKLKIPLLSDLT 153 (384)
Q Consensus 85 l~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~-~~~~~~~~~~~~~~~~~~~~~~p~l~D~~ 153 (384)
+.|. .+|||.|..-...|.+ .++.+..+..|. ....+++.+.. ....+|.+.+.+
T Consensus 3 ~l~~-~~~c~~c~~~~~~l~~-------~~i~~~~~~i~~~~~~~~~~~~~~------~~~~vP~i~~~~ 58 (73)
T cd02976 3 TVYT-KPDCPYCKATKRFLDE-------RGIPFEEVDVDEDPEALEELKKLN------GYRSVPVVVIGD 58 (73)
T ss_pred EEEe-CCCChhHHHHHHHHHH-------CCCCeEEEeCCCCHHHHHHHHHHc------CCcccCEEEECC
Confidence 3444 8999999986555544 466666777765 22223333210 024677776643
No 328
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=89.77 E-value=2.7 Score=36.01 Aligned_cols=114 Identities=14% Similarity=0.064 Sum_probs=61.4
Q ss_pred ccccccCCCCCCccEEEeeecCccceEEcccc---CCCeEEEEEeeCCCCCCchHHHHHHHHhHH-------HHHhCC--
Q psy17178 47 TFYSKNLSKPAPFWQGTAVVDGQLKEIKLSDY---YGKYLVFFFYPLDFTFVCPTEILAFNDRLE-------EFHQIN-- 114 (384)
Q Consensus 47 ~~~~~~~G~~aP~f~l~~~~~~~g~~~~l~~~---~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~-------~~~~~~-- 114 (384)
....+.+|..+|+..+.-. .||+++.|.+. .|++-|+.|-...-.+.+...+..|.+..+ .|...+
T Consensus 26 ~a~~l~~G~Rlp~~~v~r~--aD~~p~~l~~~l~sdGrfri~vFagd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~~ 103 (169)
T PF07976_consen 26 LAGGLRPGRRLPSAKVVRH--ADGNPVHLQDDLPSDGRFRILVFAGDISLPEQLSRLSALADYLESPSSFLSRFTPKDRD 103 (169)
T ss_dssp GBTTS-TTCB----EEEET--TTTEEEEGGGG--SSS-EEEEEEEETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS-
T ss_pred cccCcCCccccCCceEEEE--cCCCChhHhhhcccCCCEEEEEEeCCCccchhHHHHHHHHHHHHhcchHHHhcCCCCCC
Confidence 3457789999999998532 38899999976 689999888855555555445555555443 443322
Q ss_pred ----cEEEEEeCCC--HHhHHhhccCccccCCCCcc-ceeEEeeC------cchhHHhhcC
Q psy17178 115 ----TEVVAASVDS--HFTHLAWVNTPRKEGGLGKL-KIPLLSDL------THKISLDYGV 162 (384)
Q Consensus 115 ----v~vi~Vs~d~--~~~~~~~~~~~~~~~~~~~~-~~p~l~D~------~~~~~~~ygv 162 (384)
++++.|...+ .-...++-+.++...+..++ .+.++.|. .+.+.+.|||
T Consensus 104 ~~s~~~~~~I~~~~~~~~e~~dlP~~~~p~~~~~~~~~~~vy~Dd~~~~~~~g~~y~~~Gi 164 (169)
T PF07976_consen 104 PDSVFDVLLIHSSPRDEVELFDLPEIFRPFDGKRGWDYWKVYVDDESYHSGHGDAYEKYGI 164 (169)
T ss_dssp TTSSEEEEEEESS-CCCS-GGGS-CCCS-EETTTTC--SSEEE-S-SSSSTT--HHHHCTB
T ss_pred CCCeeEEEEEecCCCCceeHHHCcHhhCcccCCCCccceeEEecCcccccCcccHHHhhCC
Confidence 7888887654 22233444333221111132 46677775 3778888886
No 329
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=89.72 E-value=1.3 Score=36.72 Aligned_cols=40 Identities=5% Similarity=-0.156 Sum_probs=28.6
Q ss_pred ceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178 335 KIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER 379 (384)
Q Consensus 335 ~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~ 379 (384)
.-.++.|..+.+-.+|++-. -....+++|++|+|.++++.
T Consensus 126 wSq~vlD~~gvak~AWqL~e-----~~SaivVlDk~G~VkfvkeG 165 (184)
T COG3054 126 WSQFVLDSNGVAKNAWQLKE-----ESSAVVVLDKDGRVKFVKEG 165 (184)
T ss_pred ceeeEEccchhhhhhhcccc-----ccceEEEEcCCCcEEEEecC
Confidence 34466788885555898832 23467899999999997763
No 330
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=89.65 E-value=1.1 Score=30.83 Aligned_cols=38 Identities=8% Similarity=-0.046 Sum_probs=25.8
Q ss_pred EEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHH
Q psy17178 275 FFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA 320 (384)
Q Consensus 275 l~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~ 320 (384)
+.|. ..+||.|......| ++.|+.+-.+.++..+..++
T Consensus 2 ~vy~-~~~C~~C~~~~~~L-------~~~~i~y~~~dv~~~~~~~~ 39 (60)
T PF00462_consen 2 VVYT-KPGCPYCKKAKEFL-------DEKGIPYEEVDVDEDEEARE 39 (60)
T ss_dssp EEEE-STTSHHHHHHHHHH-------HHTTBEEEEEEGGGSHHHHH
T ss_pred EEEE-cCCCcCHHHHHHHH-------HHcCCeeeEcccccchhHHH
Confidence 4555 89999998766655 45678888888775433333
No 331
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=89.46 E-value=0.8 Score=37.83 Aligned_cols=136 Identities=13% Similarity=0.023 Sum_probs=72.9
Q ss_pred cccCCCCCCccEEEeee--cCcc-----ceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHH-HHHhCCc-EEEEE
Q psy17178 50 SKNLSKPAPFWQGTAVV--DGQL-----KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLE-EFHQINT-EVVAA 120 (384)
Q Consensus 50 ~~~~G~~aP~f~l~~~~--~~~g-----~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~-~~~~~~v-~vi~V 120 (384)
.++.|++.|..-..+.- .-++ ++...+++.||.-||.-..+- ...-.+..+.+..+.. +|..... .---|
T Consensus 22 nlq~~q~vp~VgV~~~GEl~l~~~~~~y~~W~SAqL~GKvRV~~hiAGR-tsaKE~Na~lieaIk~a~fp~~~YQTTTIi 100 (184)
T COG3054 22 NLQLGQRVPPVGVADRGELVLDKDQFSYKTWNSAQLVGKVRVLQHIAGR-TSAKEKNATLIEAIKSAKFPHDRYQTTTII 100 (184)
T ss_pred hcccCCcCCCccccccceEEecCcceeecccchhhccchhhhhhhhhcc-cchhhhchHHHHHHHhccCChHHceeeEEe
Confidence 56788999987654310 0022 244566778997777666332 2211222233332221 1211112 22346
Q ss_pred eCCCH-HhHHhhccCccccCCCCccce-eEEeeCcchhHH-hhcCcccCCCCcccceeEEEEEEEecCCCcccccceeee
Q psy17178 121 SVDSH-FTHLAWVNTPRKEGGLGKLKI-PLLSDLTHKISL-DYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALY 197 (384)
Q Consensus 121 s~d~~-~~~~~~~~~~~~~~~~~~~~~-p~l~D~~~~~~~-~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~ 197 (384)
+.|++ .-..-|.+.-.+. +...++| .++.|..+ +++ ++++.... .+++++|++|+|..++.|.+.
T Consensus 101 N~DDAi~GtgmFVkssae~-~Kke~pwSq~vlD~~g-vak~AWqL~e~~----------SaivVlDk~G~VkfvkeGaLt 168 (184)
T COG3054 101 NTDDAIPGTGMFVKSSAES-NKKEYPWSQFVLDSNG-VAKNAWQLKEES----------SAVVVLDKDGRVKFVKEGALT 168 (184)
T ss_pred ccCCccccccceeecchhh-ccccCCceeeEEccch-hhhhhhcccccc----------ceEEEEcCCCcEEEEecCCcc
Confidence 77762 2333444432222 1113344 47788888 555 89984332 567899999999999888774
Q ss_pred e
Q psy17178 198 S 198 (384)
Q Consensus 198 p 198 (384)
.
T Consensus 169 ~ 169 (184)
T COG3054 169 Q 169 (184)
T ss_pred H
Confidence 3
No 332
>KOG3425|consensus
Probab=89.30 E-value=0.91 Score=36.07 Aligned_cols=48 Identities=17% Similarity=0.228 Sum_probs=36.5
Q ss_pred ccc-CCCeEEEEEEeC-------CCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy17178 266 SDY-YGKYLVFFFYPL-------DFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 314 (384)
Q Consensus 266 ~d~-~Gk~vvl~F~~a-------~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~ 314 (384)
++. +||.+.+.|..+ +|||.|....|.+.+..+... .++.+|-+.+.+
T Consensus 20 ~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap-~~~~~v~v~VG~ 75 (128)
T KOG3425|consen 20 KNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAP-EDVHFVHVYVGN 75 (128)
T ss_pred HHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCC-CceEEEEEEecC
Confidence 344 677677777633 599999999999999888543 568888888764
No 333
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=89.03 E-value=0.62 Score=38.47 Aligned_cols=32 Identities=16% Similarity=0.080 Sum_probs=27.0
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHH
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 301 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~ 301 (384)
.++++|+.|+ ..+||.|....+.+.++..+++
T Consensus 4 ~a~~~i~~f~-D~~Cp~C~~~~~~l~~~~~~~~ 35 (154)
T cd03023 4 NGDVTIVEFF-DYNCGYCKKLAPELEKLLKEDP 35 (154)
T ss_pred CCCEEEEEEE-CCCChhHHHhhHHHHHHHHHCC
Confidence 4678888887 9999999999999999887664
No 334
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=88.95 E-value=2.1 Score=38.91 Aligned_cols=33 Identities=27% Similarity=0.257 Sum_probs=28.0
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHh
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 302 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~ 302 (384)
.||+.+++.. +.|||.|..+.-.|--....|+.
T Consensus 57 ~Gk~~v~~ig-w~gCP~~A~~sW~L~~ALsrfGn 89 (249)
T PF06053_consen 57 NGKPEVIFIG-WEGCPYCAAESWALYIALSRFGN 89 (249)
T ss_pred CCeeEEEEEe-cccCccchhhHHHHHHHHHhcCC
Confidence 6898777776 99999999999999888888864
No 335
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=88.76 E-value=2.2 Score=37.33 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=22.1
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHH
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFND 295 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~ 295 (384)
.+++.++.|. ...||.|....+.+.+
T Consensus 76 ~~~~~i~~f~-D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 76 NGKRVVYVFT-DPDCPYCRKLEKELKP 101 (197)
T ss_pred CCCEEEEEEE-CCCCccHHHHHHHHhh
Confidence 4788888877 8999999999988877
No 336
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=88.55 E-value=0.54 Score=34.57 Aligned_cols=37 Identities=19% Similarity=0.105 Sum_probs=26.6
Q ss_pred EEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178 84 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124 (384)
Q Consensus 84 vl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~ 124 (384)
|+.|+ ++|||+|....+.|.++. .. ..++++-|+.++
T Consensus 1 V~~f~-~~~Cp~C~~~~~~L~~~~--i~-~~~~~~~v~~~~ 37 (84)
T TIGR02180 1 VVVFS-KSYCPYCKKAKEILAKLN--VK-PAYEVVELDQLS 37 (84)
T ss_pred CEEEE-CCCChhHHHHHHHHHHcC--CC-CCCEEEEeeCCC
Confidence 34566 999999999999888865 21 236777777653
No 337
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=88.38 E-value=1.4 Score=30.96 Aligned_cols=31 Identities=10% Similarity=0.070 Sum_probs=21.1
Q ss_pred EEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy17178 276 FFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 314 (384)
Q Consensus 276 ~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~ 314 (384)
.|. ..|||.|......|.+ .++.+..+.+|.
T Consensus 4 l~~-~~~c~~c~~~~~~l~~-------~~i~~~~~~i~~ 34 (73)
T cd02976 4 VYT-KPDCPYCKATKRFLDE-------RGIPFEEVDVDE 34 (73)
T ss_pred EEe-CCCChhHHHHHHHHHH-------CCCCeEEEeCCC
Confidence 444 8999999875554443 467777777764
No 338
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=88.20 E-value=1.2 Score=37.28 Aligned_cols=49 Identities=12% Similarity=0.034 Sum_probs=36.6
Q ss_pred EEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHH-HhCCcEEEEEeC
Q psy17178 73 IKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEF-HQINTEVVAASV 122 (384)
Q Consensus 73 ~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~-~~~~v~vi~Vs~ 122 (384)
+.+.+-.++++|+.|+ ...||+|.+..+.+.++.+++ .+..+.++.+..
T Consensus 5 ~~~G~~~a~~~v~~f~-d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 5 PTIGNPDAPITVTEFF-DFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp EEES-TTTSEEEEEEE--TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CeecCCCCCeEEEEEE-CCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 4455656678888887 889999999999999999998 334577777765
No 339
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=88.19 E-value=3.6 Score=31.96 Aligned_cols=69 Identities=10% Similarity=0.091 Sum_probs=55.7
Q ss_pred hHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEE
Q psy17178 287 PTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCL 366 (384)
Q Consensus 287 ~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~l 366 (384)
......|++..+++++.+-.=+.|++++.+.+++..+- -...++.-.+...+++.+|+ .++| ++
T Consensus 34 ~~S~~WL~~~~~~L~~l~AvGlVVnV~t~~~l~~Lr~l--------apgl~l~P~sgddLa~rL~l------~hYP--vL 97 (105)
T TIGR03765 34 PASRQWLQQNAAALKSLGAVGLVVNVETAAALQRLRAL--------APGLPLLPVSGDDLAERLGL------RHYP--VL 97 (105)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHH--------cCCCcccCCCHHHHHHHhCC------Cccc--EE
Confidence 36777888999999888877788899998887776553 35667777777899999999 7888 88
Q ss_pred EeCCc
Q psy17178 367 ECYKM 371 (384)
Q Consensus 367 Id~~G 371 (384)
|..+|
T Consensus 98 it~tg 102 (105)
T TIGR03765 98 ITATG 102 (105)
T ss_pred EecCc
Confidence 98887
No 340
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=87.75 E-value=0.89 Score=41.68 Aligned_cols=29 Identities=10% Similarity=0.024 Sum_probs=23.2
Q ss_pred CCCeEEEEEeeCCCCCCchHHHHHHHHhHH
Q psy17178 79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLE 108 (384)
Q Consensus 79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~ 108 (384)
.+|.+|+.|. -..||+|++...++.++.+
T Consensus 116 ~ak~~I~vFt-Dp~CpyC~kl~~~l~~~~~ 144 (251)
T PRK11657 116 DAPRIVYVFA-DPNCPYCKQFWQQARPWVD 144 (251)
T ss_pred CCCeEEEEEE-CCCChhHHHHHHHHHHHhh
Confidence 4577788888 8889999998888777554
No 341
>KOG1731|consensus
Probab=87.70 E-value=0.36 Score=48.38 Aligned_cols=39 Identities=15% Similarity=0.195 Sum_probs=31.5
Q ss_pred eEEEEEEeCCCCcCchHhHHHHHHHHHHHHhC-C-cEEEEEe
Q psy17178 272 YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI-N-TEVVAAS 311 (384)
Q Consensus 272 ~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~-~-v~vv~Is 311 (384)
.-+|-|+ ++||+.|+...|.+.++.++.... + |.|.+|.
T Consensus 59 ~~lVEFy-~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVd 99 (606)
T KOG1731|consen 59 AKLVEFY-NSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVD 99 (606)
T ss_pred hHHHHHH-HhhhhhhhhcchHHHHHHHHHhcccceeEEEEee
Confidence 4578999 999999999999999999998763 3 4455553
No 342
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=87.62 E-value=0.79 Score=37.82 Aligned_cols=31 Identities=16% Similarity=0.098 Sum_probs=25.6
Q ss_pred CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHH
Q psy17178 80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 111 (384)
Q Consensus 80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~ 111 (384)
++++|+.|+ ..+||.|....+.+.++..++.
T Consensus 5 a~~~i~~f~-D~~Cp~C~~~~~~l~~~~~~~~ 35 (154)
T cd03023 5 GDVTIVEFF-DYNCGYCKKLAPELEKLLKEDP 35 (154)
T ss_pred CCEEEEEEE-CCCChhHHHhhHHHHHHHHHCC
Confidence 567777777 9999999999999988776653
No 343
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=87.48 E-value=0.24 Score=50.51 Aligned_cols=71 Identities=44% Similarity=0.816 Sum_probs=58.2
Q ss_pred ccceeEEEEEEEecCCCcccccceeeeeccCCccceeeeeeechhhHHHHHHHHHHHHHHHHhhhccccCC
Q psy17178 171 RGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAWIRHCLLSACLVPVLVCATALVVNFIAMYYHASRAIP 241 (384)
Q Consensus 171 ~g~~~~~~~~vid~~G~v~~~~~g~~~p~~~g~~wk~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (384)
+|...+..+++.---|-+.|+.++.+|....|++|+++.++++.++|++++++.++++.+.+...++.+.|
T Consensus 295 rg~l~t~~i~~y~~~~~iaGy~S~~~yk~~~g~~W~~~~~lt~~~~P~~~~~~~~~~n~i~~~~~ss~aip 365 (521)
T PF02990_consen 295 RGSLLTAAIILYALTSFIAGYVSARLYKSFGGKKWKKNSILTSLLFPGILFSIFFILNFIAWSYGSSSAIP 365 (521)
T ss_pred cchHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCceeehhhHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 45454444444555688999999999999999999999999999999999999999988888887776655
No 344
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=87.44 E-value=1.1 Score=33.44 Aligned_cols=38 Identities=13% Similarity=-0.041 Sum_probs=28.3
Q ss_pred EEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178 84 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124 (384)
Q Consensus 84 vl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~ 124 (384)
|..|. .+|||.|.+-...|+++..++ .++.+.-|+.+.
T Consensus 3 v~iy~-~~~C~~C~~a~~~L~~l~~~~--~~i~~~~idi~~ 40 (85)
T PRK11200 3 VVIFG-RPGCPYCVRAKELAEKLSEER--DDFDYRYVDIHA 40 (85)
T ss_pred EEEEe-CCCChhHHHHHHHHHhhcccc--cCCcEEEEECCC
Confidence 34455 899999999999999988765 466666666653
No 345
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=87.38 E-value=1.4 Score=32.70 Aligned_cols=38 Identities=13% Similarity=-0.041 Sum_probs=29.4
Q ss_pred EEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy17178 274 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 314 (384)
Q Consensus 274 vl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~ 314 (384)
|..|. .+|||.|......|+++..++ .++.+.-|+++.
T Consensus 3 v~iy~-~~~C~~C~~a~~~L~~l~~~~--~~i~~~~idi~~ 40 (85)
T PRK11200 3 VVIFG-RPGCPYCVRAKELAEKLSEER--DDFDYRYVDIHA 40 (85)
T ss_pred EEEEe-CCCChhHHHHHHHHHhhcccc--cCCcEEEEECCC
Confidence 34455 999999999999999998765 467777777753
No 346
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=86.62 E-value=3.6 Score=33.65 Aligned_cols=35 Identities=14% Similarity=0.108 Sum_probs=25.7
Q ss_pred CchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEecCCCCC
Q psy17178 342 LTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFERGNCDW 384 (384)
Q Consensus 342 ~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~~~d~ 384 (384)
.+..++.+||+ ...|+.++. ++|+++.... |..+|
T Consensus 79 ~~~~LA~~fgV------~siPTLl~F-kdGk~v~~i~-G~~~k 113 (132)
T PRK11509 79 QSEAIGDRFGV------FRFPATLVF-TGGNYRGVLN-GIHPW 113 (132)
T ss_pred CCHHHHHHcCC------ccCCEEEEE-ECCEEEEEEe-CcCCH
Confidence 34677889999 788987777 5999998655 55544
No 347
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=86.43 E-value=1.8 Score=36.09 Aligned_cols=49 Identities=12% Similarity=0.017 Sum_probs=36.5
Q ss_pred eeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHH-hCCcEEEEEeC
Q psy17178 263 IKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH-QINTEVVAASV 312 (384)
Q Consensus 263 ~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~-~~~v~vv~Is~ 312 (384)
..+.+-.++++|+.|+ ..-||.|....+.+.++.+++- +..+.++....
T Consensus 5 ~~~G~~~a~~~v~~f~-d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 5 PTIGNPDAPITVTEFF-DFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp EEES-TTTSEEEEEEE--TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CeecCCCCCeEEEEEE-CCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 3455566788888887 8889999999999999999983 34577777754
No 348
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=86.22 E-value=5 Score=33.16 Aligned_cols=70 Identities=14% Similarity=0.136 Sum_probs=56.4
Q ss_pred hHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEE
Q psy17178 287 PTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCL 366 (384)
Q Consensus 287 ~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~l 366 (384)
......|++..+++++.+-.=+.|++++.+.+++..+- -...++.-.....+++.+|+ .|+| +|
T Consensus 72 ~~S~~WL~~~~~~L~~l~AvGlVVNV~t~~~L~~Lr~l--------apgl~l~P~sgddLA~rL~l------~HYP--vL 135 (142)
T PF11072_consen 72 PLSRQWLQQNAEELKQLGAVGLVVNVATEAALQRLRQL--------APGLPLLPVSGDDLARRLGL------SHYP--VL 135 (142)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHH--------cCCCeecCCCHHHHHHHhCC------Cccc--EE
Confidence 36778888999999888877788999999888876654 35677777777899999999 7898 78
Q ss_pred EeCCce
Q psy17178 367 ECYKMV 372 (384)
Q Consensus 367 Id~~G~ 372 (384)
|..+|.
T Consensus 136 It~~gi 141 (142)
T PF11072_consen 136 ITATGI 141 (142)
T ss_pred eecCCc
Confidence 887763
No 349
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=85.23 E-value=1.9 Score=30.05 Aligned_cols=56 Identities=9% Similarity=-0.042 Sum_probs=32.3
Q ss_pred EEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCc
Q psy17178 85 FFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLT 153 (384)
Q Consensus 85 l~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~ 153 (384)
+.|. ..|||.|+.-...|.+. ++.+.-++.+......++.+.. . +...+|.+...+
T Consensus 3 ~ly~-~~~Cp~C~~~~~~L~~~-------~i~~~~~di~~~~~~~~~l~~~---~--~~~~~P~~~~~~ 58 (72)
T cd02066 3 VVFS-KSTCPYCKRAKRLLESL-------GIEFEEIDILEDGELREELKEL---S--GWPTVPQIFING 58 (72)
T ss_pred EEEE-CCCCHHHHHHHHHHHHc-------CCcEEEEECCCCHHHHHHHHHH---h--CCCCcCEEEECC
Confidence 3444 89999999888777664 4556666665433233333211 0 124677776543
No 350
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=83.25 E-value=2.7 Score=29.25 Aligned_cols=39 Identities=8% Similarity=-0.070 Sum_probs=24.8
Q ss_pred EEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHh
Q psy17178 276 FFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWV 322 (384)
Q Consensus 276 ~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~ 322 (384)
.|. ..|||.|......|.+. ++.+.-++++......+.+
T Consensus 4 ly~-~~~Cp~C~~~~~~L~~~-------~i~~~~~di~~~~~~~~~l 42 (72)
T cd02066 4 VFS-KSTCPYCKRAKRLLESL-------GIEFEEIDILEDGELREEL 42 (72)
T ss_pred EEE-CCCCHHHHHHHHHHHHc-------CCcEEEEECCCCHHHHHHH
Confidence 344 89999998877766644 3666667766543334433
No 351
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=82.73 E-value=2.4 Score=31.07 Aligned_cols=56 Identities=9% Similarity=0.039 Sum_probs=33.4
Q ss_pred EEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeC
Q psy17178 83 LVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDL 152 (384)
Q Consensus 83 vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~ 152 (384)
-|..|. .+|||.|.+--..|.+ .|+....+.++.......+.+.. +...+|.+...
T Consensus 9 ~V~ly~-~~~Cp~C~~ak~~L~~-------~gi~y~~idi~~~~~~~~~~~~~------g~~~vP~i~i~ 64 (79)
T TIGR02190 9 SVVVFT-KPGCPFCAKAKATLKE-------KGYDFEEIPLGNDARGRSLRAVT------GATTVPQVFIG 64 (79)
T ss_pred CEEEEE-CCCCHhHHHHHHHHHH-------cCCCcEEEECCCChHHHHHHHHH------CCCCcCeEEEC
Confidence 344555 9999999987766643 46666667666533333443211 13468877653
No 352
>KOG0912|consensus
Probab=81.81 E-value=1.3 Score=41.00 Aligned_cols=32 Identities=19% Similarity=0.286 Sum_probs=28.8
Q ss_pred CeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhC
Q psy17178 81 KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI 113 (384)
Q Consensus 81 k~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~ 113 (384)
..|+|+|+ ++||+..+.-.|-+.+..+++++.
T Consensus 14 elvfv~Fy-AdWCrFSq~L~piF~EAa~~~~~e 45 (375)
T KOG0912|consen 14 ELVFVNFY-ADWCRFSQMLKPIFEEAAAKFKQE 45 (375)
T ss_pred eEEeeeee-hhhchHHHHHhHHHHHHHHHHHHh
Confidence 57899999 999999999999999999888753
No 353
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=81.66 E-value=2.2 Score=29.20 Aligned_cols=53 Identities=9% Similarity=0.006 Sum_probs=32.3
Q ss_pred EEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCH-HhHHhhccCccccCCCCccceeEEee
Q psy17178 85 FFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSH-FTHLAWVNTPRKEGGLGKLKIPLLSD 151 (384)
Q Consensus 85 l~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~-~~~~~~~~~~~~~~~~~~~~~p~l~D 151 (384)
+.|. ..+||.|......| ++.|+..-.+.++.. +..+++.+.. +..++|.+.-
T Consensus 2 ~vy~-~~~C~~C~~~~~~L-------~~~~i~y~~~dv~~~~~~~~~l~~~~------g~~~~P~v~i 55 (60)
T PF00462_consen 2 VVYT-KPGCPYCKKAKEFL-------DEKGIPYEEVDVDEDEEAREELKELS------GVRTVPQVFI 55 (60)
T ss_dssp EEEE-STTSHHHHHHHHHH-------HHTTBEEEEEEGGGSHHHHHHHHHHH------SSSSSSEEEE
T ss_pred EEEE-cCCCcCHHHHHHHH-------HHcCCeeeEcccccchhHHHHHHHHc------CCCccCEEEE
Confidence 4555 89999999877666 346777777777653 3333333321 1457776653
No 354
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=81.51 E-value=10 Score=29.67 Aligned_cols=77 Identities=18% Similarity=0.121 Sum_probs=44.0
Q ss_pred CCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHH
Q psy17178 270 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD 349 (384)
Q Consensus 270 Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 349 (384)
.++++|+= .++.||+-.....++++.++...++ +.++-+.+-.... -...++..
T Consensus 19 ~~~~~iFK-HSt~C~IS~~a~~~~e~~~~~~~~~-~~~y~l~v~~~R~------------------------vSn~IAe~ 72 (105)
T PF11009_consen 19 EKPVLIFK-HSTRCPISAMALREFEKFWEESPDE-IPVYYLDVIEYRP------------------------VSNAIAED 72 (105)
T ss_dssp -SEEEEEE-E-TT-HHHHHHHHHHHHHHHHHT-----EEEEEGGGGHH------------------------HHHHHHHH
T ss_pred cCcEEEEE-eCCCChhhHHHHHHHHHHhhcCCcc-ceEEEEEEEeCch------------------------hHHHHHHH
Confidence 56655544 4888888888888888777766433 6666665432111 12577889
Q ss_pred hCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178 350 YGVYLSDQGHTLDKYCLECYKMVIVYWFE 378 (384)
Q Consensus 350 ~gv~~~~~~~~~p~~~lId~~G~i~~~~~ 378 (384)
|||. .-.|-.+||. ||++++.-.
T Consensus 73 ~~V~-----HeSPQ~ili~-~g~~v~~aS 95 (105)
T PF11009_consen 73 FGVK-----HESPQVILIK-NGKVVWHAS 95 (105)
T ss_dssp HT---------SSEEEEEE-TTEEEEEEE
T ss_pred hCCC-----cCCCcEEEEE-CCEEEEECc
Confidence 9994 2367777775 999998543
No 355
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=80.49 E-value=23 Score=30.18 Aligned_cols=121 Identities=14% Similarity=0.106 Sum_probs=63.9
Q ss_pred CCCCCccEEEeeecCccceEEcccc---CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhC----------------C
Q psy17178 54 SKPAPFWQGTAVVDGQLKEIKLSDY---YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI----------------N 114 (384)
Q Consensus 54 G~~aP~f~l~~~~~~~g~~~~l~~~---~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~----------------~ 114 (384)
|...|++..... .+++++.|.+. .|++-|+.|- +.-- +..+...+.++.+.+... =
T Consensus 1 G~R~~~a~V~r~--aD~~p~~L~~~~~adGrfrI~vFa-gd~~--~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~ 75 (167)
T cd02979 1 GRRFPSAPVVRQ--ADALPVHLGHRLPADGRFRIYVFA-GDIA--PAQQKSRLTQLCDALDSPDSFPLRYTPRGADPDSV 75 (167)
T ss_pred CCcCCCceEEEe--cCCCCHhHhhhccCCCCEEEEEEc-CCCC--chhHHHHHHHHHHHHcCCcchHhhcCCCCCCCCCc
Confidence 566777776543 26778877766 5899888888 4422 234445555555554321 1
Q ss_pred cEEEEEeCCCHHhH--HhhccCccccCCCCccc-eeEEeeCc------chhHHhhcCcccCCCCcccceeEEEEEEEecC
Q psy17178 115 TEVVAASVDSHFTH--LAWVNTPRKEGGLGKLK-IPLLSDLT------HKISLDYGVYLSDQGPVRGSLLSTAIFVYALT 185 (384)
Q Consensus 115 v~vi~Vs~d~~~~~--~~~~~~~~~~~~~~~~~-~p~l~D~~------~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~ 185 (384)
++++.|........ ..+-+.+.......... .-++.|.. +.+.+.||+-.. + .+++++-||
T Consensus 76 ~~~~~I~~~~~~~~e~~dlP~~~~p~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~gv~~~-----~-----g~vvvvRPD 145 (167)
T cd02979 76 FDVVTIHAAPRREIELLDLPAVLRPFGEKKGWDYEKIYADDDSYHEGHGDAYEKYGIDPE-----R-----GAVVVVRPD 145 (167)
T ss_pred EEEEEEecCCccccchhhCcHhhcCCCCccccceeeEEecCccccCCcccHHHhhCCCCC-----C-----CCEEEECCC
Confidence 56667765432111 11111110000000222 23566644 568888887221 1 245699999
Q ss_pred CCcc
Q psy17178 186 SPVN 189 (384)
Q Consensus 186 G~v~ 189 (384)
|-|.
T Consensus 146 gyVg 149 (167)
T cd02979 146 QYVA 149 (167)
T ss_pred CeEE
Confidence 9774
No 356
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=80.39 E-value=2.5 Score=32.62 Aligned_cols=33 Identities=12% Similarity=0.176 Sum_probs=20.2
Q ss_pred EEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178 84 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124 (384)
Q Consensus 84 vl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~ 124 (384)
|+.|- .+|||+|.+.-..|.+ .|+..-.+.+|.
T Consensus 10 Vvvys-k~~Cp~C~~ak~~L~~-------~~i~~~~vdid~ 42 (99)
T TIGR02189 10 VVIFS-RSSCCMCHVVKRLLLT-------LGVNPAVHEIDK 42 (99)
T ss_pred EEEEE-CCCCHHHHHHHHHHHH-------cCCCCEEEEcCC
Confidence 34555 7999999976554443 355444555553
No 357
>PHA03050 glutaredoxin; Provisional
Probab=79.91 E-value=2.7 Score=33.10 Aligned_cols=22 Identities=18% Similarity=0.113 Sum_probs=15.8
Q ss_pred EEEEeeCCCCCCchHHHHHHHHh
Q psy17178 84 VFFFYPLDFTFVCPTEILAFNDR 106 (384)
Q Consensus 84 vl~f~~~~~cp~C~~~~~~l~~~ 106 (384)
|+.|. .+|||+|.+-...|++.
T Consensus 15 V~vys-~~~CPyC~~ak~~L~~~ 36 (108)
T PHA03050 15 VTIFV-KFTCPFCRNALDILNKF 36 (108)
T ss_pred EEEEE-CCCChHHHHHHHHHHHc
Confidence 44555 89999998776666553
No 358
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=79.33 E-value=2.7 Score=30.61 Aligned_cols=33 Identities=9% Similarity=0.124 Sum_probs=23.0
Q ss_pred EeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178 87 FYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124 (384)
Q Consensus 87 f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~ 124 (384)
+|...|||.|...-..|.++.. .++.+=|+.++
T Consensus 4 ~y~~~~Cp~C~~~~~~l~~~~~-----~~~~~~v~~~~ 36 (82)
T cd03419 4 VFSKSYCPYCKRAKSLLKELGV-----KPAVVELDQHE 36 (82)
T ss_pred EEEcCCCHHHHHHHHHHHHcCC-----CcEEEEEeCCC
Confidence 3448999999998888877543 34556666554
No 359
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=78.46 E-value=4.2 Score=29.55 Aligned_cols=32 Identities=9% Similarity=0.127 Sum_probs=22.5
Q ss_pred EeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy17178 278 YPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 314 (384)
Q Consensus 278 ~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~ 314 (384)
|.+.|||.|...-..|.++.. .+.++=|+.++
T Consensus 5 y~~~~Cp~C~~~~~~l~~~~~-----~~~~~~v~~~~ 36 (82)
T cd03419 5 FSKSYCPYCKRAKSLLKELGV-----KPAVVELDQHE 36 (82)
T ss_pred EEcCCCHHHHHHHHHHHHcCC-----CcEEEEEeCCC
Confidence 339999999988887777654 34566666553
No 360
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=78.29 E-value=5.7 Score=28.34 Aligned_cols=37 Identities=11% Similarity=0.185 Sum_probs=24.2
Q ss_pred EEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHH
Q psy17178 277 FYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA 320 (384)
Q Consensus 277 F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~ 320 (384)
+|...+||.|......|++ .|+.+-.+.++......+
T Consensus 3 ly~~~~Cp~C~~ak~~L~~-------~~i~~~~~di~~~~~~~~ 39 (72)
T TIGR02194 3 VYSKNNCVQCKMTKKALEE-------HGIAFEEINIDEQPEAID 39 (72)
T ss_pred EEeCCCCHHHHHHHHHHHH-------CCCceEEEECCCCHHHHH
Confidence 3448899999887776653 567777777764333333
No 361
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=77.91 E-value=5.9 Score=28.91 Aligned_cols=34 Identities=9% Similarity=0.103 Sum_probs=23.2
Q ss_pred EEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCH
Q psy17178 274 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSH 315 (384)
Q Consensus 274 vl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~ 315 (384)
|..|. .+|||.|...-..|. +.|+.+-.+.++..
T Consensus 10 V~ly~-~~~Cp~C~~ak~~L~-------~~gi~y~~idi~~~ 43 (79)
T TIGR02190 10 VVVFT-KPGCPFCAKAKATLK-------EKGYDFEEIPLGND 43 (79)
T ss_pred EEEEE-CCCCHhHHHHHHHHH-------HcCCCcEEEECCCC
Confidence 33444 999999988776664 34676666777643
No 362
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=77.65 E-value=3.6 Score=29.42 Aligned_cols=53 Identities=13% Similarity=0.263 Sum_probs=31.1
Q ss_pred EeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeC
Q psy17178 87 FYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDL 152 (384)
Q Consensus 87 f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~ 152 (384)
+|...+||.|+.....|.+ .|+.+-.+..+......+..+.. +...+|++...
T Consensus 3 ly~~~~Cp~C~~ak~~L~~-------~~i~~~~~di~~~~~~~~~~~~~------g~~~vP~v~~~ 55 (72)
T TIGR02194 3 VYSKNNCVQCKMTKKALEE-------HGIAFEEINIDEQPEAIDYVKAQ------GFRQVPVIVAD 55 (72)
T ss_pred EEeCCCCHHHHHHHHHHHH-------CCCceEEEECCCCHHHHHHHHHc------CCcccCEEEEC
Confidence 4448899999988777754 56666666665422223332221 12367777653
No 363
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=77.17 E-value=3 Score=33.29 Aligned_cols=45 Identities=13% Similarity=0.114 Sum_probs=30.9
Q ss_pred ccCCCeEEEEEeeCC----CCCCchHHH--HHHHHhHHHHHhCCcEEEEEeCCCHH
Q psy17178 77 DYYGKYLVFFFYPLD----FTFVCPTEI--LAFNDRLEEFHQINTEVVAASVDSHF 126 (384)
Q Consensus 77 ~~~gk~vvl~f~~~~----~cp~C~~~~--~~l~~~~~~~~~~~v~vi~Vs~d~~~ 126 (384)
.-.+|+++|+++ +. ||..|+..+ |++.+..+ .++.+.+.+++.++
T Consensus 14 k~e~K~llVylh-s~~~~~~~~fc~~~l~~~~v~~~ln----~~fv~w~~dv~~~e 64 (116)
T cd02991 14 KQELRFLLVYLH-GDDHQDTDEFCRNTLCAPEVIEYIN----TRMLFWACSVAKPE 64 (116)
T ss_pred HhhCCEEEEEEe-CCCCccHHHHHHHHcCCHHHHHHHH----cCEEEEEEecCChH
Confidence 335799999999 66 788887654 55555553 35767777776655
No 364
>PRK10329 glutaredoxin-like protein; Provisional
Probab=76.28 E-value=7.6 Score=28.69 Aligned_cols=53 Identities=13% Similarity=0.115 Sum_probs=31.1
Q ss_pred EeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC-HHhHHhhccCccccCCCCccceeEEeeCc
Q psy17178 87 FYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-HFTHLAWVNTPRKEGGLGKLKIPLLSDLT 153 (384)
Q Consensus 87 f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~-~~~~~~~~~~~~~~~~~~~~~~p~l~D~~ 153 (384)
.|-..|||.|......|. ++|+.+--|.++. ++..+.+... +...+|++...+
T Consensus 5 lYt~~~Cp~C~~ak~~L~-------~~gI~~~~idi~~~~~~~~~~~~~-------g~~~vPvv~i~~ 58 (81)
T PRK10329 5 IYTRNDCVQCHATKRAME-------SRGFDFEMINVDRVPEAAETLRAQ-------GFRQLPVVIAGD 58 (81)
T ss_pred EEeCCCCHhHHHHHHHHH-------HCCCceEEEECCCCHHHHHHHHHc-------CCCCcCEEEECC
Confidence 444899999998665553 3677777777764 3233323221 123677776543
No 365
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=75.31 E-value=6.8 Score=29.20 Aligned_cols=35 Identities=9% Similarity=-0.084 Sum_probs=23.6
Q ss_pred EEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC
Q psy17178 277 FYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD 313 (384)
Q Consensus 277 F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d 313 (384)
.+..+|||.|......|.++..++ .++.+.-++++
T Consensus 4 vys~~~Cp~C~~ak~~L~~~~~~~--~~i~~~~idi~ 38 (86)
T TIGR02183 4 IFGRPGCPYCVRAKQLAEKLAIER--ADFEFRYIDIH 38 (86)
T ss_pred EEeCCCCccHHHHHHHHHHhCccc--CCCcEEEEECC
Confidence 334899999998888777765433 24555556654
No 366
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=75.20 E-value=5.2 Score=33.96 Aligned_cols=38 Identities=13% Similarity=0.029 Sum_probs=30.6
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEE
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVV 308 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv 308 (384)
.++++|+.|+ ...||.|....+.+.++.+++. .++.+.
T Consensus 14 ~~~~~i~~f~-D~~Cp~C~~~~~~~~~~~~~~~-~~v~~~ 51 (178)
T cd03019 14 SGKPEVIEFF-SYGCPHCYNFEPILEAWVKKLP-KDVKFE 51 (178)
T ss_pred CCCcEEEEEE-CCCCcchhhhhHHHHHHHHhCC-CCceEE
Confidence 5788888888 8889999999999999988873 345443
No 367
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=75.18 E-value=7.3 Score=28.72 Aligned_cols=54 Identities=13% Similarity=0.084 Sum_probs=31.9
Q ss_pred eeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeC--CCHHhHHhhccCccccCCCCccceeEEeeCc
Q psy17178 88 YPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV--DSHFTHLAWVNTPRKEGGLGKLKIPLLSDLT 153 (384)
Q Consensus 88 ~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~--d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~ 153 (384)
|...+||+|.+.-..|. ++|+...-|.. ++.+..+++++... +..++|.+...+
T Consensus 6 yt~~~CPyC~~ak~~L~-------~~g~~~~~i~~~~~~~~~~~~~~~~~~-----g~~tvP~I~i~~ 61 (80)
T COG0695 6 YTKPGCPYCKRAKRLLD-------RKGVDYEEIDVDDDEPEEAREMVKRGK-----GQRTVPQIFIGG 61 (80)
T ss_pred EECCCCchHHHHHHHHH-------HcCCCcEEEEecCCcHHHHHHHHHHhC-----CCCCcCEEEECC
Confidence 33677999998766555 45665554444 44445556665421 135788776554
No 368
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=74.80 E-value=4.9 Score=36.35 Aligned_cols=37 Identities=14% Similarity=-0.045 Sum_probs=27.6
Q ss_pred CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEE
Q psy17178 79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAA 120 (384)
Q Consensus 79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~V 120 (384)
.||.+|+.|. -..||+|++-.+++.++. +.|+++..+
T Consensus 106 ~~k~~I~vFt-Dp~CpyCkkl~~~l~~~~----~~~v~v~~~ 142 (232)
T PRK10877 106 QEKHVITVFT-DITCGYCHKLHEQMKDYN----ALGITVRYL 142 (232)
T ss_pred CCCEEEEEEE-CCCChHHHHHHHHHHHHh----cCCeEEEEE
Confidence 4677888888 889999999888877653 356766554
No 369
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=74.41 E-value=7 Score=27.83 Aligned_cols=54 Identities=13% Similarity=0.103 Sum_probs=31.2
Q ss_pred EeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC-HHhHHhhccCccccCCCCccceeEEeeC
Q psy17178 87 FYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-HFTHLAWVNTPRKEGGLGKLKIPLLSDL 152 (384)
Q Consensus 87 f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~-~~~~~~~~~~~~~~~~~~~~~~p~l~D~ 152 (384)
+|..++||.|......|++ .|+.+-.+.++. ++..+++.+.. +. ...+|.+.-.
T Consensus 4 ly~~~~Cp~C~~ak~~L~~-------~~i~~~~i~i~~~~~~~~~~~~~~----~~-~~~vP~v~i~ 58 (75)
T cd03418 4 IYTKPNCPYCVRAKALLDK-------KGVDYEEIDVDGDPALREEMINRS----GG-RRTVPQIFIG 58 (75)
T ss_pred EEeCCCChHHHHHHHHHHH-------CCCcEEEEECCCCHHHHHHHHHHh----CC-CCccCEEEEC
Confidence 3448999999987666654 466666666654 34444444321 10 1267876543
No 370
>KOG1731|consensus
Probab=74.23 E-value=1.1 Score=45.12 Aligned_cols=42 Identities=14% Similarity=0.183 Sum_probs=32.4
Q ss_pred eEEEEEeeCCCCCCchHHHHHHHHhHHHHHhC-Cc-EEEEEeCCC
Q psy17178 82 YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI-NT-EVVAASVDS 124 (384)
Q Consensus 82 ~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~v-~vi~Vs~d~ 124 (384)
.-+|.|+ ++||+.|+.-.|.++++.+.++.- ++ .|.+|.--.
T Consensus 59 ~~lVEFy-~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~ 102 (606)
T KOG1731|consen 59 AKLVEFY-NSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCAD 102 (606)
T ss_pred hHHHHHH-HhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccc
Confidence 4588999 999999999999999999988763 33 444555433
No 371
>PRK10329 glutaredoxin-like protein; Provisional
Probab=74.18 E-value=11 Score=27.86 Aligned_cols=32 Identities=16% Similarity=0.116 Sum_probs=22.6
Q ss_pred EeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHH
Q psy17178 278 YPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHF 316 (384)
Q Consensus 278 ~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~ 316 (384)
|...+||.|......| .+.|+.+--+.++...
T Consensus 6 Yt~~~Cp~C~~ak~~L-------~~~gI~~~~idi~~~~ 37 (81)
T PRK10329 6 YTRNDCVQCHATKRAM-------ESRGFDFEMINVDRVP 37 (81)
T ss_pred EeCCCCHhHHHHHHHH-------HHCCCceEEEECCCCH
Confidence 3389999998766655 3467888788877433
No 372
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=73.76 E-value=6.2 Score=33.43 Aligned_cols=37 Identities=14% Similarity=0.046 Sum_probs=29.2
Q ss_pred CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEE
Q psy17178 79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEV 117 (384)
Q Consensus 79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~v 117 (384)
.++++|+.|+ ...||+|..--+.+.++.+++. .++.+
T Consensus 14 ~~~~~i~~f~-D~~Cp~C~~~~~~~~~~~~~~~-~~v~~ 50 (178)
T cd03019 14 SGKPEVIEFF-SYGCPHCYNFEPILEAWVKKLP-KDVKF 50 (178)
T ss_pred CCCcEEEEEE-CCCCcchhhhhHHHHHHHHhCC-CCceE
Confidence 5678888888 8889999999999998888773 34444
No 373
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=73.70 E-value=9.3 Score=28.15 Aligned_cols=53 Identities=11% Similarity=0.036 Sum_probs=31.8
Q ss_pred eCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC--CHHhHHHHhcCccccCCCCCcceeEEecCc
Q psy17178 279 PLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD--SHFTHLAWVNTPRKEGGLGKLKIPLLSDLT 343 (384)
Q Consensus 279 ~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 343 (384)
..++||.|...-..|. ++|+.+.-|.++ ..+..+++++... +.-++|++...+
T Consensus 7 t~~~CPyC~~ak~~L~-------~~g~~~~~i~~~~~~~~~~~~~~~~~~-----g~~tvP~I~i~~ 61 (80)
T COG0695 7 TKPGCPYCKRAKRLLD-------RKGVDYEEIDVDDDEPEEAREMVKRGK-----GQRTVPQIFIGG 61 (80)
T ss_pred ECCCCchHHHHHHHHH-------HcCCCcEEEEecCCcHHHHHHHHHHhC-----CCCCcCEEEECC
Confidence 3677999987665555 466666555554 4336666666542 135677665444
No 374
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=73.50 E-value=7.4 Score=33.99 Aligned_cols=32 Identities=19% Similarity=0.126 Sum_probs=24.4
Q ss_pred EEccccCCCeEEEEEeeCCCCCCchHHHHHHHH
Q psy17178 73 IKLSDYYGKYLVFFFYPLDFTFVCPTEILAFND 105 (384)
Q Consensus 73 ~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~ 105 (384)
+.+..-.+++.++.|. ...||+|++..+.+.+
T Consensus 70 i~~g~~~~~~~i~~f~-D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 70 IVYGKGNGKRVVYVFT-DPDCPYCRKLEKELKP 101 (197)
T ss_pred eEEcCCCCCEEEEEEE-CCCCccHHHHHHHHhh
Confidence 3433334678888888 8999999999988876
No 375
>KOG0911|consensus
Probab=73.22 E-value=3.6 Score=36.53 Aligned_cols=43 Identities=23% Similarity=0.328 Sum_probs=34.8
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 314 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~ 314 (384)
+++..+++|| +.||.+|......+..+.+.+ .+++++-+..+.
T Consensus 16 ~~~~~~~~f~-a~wa~~~~q~~~v~~~~~~~~--~~~~~~k~~a~~ 58 (227)
T KOG0911|consen 16 KGKLLVLHFW-AIWAVVQKQMDQVFDHLAEYF--KNAQFLKLEAEE 58 (227)
T ss_pred ccchhhhhhh-hhhhhhhhhHHHHHHHHHHhh--hhheeeeehhhh
Confidence 7889999999 999999988888788777776 566777666654
No 376
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=73.16 E-value=14 Score=38.01 Aligned_cols=29 Identities=17% Similarity=0.018 Sum_probs=20.7
Q ss_pred CeEEEEEEeCCCCcCchHhHHHHHHHHHH
Q psy17178 271 KYLVFFFYPLDFTFVCPTEILAFNDRLEE 299 (384)
Q Consensus 271 k~vvl~F~~a~~c~~C~~~~~~l~~l~~~ 299 (384)
|++-|-+|.+.+||.|+.....++++..+
T Consensus 476 ~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~ 504 (555)
T TIGR03143 476 KPVNIKIGVSLSCTLCPDVVLAAQRIASL 504 (555)
T ss_pred CCeEEEEEECCCCCCcHHHHHHHHHHHHh
Confidence 44545554499999999877777776654
No 377
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=72.45 E-value=8.2 Score=28.45 Aligned_cols=34 Identities=15% Similarity=-0.018 Sum_probs=24.1
Q ss_pred EEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEe
Q psy17178 276 FFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAAS 311 (384)
Q Consensus 276 ~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is 311 (384)
.|+ ...||.|....+.+.++.+.. ..++.+.-..
T Consensus 3 ~f~-d~~Cp~C~~~~~~l~~~~~~~-~~~~~~~~~~ 36 (98)
T cd02972 3 EFF-DPLCPYCYLFEPELEKLLYAD-DGGVRVVYRP 36 (98)
T ss_pred EEE-CCCCHhHHhhhHHHHHHHhhc-CCcEEEEEec
Confidence 444 889999999999999987433 3445555443
No 378
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=72.13 E-value=8.9 Score=27.23 Aligned_cols=31 Identities=6% Similarity=0.076 Sum_probs=20.7
Q ss_pred EeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178 87 FYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124 (384)
Q Consensus 87 f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~ 124 (384)
.|..++||.|.+-...|.+ .|+...-+.++.
T Consensus 5 lys~~~Cp~C~~ak~~L~~-------~~i~~~~~~v~~ 35 (72)
T cd03029 5 LFTKPGCPFCARAKAALQE-------NGISYEEIPLGK 35 (72)
T ss_pred EEECCCCHHHHHHHHHHHH-------cCCCcEEEECCC
Confidence 3448999999988665553 466655666554
No 379
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=72.07 E-value=6.4 Score=29.36 Aligned_cols=36 Identities=8% Similarity=-0.081 Sum_probs=23.3
Q ss_pred EEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178 86 FFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD 123 (384)
Q Consensus 86 ~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d 123 (384)
..|..+|||.|.+-...|.++..++ .++.+.-+..+
T Consensus 3 ~vys~~~Cp~C~~ak~~L~~~~~~~--~~i~~~~idi~ 38 (86)
T TIGR02183 3 VIFGRPGCPYCVRAKQLAEKLAIER--ADFEFRYIDIH 38 (86)
T ss_pred EEEeCCCCccHHHHHHHHHHhCccc--CCCcEEEEECC
Confidence 3445899999998887777754332 24555555554
No 380
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=72.07 E-value=12 Score=28.73 Aligned_cols=61 Identities=8% Similarity=-0.042 Sum_probs=32.3
Q ss_pred CCeEEEEEee---CCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeC
Q psy17178 80 GKYLVFFFYP---LDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDL 152 (384)
Q Consensus 80 gk~vvl~f~~---~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~ 152 (384)
.++|+|+--. .+|||+|.+--..|.+ .|+....+.++.....++..... .+ .-++|.+.-.
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~-------~~i~~~~~di~~~~~~~~~l~~~---tg--~~tvP~vfi~ 74 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKA-------CGVPFAYVNVLEDPEIRQGIKEY---SN--WPTIPQLYVK 74 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHH-------cCCCEEEEECCCCHHHHHHHHHH---hC--CCCCCEEEEC
Confidence 3556666542 2799999976665554 45555556654322233333221 11 2367766543
No 381
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=71.91 E-value=12 Score=26.58 Aligned_cols=39 Identities=8% Similarity=0.037 Sum_probs=24.3
Q ss_pred EEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCC-HHhHHHHh
Q psy17178 276 FFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-HFTHLAWV 322 (384)
Q Consensus 276 ~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~-~~~~~~~~ 322 (384)
.|. .++||.|......|++ .++.+--+.++. ++..+++.
T Consensus 4 ly~-~~~Cp~C~~ak~~L~~-------~~i~~~~i~i~~~~~~~~~~~ 43 (75)
T cd03418 4 IYT-KPNCPYCVRAKALLDK-------KGVDYEEIDVDGDPALREEMI 43 (75)
T ss_pred EEe-CCCChHHHHHHHHHHH-------CCCcEEEEECCCCHHHHHHHH
Confidence 344 8999999876666643 466666677654 33334443
No 382
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=71.42 E-value=4.9 Score=34.10 Aligned_cols=29 Identities=7% Similarity=0.072 Sum_probs=18.2
Q ss_pred ceEEccccCCCeEEEEEeeCCCCCCchHHH
Q psy17178 71 KEIKLSDYYGKYLVFFFYPLDFTFVCPTEI 100 (384)
Q Consensus 71 ~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~ 100 (384)
+.+..+.-.+|+++|.+. .+||..|....
T Consensus 28 ea~~~Ak~e~KpIfl~ig-~~~C~wChvM~ 56 (163)
T PF03190_consen 28 EALEKAKKENKPIFLSIG-YSWCHWCHVME 56 (163)
T ss_dssp HHHHHHHHHT--EEEEEE--TT-HHHHHHH
T ss_pred HHHHHHHhcCCcEEEEEE-ecCCcchhhhc
Confidence 344555557899999999 99999998543
No 383
>KOG4277|consensus
Probab=71.17 E-value=4.7 Score=37.33 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=25.2
Q ss_pred eEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCc
Q psy17178 272 YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINT 305 (384)
Q Consensus 272 ~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v 305 (384)
.-+|.|| +.||..|++-.|--.++--++++.|.
T Consensus 45 iW~VdFY-APWC~HCKkLePiWdeVG~elkdig~ 77 (468)
T KOG4277|consen 45 IWFVDFY-APWCAHCKKLEPIWDEVGHELKDIGL 77 (468)
T ss_pred eEEEEee-chhhhhcccccchhHHhCcchhhcCC
Confidence 4578998 99999999988877776666655543
No 384
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=70.85 E-value=23 Score=27.55 Aligned_cols=58 Identities=10% Similarity=0.137 Sum_probs=45.5
Q ss_pred hHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchhHHhhcC
Q psy17178 97 PTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGV 162 (384)
Q Consensus 97 ~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv 162 (384)
.....-|++..+++++.+..-+.|++++.+..++..+- --..++.-....++++.+|+
T Consensus 34 ~~S~~WL~~~~~~L~~l~AvGlVVnV~t~~~l~~Lr~l--------apgl~l~P~sgddLa~rL~l 91 (105)
T TIGR03765 34 PASRQWLQQNAAALKSLGAVGLVVNVETAAALQRLRAL--------APGLPLLPVSGDDLAERLGL 91 (105)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHH--------cCCCcccCCCHHHHHHHhCC
Confidence 35667788888999988888899999998887776652 23566777777789999998
No 385
>PHA03050 glutaredoxin; Provisional
Probab=70.81 E-value=7.3 Score=30.62 Aligned_cols=21 Identities=14% Similarity=0.064 Sum_probs=14.7
Q ss_pred EEEEeCCCCcCchHhHHHHHHH
Q psy17178 275 FFFYPLDFTFVCPTEILAFNDR 296 (384)
Q Consensus 275 l~F~~a~~c~~C~~~~~~l~~l 296 (384)
+.|. .+|||.|......|.++
T Consensus 16 ~vys-~~~CPyC~~ak~~L~~~ 36 (108)
T PHA03050 16 TIFV-KFTCPFCRNALDILNKF 36 (108)
T ss_pred EEEE-CCCChHHHHHHHHHHHc
Confidence 3444 89999998776665544
No 386
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=70.15 E-value=12 Score=26.70 Aligned_cols=52 Identities=13% Similarity=0.040 Sum_probs=30.4
Q ss_pred eeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC-HHhHHhhccCccccCCCCccceeEEeeC
Q psy17178 88 YPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-HFTHLAWVNTPRKEGGLGKLKIPLLSDL 152 (384)
Q Consensus 88 ~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~-~~~~~~~~~~~~~~~~~~~~~~p~l~D~ 152 (384)
|...+||.|.+-...|.+ .|+.+-.+.++. ++...++.+.. +...+|.+.-.
T Consensus 6 y~~~~C~~C~ka~~~L~~-------~gi~~~~~di~~~~~~~~el~~~~------g~~~vP~v~i~ 58 (73)
T cd03027 6 YSRLGCEDCTAVRLFLRE-------KGLPYVEINIDIFPERKAELEERT------GSSVVPQIFFN 58 (73)
T ss_pred EecCCChhHHHHHHHHHH-------CCCceEEEECCCCHHHHHHHHHHh------CCCCcCEEEEC
Confidence 337899999987766664 566666666654 33333443321 12467776543
No 387
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=69.36 E-value=15 Score=28.10 Aligned_cols=47 Identities=4% Similarity=-0.048 Sum_probs=25.6
Q ss_pred CCeEEEEEEe---CCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhc
Q psy17178 270 GKYLVFFFYP---LDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVN 323 (384)
Q Consensus 270 Gk~vvl~F~~---a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~ 323 (384)
.+.++|+-.. .+|||.|...-..|.+ .|+.+..+.++.....++.+.
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~-------~~i~~~~~di~~~~~~~~~l~ 60 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKA-------CGVPFAYVNVLEDPEIRQGIK 60 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHH-------cCCCEEEEECCCCHHHHHHHH
Confidence 3445555431 2789999766554443 456666677653333444333
No 388
>PRK10638 glutaredoxin 3; Provisional
Probab=69.07 E-value=12 Score=27.47 Aligned_cols=52 Identities=12% Similarity=0.191 Sum_probs=30.1
Q ss_pred EeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCH-HhHHhhccCccccCCCCccceeEEee
Q psy17178 87 FYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSH-FTHLAWVNTPRKEGGLGKLKIPLLSD 151 (384)
Q Consensus 87 f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~-~~~~~~~~~~~~~~~~~~~~~p~l~D 151 (384)
+|...+||.|..-...|.+ +|+..--+.++.. +..+++.+.. + ...+|.+..
T Consensus 6 ly~~~~Cp~C~~a~~~L~~-------~gi~y~~~dv~~~~~~~~~l~~~~----g--~~~vP~i~~ 58 (83)
T PRK10638 6 IYTKATCPFCHRAKALLNS-------KGVSFQEIPIDGDAAKREEMIKRS----G--RTTVPQIFI 58 (83)
T ss_pred EEECCCChhHHHHHHHHHH-------cCCCcEEEECCCCHHHHHHHHHHh----C--CCCcCEEEE
Confidence 4548899999987766665 4555555666543 2333443321 1 236787744
No 389
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=69.01 E-value=58 Score=27.68 Aligned_cols=123 Identities=9% Similarity=0.031 Sum_probs=71.0
Q ss_pred CCCCCCceeeeEEcCcceeeecccc---CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhC----------------C
Q psy17178 244 SKPAPFWQGTAVVDGQLKEIKLSDY---YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI----------------N 304 (384)
Q Consensus 244 g~~~P~f~l~~l~d~~g~~~~l~d~---~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~----------------~ 304 (384)
|..+|++..... .+++++.|.+. .|++-|+.|- +.- .+......|+++.+.+... -
T Consensus 1 G~R~~~a~V~r~--aD~~p~~L~~~~~adGrfrI~vFa-gd~--~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~ 75 (167)
T cd02979 1 GRRFPSAPVVRQ--ADALPVHLGHRLPADGRFRIYVFA-GDI--APAQQKSRLTQLCDALDSPDSFPLRYTPRGADPDSV 75 (167)
T ss_pred CCcCCCceEEEe--cCCCCHhHhhhccCCCCEEEEEEc-CCC--CchhHHHHHHHHHHHHcCCcchHhhcCCCCCCCCCc
Confidence 456777777654 37888888774 6899888875 332 2345556666666665321 1
Q ss_pred cEEEEEeCCCH-----HhHHHHhcCccccCCCCCcc-eeEEecCc------hHHHHHhCceecCCCceeeEEEEEeCCce
Q psy17178 305 TEVVAASVDSH-----FTHLAWVNTPRKEGGLGKLK-IPLLSDLT------HKISLDYGVYLSDQGHTLDKYCLECYKMV 372 (384)
Q Consensus 305 v~vv~Is~d~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~D~~------~~~~~~~gv~~~~~~~~~p~~~lId~~G~ 372 (384)
+.++.|..... ..+.+......... +.. ..++.|.+ +...+.||+.. .....+++-|||-
T Consensus 76 ~~~~~I~~~~~~~~e~~dlP~~~~p~~~~~---~~~~~~v~~d~~~~~~~~~~~~~~~gv~~-----~~g~vvvvRPDgy 147 (167)
T cd02979 76 FDVVTIHAAPRREIELLDLPAVLRPFGEKK---GWDYEKIYADDDSYHEGHGDAYEKYGIDP-----ERGAVVVVRPDQY 147 (167)
T ss_pred EEEEEEecCCccccchhhCcHhhcCCCCcc---ccceeeEEecCccccCCcccHHHhhCCCC-----CCCCEEEECCCCe
Confidence 56667654321 12333333221111 222 33555644 56888899731 2346789999998
Q ss_pred EEEEEec
Q psy17178 373 IVYWFER 379 (384)
Q Consensus 373 i~~~~~~ 379 (384)
|-.+-..
T Consensus 148 Vg~~~~~ 154 (167)
T cd02979 148 VALVGPL 154 (167)
T ss_pred EEEEecc
Confidence 8775543
No 390
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=67.48 E-value=13 Score=27.89 Aligned_cols=26 Identities=12% Similarity=-0.005 Sum_probs=17.0
Q ss_pred CCCeEEEEEeeC----CCCCCchHHHHHHHH
Q psy17178 79 YGKYLVFFFYPL----DFTFVCPTEILAFND 105 (384)
Q Consensus 79 ~gk~vvl~f~~~----~~cp~C~~~~~~l~~ 105 (384)
+.++|+|+-- + .|||+|......|.+
T Consensus 6 ~~~~vvvf~k-~~~~~~~Cp~C~~ak~~L~~ 35 (90)
T cd03028 6 KENPVVLFMK-GTPEEPRCGFSRKVVQILNQ 35 (90)
T ss_pred ccCCEEEEEc-CCCCCCCCcHHHHHHHHHHH
Confidence 4566666543 3 589999876665555
No 391
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=67.36 E-value=11 Score=27.22 Aligned_cols=53 Identities=11% Similarity=0.149 Sum_probs=29.7
Q ss_pred EeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC-HHhHHhhccCccccCCCCccceeEEeeC
Q psy17178 87 FYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-HFTHLAWVNTPRKEGGLGKLKIPLLSDL 152 (384)
Q Consensus 87 f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~-~~~~~~~~~~~~~~~~~~~~~~p~l~D~ 152 (384)
+|...+||.|..-...|++ .|+.+--+.++. ++..+++.+.. +...+|.+.-.
T Consensus 3 ly~~~~Cp~C~~a~~~L~~-------~~i~~~~~di~~~~~~~~~~~~~~------g~~~vP~i~i~ 56 (79)
T TIGR02181 3 IYTKPYCPYCTRAKALLSS-------KGVTFTEIRVDGDPALRDEMMQRS------GRRTVPQIFIG 56 (79)
T ss_pred EEecCCChhHHHHHHHHHH-------cCCCcEEEEecCCHHHHHHHHHHh------CCCCcCEEEEC
Confidence 3448999999987777764 345444444443 33334443321 13467766543
No 392
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=67.21 E-value=13 Score=26.79 Aligned_cols=30 Identities=10% Similarity=0.188 Sum_probs=19.8
Q ss_pred EEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC
Q psy17178 276 FFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD 313 (384)
Q Consensus 276 ~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d 313 (384)
.|+ ..+||.|......|++ .|+.+--++++
T Consensus 3 ly~-~~~Cp~C~~a~~~L~~-------~~i~~~~~di~ 32 (79)
T TIGR02181 3 IYT-KPYCPYCTRAKALLSS-------KGVTFTEIRVD 32 (79)
T ss_pred EEe-cCCChhHHHHHHHHHH-------cCCCcEEEEec
Confidence 344 8999999887776654 34555555554
No 393
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=66.99 E-value=15 Score=26.03 Aligned_cols=29 Identities=7% Similarity=-0.011 Sum_probs=20.0
Q ss_pred eCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy17178 279 PLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 314 (384)
Q Consensus 279 ~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~ 314 (384)
..++||.|......|+ +.++.+.-+.++.
T Consensus 7 s~~~Cp~C~~ak~~L~-------~~~i~~~~~~v~~ 35 (72)
T cd03029 7 TKPGCPFCARAKAALQ-------ENGISYEEIPLGK 35 (72)
T ss_pred ECCCCHHHHHHHHHHH-------HcCCCcEEEECCC
Confidence 3899999988765554 3466666666654
No 394
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=66.63 E-value=30 Score=28.63 Aligned_cols=59 Identities=15% Similarity=0.167 Sum_probs=46.6
Q ss_pred hHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchhHHhhcCc
Q psy17178 97 PTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVY 163 (384)
Q Consensus 97 ~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~ 163 (384)
......|++..+++++.+..=+.|++++.+.+++..+- .-..+++-....++++.+|+.
T Consensus 72 ~~S~~WL~~~~~~L~~l~AvGlVVNV~t~~~L~~Lr~l--------apgl~l~P~sgddLA~rL~l~ 130 (142)
T PF11072_consen 72 PLSRQWLQQNAEELKQLGAVGLVVNVATEAALQRLRQL--------APGLPLLPVSGDDLARRLGLS 130 (142)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHH--------cCCCeecCCCHHHHHHHhCCC
Confidence 35677788888999998988899999998888877653 235667766677899999983
No 395
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=66.53 E-value=34 Score=35.95 Aligned_cols=129 Identities=15% Similarity=0.011 Sum_probs=66.8
Q ss_pred ccccCCCCCCccEEEeeecCccceEEcccc---CCCeEEEEEeeCCCCCCchHHHHHHHHhHH--------HHHhCC---
Q psy17178 49 YSKNLSKPAPFWQGTAVVDGQLKEIKLSDY---YGKYLVFFFYPLDFTFVCPTEILAFNDRLE--------EFHQIN--- 114 (384)
Q Consensus 49 ~~~~~G~~aP~f~l~~~~~~~g~~~~l~~~---~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~--------~~~~~~--- 114 (384)
..+.+|..+|++.+... .+++++.|.+. .|++.++.|-...-.+.....+..+.+..+ .|...+
T Consensus 461 ~~~~~G~r~~~~~v~~~--~d~~~~~l~~~~~~~g~~~l~~f~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 538 (634)
T PRK08294 461 TGFPIGKRFHSAPVIRL--ADAKPVHLGHAATADGRWRIYAFADAADPAGPGSALDALCEFLAESPDSPLRRFTPSGADI 538 (634)
T ss_pred cCCCCceeCCCCceeec--cCCCchhHhhhcccCCCEEEEEEcCCCCcchhHHHHHHHHHHHhhCccchHhhcCCCCCCC
Confidence 45789999999987643 25667766643 478998888743333444444444443331 111111
Q ss_pred ---cEEEEEeCCCHH--hHHhhccCccccCCCCcc-ce-eEEeeC--cchhHHhhcCcccCCCCcccceeEEEEEEEecC
Q psy17178 115 ---TEVVAASVDSHF--THLAWVNTPRKEGGLGKL-KI-PLLSDL--THKISLDYGVYLSDQGPVRGSLLSTAIFVYALT 185 (384)
Q Consensus 115 ---v~vi~Vs~d~~~--~~~~~~~~~~~~~~~~~~-~~-p~l~D~--~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~ 185 (384)
++++.|...+.. .+.++-+.+.......++ .| -++.|. .++..+.|||-.+ + -+++|+-||
T Consensus 539 ~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~-----~-----g~~vvvRPD 608 (634)
T PRK08294 539 DAVIDVRAIFQQPHRELDLEDVPALLLPRKGRFGLTDYEKVFCADLSGADIFDLRGIDRD-----R-----GAVVVVRPD 608 (634)
T ss_pred CcEEEEEEEecCCCCccchhhCcHhhCCcccccCccchhheecCCCchhhHHHhhCCCCC-----c-----eeEEEECCC
Confidence 466666554311 111111111111000122 22 244543 2457788887221 1 356799999
Q ss_pred CCcc
Q psy17178 186 SPVN 189 (384)
Q Consensus 186 G~v~ 189 (384)
|-|.
T Consensus 609 ~~v~ 612 (634)
T PRK08294 609 QYVA 612 (634)
T ss_pred CceE
Confidence 9774
No 396
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=65.74 E-value=11 Score=28.93 Aligned_cols=32 Identities=9% Similarity=0.146 Sum_probs=19.6
Q ss_pred EEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy17178 275 FFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 314 (384)
Q Consensus 275 l~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~ 314 (384)
+.|. .+|||.|...-..|.+ .++.+-.+.+|.
T Consensus 11 vvys-k~~Cp~C~~ak~~L~~-------~~i~~~~vdid~ 42 (99)
T TIGR02189 11 VIFS-RSSCCMCHVVKRLLLT-------LGVNPAVHEIDK 42 (99)
T ss_pred EEEE-CCCCHHHHHHHHHHHH-------cCCCCEEEEcCC
Confidence 3444 8999999876554433 345555566653
No 397
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=63.21 E-value=19 Score=26.96 Aligned_cols=45 Identities=7% Similarity=-0.085 Sum_probs=23.5
Q ss_pred CCCeEEEEEEeC----CCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHH
Q psy17178 269 YGKYLVFFFYPL----DFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW 321 (384)
Q Consensus 269 ~Gk~vvl~F~~a----~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~ 321 (384)
+.++++|+-- + +|||.|......|.+ .++.+-.+.++.....++.
T Consensus 6 ~~~~vvvf~k-~~~~~~~Cp~C~~ak~~L~~-------~~i~y~~idv~~~~~~~~~ 54 (90)
T cd03028 6 KENPVVLFMK-GTPEEPRCGFSRKVVQILNQ-------LGVDFGTFDILEDEEVRQG 54 (90)
T ss_pred ccCCEEEEEc-CCCCCCCCcHHHHHHHHHHH-------cCCCeEEEEcCCCHHHHHH
Confidence 4455555432 2 488888765554443 3455666665433333333
No 398
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=61.64 E-value=32 Score=24.79 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=16.7
Q ss_pred CCCCCCchHHHHHHHHhHHHH
Q psy17178 90 LDFTFVCPTEILAFNDRLEEF 110 (384)
Q Consensus 90 ~~~cp~C~~~~~~l~~~~~~~ 110 (384)
+..||.|......+++..+++
T Consensus 7 ~~~C~~C~~~~~~~~~~~~~~ 27 (76)
T PF13192_consen 7 SPGCPYCPELVQLLKEAAEEL 27 (76)
T ss_dssp CSSCTTHHHHHHHHHHHHHHT
T ss_pred CCCCCCcHHHHHHHHHHHHhc
Confidence 666999998788777777665
No 399
>PRK10638 glutaredoxin 3; Provisional
Probab=61.44 E-value=23 Score=25.97 Aligned_cols=32 Identities=13% Similarity=0.183 Sum_probs=21.0
Q ss_pred EEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCH
Q psy17178 277 FYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSH 315 (384)
Q Consensus 277 F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~ 315 (384)
+|...+||.|......|++ .++.+--+.+|..
T Consensus 6 ly~~~~Cp~C~~a~~~L~~-------~gi~y~~~dv~~~ 37 (83)
T PRK10638 6 IYTKATCPFCHRAKALLNS-------KGVSFQEIPIDGD 37 (83)
T ss_pred EEECCCChhHHHHHHHHHH-------cCCCcEEEECCCC
Confidence 3348899999877666653 4566666666543
No 400
>KOG0914|consensus
Probab=60.55 E-value=15 Score=32.67 Aligned_cols=41 Identities=10% Similarity=0.163 Sum_probs=32.8
Q ss_pred CeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeC
Q psy17178 271 KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV 312 (384)
Q Consensus 271 k~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~ 312 (384)
++=+|.|| +.|.|-|....|-+.++..+|...+..+=-|.+
T Consensus 145 t~WlIeFf-a~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDi 185 (265)
T KOG0914|consen 145 TYWLIEFF-ACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDI 185 (265)
T ss_pred eEEEEEEE-eecChhhcccccccHHHHHHhCCCCCcccceee
Confidence 45578888 999999999999999999999776665544443
No 401
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=60.46 E-value=17 Score=32.79 Aligned_cols=45 Identities=13% Similarity=0.183 Sum_probs=33.4
Q ss_pred ccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCC
Q psy17178 69 QLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN 114 (384)
Q Consensus 69 ~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~ 114 (384)
++..+...+..++++++.|. -.-||.|...++.+.+.+....+..
T Consensus 73 ~~~~~~~G~~~~~v~v~~f~-d~~Cp~C~~~~~~l~~~~i~~~~~~ 117 (244)
T COG1651 73 DGKDVVLGNPYAPVTVVEFF-DYTCPYCKEAFPELKKKYIDDGKVR 117 (244)
T ss_pred CCCcccccCCCCCceEEEEe-cCcCccHHHHHHHHHHHhhhcCCCc
Confidence 55556666666677777777 8889999999999998776655443
No 402
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=60.04 E-value=8.8 Score=33.90 Aligned_cols=38 Identities=13% Similarity=0.155 Sum_probs=27.2
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHH---HHHHHHHHhCCcEEE
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVV 308 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l---~~l~~~~~~~~v~vv 308 (384)
.|++.|+.|+ ..-||+|....+.+ ..+.+.+. .++.++
T Consensus 36 ~~~~~VvEff-dy~CphC~~~~~~l~~~~~~~~~~~-~~v~~~ 76 (207)
T PRK10954 36 AGEPQVLEFF-SFYCPHCYQFEEVYHVSDNVKKKLP-EGTKMT 76 (207)
T ss_pred CCCCeEEEEe-CCCCccHHHhcccccchHHHHHhCC-CCCeEE
Confidence 4677788888 88899999977755 56666654 344444
No 403
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=59.25 E-value=35 Score=24.16 Aligned_cols=28 Identities=14% Similarity=0.012 Sum_probs=20.0
Q ss_pred CCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy17178 280 LDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 314 (384)
Q Consensus 280 a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~ 314 (384)
.++||.|......|++ .|+.+-.+.++.
T Consensus 8 ~~~C~~C~ka~~~L~~-------~gi~~~~~di~~ 35 (73)
T cd03027 8 RLGCEDCTAVRLFLRE-------KGLPYVEINIDI 35 (73)
T ss_pred cCCChhHHHHHHHHHH-------CCCceEEEECCC
Confidence 7899999877666653 567777777653
No 404
>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.
Probab=59.23 E-value=38 Score=24.09 Aligned_cols=33 Identities=12% Similarity=0.129 Sum_probs=23.5
Q ss_pred ccceEEccccCCCeEEEEEeeCCCCCCchHHHHHH
Q psy17178 69 QLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAF 103 (384)
Q Consensus 69 ~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l 103 (384)
+|..+.+-++++..+.|.|- ++| ..|....-.+
T Consensus 15 dGGdv~lv~v~~~~V~V~l~-GaC-~gC~~s~~Tl 47 (68)
T PF01106_consen 15 DGGDVELVDVDDGVVYVRLT-GAC-SGCPSSDMTL 47 (68)
T ss_dssp TTEEEEEEEEETTEEEEEEE-SSC-CSSCCHHHHH
T ss_pred cCCcEEEEEecCCEEEEEEE-eCC-CCCCCHHHHH
Confidence 78889999998887888886 774 4455443333
No 405
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=58.64 E-value=26 Score=29.85 Aligned_cols=53 Identities=15% Similarity=0.204 Sum_probs=40.6
Q ss_pred HHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchhHHhh
Q psy17178 99 EILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDY 160 (384)
Q Consensus 99 ~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~y 160 (384)
-.|++.+..++.++.|+.++.+|-+.+...+.|.+ .+.+|+++-....+.++|
T Consensus 47 ~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~---------~l~v~fi~~A~KP~~~~f 99 (175)
T COG2179 47 ATPELRAWLAELKEAGIKVVVVSNNKESRVARAAE---------KLGVPFIYRAKKPFGRAF 99 (175)
T ss_pred CCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhh---------hcCCceeecccCccHHHH
Confidence 36888899999999999999999988888888887 346666665554444433
No 406
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=58.38 E-value=11 Score=33.17 Aligned_cols=39 Identities=13% Similarity=0.148 Sum_probs=27.5
Q ss_pred CCCeEEEEEeeCCCCCCchHHHHHH---HHhHHHHHhCCcEEEE
Q psy17178 79 YGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVA 119 (384)
Q Consensus 79 ~gk~vvl~f~~~~~cp~C~~~~~~l---~~~~~~~~~~~v~vi~ 119 (384)
.|++.|+.|+ ...||.|...-+.+ .++.+.+. .++.++-
T Consensus 36 ~~~~~VvEff-dy~CphC~~~~~~l~~~~~~~~~~~-~~v~~~~ 77 (207)
T PRK10954 36 AGEPQVLEFF-SFYCPHCYQFEEVYHVSDNVKKKLP-EGTKMTK 77 (207)
T ss_pred CCCCeEEEEe-CCCCccHHHhcccccchHHHHHhCC-CCCeEEE
Confidence 5788889999 88899999876654 55555553 4555443
No 407
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=58.05 E-value=15 Score=33.42 Aligned_cols=32 Identities=28% Similarity=0.258 Sum_probs=22.7
Q ss_pred CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHH
Q psy17178 79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 111 (384)
Q Consensus 79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~ 111 (384)
.||+.|++.- +.|||+|..+.=.|-....+|.
T Consensus 57 ~Gk~~v~~ig-w~gCP~~A~~sW~L~~ALsrfG 88 (249)
T PF06053_consen 57 NGKPEVIFIG-WEGCPYCAAESWALYIALSRFG 88 (249)
T ss_pred CCeeEEEEEe-cccCccchhhHHHHHHHHHhcC
Confidence 4787665555 9999999998655555556664
No 408
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=57.05 E-value=89 Score=26.60 Aligned_cols=108 Identities=14% Similarity=0.047 Sum_probs=54.5
Q ss_pred CCCCCCCCCCceeeeEEcCcceeeecccc---CCCeEEEEEEeCCCCcCchHhHHHHHHHHH-------HHHhC------
Q psy17178 240 IPFVSKPAPFWQGTAVVDGQLKEIKLSDY---YGKYLVFFFYPLDFTFVCPTEILAFNDRLE-------EFHQI------ 303 (384)
Q Consensus 240 ~~~~g~~~P~f~l~~l~d~~g~~~~l~d~---~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~-------~~~~~------ 303 (384)
...+|..+|+..+.. =.+|+++.|.+. .|++-|+.|--..-.+.+...+..+.+..+ .|...
T Consensus 29 ~l~~G~Rlp~~~v~r--~aD~~p~~l~~~l~sdGrfri~vFagd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~~~~s 106 (169)
T PF07976_consen 29 GLRPGRRLPSAKVVR--HADGNPVHLQDDLPSDGRFRILVFAGDISLPEQLSRLSALADYLESPSSFLSRFTPKDRDPDS 106 (169)
T ss_dssp TS-TTCB----EEEE--TTTTEEEEGGGG--SSS-EEEEEEEETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS-TTS
T ss_pred CcCCccccCCceEEE--EcCCCChhHhhhcccCCCEEEEEEeCCCccchhHHHHHHHHHHHHhcchHHHhcCCCCCCCCC
Confidence 346899999999874 468999999985 689988888733334444434444444332 33221
Q ss_pred CcEEEEEeCCCH-----HhHHHHhcCccccCCCCC-cceeEEecC------chHHHHHhCc
Q psy17178 304 NTEVVAASVDSH-----FTHLAWVNTPRKEGGLGK-LKIPLLSDL------THKISLDYGV 352 (384)
Q Consensus 304 ~v~vv~Is~d~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~D~------~~~~~~~~gv 352 (384)
-+.++.|...+. .++.+....+.... + ..+.++.|. .+.+.+.|||
T Consensus 107 ~~~~~~I~~~~~~~~e~~dlP~~~~p~~~~~---~~~~~~vy~Dd~~~~~~~g~~y~~~Gi 164 (169)
T PF07976_consen 107 VFDVLLIHSSPRDEVELFDLPEIFRPFDGKR---GWDYWKVYVDDESYHSGHGDAYEKYGI 164 (169)
T ss_dssp SEEEEEEESS-CCCS-GGGS-CCCS-EETTT---TC--SSEEE-S-SSSSTT--HHHHCTB
T ss_pred eeEEEEEecCCCCceeHHHCcHhhCcccCCC---CccceeEEecCcccccCcccHHHhhCC
Confidence 278888875421 12222222221111 2 345666664 3788888886
No 409
>KOG2961|consensus
Probab=56.86 E-value=31 Score=28.93 Aligned_cols=83 Identities=16% Similarity=0.165 Sum_probs=51.4
Q ss_pred CCCceeeeEEcCcceeeeccccCC-CeEEEEEEeCCCC-------cCchHhHHHHHHHHHHHHhCCcEEEEEeC-----C
Q psy17178 247 APFWQGTAVVDGQLKEIKLSDYYG-KYLVFFFYPLDFT-------FVCPTEILAFNDRLEEFHQINTEVVAASV-----D 313 (384)
Q Consensus 247 ~P~f~l~~l~d~~g~~~~l~d~~G-k~vvl~F~~a~~c-------~~C~~~~~~l~~l~~~~~~~~v~vv~Is~-----d 313 (384)
.|..+.+++ .--+....+++| |.+|+. ...| .+-+.+++.+++....|.++++.+++-|. |
T Consensus 22 ~Ph~~vptf---~~ip~~I~~~~~ikavVlD---KDNcit~P~~~~Iwp~~l~~ie~~~~vygek~i~v~SNsaG~~~~D 95 (190)
T KOG2961|consen 22 LPHVSVPTF---RYIPWEILKRKGIKAVVLD---KDNCITAPYSLAIWPPLLPSIERCKAVYGEKDIAVFSNSAGLTEYD 95 (190)
T ss_pred ccccccCcc---ccCCcchhhccCceEEEEc---CCCeeeCCcccccCchhHHHHHHHHHHhCcccEEEEecCcCccccC
Confidence 444444444 223556666667 655554 3333 23457899999999999988888877765 3
Q ss_pred CHHhHHHHhcCccccCCCCCcceeEEecCc
Q psy17178 314 SHFTHLAWVNTPRKEGGLGKLKIPLLSDLT 343 (384)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 343 (384)
...+.++-.++ .+..|++-...
T Consensus 96 ~d~s~Ak~le~--------k~gIpVlRHs~ 117 (190)
T KOG2961|consen 96 HDDSKAKALEA--------KIGIPVLRHSV 117 (190)
T ss_pred CchHHHHHHHH--------hhCCceEeecc
Confidence 34445554443 57788876543
No 410
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=56.34 E-value=16 Score=28.97 Aligned_cols=64 Identities=5% Similarity=-0.015 Sum_probs=39.5
Q ss_pred EEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeC--CC--HHhHHhhccCccccCCCCccceeEEeeCcchhHHhh
Q psy17178 85 FFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV--DS--HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDY 160 (384)
Q Consensus 85 l~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~--d~--~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~y 160 (384)
+.+|....|+.|++....|.+ +|+.+-.+.. ++ .+.+.+|.+.. +.++.-+....+...+..
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~-------~gi~~~~idi~~~~~~~~el~~~~~~~-------~~~~~~l~n~~~~~~k~l 67 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEE-------HQIPFEERNLFKQPLTKEELKEILSLT-------ENGVEDIISTRSKAFKNL 67 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------CCCceEEEecCCCcchHHHHHHHHHHh-------cCCHHHHHhcCcHHHHHc
Confidence 345658899999987766655 4555555554 33 56667777643 334554555566666666
Q ss_pred cC
Q psy17178 161 GV 162 (384)
Q Consensus 161 gv 162 (384)
+.
T Consensus 68 ~~ 69 (115)
T cd03032 68 NI 69 (115)
T ss_pred CC
Confidence 64
No 411
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=56.29 E-value=43 Score=34.28 Aligned_cols=103 Identities=11% Similarity=-0.048 Sum_probs=62.4
Q ss_pred cccCCCCCCccEEEeeecCccceEEccccCC-CeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhH
Q psy17178 50 SKNLSKPAPFWQGTAVVDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH 128 (384)
Q Consensus 50 ~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~g-k~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~ 128 (384)
...+|+.+|+..+.+ ++|....++++.| ++++|.|... |..... +.. .+.+...+..++.+......
T Consensus 410 ~~~~G~~~p~~~~~~---~~~~~~~~d~~~~~~~~ll~~~~~---~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~-- 477 (538)
T PRK06183 410 HSPVGTLFPQPRVEL---GGGDRGLLDDVLGPGFAVLGWGCD---PLAGLS-DEQ---RARWRALGARFVQVVPAVQA-- 477 (538)
T ss_pred CCCcccCcCCCeeEc---CCCCcccchhccCCceEEEEecCC---chhcCC-HHH---HHHHHHcCCeEEEEeccccc--
Confidence 456899999988743 2444456777877 4888877411 211111 111 12244567777776543211
Q ss_pred HhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcc
Q psy17178 129 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVN 189 (384)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~ 189 (384)
.+ -..+.+.|.++.+++.|+.. + ...+||-||+.|.
T Consensus 478 -~~------------~~~~~~~d~~g~~~~~~~~~--------~----~~~~lvRPD~~v~ 513 (538)
T PRK06183 478 -HT------------AQDDHDSDVDGALRAWLARH--------G----ASAVLLRPDRYVA 513 (538)
T ss_pred -cc------------CCCceeecCCchHHHHHHhC--------C----CEEEEECCCEEEE
Confidence 01 13457899999999999971 1 2457999999885
No 412
>KOG0914|consensus
Probab=54.81 E-value=20 Score=31.88 Aligned_cols=35 Identities=11% Similarity=0.189 Sum_probs=29.5
Q ss_pred CeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcE
Q psy17178 81 KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTE 116 (384)
Q Consensus 81 k~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~ 116 (384)
+.-+|.|| +.|.|-|+...|-+.++..+|.-.+..
T Consensus 145 t~WlIeFf-a~ws~~Cv~~spvfaeLS~kyn~~~lk 179 (265)
T KOG0914|consen 145 TYWLIEFF-ACWSPKCVRFSPVFAELSIKYNNNLLK 179 (265)
T ss_pred eEEEEEEE-eecChhhcccccccHHHHHHhCCCCCc
Confidence 35688899 999999999999999999999765443
No 413
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=54.44 E-value=10 Score=29.81 Aligned_cols=41 Identities=12% Similarity=0.238 Sum_probs=25.7
Q ss_pred EeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEe--CCC--HHhHHhhccC
Q psy17178 87 FYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAAS--VDS--HFTHLAWVNT 134 (384)
Q Consensus 87 f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs--~d~--~~~~~~~~~~ 134 (384)
+|...+||.|++....|.+ +|+.+-.+. .++ .+.+.+|.+.
T Consensus 3 iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~el~~~~~~ 47 (111)
T cd03036 3 FYEYPKCSTCRKAKKWLDE-------HGVDYTAIDIVEEPPSKEELKKWLEK 47 (111)
T ss_pred EEECCCCHHHHHHHHHHHH-------cCCceEEecccCCcccHHHHHHHHHH
Confidence 4558899999988766665 455444444 343 4556666653
No 414
>PHA03075 glutaredoxin-like protein; Provisional
Probab=53.76 E-value=9.3 Score=30.21 Aligned_cols=39 Identities=15% Similarity=0.280 Sum_probs=29.5
Q ss_pred CeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEE
Q psy17178 271 KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAA 310 (384)
Q Consensus 271 k~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~I 310 (384)
|.++|-|. -.-|+.|......|.++.++|.=..|.++++
T Consensus 2 K~tLILfG-KP~C~vCe~~s~~l~~ledeY~ilrVNIlSf 40 (123)
T PHA03075 2 KKTLILFG-KPLCSVCESISEALKELEDEYDILRVNILSF 40 (123)
T ss_pred CceEEEeC-CcccHHHHHHHHHHHHhhccccEEEEEeeee
Confidence 56888898 8999999999998988888774333444443
No 415
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=53.67 E-value=24 Score=31.76 Aligned_cols=45 Identities=13% Similarity=0.183 Sum_probs=33.6
Q ss_pred cceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCC
Q psy17178 259 QLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN 304 (384)
Q Consensus 259 ~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~ 304 (384)
++...-..+..++++++.|. -.-||.|....+.+.+.+....+..
T Consensus 73 ~~~~~~~G~~~~~v~v~~f~-d~~Cp~C~~~~~~l~~~~i~~~~~~ 117 (244)
T COG1651 73 DGKDVVLGNPYAPVTVVEFF-DYTCPYCKEAFPELKKKYIDDGKVR 117 (244)
T ss_pred CCCcccccCCCCCceEEEEe-cCcCccHHHHHHHHHHHhhhcCCCc
Confidence 55555555666688888887 8889999999999999776665443
No 416
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=53.65 E-value=73 Score=31.72 Aligned_cols=53 Identities=4% Similarity=-0.105 Sum_probs=40.9
Q ss_pred cceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC
Q psy17178 259 QLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD 313 (384)
Q Consensus 259 ~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d 313 (384)
+|+.+++.+++|..-+|..- ++ -..|...+...++..+++.+.||-||.|..+
T Consensus 285 ~~~~v~l~~LRg~~RvvIvA-G~-~e~v~~al~~ae~~r~~L~~r~VlvVPv~~~ 337 (453)
T PLN03098 285 TNRIVELVQLRDITRPVILA-GT-KESVTLAMQKAERYRTELLKRGVLLIPVVWG 337 (453)
T ss_pred CCCEEeHHHhcCcceEEEEE-CC-HHHHHHHHHHhHHHHHHHHHcCcEEEEEecC
Confidence 57799999999964333332 33 4567788888899999999999999999765
No 417
>KOG0911|consensus
Probab=53.34 E-value=6 Score=35.14 Aligned_cols=39 Identities=26% Similarity=0.334 Sum_probs=28.7
Q ss_pred CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEE
Q psy17178 79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAA 120 (384)
Q Consensus 79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~V 120 (384)
+++..++.|| +.||.+|..-..-+..+.+.+ .+++++-+
T Consensus 16 ~~~~~~~~f~-a~wa~~~~q~~~v~~~~~~~~--~~~~~~k~ 54 (227)
T KOG0911|consen 16 KGKLLVLHFW-AIWAVVQKQMDQVFDHLAEYF--KNAQFLKL 54 (227)
T ss_pred ccchhhhhhh-hhhhhhhhhHHHHHHHHHHhh--hhheeeee
Confidence 7788999999 999999987766666666655 34444433
No 418
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=52.74 E-value=15 Score=29.93 Aligned_cols=64 Identities=5% Similarity=-0.045 Sum_probs=37.0
Q ss_pred EEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEe--CCC--HHhHHhhccCccccCCCCccceeEEeeCcchhHHhh
Q psy17178 85 FFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAAS--VDS--HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDY 160 (384)
Q Consensus 85 l~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs--~d~--~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~y 160 (384)
+.+|...+||.|++....|.+ +|+.+-.+. .++ .+.+.+|.+.. +.++.-+....+...+..
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~-------~gi~~~~idi~~~~~~~~eL~~~l~~~-------~~g~~~lin~~~~~~k~l 67 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEE-------HDIPFTERNIFSSPLTIDEIKQILRMT-------EDGTDEIISTRSKVFQKL 67 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------cCCCcEEeeccCChhhHHHHHHHHHHh-------cCCHHHHHhcCcHHHHhC
Confidence 445668999999987655544 455554454 333 45666666642 233434444455555555
Q ss_pred cC
Q psy17178 161 GV 162 (384)
Q Consensus 161 gv 162 (384)
+.
T Consensus 68 ~~ 69 (131)
T PRK01655 68 NV 69 (131)
T ss_pred CC
Confidence 54
No 419
>PF06462 Hyd_WA: Propeller; InterPro: IPR006624 Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) which encode 217 and 353 amino acids, respectively. Tectonin I is homologous to the C-terminal two-thirds of tectonin II. Both proteins contain six tandem repeats that are each 33-37 amino acids in length and define a new consensus sequence. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis [].
Probab=52.63 E-value=15 Score=21.91 Aligned_cols=29 Identities=17% Similarity=0.314 Sum_probs=23.9
Q ss_pred EEEEEecCCCcccccceeeeeccCCcccee
Q psy17178 178 AIFVYALTSPVNGYAGGALYSRLGGRAWIR 207 (384)
Q Consensus 178 ~~~vid~~G~v~~~~~g~~~p~~~g~~wk~ 207 (384)
++..++.+|.| .++.|+......|..|+.
T Consensus 2 ~VWav~~~G~v-~~R~Gis~~~P~G~~W~~ 30 (32)
T PF06462_consen 2 QVWAVTSDGSV-YFRTGISPSNPEGTSWEH 30 (32)
T ss_pred eEEEEcCCCCE-EEECcCCCCCCCCCCcEE
Confidence 36788999999 578899988888888875
No 420
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=52.30 E-value=16 Score=28.24 Aligned_cols=41 Identities=5% Similarity=-0.059 Sum_probs=24.7
Q ss_pred EEeeCCCCCCchHHHHHHHHhHHHHHhCCcE--EEEEeCCC--HHhHHhhcc
Q psy17178 86 FFYPLDFTFVCPTEILAFNDRLEEFHQINTE--VVAASVDS--HFTHLAWVN 133 (384)
Q Consensus 86 ~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~--vi~Vs~d~--~~~~~~~~~ 133 (384)
.+|...+||.|++....|++ +|+. .+-|..++ .+.+.++..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~~l~~~~~ 46 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEE-------HGIEYEFIDYLKEPPTKEELKELLA 46 (105)
T ss_pred EEEECCCCHHHHHHHHHHHH-------cCCCcEEEeeccCCCCHHHHHHHHH
Confidence 34558899999988766655 4544 44443333 455555554
No 421
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=52.12 E-value=35 Score=33.86 Aligned_cols=52 Identities=6% Similarity=-0.086 Sum_probs=40.3
Q ss_pred ccceEEccccCCCe-EEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178 69 QLKEIKLSDYYGKY-LVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD 123 (384)
Q Consensus 69 ~g~~~~l~~~~gk~-vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d 123 (384)
+|+.++|.++||.. +||.-.++ ..|...+...+...+++.+.||-||-|..+
T Consensus 285 ~~~~v~l~~LRg~~RvvIvAG~~---e~v~~al~~ae~~r~~L~~r~VlvVPv~~~ 337 (453)
T PLN03098 285 TNRIVELVQLRDITRPVILAGTK---ESVTLAMQKAERYRTELLKRGVLLIPVVWG 337 (453)
T ss_pred CCCEEeHHHhcCcceEEEEECCH---HHHHHHHHHhHHHHHHHHHcCcEEEEEecC
Confidence 56789999999963 44443323 557788888889999999999999988775
No 422
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=51.13 E-value=34 Score=35.11 Aligned_cols=101 Identities=16% Similarity=0.095 Sum_probs=60.4
Q ss_pred cccCCCCCCccEEEeeecCccceEEccccCC-CeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhH
Q psy17178 50 SKNLSKPAPFWQGTAVVDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH 128 (384)
Q Consensus 50 ~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~g-k~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~ 128 (384)
...+|..+|+..+. . +|+..++.|+.| +++||.|-... .. ....+.. .....++.++.+..+...
T Consensus 426 ~~~pG~r~p~~~~~-~---~~~~~~l~dl~g~~f~ll~~~~~~-----~~--~~~~~~~-~~~~~~~~~~~~~~~~~~-- 491 (547)
T PRK08132 426 GPVPGAPAPDAPVR-A---DGEPGWLLDLLGGGFTLLLFGDDA-----AA--AALLQAL-AAAALPVRVVAVVPAGAA-- 491 (547)
T ss_pred CCCCCCCCCCCccc-C---CCCceEHHHhcCCCEEEEEecCCc-----hh--hhhhhhh-hccCCceEEEEEecCccc--
Confidence 35689999998864 2 567788999977 47777665221 11 1111111 112334555555443211
Q ss_pred HhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccc
Q psy17178 129 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNG 190 (384)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~ 190 (384)
. .+...+.|.++.+++.||+.. ...+||-|||-|.+
T Consensus 492 ---~-----------~~~~~~~d~~~~~~~~~~~~~------------~~~~LvRPDg~va~ 527 (547)
T PRK08132 492 ---Q-----------AAAGVLEDADGLAAERYDARP------------GTVYLIRPDQHVAA 527 (547)
T ss_pred ---c-----------cCcccccCcccHHHHHhCCCC------------CeEEEECCCceEEE
Confidence 0 122357899999999999821 23579999998864
No 423
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=50.56 E-value=20 Score=29.19 Aligned_cols=64 Identities=5% Similarity=-0.031 Sum_probs=35.7
Q ss_pred EEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeC--CC--HHhHHHHhcCccccCCCCCcceeEEecCchHHHHHh
Q psy17178 275 FFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV--DS--HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDY 350 (384)
Q Consensus 275 l~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~--d~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 350 (384)
|.+|...+|+.|+.....| .+.|+.+-.+.+ ++ .+.+.++++.. +..+.-+....+...+..
T Consensus 2 i~iY~~~~C~~C~ka~~~L-------~~~gi~~~~idi~~~~~~~~eL~~~l~~~-------~~g~~~lin~~~~~~k~l 67 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWL-------EEHDIPFTERNIFSSPLTIDEIKQILRMT-------EDGTDEIISTRSKVFQKL 67 (131)
T ss_pred EEEEeCCCChHHHHHHHHH-------HHcCCCcEEeeccCChhhHHHHHHHHHHh-------cCCHHHHHhcCcHHHHhC
Confidence 3455589999998865444 334555555553 33 35667777654 333333334445555554
Q ss_pred Cc
Q psy17178 351 GV 352 (384)
Q Consensus 351 gv 352 (384)
+.
T Consensus 68 ~~ 69 (131)
T PRK01655 68 NV 69 (131)
T ss_pred CC
Confidence 43
No 424
>PRK10824 glutaredoxin-4; Provisional
Probab=50.19 E-value=29 Score=27.58 Aligned_cols=26 Identities=4% Similarity=-0.007 Sum_probs=17.5
Q ss_pred CCeEEEEEeeC----CCCCCchHHHHHHHHh
Q psy17178 80 GKYLVFFFYPL----DFTFVCPTEILAFNDR 106 (384)
Q Consensus 80 gk~vvl~f~~~----~~cp~C~~~~~~l~~~ 106 (384)
.++|||+-- + .+||+|.+-..-|++.
T Consensus 14 ~~~Vvvf~K-g~~~~p~Cpyc~~ak~lL~~~ 43 (115)
T PRK10824 14 ENPILLYMK-GSPKLPSCGFSAQAVQALSAC 43 (115)
T ss_pred cCCEEEEEC-CCCCCCCCchHHHHHHHHHHc
Confidence 356665544 4 4999999877666553
No 425
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=50.00 E-value=23 Score=28.09 Aligned_cols=62 Identities=10% Similarity=-0.041 Sum_probs=36.4
Q ss_pred EeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC--C--HHhHHhhccCccccCCCCccceeEEeeCcchhHHhhcC
Q psy17178 87 FYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD--S--HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGV 162 (384)
Q Consensus 87 f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d--~--~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv 162 (384)
+|....||.|++....|.+ +|+.+..+... + .+...+|.+.. +..+.-+....+...+..+.
T Consensus 3 iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~el~~l~~~~-------~~~~~~lin~~~~~~k~l~~ 68 (117)
T TIGR01617 3 VYGSPNCTTCKKARRWLEA-------NGIEYQFIDIGEDGPTREELLDILSLL-------EDGIDPLLNTRGQSYRALNT 68 (117)
T ss_pred EEeCCCCHHHHHHHHHHHH-------cCCceEEEecCCChhhHHHHHHHHHHc-------CCCHHHheeCCCcchhhCCc
Confidence 4458899999988776665 45655555543 2 34455555532 33444455555666666553
No 426
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=49.86 E-value=33 Score=29.26 Aligned_cols=39 Identities=15% Similarity=0.133 Sum_probs=33.7
Q ss_pred hHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCc
Q psy17178 287 PTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTP 325 (384)
Q Consensus 287 ~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~ 325 (384)
+.-.|++.+..++.++.|..++-+|-+++...+.|.+.+
T Consensus 45 ~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l 83 (175)
T COG2179 45 PDATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKL 83 (175)
T ss_pred CCCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhc
Confidence 355788999999999999999999999988888888854
No 427
>PHA03075 glutaredoxin-like protein; Provisional
Probab=48.70 E-value=13 Score=29.42 Aligned_cols=30 Identities=20% Similarity=0.299 Sum_probs=23.9
Q ss_pred CeEEEEEeeCCCCCCchHHHHHHHHhHHHHH
Q psy17178 81 KYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 111 (384)
Q Consensus 81 k~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~ 111 (384)
|.+++.|. -..|+.|...-..|.++.++|.
T Consensus 2 K~tLILfG-KP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFG-KPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeC-CcccHHHHHHHHHHHHhhcccc
Confidence 56788888 9999999988877777766653
No 428
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=48.30 E-value=25 Score=25.74 Aligned_cols=35 Identities=14% Similarity=-0.017 Sum_probs=24.3
Q ss_pred EEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEe
Q psy17178 85 FFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAAS 121 (384)
Q Consensus 85 l~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs 121 (384)
..|+ ...||.|....+.+.++.+.. ..++.+.-+.
T Consensus 2 ~~f~-d~~Cp~C~~~~~~l~~~~~~~-~~~~~~~~~~ 36 (98)
T cd02972 2 VEFF-DPLCPYCYLFEPELEKLLYAD-DGGVRVVYRP 36 (98)
T ss_pred eEEE-CCCCHhHHhhhHHHHHHHhhc-CCcEEEEEec
Confidence 3455 889999999999998887433 3456555443
No 429
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=48.27 E-value=29 Score=27.37 Aligned_cols=63 Identities=5% Similarity=-0.014 Sum_probs=37.7
Q ss_pred EEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeC--C--CHHhHHHHhcCccccCCCCCcceeEEecCchHHHHHhC
Q psy17178 276 FFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV--D--SHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYG 351 (384)
Q Consensus 276 ~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~--d--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 351 (384)
.+|...+|+.|+.....|++ .|+.+-.+.+ + +.+.+.+|++.. +.++.-+....+...+..+
T Consensus 3 ~iY~~~~C~~c~ka~~~L~~-------~gi~~~~idi~~~~~~~~el~~~~~~~-------~~~~~~l~n~~~~~~k~l~ 68 (115)
T cd03032 3 KLYTSPSCSSCRKAKQWLEE-------HQIPFEERNLFKQPLTKEELKEILSLT-------ENGVEDIISTRSKAFKNLN 68 (115)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------CCCceEEEecCCCcchHHHHHHHHHHh-------cCCHHHHHhcCcHHHHHcC
Confidence 34558889999876655544 4566655654 3 346777777755 3344444455555566555
Q ss_pred c
Q psy17178 352 V 352 (384)
Q Consensus 352 v 352 (384)
.
T Consensus 69 ~ 69 (115)
T cd03032 69 I 69 (115)
T ss_pred C
Confidence 3
No 430
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=48.20 E-value=25 Score=27.79 Aligned_cols=61 Identities=10% Similarity=-0.036 Sum_probs=35.0
Q ss_pred EEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC----CHHhHHHHhcCccccCCCCCcceeEEecCchHHHHHhC
Q psy17178 277 FYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD----SHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYG 351 (384)
Q Consensus 277 F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 351 (384)
+|....|+.|+.....|.+ .|+.+-.++.. +.+.+.++++.. +..+.-+....+...+..+
T Consensus 3 iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~el~~l~~~~-------~~~~~~lin~~~~~~k~l~ 67 (117)
T TIGR01617 3 VYGSPNCTTCKKARRWLEA-------NGIEYQFIDIGEDGPTREELLDILSLL-------EDGIDPLLNTRGQSYRALN 67 (117)
T ss_pred EEeCCCCHHHHHHHHHHHH-------cCCceEEEecCCChhhHHHHHHHHHHc-------CCCHHHheeCCCcchhhCC
Confidence 3447889999877665554 45666566542 234566666654 4344434444555555554
No 431
>PRK06184 hypothetical protein; Provisional
Probab=48.10 E-value=47 Score=33.58 Aligned_cols=91 Identities=11% Similarity=-0.006 Sum_probs=57.5
Q ss_pred cccCCCCCCccEEEeeecCccceEEccccC--CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHh
Q psy17178 50 SKNLSKPAPFWQGTAVVDGQLKEIKLSDYY--GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT 127 (384)
Q Consensus 50 ~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~--gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~ 127 (384)
.+.+|..+|+..+... +|+++++-|+- +++++|.|-...+ ... ...++.++.|....
T Consensus 385 ~~~~G~r~p~~~~~~~---~~~~~~l~d~~~~~~~~ll~~~~~~~--------~~~-------~~~~~~~~~~~~~~--- 443 (502)
T PRK06184 385 GLRAGDRAPDAPLLGA---AGQPTRLFDLFRGPHWTLLAFGAGAA--------AIL-------ARRGLRIHRVGDAA--- 443 (502)
T ss_pred CCCCcCCCCCchhccC---CCceeeHHHhhCCCcEEEEEecCCch--------hhh-------hhcCceEEEecccC---
Confidence 4678999999987543 66777777763 4788887653222 000 12355555443211
Q ss_pred HHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccc
Q psy17178 128 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNG 190 (384)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~ 190 (384)
....+.|.++.+.+.|++.. ...+||-|||-|.+
T Consensus 444 -----------------~~~~~~d~~g~~~~~~~~~~------------~~~~lvRPDg~v~~ 477 (502)
T PRK06184 444 -----------------EGGDLVDDAGHFRDAYGLTG------------GTLVLVRPDGYVGL 477 (502)
T ss_pred -----------------CCCceeCCCccHHHHhcCCC------------CcEEEECCCcceEE
Confidence 01236888999999999821 23579999998864
No 432
>PRK10824 glutaredoxin-4; Provisional
Probab=47.11 E-value=38 Score=26.96 Aligned_cols=38 Identities=5% Similarity=-0.144 Sum_probs=21.3
Q ss_pred CCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCc
Q psy17178 281 DFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTP 325 (384)
Q Consensus 281 ~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~ 325 (384)
++||.|......|..+ ++.+-.+.++.....++.+.+.
T Consensus 28 p~Cpyc~~ak~lL~~~-------~i~~~~idi~~d~~~~~~l~~~ 65 (115)
T PRK10824 28 PSCGFSAQAVQALSAC-------GERFAYVDILQNPDIRAELPKY 65 (115)
T ss_pred CCCchHHHHHHHHHHc-------CCCceEEEecCCHHHHHHHHHH
Confidence 4999998776655554 3444445554333445544443
No 433
>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.
Probab=47.08 E-value=80 Score=22.40 Aligned_cols=41 Identities=10% Similarity=0.107 Sum_probs=28.9
Q ss_pred cceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHH-HHHHHHH
Q psy17178 259 QLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFN-DRLEEFH 301 (384)
Q Consensus 259 ~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~-~l~~~~~ 301 (384)
+|..+.+-++++..+.|.|- +. |..|+.....+. .+.++++
T Consensus 15 dGGdv~lv~v~~~~V~V~l~-Ga-C~gC~~s~~Tl~~~Ie~~L~ 56 (68)
T PF01106_consen 15 DGGDVELVDVDDGVVYVRLT-GA-CSGCPSSDMTLKQGIEQALR 56 (68)
T ss_dssp TTEEEEEEEEETTEEEEEEE-SS-CCSSCCHHHHHHHHHHHHHH
T ss_pred cCCcEEEEEecCCEEEEEEE-eC-CCCCCCHHHHHHHHHHHHHH
Confidence 78889999998887778876 66 557877666663 3344444
No 434
>KOG3414|consensus
Probab=46.77 E-value=74 Score=25.77 Aligned_cols=45 Identities=13% Similarity=0.155 Sum_probs=34.6
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCH
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSH 315 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~ 315 (384)
..|.+||-|. -.|-|.|...=..|.+..++..+- ..+.-+.+|..
T Consensus 22 ~~rlvViRFG-r~~Dp~C~~mD~~L~~i~~~vsnf-a~IylvdideV 66 (142)
T KOG3414|consen 22 EERLVVIRFG-RDWDPTCMKMDELLSSIAEDVSNF-AVIYLVDIDEV 66 (142)
T ss_pred cceEEEEEec-CCCCchHhhHHHHHHHHHHHHhhc-eEEEEEecchh
Confidence 4589999999 899999999988899998887532 34555566643
No 435
>PRK12559 transcriptional regulator Spx; Provisional
Probab=46.43 E-value=27 Score=28.46 Aligned_cols=64 Identities=8% Similarity=0.022 Sum_probs=37.9
Q ss_pred EEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEe--CCC--HHhHHhhccCccccCCCCccceeEEeeCcchhHHhh
Q psy17178 85 FFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAAS--VDS--HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDY 160 (384)
Q Consensus 85 l~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs--~d~--~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~y 160 (384)
+.+|...+|+.|++....|.+ +|+.+-.+. .++ .+.+.+|.+.. +.++.-+....+...+..
T Consensus 2 i~iY~~~~C~~crkA~~~L~~-------~gi~~~~~di~~~~~s~~el~~~l~~~-------~~g~~~lin~~~~~~k~l 67 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEE-------NQIDYTEKNIVSNSMTVDELKSILRLT-------EEGATEIISTRSKTFQDL 67 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------cCCCeEEEEeeCCcCCHHHHHHHHHHc-------CCCHHHHHhcCcHHHHhC
Confidence 345668999999987655544 455444443 343 66777777642 233333444556666666
Q ss_pred cC
Q psy17178 161 GV 162 (384)
Q Consensus 161 gv 162 (384)
+.
T Consensus 68 ~~ 69 (131)
T PRK12559 68 NI 69 (131)
T ss_pred CC
Confidence 65
No 436
>KOG4277|consensus
Probab=45.43 E-value=8.5 Score=35.69 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=25.5
Q ss_pred eEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCc
Q psy17178 82 YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINT 115 (384)
Q Consensus 82 ~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v 115 (384)
--+|.|| +.||..|.+--|-..+.--++++.|.
T Consensus 45 iW~VdFY-APWC~HCKkLePiWdeVG~elkdig~ 77 (468)
T KOG4277|consen 45 IWFVDFY-APWCAHCKKLEPIWDEVGHELKDIGL 77 (468)
T ss_pred eEEEEee-chhhhhcccccchhHHhCcchhhcCC
Confidence 4577898 99999999988877776666666554
No 437
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=45.42 E-value=24 Score=27.66 Aligned_cols=42 Identities=14% Similarity=0.290 Sum_probs=25.9
Q ss_pred EEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeC--C--CHHhHHHHhcCc
Q psy17178 277 FYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV--D--SHFTHLAWVNTP 325 (384)
Q Consensus 277 F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~--d--~~~~~~~~~~~~ 325 (384)
+|...+|+.|+.....|++ .|+.+--+.+ + +.+.+.++.+..
T Consensus 3 iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~el~~~~~~~ 48 (111)
T cd03036 3 FYEYPKCSTCRKAKKWLDE-------HGVDYTAIDIVEEPPSKEELKKWLEKS 48 (111)
T ss_pred EEECCCCHHHHHHHHHHHH-------cCCceEEecccCCcccHHHHHHHHHHc
Confidence 4458899999877665554 3555555543 3 345666666654
No 438
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=45.42 E-value=56 Score=25.61 Aligned_cols=47 Identities=15% Similarity=0.237 Sum_probs=34.4
Q ss_pred eeeeccccCC-CeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeC
Q psy17178 261 KEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV 312 (384)
Q Consensus 261 ~~~~l~d~~G-k~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~ 312 (384)
+.-.+++|.+ ..-++-|+ .|..|+ -..+....+++.+.++.+|-++.
T Consensus 26 r~g~F~~y~~~~~elvgf~---~CgGCp--g~~~~~~~~~l~~~~~d~IHlss 73 (107)
T PF08821_consen 26 RKGAFARYDDEDVELVGFF---TCGGCP--GRKLVRRIKKLKKNGADVIHLSS 73 (107)
T ss_pred ccCccccCCCCCeEEEEEe---eCCCCC--hhHHHHHHHHHHHCCCCEEEEcC
Confidence 3445667765 56677876 466677 66677777888888999998875
No 439
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=45.23 E-value=45 Score=30.80 Aligned_cols=41 Identities=10% Similarity=0.105 Sum_probs=32.3
Q ss_pred CCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC
Q psy17178 270 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD 313 (384)
Q Consensus 270 Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d 313 (384)
+-+|||.|| -..++.|......|..|..+|. .++|+-|...
T Consensus 146 ~~~VVVHiY-~~~~~~C~~mn~~L~~LA~kyp--~vKFvkI~a~ 186 (265)
T PF02114_consen 146 STWVVVHIY-EPGFPRCEIMNSCLECLARKYP--EVKFVKIRAS 186 (265)
T ss_dssp T-EEEEEEE--TTSCCHHHHHHHHHHHHHH-T--TSEEEEEEEC
T ss_pred CcEEEEEEE-eCCCchHHHHHHHHHHHHHhCC--ceEEEEEehh
Confidence 457888888 8889999999999999999985 5888888654
No 440
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=44.39 E-value=46 Score=23.30 Aligned_cols=53 Identities=13% Similarity=0.067 Sum_probs=28.3
Q ss_pred eeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCc
Q psy17178 88 YPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLT 153 (384)
Q Consensus 88 ~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~ 153 (384)
|...+||.|.+-.-.|.+. +..++.+-|+... ...++.+. +. .-..|++.+.+
T Consensus 4 y~~~~~p~~~rv~~~L~~~-----gl~~e~~~v~~~~--~~~~~~~~-----np-~~~vP~L~~~~ 56 (71)
T cd03060 4 YSFRRCPYAMRARMALLLA-----GITVELREVELKN--KPAEMLAA-----SP-KGTVPVLVLGN 56 (71)
T ss_pred EecCCCcHHHHHHHHHHHc-----CCCcEEEEeCCCC--CCHHHHHH-----CC-CCCCCEEEECC
Confidence 4467899998876655542 2234555554432 22334331 11 23688887653
No 441
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=43.76 E-value=96 Score=25.28 Aligned_cols=68 Identities=7% Similarity=0.048 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhCCcEEE--EEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEe
Q psy17178 291 LAFNDRLEEFHQINTEVV--AASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLEC 368 (384)
Q Consensus 291 ~~l~~l~~~~~~~~v~vv--~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId 368 (384)
..|.++..+.++.|..++ |+--++-....+.+..+.+. +-+..+..|| .+.++|++ ..+|+.+++.
T Consensus 12 ~~Lk~l~~~a~~~g~~~VlRG~~~~~~~~T~~~i~~L~~~----~~~~~v~IdP--~lF~~f~I------~~VPa~V~~~ 79 (130)
T TIGR02742 12 PLLKQLLDQAEALGAPLVIRGLLDNGFKATATRIQSLIKD----GGKSGVQIDP--QWFKQFDI------TAVPAFVVVK 79 (130)
T ss_pred HHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHhc----CCCCcEEECh--HHHhhcCc------eEcCEEEEEC
Confidence 346666666665565433 33334444444444444222 2224454554 67899999 7888877776
Q ss_pred CC
Q psy17178 369 YK 370 (384)
Q Consensus 369 ~~ 370 (384)
.+
T Consensus 80 ~~ 81 (130)
T TIGR02742 80 DG 81 (130)
T ss_pred CC
Confidence 54
No 442
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=43.61 E-value=1.3e+02 Score=26.68 Aligned_cols=71 Identities=6% Similarity=-0.007 Sum_probs=46.9
Q ss_pred hHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEE
Q psy17178 287 PTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCL 366 (384)
Q Consensus 287 ~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~l 366 (384)
..++....+.+... ..+++|-+.-+..+..+ .++-+++.|..+.+.+.||+ .++|+ +
T Consensus 131 ~~Qv~wak~~~~~~--~~~k~ILv~Gs~~~~~~-------------~l~~~vYfdQ~G~Lt~rF~I------~~VPA--v 187 (209)
T PRK13738 131 PAQVAWMKRQTPPT--LESKIILVQGSIPEMSK-------------ALDSRIYFDQNGVLCQRFGI------DQVPA--R 187 (209)
T ss_pred HHHHHHHHHhhhcc--CCceEEEECCCHHHHHH-------------HhCCceEEcCcchHHHhcCC------eeece--E
Confidence 35665555433322 25778888765444332 34556888999999999999 68885 5
Q ss_pred Ee--CCceEEEEEecC
Q psy17178 367 EC--YKMVIVYWFERG 380 (384)
Q Consensus 367 Id--~~G~i~~~~~~~ 380 (384)
|- ++|+...+.+..
T Consensus 188 V~~~q~G~~l~I~E~~ 203 (209)
T PRK13738 188 VSAVPGGRFLKVEFIP 203 (209)
T ss_pred EEEcCCCCEEEEEEEC
Confidence 55 888887766543
No 443
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=43.02 E-value=31 Score=26.55 Aligned_cols=42 Identities=5% Similarity=-0.077 Sum_probs=25.5
Q ss_pred EEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeC--C--CHHhHHHHhcCc
Q psy17178 277 FYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV--D--SHFTHLAWVNTP 325 (384)
Q Consensus 277 F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~--d--~~~~~~~~~~~~ 325 (384)
+|...+|+.|+.....|++ .|+.+-.+.+ + +.+.+.++....
T Consensus 3 iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~~l~~~~~~~ 48 (105)
T cd02977 3 IYGNPNCSTSRKALAWLEE-------HGIEYEFIDYLKEPPTKEELKELLAKL 48 (105)
T ss_pred EEECCCCHHHHHHHHHHHH-------cCCCcEEEeeccCCCCHHHHHHHHHhc
Confidence 4458899999877655544 4554444544 2 345666666654
No 444
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=42.77 E-value=41 Score=27.44 Aligned_cols=63 Identities=8% Similarity=0.071 Sum_probs=36.8
Q ss_pred EEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeC--C--CHHhHHHHhcCccccCCCCCcceeEEecCchHHHHHhC
Q psy17178 276 FFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV--D--SHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYG 351 (384)
Q Consensus 276 ~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~--d--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 351 (384)
.+|...+|+.|+..... +.+.|+.+-.+.+ + +.+.+.+|++.. +..+.-+....++..+..+
T Consensus 3 ~iY~~~~C~~crkA~~~-------L~~~~i~~~~~d~~~~~~s~~eL~~~l~~~-------~~~~~~lin~~~~~~k~L~ 68 (132)
T PRK13344 3 KIYTISSCTSCKKAKTW-------LNAHQLSYKEQNLGKEPLTKEEILAILTKT-------ENGIESIVSSKNRYAKALD 68 (132)
T ss_pred EEEeCCCCHHHHHHHHH-------HHHcCCCeEEEECCCCCCCHHHHHHHHHHh-------CCCHHHhhccCcHHHHhCC
Confidence 34557889999875433 3345665555554 3 356788888765 4444444445555555555
Q ss_pred c
Q psy17178 352 V 352 (384)
Q Consensus 352 v 352 (384)
.
T Consensus 69 ~ 69 (132)
T PRK13344 69 C 69 (132)
T ss_pred c
Confidence 3
No 445
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=42.09 E-value=72 Score=26.01 Aligned_cols=46 Identities=15% Similarity=0.128 Sum_probs=35.1
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHH
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHF 316 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~ 316 (384)
..|++||-|. -.|-|.|...=.-|.+..++.++- ..++.+.++...
T Consensus 19 ~drvvViRFG-~d~d~~Cm~mDeiL~~~a~~v~~~-a~IY~vDi~~Vp 64 (133)
T PF02966_consen 19 EDRVVVIRFG-RDWDPVCMQMDEILYKIAEKVKNF-AVIYLVDIDEVP 64 (133)
T ss_dssp SSSEEEEEEE--TTSHHHHHHHHHHHHHHHHHTTT-EEEEEEETTTTH
T ss_pred CceEEEEEeC-CCCCccHHHHHHHHHHHHHHhhcc-eEEEEEEcccch
Confidence 4699999999 788999998888888888877532 456677777543
No 446
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=41.76 E-value=67 Score=25.20 Aligned_cols=47 Identities=15% Similarity=0.237 Sum_probs=32.5
Q ss_pred ceEEccccCC-CeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeC
Q psy17178 71 KEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV 122 (384)
Q Consensus 71 ~~~~l~~~~g-k~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~ 122 (384)
+.-.+++|.+ ..-++-|+ .|..|+ -..+....+++.+.|+++|-++.
T Consensus 26 r~g~F~~y~~~~~elvgf~---~CgGCp--g~~~~~~~~~l~~~~~d~IHlss 73 (107)
T PF08821_consen 26 RKGAFARYDDEDVELVGFF---TCGGCP--GRKLVRRIKKLKKNGADVIHLSS 73 (107)
T ss_pred ccCccccCCCCCeEEEEEe---eCCCCC--hhHHHHHHHHHHHCCCCEEEEcC
Confidence 4455677765 46788888 456565 55566666777778999888875
No 447
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=39.98 E-value=35 Score=35.52 Aligned_cols=73 Identities=14% Similarity=0.127 Sum_probs=41.0
Q ss_pred cccCCCeEEEEEEeCCCCcCchHhH------HHHHHHHHHHHhCCcEEEEEeCCCH---HhHHHHhcCccccCCCCCcce
Q psy17178 266 SDYYGKYLVFFFYPLDFTFVCPTEI------LAFNDRLEEFHQINTEVVAASVDSH---FTHLAWVNTPRKEGGLGKLKI 336 (384)
Q Consensus 266 ~d~~Gk~vvl~F~~a~~c~~C~~~~------~~l~~l~~~~~~~~v~vv~Is~d~~---~~~~~~~~~~~~~~~~~~~~~ 336 (384)
+.-.+|+++|... .+||.=|..+. |++.++.+ -.+|.|-+|-. +.-+-|++-.+.-.+.++++.
T Consensus 39 A~~edkPIflSIG-ys~CHWChVM~~ESf~d~eiA~~lN------~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWPL 111 (667)
T COG1331 39 AKEEDKPILLSIG-YSTCHWCHVMAHESFEDPEIAAILN------ENFVPVKVDREERPDVDSLYMNASQAITGQGGWPL 111 (667)
T ss_pred HHHhCCCEEEEec-cccccchHHHhhhcCCCHHHHHHHH------hCceeeeEChhhccCHHHHHHHHHHHhccCCCCce
Confidence 3346899999999 77898897643 33333333 23677777743 233334433222223335566
Q ss_pred eEEecCchH
Q psy17178 337 PLLSDLTHK 345 (384)
Q Consensus 337 ~~~~D~~~~ 345 (384)
.++.-|+++
T Consensus 112 tVfLTPd~k 120 (667)
T COG1331 112 TVFLTPDGK 120 (667)
T ss_pred eEEECCCCc
Confidence 565555543
No 448
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=39.50 E-value=1.1e+02 Score=24.03 Aligned_cols=67 Identities=9% Similarity=0.062 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhCCcEEE--EEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeC
Q psy17178 292 AFNDRLEEFHQINTEVV--AASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECY 369 (384)
Q Consensus 292 ~l~~l~~~~~~~~v~vv--~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~ 369 (384)
.|.++.++..+.|+.++ |+--++-....+++.++.... ...-.+..|| .+.++|++ ..+|+.++...
T Consensus 12 ~L~~l~~~a~~~~~~~V~RG~~~g~~~~t~~~~~~l~~~~---~~~~~v~IdP--~~F~~y~I------~~VPa~V~~~~ 80 (113)
T PF09673_consen 12 SLRNLLKQAERAGVVVVFRGFPDGSFKPTAKAIQELLRKD---DPCPGVQIDP--RLFRQYNI------TAVPAFVVVKD 80 (113)
T ss_pred HHHHHHHHHHhCCcEEEEECCCCCCHHHHHHHHHHHhhcc---CCCcceeECh--hHHhhCCc------eEcCEEEEEcC
Confidence 46666666666666554 344444444444444443221 2223455564 67899999 68888777765
No 449
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=37.24 E-value=2.5e+02 Score=26.02 Aligned_cols=77 Identities=14% Similarity=0.116 Sum_probs=48.4
Q ss_pred CCCCCceeeeEEcCcceeeeccccCC-CeEEEEEEeCCCCcCchHh--HHHHHHHHHHHH--hCCcEEEEEeCCCHHhHH
Q psy17178 245 KPAPFWQGTAVVDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTE--ILAFNDRLEEFH--QINTEVVAASVDSHFTHL 319 (384)
Q Consensus 245 ~~~P~f~l~~l~d~~g~~~~l~d~~G-k~vvl~F~~a~~c~~C~~~--~~~l~~l~~~~~--~~~v~vv~Is~d~~~~~~ 319 (384)
+.+|-|.+. |++|+++-.++-.| |.+-+ |. ++.+ -..|+++...-. ..+++|+.|+.|....++
T Consensus 80 ~~VPVFtIt---n~~G~pvl~s~~~~~~~~gv-f~-------s~qedA~afL~~lk~~~p~l~~~~kV~pvsL~~vYkl~ 148 (270)
T TIGR00995 80 AGTSVFTVS---NAQNEFVLASDNDGEKSIGL-LC-------FRQEDAEAFLAQLRKRKPEVGSQAKVVPITLDQVYKLK 148 (270)
T ss_pred cCCceEEEE---cCCCCeEEEECCCCCceEEE-EE-------CCHHHHHHHHHHHHhhCccccCCceEEEEEHHHHHHHh
Confidence 568888887 88999988876655 44443 33 1232 223334333322 246899999998665442
Q ss_pred HHhcCccccCCCCCcceeEEecCc
Q psy17178 320 AWVNTPRKEGGLGKLKIPLLSDLT 343 (384)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~D~~ 343 (384)
.+ ++.|.++.|+.
T Consensus 149 ---~e--------~l~F~fiP~~~ 161 (270)
T TIGR00995 149 ---VE--------GIGFRFLPDPA 161 (270)
T ss_pred ---hc--------CccEEEeCCHH
Confidence 21 68999998865
No 450
>PRK12559 transcriptional regulator Spx; Provisional
Probab=36.62 E-value=59 Score=26.44 Aligned_cols=63 Identities=6% Similarity=0.034 Sum_probs=35.8
Q ss_pred EEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeC--C--CHHhHHHHhcCccccCCCCCcceeEEecCchHHHHHhC
Q psy17178 276 FFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV--D--SHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYG 351 (384)
Q Consensus 276 ~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~--d--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 351 (384)
.+|...+|+.|+.....|. +.|+.+-.+.+ + +.+.+..|++.. +.++.-+....+...+..+
T Consensus 3 ~iY~~~~C~~crkA~~~L~-------~~gi~~~~~di~~~~~s~~el~~~l~~~-------~~g~~~lin~~~~~~k~l~ 68 (131)
T PRK12559 3 VLYTTASCASCRKAKAWLE-------ENQIDYTEKNIVSNSMTVDELKSILRLT-------EEGATEIISTRSKTFQDLN 68 (131)
T ss_pred EEEeCCCChHHHHHHHHHH-------HcCCCeEEEEeeCCcCCHHHHHHHHHHc-------CCCHHHHHhcCcHHHHhCC
Confidence 3555889999988654443 34555544443 3 457778888764 2333333344455555555
Q ss_pred c
Q psy17178 352 V 352 (384)
Q Consensus 352 v 352 (384)
.
T Consensus 69 ~ 69 (131)
T PRK12559 69 I 69 (131)
T ss_pred C
Confidence 4
No 451
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=36.52 E-value=1.4e+02 Score=30.55 Aligned_cols=102 Identities=17% Similarity=0.097 Sum_probs=61.0
Q ss_pred CCCCCCCceeeeEEcCcceeeeccccCC-CeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHH
Q psy17178 243 VSKPAPFWQGTAVVDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW 321 (384)
Q Consensus 243 ~g~~~P~f~l~~l~d~~g~~~~l~d~~G-k~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~ 321 (384)
+|..+|+..+. .+|+..++.|+.| +++||.|- .. ... ....+.. .....++.++.+..+...
T Consensus 429 pG~r~p~~~~~----~~~~~~~l~dl~g~~f~ll~~~-~~----~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~----- 491 (547)
T PRK08132 429 PGAPAPDAPVR----ADGEPGWLLDLLGGGFTLLLFG-DD----AAA--AALLQAL-AAAALPVRVVAVVPAGAA----- 491 (547)
T ss_pred CCCCCCCCccc----CCCCceEHHHhcCCCEEEEEec-CC----chh--hhhhhhh-hccCCceEEEEEecCccc-----
Confidence 68888888764 2566788888766 57777764 21 111 1111111 112234555655543210
Q ss_pred hcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178 322 VNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER 379 (384)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~ 379 (384)
..+...+.|.++.+.+.|++ .....+||-|||-|.++...
T Consensus 492 -----------~~~~~~~~d~~~~~~~~~~~-------~~~~~~LvRPDg~va~~~~~ 531 (547)
T PRK08132 492 -----------QAAAGVLEDADGLAAERYDA-------RPGTVYLIRPDQHVAARWRT 531 (547)
T ss_pred -----------ccCcccccCcccHHHHHhCC-------CCCeEEEECCCceEEEEecC
Confidence 11223567889999999997 33457999999999987654
No 452
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=36.10 E-value=43 Score=27.27 Aligned_cols=64 Identities=9% Similarity=0.083 Sum_probs=38.1
Q ss_pred EEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeC--CC--HHhHHhhccCccccCCCCccceeEEeeCcchhHHhh
Q psy17178 85 FFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV--DS--HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDY 160 (384)
Q Consensus 85 l~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~--d~--~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~y 160 (384)
+.+|...+|+.|++-...|. ++|+.+-.+.. ++ .+.+..|.+.. +.++.-+....+...+..
T Consensus 2 i~iY~~~~C~~crkA~~~L~-------~~~i~~~~~d~~~~~~s~~eL~~~l~~~-------~~~~~~lin~~~~~~k~L 67 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLN-------AHQLSYKEQNLGKEPLTKEEILAILTKT-------ENGIESIVSSKNRYAKAL 67 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHH-------HcCCCeEEEECCCCCCCHHHHHHHHHHh-------CCCHHHhhccCcHHHHhC
Confidence 34555889999998654444 35665555543 33 56777787743 334444444556666655
Q ss_pred cC
Q psy17178 161 GV 162 (384)
Q Consensus 161 gv 162 (384)
+.
T Consensus 68 ~~ 69 (132)
T PRK13344 68 DC 69 (132)
T ss_pred Cc
Confidence 54
No 453
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=35.70 E-value=39 Score=24.73 Aligned_cols=56 Identities=13% Similarity=0.155 Sum_probs=36.1
Q ss_pred EEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCc
Q psy17178 85 FFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLT 153 (384)
Q Consensus 85 l~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~ 153 (384)
|.||....|+-|..--..|.++.. +.++++-.|..++.+. |.+.+ +...|++.-.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~---~~~~~l~~vDI~~d~~---l~~~Y-------~~~IPVl~~~~ 57 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAA---EFPFELEEVDIDEDPE---LFEKY-------GYRIPVLHIDG 57 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCT---TSTCEEEEEETTTTHH---HHHHS-------CTSTSEEEETT
T ss_pred EEEEcCCCCChHHHHHHHHHHHHh---hcCceEEEEECCCCHH---HHHHh-------cCCCCEEEEcC
Confidence 345558889999977777776543 3468888888874332 44432 66788886544
No 454
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=35.67 E-value=1.1e+02 Score=25.04 Aligned_cols=33 Identities=15% Similarity=0.064 Sum_probs=21.3
Q ss_pred CcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178 152 LTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL 196 (384)
Q Consensus 152 ~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~ 196 (384)
.+.+++..||| ++++ ++++=++|++.+...|..
T Consensus 79 ~~~~LA~~fgV--------~siP----TLl~FkdGk~v~~i~G~~ 111 (132)
T PRK11509 79 QSEAIGDRFGV--------FRFP----ATLVFTGGNYRGVLNGIH 111 (132)
T ss_pred CCHHHHHHcCC--------ccCC----EEEEEECCEEEEEEeCcC
Confidence 34567788888 3333 456667888876666654
No 455
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=35.45 E-value=81 Score=29.41 Aligned_cols=29 Identities=7% Similarity=0.128 Sum_probs=20.5
Q ss_pred CCCceeeeEEcCcceeeecccc-CCCeEEEEEE
Q psy17178 247 APFWQGTAVVDGQLKEIKLSDY-YGKYLVFFFY 278 (384)
Q Consensus 247 ~P~f~l~~l~d~~g~~~~l~d~-~Gk~vvl~F~ 278 (384)
+-.++|. +.+|+++|.+++ .|.-+++++-
T Consensus 330 AETIkLv---~~dG~pvSV~eLk~GD~vlv~~e 359 (376)
T COG1465 330 AETIKLV---NPDGEPVSVAELKPGDEVLVYLE 359 (376)
T ss_pred ceeEEEE---cCCCcEeeeEecCCCCEEEEEeh
Confidence 3344444 779999999999 4666777653
No 456
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=35.45 E-value=3e+02 Score=24.42 Aligned_cols=52 Identities=8% Similarity=0.127 Sum_probs=35.0
Q ss_pred hHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchhHHhhcCc
Q psy17178 97 PTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVY 163 (384)
Q Consensus 97 ~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~ 163 (384)
..++.-.++.+... ..+.+|-+.-+..+..+++ .-+++.|..|.+++.||+.
T Consensus 131 ~~Qv~wak~~~~~~--~~~k~ILv~Gs~~~~~~~l-------------~~~vYfdQ~G~Lt~rF~I~ 182 (209)
T PRK13738 131 PAQVAWMKRQTPPT--LESKIILVQGSIPEMSKAL-------------DSRIYFDQNGVLCQRFGID 182 (209)
T ss_pred HHHHHHHHHhhhcc--CCceEEEECCCHHHHHHHh-------------CCceEEcCcchHHHhcCCe
Confidence 56676665543322 2577887776665544433 4568999999999999993
No 457
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=34.96 E-value=63 Score=23.57 Aligned_cols=54 Identities=13% Similarity=0.162 Sum_probs=34.7
Q ss_pred EEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCc
Q psy17178 277 FYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLT 343 (384)
Q Consensus 277 F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 343 (384)
|+...-|+.|...-..|.++.. +.++.+-.|.+++.+. +.+++ +...|++.-.+
T Consensus 4 l~~k~~C~LC~~a~~~L~~~~~---~~~~~l~~vDI~~d~~---l~~~Y-------~~~IPVl~~~~ 57 (81)
T PF05768_consen 4 LYTKPGCHLCDEAKEILEEVAA---EFPFELEEVDIDEDPE---LFEKY-------GYRIPVLHIDG 57 (81)
T ss_dssp EEE-SSSHHHHHHHHHHHHCCT---TSTCEEEEEETTTTHH---HHHHS-------CTSTSEEEETT
T ss_pred EEcCCCCChHHHHHHHHHHHHh---hcCceEEEEECCCCHH---HHHHh-------cCCCCEEEEcC
Confidence 3447778899877666666543 3458899999885433 44554 67777776433
No 458
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=34.66 E-value=88 Score=32.21 Aligned_cols=29 Identities=17% Similarity=0.018 Sum_probs=20.8
Q ss_pred CeEEEEEeeCCCCCCchHHHHHHHHhHHH
Q psy17178 81 KYLVFFFYPLDFTFVCPTEILAFNDRLEE 109 (384)
Q Consensus 81 k~vvl~f~~~~~cp~C~~~~~~l~~~~~~ 109 (384)
+++-|-.|-+.+||+|+.-...++++..+
T Consensus 476 ~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~ 504 (555)
T TIGR03143 476 KPVNIKIGVSLSCTLCPDVVLAAQRIASL 504 (555)
T ss_pred CCeEEEEEECCCCCCcHHHHHHHHHHHHh
Confidence 56655555599999999777777666554
No 459
>KOG1752|consensus
Probab=33.78 E-value=71 Score=24.90 Aligned_cols=35 Identities=14% Similarity=0.191 Sum_probs=19.7
Q ss_pred CeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178 81 KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124 (384)
Q Consensus 81 k~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~ 124 (384)
++ ||.|- .+|||+|.. +. ++..+ .++....|-.|.
T Consensus 14 ~~-VVifS-Ks~C~~c~~-~k---~ll~~---~~v~~~vvELD~ 48 (104)
T KOG1752|consen 14 NP-VVIFS-KSSCPYCHR-AK---ELLSD---LGVNPKVVELDE 48 (104)
T ss_pred CC-EEEEE-CCcCchHHH-HH---HHHHh---CCCCCEEEEccC
Confidence 44 44566 699999998 33 33333 355444444443
No 460
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=32.36 E-value=41 Score=26.16 Aligned_cols=42 Identities=10% Similarity=0.018 Sum_probs=26.8
Q ss_pred EEeeCCCCCCchHHHHHHHHhHHHHHhCCcE--EEEEeCCC--HHhHHhhccC
Q psy17178 86 FFYPLDFTFVCPTEILAFNDRLEEFHQINTE--VVAASVDS--HFTHLAWVNT 134 (384)
Q Consensus 86 ~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~--vi~Vs~d~--~~~~~~~~~~ 134 (384)
.+|...+|+.|++....|.+ +|+. ++-+..++ .+.+++|.+.
T Consensus 2 ~iy~~~~C~~crka~~~L~~-------~~i~~~~~di~~~p~s~~eL~~~l~~ 47 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEA-------RGVAYTFHDYRKDGLDAATLERWLAK 47 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------cCCCeEEEecccCCCCHHHHHHHHHH
Confidence 35558899999987766655 3544 44444443 5677777763
No 461
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=32.22 E-value=1.1e+02 Score=28.32 Aligned_cols=84 Identities=18% Similarity=0.224 Sum_probs=41.3
Q ss_pred CCCCCceeeeEEcCcceeeeccccC--CCeEEEEEEeCCCCcCchHhHHHH-HHHHHHHH--hCCcEEEEEeCCCHHhHH
Q psy17178 245 KPAPFWQGTAVVDGQLKEIKLSDYY--GKYLVFFFYPLDFTFVCPTEILAF-NDRLEEFH--QINTEVVAASVDSHFTHL 319 (384)
Q Consensus 245 ~~~P~f~l~~l~d~~g~~~~l~d~~--Gk~vvl~F~~a~~c~~C~~~~~~l-~~l~~~~~--~~~v~vv~Is~d~~~~~~ 319 (384)
+.+|-|.+. |.+|.++-.++-. ++.+.+.|+ |+.+...+ +++..... ..+++|+.|+.|....+.
T Consensus 73 ~~VPVF~it---n~~G~p~l~~~~~~~~~~v~~~F~-------s~~dA~~~L~~lk~~~p~~~~~~kV~pvsL~~vY~l~ 142 (274)
T PF04278_consen 73 AGVPVFTIT---NSQGEPVLVSGPDQGGKSVGLFFF-------SQQDAEAFLAQLKKSNPELASGAKVVPVSLGKVYQLA 142 (274)
T ss_dssp TTSEEEEEE----TT--B-----TTS--SEEEEEES--------HHHHHHHHHHHHH-SSHHHTT-EEEEEEHHHHHHHH
T ss_pred cCceEEEEE---CCCCCEEEeccCCCCCceEEEEEe-------cHHHHHHHHHHHhhhCccccCceEEEEecHHHHHHHH
Confidence 568888877 8899998777665 566555554 45554443 33333222 367999999998665443
Q ss_pred HHhcCccccCCCCCcceeEEecCc
Q psy17178 320 AWVNTPRKEGGLGKLKIPLLSDLT 343 (384)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~D~~ 343 (384)
.-.+. +. .++.|.++.|+.
T Consensus 143 ~~~~~-k~----~~~~F~~vP~~~ 161 (274)
T PF04278_consen 143 QENKK-KP----EGLQFRFVPDPK 161 (274)
T ss_dssp HHTTT--T----T-EEEEEE--HH
T ss_pred HHhhc-CC----cCceEEEcCCHH
Confidence 31111 11 278899998865
No 462
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=31.95 E-value=78 Score=31.25 Aligned_cols=36 Identities=11% Similarity=0.092 Sum_probs=22.1
Q ss_pred eCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHH
Q psy17178 279 PLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW 321 (384)
Q Consensus 279 ~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~ 321 (384)
..+|||.|...-..|.+ .|+.+--|.+|......++
T Consensus 8 s~~~Cp~C~~aK~~L~~-------~gi~~~~idi~~~~~~~~~ 43 (410)
T PRK12759 8 TKTNCPFCDLAKSWFGA-------NDIPFTQISLDDDVKRAEF 43 (410)
T ss_pred eCCCCHHHHHHHHHHHH-------CCCCeEEEECCCChhHHHH
Confidence 38999999765544443 5676666776643333333
No 463
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=30.95 E-value=3.3e+02 Score=24.06 Aligned_cols=86 Identities=16% Similarity=0.179 Sum_probs=47.4
Q ss_pred CccEEE-eeecCccc-------eEEccccCC-CeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhH
Q psy17178 58 PFWQGT-AVVDGQLK-------EIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH 128 (384)
Q Consensus 58 P~f~l~-~~~~~~g~-------~~~l~~~~g-k~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~ 128 (384)
|.++++ |+.|.+|+ .++.=|+-. ...+|+|= +.. ..++.-.++.+... .++.+|-+.-+..+..
T Consensus 90 Ps~tl~~DI~d~~G~vi~~kGt~vNPLd~v~~~~~LvfiD-g~D----~~Qv~wa~~~~~~~--~~~k~IL~~Gs~~~l~ 162 (202)
T TIGR02743 90 PSITLAQDILDEKGQVLAKKGTRINPLDRVSLSKTLLFFD-ADD----PEQLAWAQQQLPSC--PNVKWILTGGSVNELE 162 (202)
T ss_pred CcEEecCcccCCCCCEEECCCCEECCcccccCCceEEEEe-CCC----HHHHHHHHHhcccC--CCeEEEEeCCCHHHHH
Confidence 556654 34444544 444333322 23344443 442 46666665543332 1467777765544433
Q ss_pred HhhccCccccCCCCccceeEEeeCcchhHHhhcCc
Q psy17178 129 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVY 163 (384)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~ 163 (384)
++ +.-+++.|..|.+++.||+.
T Consensus 163 ~~-------------l~~~vYfdQ~g~Lt~rF~I~ 184 (202)
T TIGR02743 163 KR-------------LDSRIYFDQHGKLTQKFGIK 184 (202)
T ss_pred HH-------------hCCceEEcCCchHhhccCce
Confidence 33 34568999999999999993
No 464
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=30.64 E-value=1.2e+02 Score=26.59 Aligned_cols=47 Identities=11% Similarity=0.164 Sum_probs=33.1
Q ss_pred EEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEe-CCCHHhHHHHhcCc
Q psy17178 273 LVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAAS-VDSHFTHLAWVNTP 325 (384)
Q Consensus 273 vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is-~d~~~~~~~~~~~~ 325 (384)
.+..|. ...|+.|...+..+.. .+..+.++.|. ..+.+.++.|+..+
T Consensus 111 rlalFv-kd~C~~C~~~~~~l~a-----~~~~~Diylvgs~~dD~~Ir~WA~~~ 158 (200)
T TIGR03759 111 RLALFV-KDDCVACDARVQRLLA-----DNAPLDLYLVGSQGDDERIRQWANRH 158 (200)
T ss_pred eEEEEe-CCCChHHHHHHHHHhc-----CCCceeEEEecCCCCHHHHHHHHHHc
Confidence 355666 5889999877666633 23567777775 45678899999876
No 465
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=30.19 E-value=1.5e+02 Score=27.38 Aligned_cols=41 Identities=10% Similarity=0.105 Sum_probs=30.7
Q ss_pred CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178 80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD 123 (384)
Q Consensus 80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d 123 (384)
+.+|||.|| -..++.|..--..|..+..+|. .+.++-|...
T Consensus 146 ~~~VVVHiY-~~~~~~C~~mn~~L~~LA~kyp--~vKFvkI~a~ 186 (265)
T PF02114_consen 146 STWVVVHIY-EPGFPRCEIMNSCLECLARKYP--EVKFVKIRAS 186 (265)
T ss_dssp T-EEEEEEE--TTSCCHHHHHHHHHHHHHH-T--TSEEEEEEEC
T ss_pred CcEEEEEEE-eCCCchHHHHHHHHHHHHHhCC--ceEEEEEehh
Confidence 347888888 8889999999999999999885 4677766554
No 466
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=28.60 E-value=2.2e+02 Score=25.09 Aligned_cols=68 Identities=10% Similarity=0.079 Sum_probs=42.8
Q ss_pred hHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEE
Q psy17178 287 PTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCL 366 (384)
Q Consensus 287 ~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~l 366 (384)
..++....+.+... ..+++|-++-+ +.++.+ .++-+++.|.++.+.+.||+ .++|+ +
T Consensus 133 ~~Qv~wa~~~~~~~--~~~k~IL~~Gs-~~~l~~------------~l~~~vYfdQ~g~Lt~rF~I------~~VPa--v 189 (202)
T TIGR02743 133 PEQLAWAQQQLPSC--PNVKWILTGGS-VNELEK------------RLDSRIYFDQHGKLTQKFGI------KHVPA--R 189 (202)
T ss_pred HHHHHHHHHhcccC--CCeEEEEeCCC-HHHHHH------------HhCCceEEcCCchHhhccCc------eeece--E
Confidence 35555555433322 24677777644 333322 34566888999999999999 68885 4
Q ss_pred EeCCceEEEEE
Q psy17178 367 ECYKMVIVYWF 377 (384)
Q Consensus 367 Id~~G~i~~~~ 377 (384)
|-++|+...+.
T Consensus 190 V~q~g~~l~I~ 200 (202)
T TIGR02743 190 VSQEGLRLRIQ 200 (202)
T ss_pred EEecCCEEEEE
Confidence 55778776543
No 467
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=28.44 E-value=81 Score=31.16 Aligned_cols=33 Identities=15% Similarity=0.107 Sum_probs=20.8
Q ss_pred EEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178 84 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124 (384)
Q Consensus 84 vl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~ 124 (384)
|+.|- .+|||.|.+.-..|.+ .|+..-.|.+|.
T Consensus 4 V~vys-~~~Cp~C~~aK~~L~~-------~gi~~~~idi~~ 36 (410)
T PRK12759 4 VRIYT-KTNCPFCDLAKSWFGA-------NDIPFTQISLDD 36 (410)
T ss_pred EEEEe-CCCCHHHHHHHHHHHH-------CCCCeEEEECCC
Confidence 33444 8999999976555444 466555555553
No 468
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=28.38 E-value=3.4e+02 Score=27.69 Aligned_cols=104 Identities=11% Similarity=-0.093 Sum_probs=61.9
Q ss_pred CCCCCCCCceeeeEEcCcceeeeccccCC-CeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHH
Q psy17178 242 FVSKPAPFWQGTAVVDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA 320 (384)
Q Consensus 242 ~~g~~~P~f~l~~l~d~~g~~~~l~d~~G-k~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~ 320 (384)
.+|..+|+..+. +.+|....+.++.| .++||.|. . .+..... +... +.....+..++.+.......
T Consensus 412 ~~G~~~p~~~~~---~~~~~~~~~d~~~~~~~~ll~~~-~--~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~--- 478 (538)
T PRK06183 412 PVGTLFPQPRVE---LGGGDRGLLDDVLGPGFAVLGWG-C--DPLAGLS-DEQR---ARWRALGARFVQVVPAVQAH--- 478 (538)
T ss_pred CcccCcCCCeeE---cCCCCcccchhccCCceEEEEec-C--CchhcCC-HHHH---HHHHHcCCeEEEEecccccc---
Confidence 468889998775 33444445666766 58888774 1 1211111 1111 22344567777775432110
Q ss_pred HhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEE
Q psy17178 321 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWF 377 (384)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~ 377 (384)
.-..+.+.|.++.+.+.|+. +-...+||-||+-|-...
T Consensus 479 ------------~~~~~~~~d~~g~~~~~~~~-------~~~~~~lvRPD~~v~~~~ 516 (538)
T PRK06183 479 ------------TAQDDHDSDVDGALRAWLAR-------HGASAVLLRPDRYVAAAA 516 (538)
T ss_pred ------------cCCCceeecCCchHHHHHHh-------CCCEEEEECCCEEEEEee
Confidence 11234678999999999986 234569999999988653
No 469
>KOG0913|consensus
Probab=27.95 E-value=16 Score=32.86 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=30.3
Q ss_pred CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEE--EEEeCCC
Q psy17178 79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEV--VAASVDS 124 (384)
Q Consensus 79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~v--i~Vs~d~ 124 (384)
.|.+ ++.|+ +.|||.|..-.+.+.+...--.+.++.+ +-|++++
T Consensus 39 ~gew-mi~~~-ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~np 84 (248)
T KOG0913|consen 39 TGEW-MIEFG-APWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNP 84 (248)
T ss_pred chHH-HHHhc-CCCCccccchHHHHhccCCccCCCceeEEEEEEEecc
Confidence 4555 56777 9999999999998887766555555543 3445554
No 470
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=27.50 E-value=2.5e+02 Score=26.92 Aligned_cols=51 Identities=18% Similarity=0.086 Sum_probs=23.7
Q ss_pred CCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCH-----HhHHHHhcC
Q psy17178 270 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSH-----FTHLAWVNT 324 (384)
Q Consensus 270 Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~-----~~~~~~~~~ 324 (384)
+|+.|+.|. +-....=.+ .+.++...|++.|..|+-..-|+- +.++.|.++
T Consensus 137 ~~p~Vil~v-GVNG~GKTT---TIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er 192 (340)
T COG0552 137 KKPFVILFV-GVNGVGKTT---TIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGER 192 (340)
T ss_pred CCcEEEEEE-ecCCCchHh---HHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHH
Confidence 345555554 443332222 234444444555566665555542 344455554
No 471
>PRK12359 flavodoxin FldB; Provisional
Probab=26.81 E-value=1.8e+02 Score=24.86 Aligned_cols=17 Identities=12% Similarity=0.112 Sum_probs=7.0
Q ss_pred HHHHhHHHHHhCCcEEE
Q psy17178 102 AFNDRLEEFHQINTEVV 118 (384)
Q Consensus 102 ~l~~~~~~~~~~~v~vi 118 (384)
.+..+++.+++.|.+++
T Consensus 100 a~~~l~~~l~~~Ga~iv 116 (172)
T PRK12359 100 ALGMLHDKLAPKGVKFV 116 (172)
T ss_pred HHHHHHHHHHhCCCeEE
Confidence 33344444444444443
No 472
>KOG2961|consensus
Probab=25.93 E-value=2e+02 Score=24.25 Aligned_cols=70 Identities=17% Similarity=0.191 Sum_probs=40.6
Q ss_pred eEEccccCC-CeEEEEEeeCCCC-------CCchHHHHHHHHhHHHHHhCCcEEEEEeC-----CCHHhHHhhccCcccc
Q psy17178 72 EIKLSDYYG-KYLVFFFYPLDFT-------FVCPTEILAFNDRLEEFHQINTEVVAASV-----DSHFTHLAWVNTPRKE 138 (384)
Q Consensus 72 ~~~l~~~~g-k~vvl~f~~~~~c-------p~C~~~~~~l~~~~~~~~~~~v~vi~Vs~-----d~~~~~~~~~~~~~~~ 138 (384)
+....+++| |.+|+. .+.| ..-+.++|.+.+....|.++++.++.=|. |...+..+-.+.
T Consensus 34 p~~I~~~~~ikavVlD---KDNcit~P~~~~Iwp~~l~~ie~~~~vygek~i~v~SNsaG~~~~D~d~s~Ak~le~---- 106 (190)
T KOG2961|consen 34 PWEILKRKGIKAVVLD---KDNCITAPYSLAIWPPLLPSIERCKAVYGEKDIAVFSNSAGLTEYDHDDSKAKALEA---- 106 (190)
T ss_pred CcchhhccCceEEEEc---CCCeeeCCcccccCchhHHHHHHHHHHhCcccEEEEecCcCccccCCchHHHHHHHH----
Confidence 455556666 555553 2222 23345778888888888888877776554 333333333332
Q ss_pred CCCCccceeEEeeC
Q psy17178 139 GGLGKLKIPLLSDL 152 (384)
Q Consensus 139 ~~~~~~~~p~l~D~ 152 (384)
.+..|++--.
T Consensus 107 ----k~gIpVlRHs 116 (190)
T KOG2961|consen 107 ----KIGIPVLRHS 116 (190)
T ss_pred ----hhCCceEeec
Confidence 6778888643
No 473
>KOG2116|consensus
Probab=25.75 E-value=1.8e+02 Score=30.43 Aligned_cols=54 Identities=6% Similarity=0.061 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhCCcEEEEEeC---CCHHhHHHHhcCccccCCCCCcceeEEecCchHH
Q psy17178 292 AFNDRLEEFHQINTEVVAASV---DSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI 346 (384)
Q Consensus 292 ~l~~l~~~~~~~~v~vv~Is~---d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 346 (384)
-+.+||.+.++.|.+++-.|. .-.+..+.|+..++..+.. -..=|++..+++.+
T Consensus 562 GVAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~yL~nv~QdG~~-LPdGPViLSPd~lf 618 (738)
T KOG2116|consen 562 GVAKLYTKIKENGYKILYLSARAIGQADSTRQYLKNVEQDGKK-LPDGPVILSPDSLF 618 (738)
T ss_pred hHHHHHHHHHhCCeeEEEEehhhhhhhHHHHHHHHHHhhcCcc-CCCCCEEeCCCcch
Confidence 367899999999999999985 4567788888888655322 56678888877543
No 474
>COG0694 Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones]
Probab=25.64 E-value=2.5e+02 Score=21.47 Aligned_cols=35 Identities=9% Similarity=0.124 Sum_probs=22.9
Q ss_pred ccceEEccccCC--CeEEEEEeeCCCCCCchHHHHHHHH
Q psy17178 69 QLKEIKLSDYYG--KYLVFFFYPLDFTFVCPTEILAFND 105 (384)
Q Consensus 69 ~g~~~~l~~~~g--k~vvl~f~~~~~cp~C~~~~~~l~~ 105 (384)
+|..+.+-++.. ..|.|.|- ++ |..|...--.|+.
T Consensus 29 dGGdve~~~i~~~~g~V~l~l~-Ga-C~gC~sS~~TLk~ 65 (93)
T COG0694 29 DGGDVELVGIDEEDGVVYLRLG-GA-CSGCPSSTVTLKN 65 (93)
T ss_pred cCCeEEEEEEecCCCeEEEEeC-Cc-CCCCcccHHHHHH
Confidence 788898888864 35666666 66 5557665444444
No 475
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=25.44 E-value=1.4e+02 Score=23.02 Aligned_cols=59 Identities=8% Similarity=-0.107 Sum_probs=36.0
Q ss_pred CCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEecCC
Q psy17178 303 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFERGN 381 (384)
Q Consensus 303 ~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~~ 381 (384)
.+..-+++.+++.+++.++.+++.+. +..+ . .+. ..+ .....|+.||+|..+..+...+
T Consensus 63 ~~~~hi~f~v~~~~~v~~~~~~l~~~----g~~~--~-~~~-----~~~--------~~~~~~~~DPdG~~iEi~~~~~ 121 (125)
T cd07255 63 TGLYHFAILLPSRADLAAALRRLIEL----GIPL--V-GAS-----DHL--------VSEALYLSDPEGNGIEIYADRP 121 (125)
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHc----CCce--e-ccc-----ccc--------ceeEEEEECCCCCEEEEEEecC
Confidence 35667788888877777777776544 3332 1 110 000 1134689999999998766544
No 476
>PRK06184 hypothetical protein; Provisional
Probab=25.39 E-value=2.9e+02 Score=27.87 Aligned_cols=92 Identities=12% Similarity=-0.035 Sum_probs=56.8
Q ss_pred CCCCCCCCceeeeEEcCcceeeecccc-C-CCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178 242 FVSKPAPFWQGTAVVDGQLKEIKLSDY-Y-GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL 319 (384)
Q Consensus 242 ~~g~~~P~f~l~~l~d~~g~~~~l~d~-~-Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~ 319 (384)
.+|..+|+..+. +.+|+++++.|+ . ++++||.|-...+ .. . ...++.++.|....
T Consensus 387 ~~G~r~p~~~~~---~~~~~~~~l~d~~~~~~~~ll~~~~~~~--~~------~-------~~~~~~~~~~~~~~----- 443 (502)
T PRK06184 387 RAGDRAPDAPLL---GAAGQPTRLFDLFRGPHWTLLAFGAGAA--AI------L-------ARRGLRIHRVGDAA----- 443 (502)
T ss_pred CCcCCCCCchhc---cCCCceeeHHHhhCCCcEEEEEecCCch--hh------h-------hhcCceEEEecccC-----
Confidence 368888888775 336777777775 3 4788887642221 00 0 12345555543221
Q ss_pred HHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178 320 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE 378 (384)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~ 378 (384)
. . ..+.|.++...+.|++ .....+||-|||-|.++..
T Consensus 444 ----~--------~---~~~~d~~g~~~~~~~~-------~~~~~~lvRPDg~v~~~~~ 480 (502)
T PRK06184 444 ----E--------G---GDLVDDAGHFRDAYGL-------TGGTLVLVRPDGYVGLIAA 480 (502)
T ss_pred ----C--------C---CceeCCCccHHHHhcC-------CCCcEEEECCCcceEEEec
Confidence 0 1 1357888899999987 2335799999999887643
No 477
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=25.30 E-value=80 Score=26.25 Aligned_cols=59 Identities=12% Similarity=0.145 Sum_probs=44.7
Q ss_pred EEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCc
Q psy17178 83 LVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLT 153 (384)
Q Consensus 83 vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~ 153 (384)
+||.+. +---|.+.-.....+++.+++..+. ++||..-+....+.|.+ .++|.++.|.+
T Consensus 83 ~vVlmG-GLAMP~~~v~~e~v~~li~ki~~~~--iiGiCFms~F~kagW~~---------~I~FD~iID~~ 141 (147)
T PF09897_consen 83 VVVLMG-GLAMPKSGVTPEDVNELIKKISPKK--IIGICFMSMFEKAGWDD---------KIDFDYIIDAD 141 (147)
T ss_dssp EEEEEG-GGGSTTTS--HHHHHHHHHHHEEEE--EEEEEETTHHHHTTHHH---------HS--SEEEEEE
T ss_pred EEEEEc-ccccCCCCCCHHHHHHHHHHhCcCC--EEEEehHHHHHHcCCcc---------ccCccEEEeee
Confidence 455555 7778888888889999999987654 89999999999999998 57888888754
No 478
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=25.01 E-value=2e+02 Score=29.17 Aligned_cols=42 Identities=14% Similarity=0.025 Sum_probs=28.6
Q ss_pred cccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEE
Q psy17178 266 SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAA 310 (384)
Q Consensus 266 ~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~I 310 (384)
..+.++.-+..|. +..||.|+.....++++.... .++..-.|
T Consensus 112 ~~~~~~~~i~~fv-~~~Cp~Cp~~v~~~~~~a~~~--~~i~~~~i 153 (517)
T PRK15317 112 KALDGDFHFETYV-SLSCHNCPDVVQALNLMAVLN--PNITHTMI 153 (517)
T ss_pred HhcCCCeEEEEEE-cCCCCCcHHHHHHHHHHHHhC--CCceEEEE
Confidence 3444455566666 999999999888888887643 35555455
No 479
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=24.88 E-value=5.6e+02 Score=23.76 Aligned_cols=89 Identities=15% Similarity=0.121 Sum_probs=52.9
Q ss_pred CCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHH-HHHH-HHhHHHHH--hCCcEEEEEeCCCHHhH
Q psy17178 53 LSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTE-ILAF-NDRLEEFH--QINTEVVAASVDSHFTH 128 (384)
Q Consensus 53 ~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~-~~~l-~~~~~~~~--~~~v~vi~Vs~d~~~~~ 128 (384)
.=+..|-|++. |.+|+++-.+.-.|+.+.-.|+ ++.+ ...+ +++.++-. ..++.|+.|+.+.....
T Consensus 78 kL~~VPVFtIt---n~~G~pvl~s~~~~~~~~gvf~-------s~qedA~afL~~lk~~~p~l~~~~kV~pvsL~~vYkl 147 (270)
T TIGR00995 78 ILAGTSVFTVS---NAQNEFVLASDNDGEKSIGLLC-------FRQEDAEAFLAQLRKRKPEVGSQAKVVPITLDQVYKL 147 (270)
T ss_pred HhcCCceEEEE---cCCCCeEEEECCCCCceEEEEE-------CCHHHHHHHHHHHHhhCccccCCceEEEEEHHHHHHH
Confidence 34567889984 5589988777665644443343 1333 3333 33322211 24689999999886544
Q ss_pred HhhccCccccCCCCccceeEEeeCcchhHHhhcCc
Q psy17178 129 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVY 163 (384)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~ 163 (384)
.+. ++.|.++.|+. ++..+.++.
T Consensus 148 ---~~e--------~l~F~fiP~~~-qV~~A~~ll 170 (270)
T TIGR00995 148 ---KVE--------GIGFRFLPDPA-QIKNALELP 170 (270)
T ss_pred ---hhc--------CccEEEeCCHH-HHHHHHHHH
Confidence 221 58899999864 455556654
No 480
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=24.56 E-value=1.6e+02 Score=19.42 Aligned_cols=54 Identities=17% Similarity=0.152 Sum_probs=27.9
Q ss_pred eeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCc
Q psy17178 88 YPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLT 153 (384)
Q Consensus 88 ~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~ 153 (384)
|...+||.|.+-...|... +..++++-++.+..... .+.+.. ..-..|++.+.+
T Consensus 4 y~~~~~~~~~~~~~~l~~~-----~i~~~~~~~~~~~~~~~-~~~~~~------~~~~~P~l~~~~ 57 (71)
T cd00570 4 YYFPGSPRSLRVRLALEEK-----GLPYELVPVDLGEGEQE-EFLALN------PLGKVPVLEDGG 57 (71)
T ss_pred EeCCCCccHHHHHHHHHHc-----CCCcEEEEeCCCCCCCH-HHHhcC------CCCCCCEEEECC
Confidence 3356799999766555543 23345555554432221 222211 123678887764
No 481
>KOG3414|consensus
Probab=23.83 E-value=2.6e+02 Score=22.72 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=29.1
Q ss_pred CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcE-EEEEeCC
Q psy17178 80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTE-VVAASVD 123 (384)
Q Consensus 80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~-vi~Vs~d 123 (384)
.|.+||-|. -.|-|.|...=..|.+..++.. ++. +.-|-.|
T Consensus 23 ~rlvViRFG-r~~Dp~C~~mD~~L~~i~~~vs--nfa~Iylvdid 64 (142)
T KOG3414|consen 23 ERLVVIRFG-RDWDPTCMKMDELLSSIAEDVS--NFAVIYLVDID 64 (142)
T ss_pred ceEEEEEec-CCCCchHhhHHHHHHHHHHHHh--hceEEEEEecc
Confidence 478888888 8899999987777777777764 343 3344444
No 482
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=23.65 E-value=1.8e+02 Score=27.08 Aligned_cols=92 Identities=17% Similarity=0.234 Sum_probs=45.3
Q ss_pred CCCCccEEEeeecCccceEEccccC--CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHH---hCCcEEEEEeCCCHHhHH
Q psy17178 55 KPAPFWQGTAVVDGQLKEIKLSDYY--GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH---QINTEVVAASVDSHFTHL 129 (384)
Q Consensus 55 ~~aP~f~l~~~~~~~g~~~~l~~~~--gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~---~~~v~vi~Vs~d~~~~~~ 129 (384)
+..|-|++. |.+|+++-.+.-. ++.+.++|+ |+.+...+-+..++-+ ..++.|..|+.+....+.
T Consensus 73 ~~VPVF~it---n~~G~p~l~~~~~~~~~~v~~~F~-------s~~dA~~~L~~lk~~~p~~~~~~kV~pvsL~~vY~l~ 142 (274)
T PF04278_consen 73 AGVPVFTIT---NSQGEPVLVSGPDQGGKSVGLFFF-------SQQDAEAFLAQLKKSNPELASGAKVVPVSLGKVYQLA 142 (274)
T ss_dssp TTSEEEEEE----TT--B-----TTS--SEEEEEES--------HHHHHHHHHHHHH-SSHHHTT-EEEEEEHHHHHHHH
T ss_pred cCceEEEEE---CCCCCEEEeccCCCCCceEEEEEe-------cHHHHHHHHHHHhhhCccccCceEEEEecHHHHHHHH
Confidence 467889874 5599988777665 566666666 5666554433333322 367999999998765442
Q ss_pred hhccCccccCCCCccceeEEeeCcchhHHhhcC
Q psy17178 130 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGV 162 (384)
Q Consensus 130 ~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv 162 (384)
.-.+. ..+++.|.++.|.. ++..+..+
T Consensus 143 ~~~~~-----k~~~~~F~~vP~~~-qV~~A~~l 169 (274)
T PF04278_consen 143 QENKK-----KPEGLQFRFVPDPK-QVEAALEL 169 (274)
T ss_dssp HHTTT------TT-EEEEEE--HH-HHHHHHHH
T ss_pred HHhhc-----CCcCceEEEcCCHH-HHHHHHHH
Confidence 21110 12378899999864 34444444
No 483
>PRK10026 arsenate reductase; Provisional
Probab=23.63 E-value=2.4e+02 Score=23.26 Aligned_cols=44 Identities=7% Similarity=-0.038 Sum_probs=26.8
Q ss_pred EEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEe--CC--CHHhHHHHhcCc
Q psy17178 275 FFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAAS--VD--SHFTHLAWVNTP 325 (384)
Q Consensus 275 l~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is--~d--~~~~~~~~~~~~ 325 (384)
+.+|.-..|..|+.....|++. |+.+-.+. .+ +.+.++.|++..
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~-------gi~~~~~d~~~~ppt~~eL~~~l~~~ 51 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS-------GTEPTIIHYLETPPTRDELVKLIADM 51 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-------CCCcEEEeeeCCCcCHHHHHHHHHhC
Confidence 3445467788888776655543 44444444 44 357788888865
No 484
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=23.38 E-value=3.5e+02 Score=21.21 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=24.1
Q ss_pred CchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEecCCCCC
Q psy17178 342 LTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFERGNCDW 384 (384)
Q Consensus 342 ~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~~~d~ 384 (384)
.+..+...||+ ...|+.++. ++|+.+..- .|=.||
T Consensus 70 ~e~~L~~r~gv------~~~PaLvf~-R~g~~lG~i-~gi~dW 104 (107)
T PF07449_consen 70 AERALAARFGV------RRWPALVFF-RDGRYLGAI-EGIRDW 104 (107)
T ss_dssp HHHHHHHHHT-------TSSSEEEEE-ETTEEEEEE-ESSSTH
T ss_pred hHHHHHHHhCC------ccCCeEEEE-ECCEEEEEe-cCeecc
Confidence 34788899999 678887777 488888743 355555
No 485
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=23.11 E-value=1.2e+02 Score=23.36 Aligned_cols=59 Identities=14% Similarity=-0.035 Sum_probs=34.6
Q ss_pred CcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178 304 NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE 378 (384)
Q Consensus 304 ~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~ 378 (384)
++..+++.+++.+++.++.+++.+. +.+ +...+... ..+ ......++.||+|..+..+.
T Consensus 58 ~~~h~~f~v~~~~dl~~~~~~l~~~----G~~--~~~~~~~~--~~~--------~~~~~~~~~DP~G~~ie~~~ 116 (120)
T cd07254 58 GLNHLGVQVDSAEEVAEAKARAEAA----GLP--TFKEEDTT--CCY--------AVQDKVWVTDPDGNAWEVFV 116 (120)
T ss_pred CeeEEEEEeCCHHHHHHHHHHHHHc----CCe--EEccCCcc--ccc--------CCcceEEEECCCCCEEEEEE
Confidence 4566788888877777777766543 333 33222211 001 11234689999999988664
No 486
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=22.98 E-value=3.7e+02 Score=21.00 Aligned_cols=54 Identities=9% Similarity=0.025 Sum_probs=30.5
Q ss_pred HHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHHhCc
Q psy17178 296 RLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGV 352 (384)
Q Consensus 296 l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 352 (384)
..+..+......|-|+.|.++..++-++..-+.. +.++-.+.....+++++-|.
T Consensus 33 vlkalk~gkaklViiA~D~~~~~kkki~~~~~~~---~Vpv~~~~~t~~eLG~A~Gk 86 (108)
T PTZ00106 33 TLKALRNGKAKLVIISNNCPPIRRSEIEYYAMLS---KTGVHHYAGNNNDLGTACGR 86 (108)
T ss_pred HHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHhhc---CCCEEEeCCCHHHHHHHhCC
Confidence 3444455567888888886654443332221111 34433334666888888886
No 487
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=22.92 E-value=2.2e+02 Score=21.90 Aligned_cols=57 Identities=12% Similarity=-0.021 Sum_probs=36.2
Q ss_pred CcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178 304 NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER 379 (384)
Q Consensus 304 ~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~ 379 (384)
++.-+++.+++.+++.++.+++++. +.++... +... .++ .+.++.||+|..+..+..
T Consensus 62 ~~~h~af~v~~~~~v~~~~~~l~~~----G~~~~~~-~~~~----~~~----------~~~~~~DPdG~~iEl~~~ 118 (121)
T cd09013 62 GLGHIAWRASSPEALERRVAALEAS----GLGIGWI-EGDP----GHG----------KAYRFRSPDGHPMELYWE 118 (121)
T ss_pred ceEEEEEEcCCHHHHHHHHHHHHHc----CCccccc-cCCC----CCc----------ceEEEECCCCCEEEEEEe
Confidence 5667888888888888888877655 4443211 1000 111 245899999999887653
No 488
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=22.88 E-value=1.2e+02 Score=20.87 Aligned_cols=18 Identities=6% Similarity=-0.009 Sum_probs=12.4
Q ss_pred eeCCCCCCchHHHHHHHH
Q psy17178 88 YPLDFTFVCPTEILAFND 105 (384)
Q Consensus 88 ~~~~~cp~C~~~~~~l~~ 105 (384)
|...+||.|.+..-.+.+
T Consensus 4 y~~~~~~~~~~v~~~l~~ 21 (73)
T cd03059 4 YSGPDDVYSHRVRIVLAE 21 (73)
T ss_pred EECCCChhHHHHHHHHHH
Confidence 446789999987665543
No 489
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=22.27 E-value=1.2e+02 Score=25.70 Aligned_cols=40 Identities=10% Similarity=0.022 Sum_probs=29.7
Q ss_pred EEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCH
Q psy17178 276 FFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSH 315 (384)
Q Consensus 276 ~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~ 315 (384)
.||+..-||.|-...+.|.++.+++.+-.+....++..+.
T Consensus 3 ~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~~ 42 (193)
T PF01323_consen 3 EFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRPD 42 (193)
T ss_dssp EEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSSTH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccccc
Confidence 4444888999999999999999998444455566665443
No 490
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.61 E-value=92 Score=33.81 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=26.0
Q ss_pred CcceeEEecCchHHHHHhCce---ecCC--------C--ceeeEEEEEeCCceEEE
Q psy17178 333 KLKIPLLSDLTHKISLDYGVY---LSDQ--------G--HTLDKYCLECYKMVIVY 375 (384)
Q Consensus 333 ~~~~~~~~D~~~~~~~~~gv~---~~~~--------~--~~~p~~~lId~~G~i~~ 375 (384)
+-..|++.|+.- -..||.. ..+. | ...|..-+||++|+|..
T Consensus 249 ~r~IpIiaD~~V--D~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~in~ 302 (877)
T COG0525 249 GREIPIIADEYV--DPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRINE 302 (877)
T ss_pred CCeeeeecCccc--CCcCCCceEEecCCCCchhhhhhhcCCCCceEEECCCCeecc
Confidence 345888888653 2445532 1211 1 45788889999999984
No 491
>KOG0913|consensus
Probab=21.41 E-value=22 Score=31.93 Aligned_cols=37 Identities=14% Similarity=0.189 Sum_probs=27.5
Q ss_pred CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEE
Q psy17178 269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEV 307 (384)
Q Consensus 269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~v 307 (384)
.|.+ ++.|+ +.|||.|..-.+.+.....--.+-++++
T Consensus 39 ~gew-mi~~~-ap~~psc~~~~~~~~~~a~~s~dL~v~v 75 (248)
T KOG0913|consen 39 TGEW-MIEFG-APWCPSCSDLIPHLENFATVSLDLGVKV 75 (248)
T ss_pred chHH-HHHhc-CCCCccccchHHHHhccCCccCCCceeE
Confidence 5666 45677 9999999999999888876555555443
No 492
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=21.29 E-value=1.5e+02 Score=30.21 Aligned_cols=37 Identities=14% Similarity=-0.055 Sum_probs=24.8
Q ss_pred CeE-EEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEE
Q psy17178 81 KYL-VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAA 120 (384)
Q Consensus 81 k~v-vl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~V 120 (384)
|++ +..|. ...||+|+.-...++++.... .++..-.|
T Consensus 116 ~~~~i~~fv-~~~Cp~Cp~~v~~~~~~a~~~--~~i~~~~i 153 (517)
T PRK15317 116 GDFHFETYV-SLSCHNCPDVVQALNLMAVLN--PNITHTMI 153 (517)
T ss_pred CCeEEEEEE-cCCCCCcHHHHHHHHHHHHhC--CCceEEEE
Confidence 555 55555 999999998888887766542 24554444
No 493
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=20.56 E-value=3.1e+02 Score=19.13 Aligned_cols=31 Identities=10% Similarity=0.070 Sum_probs=18.9
Q ss_pred EeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178 87 FYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124 (384)
Q Consensus 87 f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~ 124 (384)
+|....||.|++..-.|.+ +|+..-.+..|.
T Consensus 4 Ly~~~~~p~c~kv~~~L~~-------~gi~y~~~~~~~ 34 (77)
T cd03040 4 LYQYKTCPFCCKVRAFLDY-------HGIPYEVVEVNP 34 (77)
T ss_pred EEEcCCCHHHHHHHHHHHH-------CCCceEEEECCc
Confidence 3435679999987755544 455444455554
No 494
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=20.56 E-value=3.2e+02 Score=19.27 Aligned_cols=20 Identities=10% Similarity=0.172 Sum_probs=13.6
Q ss_pred EEeeCCCCCCchHHHHHHHH
Q psy17178 86 FFYPLDFTFVCPTEILAFND 105 (384)
Q Consensus 86 ~f~~~~~cp~C~~~~~~l~~ 105 (384)
..|...+||.|++..-.|.+
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~ 22 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTE 22 (77)
T ss_pred eEecCCCCchHHHHHHHHHH
Confidence 34546789999976655554
No 495
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=20.43 E-value=6.2e+02 Score=26.56 Aligned_cols=126 Identities=10% Similarity=-0.064 Sum_probs=66.6
Q ss_pred CCCCCCCCceeeeEEcCcceeeeccc-c--CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHH-----------hCC---
Q psy17178 242 FVSKPAPFWQGTAVVDGQLKEIKLSD-Y--YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH-----------QIN--- 304 (384)
Q Consensus 242 ~~g~~~P~f~l~~l~d~~g~~~~l~d-~--~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~-----------~~~--- 304 (384)
.+|..+|++..... .+++++.|.+ + .|++.|+.|- +..- .......|..+.+.+. ..+
T Consensus 464 ~~G~r~~~~~v~~~--~d~~~~~l~~~~~~~g~~~l~~f~-~~~~--~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 538 (634)
T PRK08294 464 PIGKRFHSAPVIRL--ADAKPVHLGHAATADGRWRIYAFA-DAAD--PAGPGSALDALCEFLAESPDSPLRRFTPSGADI 538 (634)
T ss_pred CCceeCCCCceeec--cCCCchhHhhhcccCCCEEEEEEc-CCCC--cchhHHHHHHHHHHHhhCccchHhhcCCCCCCC
Confidence 36788888887643 3666777665 3 5789888876 3221 2233444444444441 111
Q ss_pred ---cEEEEEeCCC-----HHhHHHHhcCccccCCCCCc-ce-eEEecC--chHHHHHhCceecCCCceeeEEEEEeCCce
Q psy17178 305 ---TEVVAASVDS-----HFTHLAWVNTPRKEGGLGKL-KI-PLLSDL--THKISLDYGVYLSDQGHTLDKYCLECYKMV 372 (384)
Q Consensus 305 ---v~vv~Is~d~-----~~~~~~~~~~~~~~~~~~~~-~~-~~~~D~--~~~~~~~~gv~~~~~~~~~p~~~lId~~G~ 372 (384)
+.++.|...+ -.++.+.....+... ++ .+ .++.|. .+...+.||+-. ..-..+|+-|||-
T Consensus 539 ~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~gi~~-----~~g~~vvvRPD~~ 610 (634)
T PRK08294 539 DAVIDVRAIFQQPHRELDLEDVPALLLPRKGRF---GLTDYEKVFCADLSGADIFDLRGIDR-----DRGAVVVVRPDQY 610 (634)
T ss_pred CcEEEEEEEecCCCCccchhhCcHhhCCccccc---CccchhheecCCCchhhHHHhhCCCC-----CceeEEEECCCCc
Confidence 5566665431 112223333222211 22 22 344443 246778899721 1236789999998
Q ss_pred EEEEEecC
Q psy17178 373 IVYWFERG 380 (384)
Q Consensus 373 i~~~~~~~ 380 (384)
|-++-.-+
T Consensus 611 v~~~~~l~ 618 (634)
T PRK08294 611 VANVLPLD 618 (634)
T ss_pred eEEEecCc
Confidence 87765443
No 496
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=20.37 E-value=3e+02 Score=18.87 Aligned_cols=16 Identities=6% Similarity=0.042 Sum_probs=11.0
Q ss_pred CCCCCCchHHHHHHHH
Q psy17178 90 LDFTFVCPTEILAFND 105 (384)
Q Consensus 90 ~~~cp~C~~~~~~l~~ 105 (384)
..+||.|.+-.-.|..
T Consensus 6 ~~~~p~~~rvr~~L~~ 21 (71)
T cd03037 6 YEHCPFCVKARMIAGL 21 (71)
T ss_pred cCCCcHhHHHHHHHHH
Confidence 5689999966554444
Done!